Citrus Sinensis ID: 018938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MICIADITPFHKTEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Secondary Structure (PSIPRED)
cEEEccccccccccHHHHHHcccccccccEEEEcccEEEccccccccccccccEEEcccEEEccccEEEEEccccccHHHHHHHHHccccccccEEEEcccccccccccccccccEEEcEEEEEcEEcccccccccccccHHHHHcccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccEEEEEEccEEEEcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccHHHHHHHHHHcccccccccccccHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEcEEEEEcccEEEEEEEEccccHHHHHHHHHccccccccEEEEcccccccccHHHHHHHHHHHcHEEEcccccccccEEcccccccHHHcccccHHHHHHHHHHHHHHcccHcccccHcccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHcHEEEEcccEEEEEccHHHHHcccccHHHHHHHHHccccccHHHHHHHHHccccccEEEEccccEEEcccHHHHHcEEcccccEcccEcccccccHEEEEccccEcc
Coil and Loop (DISEMBL)
miciaditpfhkteeEEERKMAVMENSKPTVEINAlkftypgidghpppgstplindftltlnagdrcllvgsngagkTTILKIIGGKHMVEPEMVKVLGRsafhdtaltssgdlsylggeWRREVAfagfevpiqmdvsAEKMIFGVAGIDPQRRAELIKVLDIdlswrmhkvsdgQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIfdglenwpsHIVYVAHGklqlampmdkVKEASKLSLMRTVESWLRKERDEERKRRRErkasglpefdkqihgsrvtgdpAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Flexible Loop (DISEMBL)
miciaditpfhkteeeeeRKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGvagidpqrRAELIKVldidlswrmhkvsdgqrrRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAsklslmrtveswlrkerdeerkrrrerkasglpefdkqihgsrvtGDPAQAAVRVMNNGWAAGRlhstvageenfvlstnrvlr
Low Complexity Region (SEG)
MICIADITPFHKTeeeeeRKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITvdldvlaradllrflrKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLrkerdeerkrrrerkASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Disordered region (IsUnstruct)
*******************************EINALKFTYPGIDG******TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM*********************************************************AVRVMNNGWAAGRLHSTVAGEENFVL*******
Disordered Region (DISOPRED)
*IC***************************VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRK********************DKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRV**
Disordered Region (DISEMBL)
MICIADITPFHKT***********ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWL******************LPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Disordered Region (DISPRO)
*************************NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MICIADITPFHKTEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q9LZ98	328	ABC transporter I family	yes	no	0.931	0.987	0.846	1e-153
Q9XF19	282	ABC transporter I family	no	no	0.689	0.851	0.601	1e-83
Q3EDJ0	290	ABC transporter I family	no	no	0.692	0.831	0.599	5e-82
Q7Z991	280	Uncharacterized ABC trans	yes	no	0.706	0.878	0.431	3e-50
P43569	289	CCR4-associated factor 16	yes	no	0.652	0.785	0.377	8e-42
Q88ZZ2	566	Putative ABC transporter	no	no	0.655	0.402	0.274	6e-14
D5AQY6	254	Nickel import ATP-binding	yes	no	0.614	0.842	0.288	6e-14
Q8DG84	284	Putative ABC transporter	yes	no	0.606	0.742	0.275	7e-14
Q97N51	279	Energy-coupling factor tr	yes	no	0.606	0.756	0.284	5e-13
Q8DMY0	279	Energy-coupling factor tr	yes	no	0.566	0.706	0.294	1e-12

>sp|Q9LZ98|AB20I_ARATH ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1

 Score =  542 bits (1397), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 281/332 (84%), Positives = 306/332 (92%), Gaps = 8/332 (2%)

Query: 21  MAVMENSK---PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAG 77
           MAV E  K    TVEI+ L+FTYPGIDGHPPPGS PLI DF++TLN+ DRCLLVGSNGAG
Sbjct: 1   MAVTEEEKKRNSTVEISGLRFTYPGIDGHPPPGSKPLIEDFSITLNSSDRCLLVGSNGAG 60

Query: 78  KTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM 137
           KTTILKI+GGKHMVEP MV+VLGRSAFHDT LTSSGDL YLGGEWRR+VAFAGFEVPIQM
Sbjct: 61  KTTILKILGGKHMVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQM 120

Query: 138 DVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLL 197
           D+SAEKMIFGVAGIDPQRR ELIKVLDID+SWR+HKVSDGQRRRVQICMGLLKPFKVLLL
Sbjct: 121 DISAEKMIFGVAGIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLL 180

Query: 198 DEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257
           DEITVDLDVLARADLL+FLRKECEERGATIIYATHIFDGLE+WP+HIVYVA+GKLQLA+P
Sbjct: 181 DEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTHIVYVANGKLQLALP 240

Query: 258 MDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAV 317
           M+KVKE SK SLMRTVESWLRKERDEERKRR+ERKA+GLPEF+ +   SRVTGDPA    
Sbjct: 241 MEKVKETSKKSLMRTVESWLRKERDEERKRRKERKANGLPEFETRTEESRVTGDPA---- 296

Query: 318 RVMNNGWAAGRLHSTVA-GEENFVLSTNRVLR 348
           R++NNGWAAGRLHSTVA GE+NFVLS+NRVLR
Sbjct: 297 RMLNNGWAAGRLHSTVAGGEDNFVLSSNRVLR 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XF19|AB21I_ARATH ABC transporter I family member 21 OS=Arabidopsis thaliana GN=ABCI21 PE=2 SV=1

 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 151/251 (60%), Positives = 190/251 (75%), Gaps = 11/251 (4%)

Query: 30  TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
            + ++ ++F+Y   D        P+  DF L L AG RCLLVG+NG+GKTT+LKI+ GKH
Sbjct: 12  AIRVSGMQFSYDVQD--------PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKH 63

Query: 90  MVE-PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV 148
           MV    +V+VL RSAFHDT L  SGDLSYLGG W +    AG ++P+Q D SAE MIFGV
Sbjct: 64  MVGGKNVVQVLDRSAFHDTELVCSGDLSYLGGSWSKTAGSAG-DIPLQGDFSAEHMIFGV 122

Query: 149 AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 208
            GIDP RR +LI +LDI+L WRMHKVSDGQRRRVQICMGLL PFKVLLLDE+TVDLDV+A
Sbjct: 123 EGIDPFRREKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVA 182

Query: 209 RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE-ASKL 267
           R DLL F ++ECE+RGATI+YATHIFDGLE W SH+ Y+  G+L+L+  +D++K+  +  
Sbjct: 183 RMDLLEFFKEECEQRGATIVYATHIFDGLETWASHLAYINGGELKLSAKLDEIKDLKTSP 242

Query: 268 SLMRTVESWLR 278
           +L+  VE+WLR
Sbjct: 243 NLLSVVEAWLR 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDJ0|AB19I_ARATH ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1

 Score =  305 bits (780), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 151/252 (59%), Positives = 185/252 (73%), Gaps = 11/252 (4%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           + ++ ++F Y   D        P+  DF L L AG RCLLVG+NG+GKTT+LKI+ GKHM
Sbjct: 14  IRVSGMQFAYEVED--------PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHM 65

Query: 91  VE-PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 149
           V    +V+VL RSAFHDT L  SGDLSYLGG W + V  AG EVP+Q D SAE MIFGV 
Sbjct: 66  VGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAG-EVPLQGDFSAEHMIFGVE 124

Query: 150 GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 209
           G DP RR +LI +LDI+L WRMHKVSDGQ+RRVQICMGLL PFKVLLLDE+TVDLDV+AR
Sbjct: 125 GTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVAR 184

Query: 210 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE-ASKLS 268
            DLL F ++EC++RGATI+YATHIFDGLE W +H+ Y+  G+L     M  ++E  +  +
Sbjct: 185 MDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPN 244

Query: 269 LMRTVESWLRKE 280
           L+  VESWLR E
Sbjct: 245 LLSVVESWLRSE 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Z991|YE31_SCHPO Uncharacterized ABC transporter ATP-binding protein C20G4.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20G4.01 PE=4 SV=2

 Score =  199 bits (505), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 117/271 (43%), Positives = 164/271 (60%), Gaps = 25/271 (9%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           V ++ L +T+        P     ++  TL L  G R LLVG+NGAGK+T+LK++ GK +
Sbjct: 3   VTVSNLSYTFS-------PKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSL 55

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG 150
            +   + V G+  F +    SS    YLG EW            I  D+S  ++I  V G
Sbjct: 56  AKAGHISVGGKDPFRE----SSSAFVYLGTEWVNNPV-------IHRDMSVARLIASVGG 104

Query: 151 ID-PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 209
               +RR  LI +LDIDL WRMH VSDG+RRRVQ+CMGLL+PF+VLLLDE+TVDLDVLAR
Sbjct: 105 DKFAERRDFLISILDIDLRWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLAR 164

Query: 210 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV------KE 263
           ADLL FL++E E R ATI+YATHIFDGL  WP+H+V+++ G++    P+ K         
Sbjct: 165 ADLLNFLQEETEVRNATIVYATHIFDGLAEWPTHLVHLSLGRIVDYGPISKFGALMTRSS 224

Query: 264 ASKLSLMRTVESWLRKERDEERKRRRERKAS 294
               +L+ T   WL++++     R  E++++
Sbjct: 225 TGNSALLETCLEWLKEDKKNRGTREEEKRST 255

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P43569|CAF16_YEAST CCR4-associated factor 16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAF16 PE=1 SV=1

 Score =  171 bits (433), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 96/254 (37%), Positives = 144/254 (56%), Gaps = 27/254 (10%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
           S+  +E+  L + +          S P + D  L +    R L+VG+NGAGK+T+LK++ 
Sbjct: 3   SQFAIEVRNLTYKFK-------ESSDPSVVDINLQIPWNTRSLVVGANGAGKSTLLKLLS 55

Query: 87  GKHMVEPEMVKVLGRSAFHDTALTSSGD------------LSYLGGEWRREVAFAGFEVP 134
           GKH+     + V G   F   ++    D             +YLG EW            
Sbjct: 56  GKHLCLDGKILVNGLDPFSPLSMNQVDDDESVEDSTNYQTTTYLGTEWCHMSI------- 108

Query: 135 IQMDVSAEKMIFGVAGIDPQRRAE-LIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFK 193
           I  D+   +++  +     + R E L+++LDID+ WRMH++SDGQ+RRVQ+ MGLLKP++
Sbjct: 109 INRDIGVLELLKSIGFDHFRERGERLVRILDIDVRWRMHRLSDGQKRRVQLAMGLLKPWR 168

Query: 194 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
           VLLLDE+TVDLDV+ARA LL FL+ E E R  +++YATHIFDGL  WP+ + ++  GK+ 
Sbjct: 169 VLLLDEVTVDLDVIARARLLEFLKWETETRRCSVVYATHIFDGLAKWPNQVYHMKSGKIV 228

Query: 254 LAMPMDKVKEASKL 267
             +   K  E S++
Sbjct: 229 DNLDYQKDVEFSEV 242

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q88ZZ2|Y149_LACPL Putative ABC transporter ATP-binding protein lp_0149 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=lp_0149 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 16/244 (6%)

Query: 26  NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
           + +P + I  L F      G+ P  + P+IND T+TL+ G+   LVG NG GK+T+  +I
Sbjct: 297 HDQPLLAIEHLTF------GYDP--AKPIINDITVTLHQGEMISLVGQNGTGKSTLSNLI 348

Query: 86  GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI 145
            G  M +   ++  G S    +    +  + Y+  +  + ++       I  +V+A  ++
Sbjct: 349 TGFLMPQSGKMRFNGHSLADQSVKERADQIGYILQDPNQMIS----TTMIFDEVAAGLVL 404

Query: 146 FGVAGIDPQRRAE-LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV 202
            GVA  + +RR + ++KV  +     W +  +S GQ++RV I   L+    +L+LDE T 
Sbjct: 405 RGVADDEVKRRVQAVLKVCGLYEFRHWPISALSFGQKKRVTIAAILVLEPAMLILDEPTA 464

Query: 203 DLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL-AMPMDKV 261
             D+    +++ FL K  +E+  TI+  TH    +  +    + + HG + + A P D +
Sbjct: 465 GQDLQHYTEMMTFLTKINQEQHMTIMLITHDMHLMLEYTDRTIVLGHGNILMDARPADVL 524

Query: 262 KEAS 265
             AS
Sbjct: 525 TNAS 528

Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system.

Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) (taxid: 220668)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|D5AQY6|NIKO_RHOCB Nickel import ATP-binding protein NikO OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=nikO PE=1 SV=1

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 36/250 (14%)

Query: 29  PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
           P  E+  ++F Y G+         P +N   LTL  G R  L+G+NG+GK+T+L+++ G 
Sbjct: 3   PAFELQGVQFAYKGV---------PALNGLDLTLPLGRRTALLGANGSGKSTLLRLLDGL 53

Query: 89  HMVEPEMVKVLG----RSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSA-- 141
                  +   G     + F D A   +         +RR V F  F+ P +Q+   +  
Sbjct: 54  QFPAAGRISAFGTPLTEAMFTDEAAAIA---------FRRRVGFV-FQNPEVQLFCPSVF 103

Query: 142 EKMIFGVAGID-PQRR-----AELIKVLDI-DLSWR-MHKVSDGQRRRVQICMGLLKPFK 193
           +++ FG   +  P+ R     A  I    +  L+ R  H++S G+++RV +   L+   +
Sbjct: 104 DELAFGPLQLHWPKERIRARVARAIAQFGLGPLAGRPPHRLSGGEKKRVALASVLILDPE 163

Query: 194 VLLLDEITVDLDVLARADLLRFLRKECEER--GATIIYATHIFDGLENWPSHIVYVAHGK 251
           VLLLDE T  LD  A  D+   L  E   R  G T+I+++H  D +     H+V +  GK
Sbjct: 164 VLLLDEPTAALDPQATDDIAALLETEFGARNPGRTLIFSSHDLDLVARIADHVVVLEAGK 223

Query: 252 LQLAMPMDKV 261
           +  A P  +V
Sbjct: 224 VAAAGPAAEV 233

Part of the energy-coupling factor (ECF) transporter complex NikMNQO involved in nickel import. The complex confers nickel uptake upon expression in E.coli; can also transport cobalt with a very low affinity. Presumably responsible for energy coupling to the transport system.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q8DG84|Y2439_THEEB Putative ABC transporter ATP-binding protein tll2439 OS=Thermosynechococcus elongatus (strain BP-1) GN=tll2439 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 29/240 (12%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
           S P +E + + F YP           P++ D + TL AG +  L+G NG+GK+T+  +  
Sbjct: 2   SVPLLEFHQVGFRYPNT-------PEPVLRDCSFTLEAGRKVALLGLNGSGKSTLFYLAA 54

Query: 87  GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS---AEK 143
             +  +   +   G+   H               +WR+ +  A F+ P Q  V+   AE 
Sbjct: 55  ALYRRDRGEIYCQGQRLVHQPQRLR---------QWRQRIGLA-FQDPEQQLVAATVAED 104

Query: 144 MIFGVAGI---DPQRRAELIKVLD----IDLSWR-MHKVSDGQRRRVQICMGLLKPFKVL 195
           + +G+  +    P+  A L + L     + L+ R +H +S GQ+RRV +   +     +L
Sbjct: 105 ISYGLCNLGLSPPEVAARLHQTLQEFDLVALADRPLHHLSLGQKRRVALAGVMALAPTLL 164

Query: 196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255
           LLDE T  LD   R  L   L K   ++G TI+ ATH  D    W   I+ + +G++ ++
Sbjct: 165 LLDEPTTYLDYQQRQQLRELLEK-IHQQGTTIVIATHDLDFAYGWADWIMILVNGQVSVS 223

Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q97N51|ECFA1_STRPN Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=ecfA1 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 21/232 (9%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           + +  + FTY        P ++  ++D +LT+  G    L+G  G+GK+TIL+++ G   
Sbjct: 3   IALENVNFTYQ----EGTPLASAALSDVSLTIEDGSYTALIGHTGSGKSTILQLLNGL-- 56

Query: 91  VEPEMVKVLGRSAFHDTALTSSG---DLSYLGGEWRREVAFAG---FEVPIQMDVSAEKM 144
               +V   G     DT +TS+    D+  +  +      FA    FE  +  DV+    
Sbjct: 57  ----LVPSQGSVRVFDTLITSTSKNKDIRQIRKQVGLVFQFAENQIFEETVLKDVAFGPQ 112

Query: 145 IFGVAGIDPQRRA-ELIKVLDIDLSW---RMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 200
            FGV+  D  + A E + ++ ID S       ++S GQ RRV I   L     +L+LDE 
Sbjct: 113 NFGVSEEDAVKTAREKLALVGIDESLFDRSPFELSGGQMRRVAIAGILAMEPAILVLDEP 172

Query: 201 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           T  LD L R +L+   +K   + G TI+  TH+ D +  + + +  +  G+L
Sbjct: 173 TAGLDPLGRKELMTLFKK-LHQSGMTIVLVTHLMDDVAEYANQVYVMEKGRL 223

Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Streptococcus pneumoniae (taxid: 1313)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q8DMY0|ECFA1_STRR6 Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ecfA1 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 17/214 (7%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
           P ++  ++D +LT+  G    L+G  G+GK+TIL+++ G       +V   G     DT 
Sbjct: 17  PLASAALSDVSLTIEDGSYTALIGHTGSGKSTILQLLNGL------LVPSQGSVRVFDTL 70

Query: 109 LTSSG---DLSYLGGEWRREVAFAG---FEVPIQMDVSAEKMIFGVAGIDPQRRA-ELIK 161
           +TS+    D+  +  +      FA    FE  +  DV+     FGV+  D  + A E + 
Sbjct: 71  ITSTSKNKDIRQIRKQVGLVFQFAENQIFEETVLKDVAFGPQNFGVSEEDAVKTAREKLA 130

Query: 162 VLDIDLSW---RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 218
           ++ ID S       ++S GQ RRV I   L     +L+LDE T  LD L R +L+   +K
Sbjct: 131 LVGIDESLFDRSPFELSGGQMRRVAIAGILAMEPSILVLDEPTAGLDPLGRKELMTLFKK 190

Query: 219 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
              + G TI+  TH+ D +  + + +  +  G+L
Sbjct: 191 -LHQSGMTIVLVTHLMDDVAEYANQVYVMEKGRL 223

Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
147807582	329	hypothetical protein VITISV_040623 [Viti	0.942	0.996	0.884	1e-171
225450516	329	PREDICTED: ABC transporter I family memb	0.942	0.996	0.881	1e-170
224087421	325	ABC transporter family protein [Populus	0.933	1.0	0.870	1e-170
224072397	326	ABC transporter family protein [Populus	0.933	0.996	0.868	1e-168
359487564	343	PREDICTED: ABC transporter I family memb	0.942	0.956	0.845	1e-168
356535000	333	PREDICTED: ABC transporter I family memb	0.931	0.972	0.854	1e-164
255638644	333	unknown [Glycine max]	0.931	0.972	0.851	1e-164
357441913	333	ABC transporter family protein [Medicago	0.928	0.969	0.855	1e-162
297810323	328	non-intrinsic abc protein 9 [Arabidopsis	0.931	0.987	0.846	1e-161
255587548	324	Cobalt import ATP-binding protein cbiO,	0.928	0.996	0.826	1e-155

>gi|147807582|emb|CAN66319.1| hypothetical protein VITISV_040623 [Vitis vinifera]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 290/328 (88%), Positives = 311/328 (94%)

Query: 21  MAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTT 80
           MAV + SKPTVEIN L+FTYPGIDG PPPGSTPLI+ F+LTLN+GDRCLLVGSNGAGKTT
Sbjct: 1   MAVKDISKPTVEINNLRFTYPGIDGQPPPGSTPLIDHFSLTLNSGDRCLLVGSNGAGKTT 60

Query: 81  ILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS 140
           ILKI+GGKHMVEP MV+VLGRSAFHDTALTSSGDL YLGGEWRR+VAFAGFEVPIQMDVS
Sbjct: 61  ILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVPIQMDVS 120

Query: 141 AEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 200
           AEKMIFGV+GIDPQRRAELIKVLDIDLSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEI
Sbjct: 121 AEKMIFGVSGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEI 180

Query: 201 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260
           TVDLDVLARADLL+FLRKECEERGATIIYATHIFDGLENWPSH+VYVAHGKLQLAMPM+K
Sbjct: 181 TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLENWPSHLVYVAHGKLQLAMPMEK 240

Query: 261 VKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVM 320
           V+E S LSLMRTVESWLRKERDE RKRR+ERKA GLPEF+ Q+ GSRV GDPA+AAVR +
Sbjct: 241 VREMSNLSLMRTVESWLRKERDEGRKRRKERKAVGLPEFESQVEGSRVAGDPARAAVRAL 300

Query: 321 NNGWAAGRLHSTVAGEENFVLSTNRVLR 348
           NNGWAAGRLHST+AGEENF LS+N VLR
Sbjct: 301 NNGWAAGRLHSTIAGEENFFLSSNSVLR 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450516|ref|XP_002281168.1| PREDICTED: ABC transporter I family member 20 isoform 1 [Vitis vinifera] gi|296089817|emb|CBI39636.3| unnamed protein product [Vitis vinifera]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 289/328 (88%), Positives = 310/328 (94%)

Query: 21  MAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTT 80
           MAV + SK TVEIN L+FTYPGIDG PPPGSTPLI+ F+LTLN+GDRCLLVGSNGAGKTT
Sbjct: 1   MAVKDISKQTVEINNLRFTYPGIDGQPPPGSTPLIDHFSLTLNSGDRCLLVGSNGAGKTT 60

Query: 81  ILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS 140
           ILKI+GGKHMVEP MV+VLGRSAFHDTALTSSGDL YLGGEWRR+VAFAGFEVPIQMDVS
Sbjct: 61  ILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVPIQMDVS 120

Query: 141 AEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 200
           AEKMIFGV+GIDPQRRAELIKVLDIDLSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEI
Sbjct: 121 AEKMIFGVSGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEI 180

Query: 201 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260
           TVDLDVLARADLL+FLRKECEERGATIIYATHIFDGLENWPSH+VYVAHGKLQLAMPM+K
Sbjct: 181 TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLENWPSHLVYVAHGKLQLAMPMEK 240

Query: 261 VKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVM 320
           V+E S LSLMRTVESWLRKERDE RKRR+ERKA GLPEF+ Q+ GSRV GDPA+AAVR +
Sbjct: 241 VREMSNLSLMRTVESWLRKERDEGRKRRKERKAVGLPEFESQVEGSRVAGDPARAAVRAL 300

Query: 321 NNGWAAGRLHSTVAGEENFVLSTNRVLR 348
           NNGWAAGRLHST+AGEENF LS+N VLR
Sbjct: 301 NNGWAAGRLHSTIAGEENFFLSSNSVLR 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087421|ref|XP_002308160.1| ABC transporter family protein [Populus trichocarpa] gi|222854136|gb|EEE91683.1| ABC transporter family protein [Populus trichocarpa]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/325 (87%), Positives = 308/325 (94%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           ME+ +PT+ IN L+FTYPGIDGHPPPGS PLI++F+L LN+GDRCLLVGSNGAGKTTILK
Sbjct: 1   MEHQEPTIVINGLRFTYPGIDGHPPPGSKPLIDEFSLNLNSGDRCLLVGSNGAGKTTILK 60

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK 143
           I+GGKHMVEP+MV+VLGRSAFHDTALTSSG LSYLGGEWRREVAFAGFEVPIQMD+SAEK
Sbjct: 61  ILGGKHMVEPQMVRVLGRSAFHDTALTSSGHLSYLGGEWRREVAFAGFEVPIQMDISAEK 120

Query: 144 MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 203
           MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL+PFKVLLLDEITVD
Sbjct: 121 MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEITVD 180

Query: 204 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263
           LDVLARADLL+FLRKECEERGATIIYATHIFDGLE WP+HI+YVAHGKLQ A+PM K+KE
Sbjct: 181 LDVLARADLLKFLRKECEERGATIIYATHIFDGLEEWPTHILYVAHGKLQFALPMAKIKE 240

Query: 264 ASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNG 323
            S LSLMRTVESWLRKERDEERKRR+ERKA GLPE++KQ+ GSRVTGDPA+   RVMNNG
Sbjct: 241 TSNLSLMRTVESWLRKERDEERKRRQERKAGGLPEYEKQVEGSRVTGDPARVGARVMNNG 300

Query: 324 WAAGRLHSTVAGEENFVLSTNRVLR 348
           WAAGRLHST+AGEENF LS+NRVLR
Sbjct: 301 WAAGRLHSTIAGEENFFLSSNRVLR 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072397|ref|XP_002303716.1| ABC transporter family protein [Populus trichocarpa] gi|222841148|gb|EEE78695.1| ABC transporter family protein [Populus trichocarpa]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 283/326 (86%), Positives = 307/326 (94%), Gaps = 1/326 (0%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           ME+ +PT++IN L+FTYPGIDGHPPPGS PLI++F LTLN+GDRCLLVGSNGAGKTTILK
Sbjct: 1   MEHQEPTIDINGLRFTYPGIDGHPPPGSKPLIDEFFLTLNSGDRCLLVGSNGAGKTTILK 60

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTA-LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE 142
           I+GGKHMVEP+MV+VLGRSAFHDTA LTSSG LSYLGGEWRREVAFAGFEVPIQMD+SAE
Sbjct: 61  ILGGKHMVEPQMVRVLGRSAFHDTAALTSSGHLSYLGGEWRREVAFAGFEVPIQMDISAE 120

Query: 143 KMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV 202
           KMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL+PFKVLLLDEI V
Sbjct: 121 KMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLRPFKVLLLDEIMV 180

Query: 203 DLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 262
           DLDVLARADLL+FLRKECEER ATIIYATHIFDGLE WP+HI+YVAHGKLQ AMPM K+K
Sbjct: 181 DLDVLARADLLKFLRKECEERSATIIYATHIFDGLEEWPTHILYVAHGKLQFAMPMAKIK 240

Query: 263 EASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNN 322
           E S LSLMRTVESWLRKERDEERKRR+ERKA GLPE++KQ+ GSRVTGDPA+   RVMNN
Sbjct: 241 ETSNLSLMRTVESWLRKERDEERKRRQERKAGGLPEYEKQVEGSRVTGDPARVGARVMNN 300

Query: 323 GWAAGRLHSTVAGEENFVLSTNRVLR 348
           GWAAGRLHST+AGEENF LS+NRVLR
Sbjct: 301 GWAAGRLHSTIAGEENFFLSSNRVLR 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487564|ref|XP_003633613.1| PREDICTED: ABC transporter I family member 20 isoform 2 [Vitis vinifera]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/342 (84%), Positives = 310/342 (90%), Gaps = 14/342 (4%)

Query: 21  MAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTT 80
           MAV + SK TVEIN L+FTYPGIDG PPPGSTPLI+ F+LTLN+GDRCLLVGSNGAGKTT
Sbjct: 1   MAVKDISKQTVEINNLRFTYPGIDGQPPPGSTPLIDHFSLTLNSGDRCLLVGSNGAGKTT 60

Query: 81  ILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS 140
           ILKI+GGKHMVEP MV+VLGRSAFHDTALTSSGDL YLGGEWRR+VAFAGFEVPIQMDVS
Sbjct: 61  ILKILGGKHMVEPHMVRVLGRSAFHDTALTSSGDLCYLGGEWRRDVAFAGFEVPIQMDVS 120

Query: 141 AEKMIFGVAGIDPQRRAELIKV--------------LDIDLSWRMHKVSDGQRRRVQICM 186
           AEKMIFGV+GIDPQRRAELIKV              LDIDLSWR+HKVSDGQRRRVQICM
Sbjct: 121 AEKMIFGVSGIDPQRRAELIKVRCESETPKLQSCNVLDIDLSWRLHKVSDGQRRRVQICM 180

Query: 187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 246
           GLLKPFKVLLLDEITVDLDVLARADLL+FLRKECEERGATIIYATHIFDGLENWPSH+VY
Sbjct: 181 GLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLENWPSHLVY 240

Query: 247 VAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGS 306
           VAHGKLQLAMPM+KV+E S LSLMRTVESWLRKERDE RKRR+ERKA GLPEF+ Q+ GS
Sbjct: 241 VAHGKLQLAMPMEKVREMSNLSLMRTVESWLRKERDEGRKRRKERKAVGLPEFESQVEGS 300

Query: 307 RVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENFVLSTNRVLR 348
           RV GDPA+AAVR +NNGWAAGRLHST+AGEENF LS+N VLR
Sbjct: 301 RVAGDPARAAVRALNNGWAAGRLHSTIAGEENFFLSSNSVLR 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535000|ref|XP_003536037.1| PREDICTED: ABC transporter I family member 20-like [Glycine max]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 277/324 (85%), Positives = 306/324 (94%)

Query: 25  ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
           ++   T+ I  L+FTYPGIDGHPPPGSTPLI DF LTL++G RCLLVGSNGAGKTT+LKI
Sbjct: 9   DSKAATIVIKDLRFTYPGIDGHPPPGSTPLIQDFNLTLSSGHRCLLVGSNGAGKTTLLKI 68

Query: 85  IGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM 144
           +GGKH+VEP+MV+VLGRSAFHDT L SSGDL YLGGEWRR+VAFAGFEVPIQMD+SA+KM
Sbjct: 69  LGGKHLVEPDMVRVLGRSAFHDTTLISSGDLCYLGGEWRRDVAFAGFEVPIQMDISAQKM 128

Query: 145 IFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL 204
           IFGV GIDPQRRAELIKVLDIDLSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL
Sbjct: 129 IFGVPGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL 188

Query: 205 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 264
           DVLARADLLRFLRKEC+ERGATIIYATHIFDGLE+WP++IVYVAHGKLQLAMPMDKVKE 
Sbjct: 189 DVLARADLLRFLRKECDERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAMPMDKVKEI 248

Query: 265 SKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGW 324
           SKLSLMRTVESWLRKERDE+RK+R+ERKA+GLPEF K++  SRVTGDPA+AAVRV+NNGW
Sbjct: 249 SKLSLMRTVESWLRKERDEDRKKRKERKAAGLPEFGKRVEESRVTGDPARAAVRVINNGW 308

Query: 325 AAGRLHSTVAGEENFVLSTNRVLR 348
           AAGRL STVAGEENF+LS+NRVLR
Sbjct: 309 AAGRLTSTVAGEENFLLSSNRVLR 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638644|gb|ACU19627.1| unknown [Glycine max]

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/324 (85%), Positives = 306/324 (94%)

Query: 25  ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
           ++   T+ I  L+FTYPGIDGHPPPGSTPLI DF LTL++G RCLLVGSNGAGKTT+LKI
Sbjct: 9   DSKAATIVIKDLRFTYPGIDGHPPPGSTPLIQDFNLTLSSGHRCLLVGSNGAGKTTLLKI 68

Query: 85  IGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM 144
           +GG+H+VEP+MV+VLGRSAFHDT L SSGDL YLGGEWRR+VAFAGFEVPIQMD+SA+KM
Sbjct: 69  LGGEHLVEPDMVRVLGRSAFHDTTLISSGDLCYLGGEWRRDVAFAGFEVPIQMDISAQKM 128

Query: 145 IFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL 204
           IFGV GIDPQRRAELIKVLDIDLSWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL
Sbjct: 129 IFGVPGIDPQRRAELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL 188

Query: 205 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 264
           DVLARADLLRFLRKEC+ERGATIIYATHIFDGLE+WP++IVYVAHGKLQLAMPMDKVKE 
Sbjct: 189 DVLARADLLRFLRKECDERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAMPMDKVKEI 248

Query: 265 SKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGW 324
           SKLSLMRTVESWLRKERDE+RK+R+ERKA+GLPEF K++  SRVTGDPA+AAVRV+NNGW
Sbjct: 249 SKLSLMRTVESWLRKERDEDRKKRKERKAAGLPEFGKRVEESRVTGDPARAAVRVINNGW 308

Query: 325 AAGRLHSTVAGEENFVLSTNRVLR 348
           AAGRL STVAGEENF+LS+NRVLR
Sbjct: 309 AAGRLTSTVAGEENFLLSSNRVLR 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441913|ref|XP_003591234.1| ABC transporter family protein [Medicago truncatula] gi|355480282|gb|AES61485.1| ABC transporter family protein [Medicago truncatula]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/325 (85%), Positives = 307/325 (94%), Gaps = 2/325 (0%)

Query: 26  NSKP-TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
           +SKP TVEI  LKFTYPGIDGHPPPGS PLI  F+L L +GDRCLLVGSNGAGKTTILKI
Sbjct: 8   DSKPITVEIKELKFTYPGIDGHPPPGSKPLIEHFSLNLFSGDRCLLVGSNGAGKTTILKI 67

Query: 85  IGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM 144
           +GGKHMVEPEMV+VLGRSAFHDT LTSSGDL YLGGEWRR+VAFAGFEVPIQMD+SAEKM
Sbjct: 68  LGGKHMVEPEMVRVLGRSAFHDTTLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISAEKM 127

Query: 145 IFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL 204
           IFGVAGIDP RRAELIKVLDI+LSWR+HKVSDGQRRRVQICMGLLKPF+VLLLDEITVDL
Sbjct: 128 IFGVAGIDPARRAELIKVLDINLSWRLHKVSDGQRRRVQICMGLLKPFQVLLLDEITVDL 187

Query: 205 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 264
           DVLARADLL+FLRKEC+ERGATIIYATHIFDGLE+WP++IVYVAHG+L+LAMP++KVKE 
Sbjct: 188 DVLARADLLKFLRKECDERGATIIYATHIFDGLEDWPTNIVYVAHGRLELAMPIEKVKET 247

Query: 265 SKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVT-GDPAQAAVRVMNNG 323
           SKLSLMRTVE WLRKERDE+R++R+ERKA+GLPEFDKQ+ GSRV  GDPA+A VRV NNG
Sbjct: 248 SKLSLMRTVEVWLRKERDEDRRQRKERKAAGLPEFDKQVDGSRVVGGDPARAPVRVTNNG 307

Query: 324 WAAGRLHSTVAGEENFVLSTNRVLR 348
           WAAGRLHST+AGEENF+LS+NRVLR
Sbjct: 308 WAAGRLHSTIAGEENFLLSSNRVLR 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810323|ref|XP_002873045.1| non-intrinsic abc protein 9 [Arabidopsis lyrata subsp. lyrata] gi|297318882|gb|EFH49304.1| non-intrinsic abc protein 9 [Arabidopsis lyrata subsp. lyrata]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/332 (84%), Positives = 305/332 (91%), Gaps = 8/332 (2%)

Query: 21  MAVMENSK---PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAG 77
           MAV E  K    TVEI+ L+FTYPGIDGHPPPGS PLI DF++TLN+ DRCLLVGSNGAG
Sbjct: 1   MAVTEEEKKRNSTVEISGLRFTYPGIDGHPPPGSKPLIEDFSITLNSSDRCLLVGSNGAG 60

Query: 78  KTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM 137
           KTTILKI+GGKHMVEP MV+VLGRSAFHDT LTSSGDL YLGGEWRR+VAFAGFEVPIQM
Sbjct: 61  KTTILKILGGKHMVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQM 120

Query: 138 DVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLL 197
           D+SAEKMIFGVAGIDPQRR ELIKVLDID+SWR+HKVSDGQRRRVQICMGLLKPFKVLLL
Sbjct: 121 DISAEKMIFGVAGIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLL 180

Query: 198 DEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257
           DEITVDLDVLARADLL+FLRKECEERGATIIYATHIFDGLE+WP++IVYVAHGKLQLA+P
Sbjct: 181 DEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLALP 240

Query: 258 MDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAV 317
           M+KVKE SK SLMRTVESWLRKERDEERKRR ERKA+GLPEF+ +   SRVTGDPA    
Sbjct: 241 MEKVKETSKKSLMRTVESWLRKERDEERKRRTERKANGLPEFETRTEESRVTGDPA---- 296

Query: 318 RVMNNGWAAGRLHSTVA-GEENFVLSTNRVLR 348
           R++NNGWAAGRLHSTVA GE+NFVLS+NRVLR
Sbjct: 297 RMLNNGWAAGRLHSTVAGGEDNFVLSSNRVLR 328

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587548|ref|XP_002534308.1| Cobalt import ATP-binding protein cbiO, putative [Ricinus communis] gi|223525527|gb|EEF28076.1| Cobalt import ATP-binding protein cbiO, putative [Ricinus communis]

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/329 (82%), Positives = 291/329 (88%), Gaps = 6/329 (1%)

Query: 21  MAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTT 80
           MAV+E  + T+E   LKFTYPGIDGHPPPGS PLI+DF LTLN+GDRCLLVGSNGAGKTT
Sbjct: 1   MAVVECKQATIETKGLKFTYPGIDGHPPPGSKPLIDDFNLTLNSGDRCLLVGSNGAGKTT 60

Query: 81  ILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS 140
           ILKI+GGKHMVEP MV+VL RSAFHDT LTSSGDL YLGGEWRREVAFAGFEVPIQMDVS
Sbjct: 61  ILKILGGKHMVEPHMVRVLERSAFHDTVLTSSGDLCYLGGEWRREVAFAGFEVPIQMDVS 120

Query: 141 AEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 200
           AEKMIFGVAG+DPQRR ELIKVLD+DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI
Sbjct: 121 AEKMIFGVAGVDPQRRDELIKVLDVDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 180

Query: 201 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260
           TVDLDVLARADLL+FLRKECEERGATIIYATHIFDGLE WPSHIVYVAHGKLQLAMPM +
Sbjct: 181 TVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEEWPSHIVYVAHGKLQLAMPMAE 240

Query: 261 VKEASKLSLMRTVE-SWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRV 319
           VKE S LSLM +    +L  E          RKASGLPEF+KQ+ GSRVTGDPA+ AVR 
Sbjct: 241 VKEISNLSLMVSCHVRFLNLEF-----HVXXRKASGLPEFEKQMDGSRVTGDPARVAVRA 295

Query: 320 MNNGWAAGRLHSTVAGEENFVLSTNRVLR 348
           +NNGWAAGRL+STVAGEENF LS+NRVLR
Sbjct: 296 LNNGWAAGRLNSTVAGEENFFLSSNRVLR 324

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2167644	282	ABCI21 "ATP-binding cassette A	0.643	0.794	0.599	1.3e-68
TAIR|locus:505006098	290	ABCI19 "ATP-binding cassette I	0.643	0.772	0.594	5.1e-67
POMBASE|SPAC20G4.01	280	caf16 "CCR4-Not complex subuni	0.614	0.764	0.424	1.6e-40
ASPGD|ASPL0000006229	274	AN6512 [Emericella nidulans (t	0.586	0.744	0.414	6.1e-39
UNIPROTKB|G4N1E4	290	MGG_09520 "CCR4-Not complex su	0.600	0.720	0.396	3.6e-34
SGD|S000001866	289	CAF16 "Component of the CCR4-N	0.600	0.723	0.363	2.9e-32
CGD|CAL0004927	320	CAF16 [Candida albicans (taxid	0.560	0.609	0.382	6e-32
UNIPROTKB|Q59QD0	320	CAF16 "Potential CCR4-NOT comp	0.560	0.609	0.382	6e-32
GENEDB_PFALCIPARUM|PF14_0321	257	PF14_0321 "ABC transporter, pu	0.525	0.712	0.295	7.8e-23
UNIPROTKB|D5AQY6	254	nikO "Nickel import ATP-bindin	0.646	0.885	0.280	1.3e-12

TAIR|locus:2167644 ABCI21 "ATP-binding cassette A21" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 136/227 (59%), Positives = 168/227 (74%)

Query:    53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTS 111
             P+  DF L L AG RCLLVG+NG+GKTT+LKI+ GKHMV  + +V+VL RSAFHDT L  
Sbjct:    27 PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGKNVVQVLDRSAFHDTELVC 86

Query:   112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRM 171
             SGDLSYLGG W +    AG ++P+Q D SAE MIFGV GIDP RR +LI +LDI+L WRM
Sbjct:    87 SGDLSYLGGSWSKTAGSAG-DIPLQGDFSAEHMIFGVEGIDPFRREKLIDLLDINLQWRM 145

Query:   172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYAT 231
             HKVSDGQRRRVQICMGLL PFKVLLLDE+T                +ECE+RGATI+YAT
Sbjct:   146 HKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECEQRGATIVYAT 205

Query:   232 HIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA-SKLSLMRTVESWL 277
             HIFDGLE W SH+ Y+  G+L+L+  +D++K+  +  +L+  VE+WL
Sbjct:   206 HIFDGLETWASHLAYINGGELKLSAKLDEIKDLKTSPNLLSVVEAWL 252

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0010114 "response to red light" evidence=IEP

GO:0010218 "response to far red light" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:505006098 ABCI19 "ATP-binding cassette I19" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 135/227 (59%), Positives = 163/227 (71%)

Query:    53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTS 111
             P+  DF L L AG RCLLVG+NG+GKTT+LKI+ GKHMV  + +V+VL RSAFHDT L  
Sbjct:    28 PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGKNVVQVLSRSAFHDTQLVC 87

Query:   112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRM 171
             SGDLSYLGG W + V  AG EVP+Q D SAE MIFGV G DP RR +LI +LDI+L WRM
Sbjct:    88 SGDLSYLGGSWSKTVGSAG-EVPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDINLQWRM 146

Query:   172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYAT 231
             HKVSDGQ+RRVQICMGLL PFKVLLLDE+T                +EC++RGATI+YAT
Sbjct:   147 HKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECDQRGATIVYAT 206

Query:   232 HIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA-SKLSLMRTVESWL 277
             HIFDGLE W +H+ Y+  G+L     M  ++E  +  +L+  VESWL
Sbjct:   207 HIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVVESWL 253

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

POMBASE|SPAC20G4.01 caf16 "CCR4-Not complex subunit Caf16 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 99/233 (42%), Positives = 133/233 (57%)

Query:    53 PL-INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
             PL ++  TL L  G R LLVG+NGAGK+T+LK++ GK + +   + V G+  F +    S
Sbjct:    17 PLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHISVGGKDPFRE----S 72

Query:   112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGID-PQRRAELIKVLDIDLSWR 170
             S    YLG EW            I  D+S  ++I  V G    +RR  LI +LDIDL WR
Sbjct:    73 SSAFVYLGTEWVNNPV-------IHRDMSVARLIASVGGDKFAERRDFLISILDIDLRWR 125

Query:   171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYA 230
             MH VSDG+RRRVQ+CMGLL+PF+VLLLDE+T                +E E R ATI+YA
Sbjct:   126 MHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARADLLNFLQEETEVRNATIVYA 185

Query:   231 THIFDGLENWPSHIVYVAHGKLQLAMPMDKV------KEASKLSLMRTVESWL 277
             THIFDGL  WP+H+V+++ G++    P+ K             +L+ T   WL
Sbjct:   186 THIFDGLAEWPTHLVHLSLGRIVDYGPISKFGALMTRSSTGNSALLETCLEWL 238

GO:0005524 "ATP binding" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IC

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IC

GO:0006402 "mRNA catabolic process" evidence=IC

GO:0006810 "transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0030014 "CCR4-NOT complex" evidence=ISO

GO:0030015 "CCR4-NOT core complex" evidence=NAS

ASPGD|ASPL0000006229 AN6512 [Emericella nidulans (taxid:162425)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 90/217 (41%), Positives = 129/217 (59%)

Query:    48 PPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
             P GS+ L  D TL L AG R LL+G+NGAGKTT+L+++ GK +     + +  +  F + 
Sbjct:    17 PDGSSGL-TDVTLGLPAGSRTLLIGANGAGKTTLLRLLSGKRLAPSNTISIANKDPFKEG 75

Query:   108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRRAELIKVLDID 166
                  G ++YLG EW            ++ D+    ++  V G   P+RR EL+++LDID
Sbjct:    76 L---EG-VTYLGVEWVLNSI-------VRTDIDVPTLLASVGGNAYPERRDELVEILDID 124

Query:   167 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGAT 226
             L WRMH VSDG+RRRVQ+ MGLL+P++VLLLDEIT                +E E R  T
Sbjct:   125 LRWRMHAVSDGERRRVQLAMGLLRPWQVLLLDEITVDLDLLSRSNFLSFLKRETETRPCT 184

Query:   227 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263
             I+YATHI D L +WP+H+V++  G ++    ++K KE
Sbjct:   185 IVYATHILDNLAHWPTHLVHMHLGNVRQWGAIEKFKE 221

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|G4N1E4 MGG_09520 "CCR4-Not complex subunit Caf16" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 88/222 (39%), Positives = 125/222 (56%)

Query:    48 PPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
             P  ST + N  +L+L A  R  L+G+NGAGKTT+L+++ GK +     + V G   F + 
Sbjct:    23 PDRSTGISN-ISLSLPARSRTCLIGANGAGKTTLLRLLAGKRLSPRGAITVGGVDPFSEG 81

Query:   108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRRAELIKVLDID 166
                  G ++YLG EW            ++ D+   +++  V G   P RR EL++VLDID
Sbjct:    82 L---EG-VTYLGLEWVLNPI-------VRTDIGVAELLRSVGGDAYPARRDELVEVLDID 130

Query:   167 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGAT 226
              +WRMH VSDG+RRRVQ+ MGL++P+ VLLLDEIT                +E E R AT
Sbjct:   131 TAWRMHAVSDGERRRVQLAMGLVRPWTVLLLDEITVDLDVLSRSGFLDWLKRETESRDAT 190

Query:   227 IIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 268
             ++YATHI D L  WP+H+V++  G ++   P     EA   S
Sbjct:   191 VVYATHILDNLHAWPTHLVHMHLGTVKEWGPAADFLEAQGAS 232

GO:0008150 "biological_process" evidence=ND

SGD|S000001866 CAF16 "Component of the CCR4-NOT transcriptional complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 84/231 (36%), Positives = 125/231 (54%)

Query:    51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110
             S P + D  L +    R L+VG+NGAGK+T+LK++ GKH+     + V G   F   ++ 
Sbjct:    20 SDPSVVDINLQIPWNTRSLVVGANGAGKSTLLKLLSGKHLCLDGKILVNGLDPFSPLSMN 79

Query:   111 SSGD------------LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR-RA 157
                D             +YLG EW          + I  D+   +++  + G D  R R 
Sbjct:    80 QVDDDESVEDSTNYQTTTYLGTEW------CHMSI-INRDIGVLELLKSI-GFDHFRERG 131

Query:   158 E-LIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXX 216
             E L+++LDID+ WRMH++SDGQ+RRVQ+ MGLLKP++VLLLDE+T               
Sbjct:   132 ERLVRILDIDVRWRMHRLSDGQKRRVQLAMGLLKPWRVLLLDEVTVDLDVIARARLLEFL 191

Query:   217 XKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 267
               E E R  +++YATHIFDGL  WP+ + ++  GK+   +   K  E S++
Sbjct:   192 KWETETRRCSVVYATHIFDGLAKWPNQVYHMKSGKIVDNLDYQKDVEFSEV 242

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP;IPI

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

CGD|CAL0004927 CAF16 [Candida albicans (taxid:5476)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 81/212 (38%), Positives = 120/212 (56%)

Query:    49 PGSTPL-INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
             P S  + + DF L +  G   L+VG NGAGK+T+L+I+ GK +++   +K+ G   FH +
Sbjct:    22 PNSKKIGLQDFNLAIPWGTTNLVVGPNGAGKSTLLRILAGKTLIKKGHLKLGGFDPFHFS 81

Query:   108 ALT---SSGDLS----YLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ-RRAEL 159
             +     ++ D++    YLG EW            I+ D+    ++  + G   Q RR  L
Sbjct:    82 SQRHEQANSDINNYITYLGTEWATNSI-------IKRDIPVNLLLASIGGETYQDRRNLL 134

Query:   160 IKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKE 219
             I +LDID SW M  +SDG+RRRVQI MGL+KP+K+LLLDE+T                +E
Sbjct:   135 IDILDIDPSWSMLNISDGERRRVQIAMGLVKPWKLLLLDEVTIDLDVVVRSKLLNYLKQE 194

Query:   220 CEERGATIIYATHIFDGL-ENWPSHIVYVAHG 250
             C+ER  T++YATHIFDGL   W   ++++  G
Sbjct:   195 CQERNCTVVYATHIFDGLGHKWCDRVIHIDAG 226

GO:0005524 "ATP binding" evidence=ISS

GO:0030014 "CCR4-NOT complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q59QD0 CAF16 "Potential CCR4-NOT complex associated factor Caf16p" [Candida albicans SC5314 (taxid:237561)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 81/212 (38%), Positives = 120/212 (56%)

Query:    49 PGSTPL-INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
             P S  + + DF L +  G   L+VG NGAGK+T+L+I+ GK +++   +K+ G   FH +
Sbjct:    22 PNSKKIGLQDFNLAIPWGTTNLVVGPNGAGKSTLLRILAGKTLIKKGHLKLGGFDPFHFS 81

Query:   108 ALT---SSGDLS----YLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ-RRAEL 159
             +     ++ D++    YLG EW            I+ D+    ++  + G   Q RR  L
Sbjct:    82 SQRHEQANSDINNYITYLGTEWATNSI-------IKRDIPVNLLLASIGGETYQDRRNLL 134

Query:   160 IKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKE 219
             I +LDID SW M  +SDG+RRRVQI MGL+KP+K+LLLDE+T                +E
Sbjct:   135 IDILDIDPSWSMLNISDGERRRVQIAMGLVKPWKLLLLDEVTIDLDVVVRSKLLNYLKQE 194

Query:   220 CEERGATIIYATHIFDGL-ENWPSHIVYVAHG 250
             C+ER  T++YATHIFDGL   W   ++++  G
Sbjct:   195 CQERNCTVVYATHIFDGLGHKWCDRVIHIDAG 226

GO:0005524 "ATP binding" evidence=ISS

GENEDB_PFALCIPARUM|PF14_0321 PF14_0321 "ABC transporter, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 58/196 (29%), Positives = 101/196 (51%)

Query:    55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
             + +  L    G R L+ G NGAGK+T+L II GK +++   V +  + AFHDT +  S  
Sbjct:    25 LQNVNLCFERGMRILVCGKNGAGKSTLLSIIAGKKLIKENEVLIFNKQAFHDTDI--SNK 82

Query:   115 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKV 174
             + Y+G  W  E A         M++S +   F       +R   L+K+ ++D +  +  +
Sbjct:    83 IGYVGEWWSEEYA---------MNISIKDFCFNYEYT--KRYKNLLKLFELDENKIISNL 131

Query:   175 SDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIF 234
             S G+R++VQI + ++    + + DE T                KEC +  + +IY+THIF
Sbjct:   132 SKGERKKVQIMVNIIVRKDIYIFDEATESLDLVSRKLLLEFLKKECIKYNSIVIYSTHIF 191

Query:   235 DGLENWPSHIVYVAHG 250
             D ++ W +H++Y++ G
Sbjct:   192 DHMDKWSTHVLYLSEG 207

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|D5AQY6 nikO "Nickel import ATP-binding protein NikO" [Rhodobacter capsulatus SB 1003 (taxid:272942)]

 Score = 180 (68.4 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 72/257 (28%), Positives = 121/257 (47%)

Query:    29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
             P  E+  ++F Y G+         P +N   LTL  G R  L+G+NG+GK+T+L+++ G 
Sbjct:     3 PAFELQGVQFAYKGV---------PALNGLDLTLPLGRRTALLGANGSGKSTLLRLLDGL 53

Query:    89 HMVEPEMVKVLGRSAFHDTALTSSGDLSYLGG-EWRREVAFAGFEVP-IQMDVSA--EKM 144
                 P   ++   SAF  T LT +          +RR V F  F+ P +Q+   +  +++
Sbjct:    54 QF--PAAGRI---SAF-GTPLTEAMFTDEAAAIAFRRRVGFV-FQNPEVQLFCPSVFDEL 106

Query:   145 IFGVAGID-PQRR-----AELIKVLDID-LSWRM-HKVSDGQRRRVQICMGLLKPFKVLL 196
              FG   +  P+ R     A  I    +  L+ R  H++S G+++RV +   L+   +VLL
Sbjct:   107 AFGPLQLHWPKERIRARVARAIAQFGLGPLAGRPPHRLSGGEKKRVALASVLILDPEVLL 166

Query:   197 LDEITXXXXXXXXXXXXXXXXKECEER--GATIIYATHIFDGLENWPSHIVYVAHGKLQL 254
             LDE T                 E   R  G T+I+++H  D +     H+V +  GK+  
Sbjct:   167 LDEPTAALDPQATDDIAALLETEFGARNPGRTLIFSSHDLDLVARIADHVVVLEAGKVAA 226

Query:   255 AMPMDKVKEASKLSLMR 271
             A P  +V   ++ +L+R
Sbjct:   227 AGPAAEV--LARTALLR 241

GO:0015675 "nickel cation transport" evidence=IDA

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LZ98	AB20I_ARATH	No assigned EC number	0.8463	0.9310	0.9878	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022557001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (329 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	1e-55
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	6e-28
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-27
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-25
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-24
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	5e-24
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	8e-21
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-19
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	2e-19
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	3e-19
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	3e-19
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	5e-19
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	6e-19
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-17
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-17
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	4e-17
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	9e-17
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-16
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-16
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-16
COG4988	559	COG4988, CydD, ABC-type transport system involved	5e-16
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	7e-16
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	8e-16
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-15
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-15
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-15
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	9e-15
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	1e-14
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	4e-14
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	5e-14
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	1e-13
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	2e-13
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	2e-13
COG4987	573	COG4987, CydC, ABC-type transport system involved	3e-13
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-13
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	4e-13
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	4e-13
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	5e-13
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	8e-13
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	8e-13
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	9e-13
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-12
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-12
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	2e-12
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	2e-12
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	2e-12
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-12
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	3e-12
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	4e-12
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	4e-12
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	4e-12
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	4e-12
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	5e-12
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	7e-12
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-11
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	1e-11
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-11
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	1e-11
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-11
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-11
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	2e-11
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-11
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	3e-11
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	4e-11
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	4e-11
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	4e-11
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	5e-11
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	5e-11
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	9e-11
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-10
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	1e-10
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	1e-10
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	2e-10
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	2e-10
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	2e-10
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-10
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	2e-10
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	3e-10
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	3e-10
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	4e-10
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	4e-10
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	4e-10
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	4e-10
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	5e-10
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	7e-10
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	7e-10
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	7e-10
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	8e-10
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	8e-10
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	9e-10
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	9e-10
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	1e-09
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	2e-09
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	2e-09
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-09
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	3e-09
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	3e-09
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	3e-09
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	4e-09
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	4e-09
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	4e-09
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	5e-09
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	7e-09
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	8e-09
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	9e-09
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-08
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	1e-08
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-08
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	1e-08
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-08
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-08
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-08
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	2e-08
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-08
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	4e-08
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	4e-08
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	5e-08
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	5e-08
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	5e-08
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	6e-08
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	6e-08
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	7e-08
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	7e-08
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	8e-08
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	8e-08
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	9e-08
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	1e-07
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	1e-07
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-07
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	1e-07
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-07
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	1e-07
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	2e-07
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	2e-07
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	2e-07
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	2e-07
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-07
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-07
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-07
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	2e-07
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	4e-07
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	5e-07
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	6e-07
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	6e-07
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	6e-07
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	7e-07
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	8e-07
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	8e-07
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	8e-07
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	8e-07
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	8e-07
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	9e-07
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	1e-06
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	1e-06
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	1e-06
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-06
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	2e-06
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-06
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-06
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	2e-06
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	2e-06
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	3e-06
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	3e-06
pfam00005	119	pfam00005, ABC_tran, ABC transporter	3e-06
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	3e-06
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	3e-06
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	3e-06
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	3e-06
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	5e-06
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	5e-06
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	5e-06
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	5e-06
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	5e-06
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	6e-06
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	7e-06
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	7e-06
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	7e-06
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	7e-06
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	9e-06
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	1e-05
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	1e-05
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-05
pfam13304	256	pfam13304, AAA_21, AAA domain	1e-05
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	1e-05
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-05
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	1e-05
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	1e-05
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	1e-05
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-05
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	1e-05
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-05
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	2e-05
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	2e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	2e-05
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	2e-05
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	2e-05
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	2e-05
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	3e-05
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	3e-05
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-05
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	3e-05
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	3e-05
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	3e-05
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	4e-05
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	4e-05
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	4e-05
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	4e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	5e-05
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	5e-05
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	5e-05
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	5e-05
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	6e-05
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	6e-05
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	7e-05
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	7e-05
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	8e-05
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	8e-05
COG4598	256	COG4598, HisP, ABC-type histidine transport system	8e-05
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	8e-05
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	9e-05
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	9e-05
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	1e-04
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	1e-04
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	1e-04
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	1e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	2e-04
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	2e-04
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-04
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	2e-04
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	2e-04
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	2e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-04
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	2e-04
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-04
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	2e-04
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	3e-04
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	5e-04
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	5e-04
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	6e-04
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	6e-04
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	8e-04
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	9e-04
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	0.001
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	0.001
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	0.001
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	0.002
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	0.002
COG5265	497	COG5265, ATM1, ABC-type transport system involved	0.002
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	0.002
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	0.002
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	0.003
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	0.003
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	0.003
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.003
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	0.003
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	0.004
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.004
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	0.004
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	0.004
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	0.004
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	0.004
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	0.004
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.004

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  184 bits (468), Expect = 1e-55
 Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 34/273 (12%)

Query: 46  HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH 105
           H    S   + D +  +  G+    +G+NGAGK+T LK++ G  +     V+V G+  F 
Sbjct: 31  HRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90

Query: 106 D--TALTSSGDL--SYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGID-PQRRAELI 160
                L S G +    L   W         ++P    +   K+I+ +   +  +R   L 
Sbjct: 91  RREEYLRSIGLVMGQKLQLWW---------DLPALDSLEVLKLIYEIPDDEFAERLDFLT 141

Query: 161 KVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 218
           ++LD++  L W + K+S GQR R ++   LL P KVL LDE TV LDV A+A++  FL++
Sbjct: 142 EILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201

Query: 219 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKL-----------------QLAMPMDKV 261
             EER AT++  THIFD +      ++ +  G+L                 + ++ + + 
Sbjct: 202 YNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQA 261

Query: 262 KEASKLSLMRTVESWLRKERDEERKRRRERKAS 294
           K  S+L+L+  V         +    R E    
Sbjct: 262 KSLSQLALLGDVTIE-EGLNIKNDVSREESADI 293

Length = 325

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  107 bits (271), Expect = 6e-28
 Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 39/235 (16%)

Query: 32  EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV 91
           E+  L F+YP        G+ P ++D +LT+  G+  L+VG NG+GK+T+L+++ G   +
Sbjct: 1   ELKNLSFSYPD-------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNG---L 50

Query: 92  EPEM---VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP---IQMDVSAEKMI 145
                  V V G+     +             E RR+V    F+ P          E++ 
Sbjct: 51  LGPTSGEVLVDGKDLTKLSL-----------KELRRKVGLV-FQNPDDQFFGPTVEEEVA 98

Query: 146 FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQI-CMGLLKPFKVLL 196
           FG+   G+      +R  E ++++ ++         +S GQ++RV I  +  + P  +LL
Sbjct: 99  FGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP-DILL 157

Query: 197 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
           LDE T  LD   R +LL  L+K   E G TII  TH  D L      ++ +  GK
Sbjct: 158 LDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  108 bits (273), Expect = 2e-27
 Identities = 63/298 (21%), Positives = 130/298 (43%), Gaps = 45/298 (15%)

Query: 29  PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
             +E+  L   Y G            ++  +  +  G+   L+G NGAGKTT+LKI+ G 
Sbjct: 3   EVIEVRNLTKKYGG--------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG- 53

Query: 89  HMVEPEMVKVLGRSAFHDTALTSSGDLSYLG-------GEWRREVAFAGFEVPIQMDVSA 141
            +++P                 +SG++  LG        + RR + +   E  +  +++ 
Sbjct: 54  -LLKP-----------------TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTV 95

Query: 142 E------KMIFGVAG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL-KP 191
                    ++G++     +R  EL+++  ++   + ++  +S G ++R+ I + LL  P
Sbjct: 96  RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP 155

Query: 192 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
            ++L+LDE T  LD  +R ++   LR+  +E G TI+ +THI +  E     ++ +  GK
Sbjct: 156 -ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGK 214

Query: 252 LQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVT 309
           +      +++KE      +  +E    +  +     +  +    L E  + +    V 
Sbjct: 215 IIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEALLEEGVK 272

Length = 293

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  100 bits (252), Expect = 1e-25
 Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 53/224 (23%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  L   Y         G    ++D +LT+  G+   L+G NGAGKTT++KII G  +
Sbjct: 1   IEVRNLSKRY---------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG--L 49

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG 150
           ++P                  SG++  LG + ++E                 K   G   
Sbjct: 50  LKP-----------------DSGEIKVLGKDIKKEPEEV-------------KRRIGYL- 78

Query: 151 IDPQRRAELIKVLDIDLS-WRMHKVSDGQRRRVQICMGLL-KPFKVLLLDEITVDLDVLA 208
             P+  +     L  +L+     K+S G ++R+ +   LL  P ++L+LDE T  LD  +
Sbjct: 79  --PEEPS-----LYENLTVRENLKLSGGMKQRLALAQALLHDP-ELLILDEPTSGLDPES 130

Query: 209 RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           R +    LR+  +E G TI+ ++HI +  E     +  + +G++
Sbjct: 131 RREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 97.3 bits (243), Expect = 2e-24
 Identities = 55/202 (27%), Positives = 83/202 (41%), Gaps = 54/202 (26%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    +++ +LTL AG+   LVG NG+GK+T+L+ I G  +++P   ++L         +
Sbjct: 10  GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG--LLKPTSGEIL----IDGKDI 63

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSW 169
                      E RR + +                        PQ               
Sbjct: 64  AKLPLE-----ELRRRIGYV-----------------------PQ--------------- 80

Query: 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 229
               +S GQR+RV +   LL    +LLLDE T  LD  +R  LL  LR+  EE G T+I 
Sbjct: 81  ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVII 135

Query: 230 ATHIFDGLENWPSHIVYVAHGK 251
            TH  +  E     ++ +  GK
Sbjct: 136 VTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 98.1 bits (245), Expect = 5e-24
 Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 38/237 (16%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E   L F YPG            + D +L +  G+R LL+G NG+GK+T+LK++ G  +
Sbjct: 4   IEAENLSFRYPG--------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--L 53

Query: 91  VEPE--MVKVLGRSAFHDTALTS----------SGDLSYLGGEWRREVAFAGFEVPIQMD 138
           ++P    V V G     + +L            + D    G     EVAF        + 
Sbjct: 54  LKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG----LENLG 109

Query: 139 VSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGL-LKPFKVL 195
           +  E++         +R AE ++++ ++  L      +S GQ++RV I   L + P ++L
Sbjct: 110 LPREEI--------EERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP-EIL 160

Query: 196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           LLDE T  LD   R +LL  L+K  EE G TII  TH  + +  +   +V +  GK+
Sbjct: 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217

Length = 235

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 89.8 bits (223), Expect = 8e-21
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 22/217 (10%)

Query: 57  DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLS 116
           D +     G+   L+G NGAGKTT+L++I    ++ P+  KV               D  
Sbjct: 20  DVSFEAEEGEITGLLGENGAGKTTLLRMIAT--LLIPDSGKVT----------IDGVDTV 67

Query: 117 YLGGEWRREVAFAGFEVPIQMDVSAEK------MIFGVAGIDPQRR-AELIKVLDID--L 167
                 RR++     E  +   ++A +       + G++  + + R AEL K L +   L
Sbjct: 68  RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL 127

Query: 168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 227
             R+ + S G +++V I   L+    +L+LDE T  LD+  R     F+++  +  G  +
Sbjct: 128 DRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ-LKNEGRAV 186

Query: 228 IYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 264
           I+++HI   +E     ++ +  G++ L   ++ +   
Sbjct: 187 IFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223

Length = 245

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 48/252 (19%)

Query: 31  VEINALKFTY------PGIDG------HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGK 78
           +E++ L  +Y      PG+ G               +   + T+  G+    +G NGAGK
Sbjct: 1   IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60

Query: 79  TTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGG-EWRREVAFA-------G 130
           TT LKI+ G  +++P                 +SG++   G   W+R   F        G
Sbjct: 61  TTTLKILSG--LLQP-----------------TSGEVRVAGLVPWKRRKKFLRRIGVVFG 101

Query: 131 FEVPIQMDVSAEK---MIFGVAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRR 181
            +  +  D+       ++  +  + P    +R  EL ++LD++  L   + ++S GQR R
Sbjct: 102 QKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMR 161

Query: 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 241
            +I   LL   ++L LDE T+ LDV+A+ ++  FL++   ERG T++  +H    +E   
Sbjct: 162 AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALA 221

Query: 242 SHIVYVAHGKLQ 253
             ++ +  G+L 
Sbjct: 222 RRVLVIDKGRLL 233

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 85.7 bits (213), Expect = 2e-19
 Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 21/211 (9%)

Query: 29  PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
             +E+  L F Y         G  P+++D + ++  G+   ++G NG+GK+T+LK + G 
Sbjct: 1   MMLEVENLSFGY---------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL 51

Query: 89  HMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM---- 144
              +   V + G+     +    +  L+Y+      +   A F + +   V   +     
Sbjct: 52  LKPKSGEVLLDGKDIASLSPKELAKKLAYVP-----QSPSAPFGLTVYELVLLGRYPHLG 106

Query: 145 IFGVAGIDPQRRA-ELIKVLDI-DLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 201
           +FG    + +    E +++L +  L+ R + ++S G+R+RV I   L +   +LLLDE T
Sbjct: 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPT 166

Query: 202 VDLDVLARADLLRFLRKECEERGATIIYATH 232
             LD+  + ++L  LR    E+G T++   H
Sbjct: 167 SHLDIAHQIEVLELLRDLNREKGLTVVMVLH 197

Length = 258

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 85.4 bits (212), Expect = 3e-19
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 45/259 (17%)

Query: 28  KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
              + +  L   Y G        +   +N+ +L +  G+   +VG +G+GK+T+ +++ G
Sbjct: 1   MTLLSVRNLSIVYGG-----GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55

Query: 88  KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM---------- 137
             + +P                 SSG +   G     +     F  P+QM          
Sbjct: 56  --LEKP-----------------SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96

Query: 138 ------DVSAEKMIFGVAGIDPQRRAELIKVLDIDLSW---RMHKVSDGQRRRVQICMGL 188
                  + +E +         QR AEL+  + +  S+   R H++S GQR+R+ I   L
Sbjct: 97  PRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL 156

Query: 189 -LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247
             +P K+L+LDE T  LDV  +A +L  L +  +ERG T ++ +H    +E+    I  +
Sbjct: 157 IPEP-KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVM 215

Query: 248 AHGKLQLAMPMDKVKEASK 266
            +G++    P +++     
Sbjct: 216 DNGQIVEIGPTEELLSHPS 234

Length = 252

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 83.6 bits (208), Expect = 3e-19
 Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 55/206 (26%)

Query: 32  EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV 91
           E+  L   Y         G   +++D +L++ AG+   ++G NGAGK+T+LK + G  ++
Sbjct: 1   EVENLSVGY---------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG--LL 49

Query: 92  EPEM--VKVLGRSAFHDTALTSSGDLSYLGG-EWRREVAFAGFEVPIQMDVSAEKMIFGV 148
           +P    + + G+            DL+ L   E  R++A+                    
Sbjct: 50  KPSSGEILLDGK------------DLASLSPKELARKIAYV------------------- 78

Query: 149 AGIDPQRRAELIKVLDI-DLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 206
               PQ     +++L +  L+ R  +++S G+R+RV +   L +   +LLLDE T  LD+
Sbjct: 79  ----PQ----ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130

Query: 207 LARADLLRFLRKECEERGATIIYATH 232
             + +LL  LR+   ERG T++   H
Sbjct: 131 AHQIELLELLRRLARERGKTVVMVLH 156

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 84.1 bits (209), Expect = 5e-19
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 47/226 (20%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  L  ++P        GS   ++D + ++  G+   LVG +G+GK+T+ + I G  +
Sbjct: 2   LEVKNLSVSFPT-----GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG--L 54

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM------------- 137
           ++P    ++    F         DL  L    R+          IQM             
Sbjct: 55  LKPTSGSII----FDGK------DLLKLSRRLRKI-----RRKEIQMVFQDPMSSLNPRM 99

Query: 138 ---DVSAEKMIFGVAGIDPQRRAELIKVLD--IDLSWRM-----HKVSDGQRRRVQICMG 187
              +  AE +         + R E + +L   + L   +     H++S GQR+RV I   
Sbjct: 100 TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159

Query: 188 L-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           L L P K+L+ DE T  LDV  +A +L  L+K  EE G T+++ TH
Sbjct: 160 LALNP-KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH 204

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 84.3 bits (209), Expect = 6e-19
 Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 45/210 (21%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH---- 105
           G+   ++D + T+  G    L+G NGAGK+T+  ++   ++ +   + V G         
Sbjct: 12  GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA 71

Query: 106 --------------DTALTSSGDLSY---LGGEWRREVAFAGFEVPIQMDVSAEKMIFGV 148
                         D  L+   +L Y   L G  R E      E+  ++ ++        
Sbjct: 72  ALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAE------- 124

Query: 149 AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 208
                 R  +           ++ +++ G RRRV+I   LL    +LLLDE TV LD  +
Sbjct: 125 ------RADD-----------KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167

Query: 209 RADLLRFLRKECEERGATIIYATHIFDGLE 238
           RA +   +R    ++G ++++ATH+ D +E
Sbjct: 168 RAAITAHVRALARDQGLSVLWATHLVDEIE 197

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 80.3 bits (199), Expect = 1e-17
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 40/201 (19%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           GS   ++D +LT+  G+   L+G +G GKTT+L++I G  +  P                
Sbjct: 11  GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG--LERP---------------- 52

Query: 110 TSSGDLSYLGGE-------WRREVAFAGFEVPI---QMDVSAEKMIFG--VAGID-PQRR 156
             SG++  + G         RR +    F+       + V AE + FG  + G+   + R
Sbjct: 53  -DSGEI-LIDGRDVTGVPPERRNIGMV-FQDYALFPHLTV-AENIAFGLKLRGVPKAEIR 108

Query: 157 A---ELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 211
           A   EL++++ ++  L+   H++S GQ++RV +   L +   +LLLDE    LD   R +
Sbjct: 109 ARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168

Query: 212 LLRFLRKECEERGATIIYATH 232
           L   L++   E G T IY TH
Sbjct: 169 LREELKELQRELGITTIYVTH 189

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 80.2 bits (199), Expect = 1e-17
 Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 41/224 (18%)

Query: 48  PPGSTPLINDFTLTLNAGDRCL-LVGSNGAGKTTILKIIGG------------KHMVEPE 94
             G+ P ++D +L +  G+    L+G NGAGKTT LK++ G             + +  +
Sbjct: 11  KKGTKPAVDDLSLNVYKGE-IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD 69

Query: 95  MVKVLGRSAF---HDTALTSSGDLSYLGGEWRREVAFAGFE-VPI-QMDVSAEKMIFGVA 149
                    +    D           L         +A  + +P  ++    E ++  + 
Sbjct: 70  RKAARQSLGYCPQFDALFD------ELTVREHLRF-YARLKGLPKSEIKEEVELLLRVL- 121

Query: 150 GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 209
                    L    +     R   +S G +R++ + + L+    VLLLDE T  LD  +R
Sbjct: 122 --------GLTDKAN----KRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASR 169

Query: 210 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
             +   + +  + R  +II  TH  D  E     I  ++ GKL+
Sbjct: 170 RAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLR 211

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 78.9 bits (195), Expect = 4e-17
 Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 26/194 (13%)

Query: 70  LVGSNGAGKTTILKIIGGKHMVEPE--MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA 127
           L+G NGAGKTT L+++ G  ++EP+     V G     + A            E RR + 
Sbjct: 36  LLGPNGAGKTTTLRMLAG--LLEPDAGFATVDGFDVVKEPA------------EARRRLG 81

Query: 128 F--AGFEVPIQMDVSAEKMIFG-VAGIDPQ----RRAELIKVLDID--LSWRMHKVSDGQ 178
           F      +  ++        F  + G+       R  EL   L ++  L  R+   S G 
Sbjct: 82  FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGM 141

Query: 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 238
           R++V I   L+    VLLLDE T  LDV+A   L  F+R+     G  I+++THI   +E
Sbjct: 142 RQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVE 200

Query: 239 NWPSHIVYVAHGKL 252
                +V +  G++
Sbjct: 201 RLCDRVVVLHRGRV 214

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 76.7 bits (190), Expect = 9e-17
 Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 71/213 (33%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E   + F+YPG          P++ D +LT+  G++  +VG +G+GK+T+LK++    +
Sbjct: 1   IEFKNVSFSYPG-------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLR--L 51

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGG---------EWRREVAFAGFEVPIQMDVSA 141
            +P                  SG++  + G           R+ +A+    VP Q     
Sbjct: 52  YDPT-----------------SGEI-LIDGVDLRDLDLESLRKNIAY----VP-Q----- 83

Query: 142 EKMIFGVAGIDPQRRAELIK--VLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE 199
                     DP   +  I+  +L           S GQR+R+ I   LL+   +L+LDE
Sbjct: 84  ----------DPFLFSGTIRENIL-----------SGGQRQRIAIARALLRDPPILILDE 122

Query: 200 ITVDLDVLARADLLRFLRKECEERGATIIYATH 232
            T  LD    A +L  LR   + +  T+I   H
Sbjct: 123 ATSALDPETEALILEALRALAKGK--TVIVIAH 153

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 41/227 (18%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL--- 109
            ++ D +  +N G+   +VG NGAGKTT+L ++ G+H      V +LGR       +   
Sbjct: 45  KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104

Query: 110 -------TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGI-----DPQRRA 157
                  +S     +   E  R+V  +GF              F   GI       +  A
Sbjct: 105 RKRIGLVSSELHERFRVRETVRDVVLSGF--------------FASIGIYQEDLTAEDLA 150

Query: 158 ELIKVLD----IDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 212
               +L+      L       +S G++RRV I   L+K  ++L+LDE    LD++AR  L
Sbjct: 151 AAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQL 210

Query: 213 LRFLRKECEERGAT-IIYATHIFDGLENWPSHIV------YVAHGKL 252
           L  L +     GA  +++ TH  + +    +H +       VA GKL
Sbjct: 211 LNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257

Length = 257

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 76.1 bits (188), Expect = 2e-16
 Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 34/202 (16%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   ++ND +L + AG+   L+G +G+GK+T+L+ I G  + EP                
Sbjct: 11  GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG--LEEP---------------- 52

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSW 169
             SG +   G     ++     E+P         M+F    + P        VL+     
Sbjct: 53  -DSGSILIDG----EDLTDLEDELPPLRRRIG--MVFQDFALFPHL-----TVLEN---- 96

Query: 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 229
               +S GQ++RV +   L     VLLLDE T  LD + R ++   L+    + G T++ 
Sbjct: 97  IALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVL 156

Query: 230 ATHIFDGLENWPSHIVYVAHGK 251
            TH  D        +V +  GK
Sbjct: 157 VTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 78.8 bits (195), Expect = 4e-16
 Identities = 50/226 (22%), Positives = 85/226 (37%), Gaps = 32/226 (14%)

Query: 26  NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
              P +E+  L   +    G       P + D +  +  G+   +VG +G+GK+T+   +
Sbjct: 1   MMSPLLEVENLTVEFATDGG-----RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALAL 55

Query: 86  GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREV-----------AFAGF-EV 133
            G  ++        G             DL  L     R++                  V
Sbjct: 56  MG--LLPEGGRITSGEVILDGR------DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPV 107

Query: 134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLD---IDLSWRM----HKVSDGQRRRVQICM 186
               D   E +     G   + R   +++L+   +    R     H++S G R+RV I M
Sbjct: 108 MTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAM 167

Query: 187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
            L    K+L+ DE T  LDV  +A +L  L+    E G  +++ TH
Sbjct: 168 ALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH 213

Length = 539

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 78.8 bits (195), Expect = 5e-16
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 28/245 (11%)

Query: 18  ERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAG 77
                    ++P +EI+    ++   DG       P ++D  LT+ AG    LVG++GAG
Sbjct: 306 GSGEKAEVANEPPIEISLENLSFRYPDG------KPALSDLNLTIKAGQLTALVGASGAG 359

Query: 78  KTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLG-------GEWRREVAFAG 130
           K+T+L ++ G        ++V G      +       +S++        G  R  +  A 
Sbjct: 360 KSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLAR 419

Query: 131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV---LDIDLSWRMHKVSDGQRRRVQICMG 187
                    ++++ I      D     E +     LD  +      +S GQ +R+ +   
Sbjct: 420 -------PDASDEEIIAAL--DQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARA 470

Query: 188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247
           LL P  +LLLDE T  LD      +L+ L++  +++  T++  TH  +   +    IV +
Sbjct: 471 LLSPASLLLLDEPTAHLDAETEQIILQALQELAKQK--TVLVITHRLEDAADA-DRIVVL 527

Query: 248 AHGKL 252
            +G+L
Sbjct: 528 DNGRL 532

Length = 559

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 78.1 bits (193), Expect = 7e-16
 Identities = 67/300 (22%), Positives = 115/300 (38%), Gaps = 56/300 (18%)

Query: 29  PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
             + +  L   Y            PL+ + +LTLN G+R  LVG NGAGK+T+LKI+ G+
Sbjct: 2   SMITLENLSLAYGD---------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE 52

Query: 89  ------HMVEPEMVKV----------LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFE 132
                  +  P+ ++V            ++   D  +   G+L  L  E     A     
Sbjct: 53  LEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVL-DYVIEGFGELRELLAELEEAYALLADP 111

Query: 133 VPIQMDVSAEKMIFGVAGIDPQR-RAELIKVLD----IDLSWRMHKVSDGQRRRVQICMG 187
               +      +      +D     A   + L      D    +  +S G RRRV +   
Sbjct: 112 DDELLAELEALL----EELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARA 167

Query: 188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247
           LL+   +LLLDE T  LD+ +   L  +L++       T+I  +H    L+N  +HI+ +
Sbjct: 168 LLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPGTVIVVSHDRYFLDNVATHILEL 223

Query: 248 AHGKL--------------QLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKA 293
             GKL                 +  +      +   +   + W+R+ +       + +KA
Sbjct: 224 DRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGK---AAASKAKKA 280

Length = 530

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 76.9 bits (190), Expect = 8e-16
 Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 54/251 (21%)

Query: 30  TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
            +E+  ++ ++         GS  ++ D  L +  G+  +L+G +G GK+T+L++I G  
Sbjct: 3   ELELKNVRKSF---------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-- 51

Query: 90  MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGE-------WRREVAFAGFEVPI---QMDV 139
           + EP                 +SG++  + G         +R +A   F+       M V
Sbjct: 52  LEEP-----------------TSGEI-LIDGRDVTDLPPEKRGIAMV-FQNYALYPHMTV 92

Query: 140 SAEKMIFG--VAGIDPQ----RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKP 191
             E + FG  + G+       R  E+ K+L ++  L+ +  ++S GQR+RV +   L++ 
Sbjct: 93  -YENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK 151

Query: 192 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS--HIVYVAH 249
            KV LLDE   +LD   R  +   ++K  E  G T IY TH  D +E       IV +  
Sbjct: 152 PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH--DQVEAMTLADRIVVMND 209

Query: 250 GKL-QLAMPMD 259
           G++ Q+  P++
Sbjct: 210 GRIQQVGTPLE 220

Length = 338

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 66/251 (26%), Positives = 103/251 (41%), Gaps = 46/251 (18%)

Query: 8   TPFHKTEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPP--PGSTPLINDFTLTLNAG 65
            P    E+           ++P + +  L   Y    G      G    ++D +  L  G
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317

Query: 66  DRCLLVGSNGAGKTTILKIIGGKHMVEPE--MVKVLGRSAFHDTALTSSGDLSYLGGEWR 123
           +   LVG +G+GK+T+ +I+ G  ++ P    +   G     D  LT        GGE R
Sbjct: 318 ETLGLVGESGSGKSTLARILAG--LLPPSSGSIIFDG----QDLDLT--------GGELR 363

Query: 124 REVAFAGFEVPIQM----------------DVSAEKMIFGVAGIDPQRRAELIKVLD-ID 166
           R          IQM                D+ AE +     G   +RRA + ++L+ + 
Sbjct: 364 R------LRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417

Query: 167 LSWRM-----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 221
           L         H++S GQR+RV I   L    K+L+LDE    LDV  +A +L  L+   E
Sbjct: 418 LPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477

Query: 222 ERGATIIYATH 232
           E G T ++ +H
Sbjct: 478 ELGLTYLFISH 488

Length = 539

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 29/197 (14%)

Query: 52  TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE--MVKVLGRSAFHDTAL 109
              + D  L + AG+   +VG +G+GK+T+L ++GG  + +P    V + G+    D   
Sbjct: 18  VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG--LDKPTSGEVLINGK----DLTK 71

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQM----DVSAEK---MIFGVAGIDPQRRAELIKV 162
            S  +L+ L    R+++ F    V        D++  +   +   +AG    RR    + 
Sbjct: 72  LSEKELAKLR---RKKIGF----VFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEE 124

Query: 163 LD--IDLSWRMHK-----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 215
           L   + L  R+ K     +S GQ++RV I   L+   K++L DE T +LD     ++L  
Sbjct: 125 LLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184

Query: 216 LRKECEERGATIIYATH 232
           LR+  +ERG TII  TH
Sbjct: 185 LRELNKERGKTIIMVTH 201

Length = 226

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 36/218 (16%)

Query: 29  PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
           P++E + +   YPG          P +   + T+  G+R  LVG +GAGK+T+L ++ G 
Sbjct: 320 PSLEFSGVSVAYPG--------RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF 371

Query: 89  HMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-AEKMIFG 147
                  + V G       A +           WR ++A+   + P     + AE +   
Sbjct: 372 VDPTEGSIAVNGVPLADADADS-----------WRDQIAWVP-QHPFLFAGTIAENIRLA 419

Query: 148 VAGIDPQ--RRA-------ELIKVL----DIDLSWRMHKVSDGQRRRVQICMGLLKPFKV 194
                    R A       E +  L    D  +      +S GQ +R+ +    L+   +
Sbjct: 420 RPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPL 479

Query: 195 LLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           LLLDE T  LD    A++L  LR     +G T++  TH
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALRALA--QGRTVLLVTH 515

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 55/242 (22%), Positives = 99/242 (40%), Gaps = 49/242 (20%)

Query: 12  KTEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLV 71
             E+E ++ +  +   +  +E   + F Y        P   P++ D +L +  G++  +V
Sbjct: 453 PPEQEGDKTLIHLPKLQGEIEFENVSFRYG-------PDDPPVLEDLSLEIPPGEKVAIV 505

Query: 72  GSNGAGKTTILKIIGGKHMVEPEMVKVL--GRSAFHDTALTSSGDLSYLGGEWRRE---- 125
           G +G+GK+T+LK++ G  + +P+  ++L  G             DL+ +     R     
Sbjct: 506 GRSGSGKSTLLKLLLG--LYKPQQGRILLDGV------------DLNDIDLASLRRQVGY 551

Query: 126 ---------------VAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWR 170
                          +A    E   +  + A ++    AG        L    D  +   
Sbjct: 552 VLQDPFLFSGSIRENIALGNPEATDEEIIEAAQL----AGAHEFIEN-LPMGYDTPVGEG 606

Query: 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 230
              +S GQR+R+ +   LL   K+LLLDE T  LD    A +L+ L +  + R  T+I  
Sbjct: 607 GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGR--TVIII 664

Query: 231 TH 232
            H
Sbjct: 665 AH 666

Length = 709

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 51/222 (22%), Positives = 100/222 (45%), Gaps = 29/222 (13%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
           PG    + D  L +N G+   ++G +GAGK+T+L+ + G  +V+P   ++L         
Sbjct: 14  PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG--LVDPTSGEILFNG--VQIT 69

Query: 109 LTSSGDLSYLGGEWRREVA--FAGFEVPIQMDV------------SAEKMIFGVAGIDPQ 154
                +L     + RR++   F  F +  ++ V            S  + +FG+     +
Sbjct: 70  KLKGKELR----KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL--FSKE 123

Query: 155 RRAELIKVLD-IDLS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 209
            +A+ +  L+ + +      R   +S GQ++RV I   L++  K++L DE    LD  + 
Sbjct: 124 DKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESA 183

Query: 210 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
             ++  L+   +E G T+I   H  D  + +   I+ +  G+
Sbjct: 184 KKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225

Length = 258

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 70.7 bits (174), Expect = 4e-14
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 51/227 (22%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
             P +E+  L  +Y         G+ P++ D +L++  G+   L+G NGAGK+T+LK I 
Sbjct: 1   MMPMIEVENLTVSY---------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAIL 51

Query: 87  GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE---- 142
           G        +K+ G+                     R  + +    VP +  V       
Sbjct: 52  GLLKPSSGEIKIFGKPVR--------------KRRKRLRIGY----VPQKSSVDRSFPIT 93

Query: 143 ------------KMIFGVAGIDPQRRAELIKVLD-IDLS----WRMHKVSDGQRRRVQIC 185
                       K  F    ++ + + ++ + L+ + +      ++ ++S GQ++RV + 
Sbjct: 94  VKDVVLLGRYGKKGWFR--RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLA 151

Query: 186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
             L +   +LLLDE    +DV  + ++   L KE  + G T++  TH
Sbjct: 152 RALAQNPDLLLLDEPFTGVDVAGQKEIYDLL-KELRQEGKTVLMVTH 197

Length = 254

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 69.8 bits (172), Expect = 5e-14
 Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 27/214 (12%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  L  TY G            +   +L++  G+   +VG +G+GK+T+L I+GG  +
Sbjct: 1   IELKNLSKTYGGGGE-----KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG--L 53

Query: 91  VEPE--MVKVLGRSAFHDTALTSSGDLSYLGGEWRRE---VAFAGF----EVPIQMDVSA 141
             P    V+V G     D +  S  +L+      RR      F  F    ++    +V  
Sbjct: 54  DRPTSGEVRVDGT----DISKLSEKELAAF----RRRHIGFVFQSFNLLPDLTALENVEL 105

Query: 142 EKMIFGVAGIDPQRRA-ELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 198
             ++ GV   + + RA EL++ + +   L+    ++S GQ++RV I   L    K++L D
Sbjct: 106 PLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD 165

Query: 199 EITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           E T +LD     +++  LR+  +E G TI+  TH
Sbjct: 166 EPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 48/224 (21%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           + IN + F+YP            ++ + +L L  G++  L+G +G+GK+T+L+++     
Sbjct: 1   LSINNVSFSYP-------EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL----- 48

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG 150
                                +GDL    GE    +   G  V       +  +      
Sbjct: 49  ---------------------TGDLKPQQGE----ITLDGVPVSDLEKALSSLI-----S 78

Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 210
           +  QR       L  +L  R    S G+R+R+ +   LL+   ++LLDE TV LD +   
Sbjct: 79  VLNQRPYLFDTTLRNNLGRRF---SGGERQRLALARILLQDAPIVLLDEPTVGLDPITER 135

Query: 211 DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254
            LL  + +  +++  T+I+ TH   G+E+    I+++ +GK+ +
Sbjct: 136 QLLSLIFEVLKDK--TLIWITHHLTGIEHM-DKILFLENGKIIM 176

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 24/208 (11%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           ++  +LTL  G   LL G NGAGKTT+++I+    +  P      G        +     
Sbjct: 16  LDGVSLTLGPGMYGLL-GPNGAGKTTLMRILAT--LTPPSS----GTIRIDGQDVLKQPQ 68

Query: 115 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA---GI-DPQRRAELIKVLD-IDLSW 169
                 + RR + +   E  +  + +  + +  +A   GI   + +A + +VL+ ++L  
Sbjct: 69  ------KLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD 122

Query: 170 RMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 225
           R  K    +S G RRRV I   L+    +L++DE T  LD   R      L +  E+R  
Sbjct: 123 RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR-- 180

Query: 226 TIIYATHIFDGLENWPSHIVYVAHGKLQ 253
            +I +THI + +E+  + +  +  GKL 
Sbjct: 181 IVILSTHIVEDVESLCNQVAVLNKGKLV 208

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 33/205 (16%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
           P     + D +L++N G+   L+G +GAGK+T+L+ + G  +VEP      G      T 
Sbjct: 11  PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEP----TSGSVLIDGTD 64

Query: 109 LTSSGDLSYLGGE----WRREVA--FAGFEVPIQMDV------------SAEKMIFG-VA 149
           +        L G+     RR++   F  F +  ++ V            S  + +FG   
Sbjct: 65  INK------LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118

Query: 150 GIDPQRRAELIKVLDI-DLSW-RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL 207
             + QR    ++ + + D ++ R  ++S GQ++RV I   L++  K++L DE    LD  
Sbjct: 119 KEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPA 178

Query: 208 ARADLLRFLRKECEERGATIIYATH 232
           +   ++  L++   E G T+I + H
Sbjct: 179 SSRQVMDLLKRINREEGITVIVSLH 203

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 54/239 (22%), Positives = 95/239 (39%), Gaps = 40/239 (16%)

Query: 30  TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
            +E+  + FTYPG         T  + +F LTL  G++  ++G +G+GK+T+L+++ G  
Sbjct: 336 ALELRNVSFTYPG-------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388

Query: 90  MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 149
             +   + + G        L             R  ++     V +      + +     
Sbjct: 389 DPQQGSITLNGVEIAS---LDEQ--------ALRETISVLTQRVHLFSGTLRDNLRLANP 437

Query: 150 GIDPQRRAELIKVLD-IDLSWRM---------------HKVSDGQRRRVQICMGLLKPFK 193
                   EL   L  + L   +                ++S G+RRR+ +   LL    
Sbjct: 438 DASD---EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP 494

Query: 194 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           + LLDE T  LD +    +L  L +  E  G T++  TH   GLE     I+ + +GK+
Sbjct: 495 LWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDR-IIVLDNGKI 550

Length = 573

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 21/212 (9%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    +   +  +  G+   L+G NGAGKTT +K++         ++K     A      
Sbjct: 11  GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT-------LLKPTSGRAT----- 58

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKM-----IFGVAG-IDPQRRAELIKV 162
            +  D+     E RR +     ++ +  +++  E +     ++GV G    +R  EL+  
Sbjct: 59  VAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDF 118

Query: 163 LDI-DLSWRMHKV-SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 220
           + + + + R+ K  S G RRR++I   L+   +VL LDE T+ LD   RA +  ++ K  
Sbjct: 119 VGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178

Query: 221 EERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           EE G TI+  TH  +  E     +  + HG++
Sbjct: 179 EEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 34/218 (15%)

Query: 28  KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
           KPT+E+  L   YPG        + P+++  +L L  G+R  ++G +G+GK+T+L  + G
Sbjct: 332 KPTLELRDLSAGYPG--------APPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAG 383

Query: 88  KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG 147
             +++P   +V          L      S    E RR V+    +  +      E +   
Sbjct: 384 --LLDPLQGEVT---------LDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLA 432

Query: 148 VAGIDPQ---------RRAELIKVLDIDLSWRMH----KVSDGQRRRVQICMGLLKPFKV 194
                 +           A+ ++ L   L   +     ++S G+R+R+ +   LL    +
Sbjct: 433 RPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 492

Query: 195 LLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           LLLDE T  LD     +LL  L      R  T++  TH
Sbjct: 493 LLLDEPTEHLDAETADELLEDLLAALSGR--TVVLITH 528

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 40/222 (18%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G+   ++D  L +  G+  +L+G +G GKTT L++I G  + EP                
Sbjct: 11  GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG--LEEP---------------- 52

Query: 110 TSSGDLSYLGGE-------WRREVA--FAGFEVPIQMDVSAEKMIFGV-------AGIDP 153
            +SG + Y+GG          R++A  F  + +   M V  + + FG+         ID 
Sbjct: 53  -TSGRI-YIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV-YDNIAFGLKLRKVPKDEID- 108

Query: 154 QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 211
           +R  E+ ++L I+  L  +  ++S GQR+RV +   +++  KV L+DE   +LD   R  
Sbjct: 109 ERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ 168

Query: 212 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
           +   L++  +  G T IY TH           I  +  G++Q
Sbjct: 169 MRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 18/189 (9%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   L    + TLNAG+   + G NG GKTT+L+I+ G  ++ P+     G   ++ TA 
Sbjct: 11  GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG--LLRPDS----GEVRWNGTA- 63

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFGVAGIDPQRRAELIKVLDIDLS 168
                L+    E  R + + G    ++ ++SA E + F  A     +R     +  + L+
Sbjct: 64  -----LAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLT 118

Query: 169 WR----MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 224
                   ++S GQ+RR+ +    L    + +LDE T  LD    A L   LR     RG
Sbjct: 119 GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL-ARG 177

Query: 225 ATIIYATHI 233
             ++  TH 
Sbjct: 178 GIVLLTTHQ 186

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 67.2 bits (165), Expect = 8e-13
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 44/219 (20%)

Query: 28  KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
              +EI  +  ++         G   ++ D  L++  G+   ++G +G GK+T+L++I G
Sbjct: 1   MALLEIEGVSKSF---------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51

Query: 88  KHMVEPEMVKVLGRSAFHDTALTSSG-DLSYLGGE-----WRR---EVAFAGFEVPIQMD 138
             + +P   +VL         +T  G D+ Y+  E     W      VA     + ++  
Sbjct: 52  --LEKPTSGEVL----LDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALG---LELRGK 102

Query: 139 VSAEKMIFGVAGIDPQRRAELIKVLD-IDLSWRMHK----VSDGQRRRVQICMGLLKPFK 193
             AE             R    ++L+ + L+    K    +S G R+RV I   L    K
Sbjct: 103 SKAE------------ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPK 150

Query: 194 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           +LLLDE    LD L R +L   L +  EE   T++  TH
Sbjct: 151 LLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH 189

Length = 248

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 68.1 bits (167), Expect = 8e-13
 Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 48/224 (21%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
            KP +EI  +  ++         G    ++D +L +  G+   L+G +G GKTT+L++I 
Sbjct: 2   PKPALEIRNVSKSF---------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52

Query: 87  GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGE-------WRREVA--FAGFEVPIQM 137
           G    +P                 SSG++  L GE        +R +   F  + +   M
Sbjct: 53  G--FEQP-----------------SSGEI-LLDGEDITDVPPEKRPIGMVFQSYALFPHM 92

Query: 138 DVSAEKMIFGVAGIDPQRRAELIK--------VLDIDLSWRM-HKVSDGQRRRVQICMGL 188
            V  E + FG+      ++AE+          V     + R  H++S GQ++RV +   L
Sbjct: 93  TV-EENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARAL 151

Query: 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           +   KVLLLDE    LD   R  + + L++   E G T +Y TH
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH 195

Length = 352

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 66.3 bits (162), Expect = 9e-13
 Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 29/222 (13%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +N+ +LT+       L+G NGAGK+T+LK+I G  ++ P                 +SG+
Sbjct: 16  VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG--ILRP-----------------TSGE 56

Query: 115 LSYLGGEW-RREVAFAGF---EVPIQMDVSAE---KMIFGVAGIDPQRRAELIKVLDI-- 165
           + + G  W R+++   G      P+  +++A    K+   + G+   R  E++ ++D+  
Sbjct: 57  IIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN 116

Query: 166 DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 225
               +  + S G ++R+ I + LL   K+L+LDE T  LD +   + LR L +   E+G 
Sbjct: 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQE-LRELIRSFPEQGI 175

Query: 226 TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 267
           T+I ++HI   ++    HI  ++ G L     ++K +   KL
Sbjct: 176 TVILSSHILSEVQQLADHIGIISEGVLGYQGKINKSENLEKL 217

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 42/214 (19%)

Query: 58  FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSY 117
           F L +  G+   ++G +GAGK+T+L +I G   +EP      G    +D + T       
Sbjct: 17  FDLNVADGEIVAIMGPSGAGKSTLLNLIAG--FIEP----ASGSIKVNDQSHTGL----- 65

Query: 118 LGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VA-----GIDPQRR---AELIKVLDI- 165
                      A ++ P+ M +  E  +F    V      G+ P  +    +  KV+D  
Sbjct: 66  -----------APYQRPVSM-LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113

Query: 166 ------DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 218
                 D   R+  ++S GQR+RV +   L++P  +LLLDE    LD L R ++L  +++
Sbjct: 114 QQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ 173

Query: 219 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
            C ER  T++  TH         S I  V+ GK+
Sbjct: 174 LCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 14/225 (6%)

Query: 57  DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLS 116
           D   TL       + G +G+GKTT++++I G  +  P+     G    +   L  S    
Sbjct: 15  DADFTLPGQGVTAIFGRSGSGKTTLIRLIAG--LTRPDE----GEIVLNGRTLFDSRKGI 68

Query: 117 YLGGEWRREVAFAGFEVPIQMDVS-AEKMIFGVAGIDPQRR----AELIKVLDID--LSW 169
           +L  E +R + +   E  +   +S    + +G+    P  R      +I++L I   L  
Sbjct: 69  FLPPE-KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR 127

Query: 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 229
              ++S G+++RV I   LL   ++LL+DE    LD   + ++L +L +   E G  I+Y
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187

Query: 230 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVE 274
            +H    +      +V +  G++  A P+ +V  +  L  +   +
Sbjct: 188 VSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLARED 232

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 54/243 (22%)

Query: 32  EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV 91
           E+  L  +Y         G  P++ D +  +  G+   +VG NGAGK+T+LK I G  ++
Sbjct: 1   EVEDLTVSY---------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG--LL 49

Query: 92  EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE--------- 142
           +P                 +SG +   G    +E    G+ VP +  +  +         
Sbjct: 50  KP-----------------TSGSIRVFGKPLEKERKRIGY-VPQRRSIDRDFPISVRDVV 91

Query: 143 -----KMIFGVAGIDPQRRAELIKVLDI----DLSWR-MHKVSDGQRRRVQICMGLLKPF 192
                        +    +A++ + L+     +L+ R + ++S GQ++RV +   L++  
Sbjct: 92  LMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151

Query: 193 KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY-----V 247
            +LLLDE    +D   + D+   LR+   E G TI+  TH    +  +   ++      V
Sbjct: 152 DLLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRTVV 210

Query: 248 AHG 250
           A G
Sbjct: 211 ASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 27/197 (13%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   +++D  LT+  G    ++G +G+GK+T+L IIG     +   V + G+       L
Sbjct: 9   GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQET---PPL 65

Query: 110 TSS-------GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI--FGVAGIDPQRRAELI 160
            S          L YL         F  F +     V     +          ++R +  
Sbjct: 66  NSKKASKFRREKLGYL---------FQNFALIENETVEENLDLGLKYKKLSKKEKREKKK 116

Query: 161 KVL-----DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 215
           + L     ++ L  +++++S G+++RV +   +LKP  ++L DE T  LD   R ++L  
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176

Query: 216 LRKECEERGATIIYATH 232
           L +  +E G TII  TH
Sbjct: 177 LLELNDE-GKTIIIVTH 192

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 33/242 (13%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           ++N    +++  + F+YP             + + +  +N G+   ++G NG+GK+TI K
Sbjct: 1   IKNKSVMIKVENVSFSYP-------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISK 53

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV--SA 141
           I+ G       ++K        D    S  +L  +    R+++    F+ P    +  + 
Sbjct: 54  ILTG-------LLKPQSGEIKIDGITISKENLKEI----RKKIGII-FQNPDNQFIGATV 101

Query: 142 EKMI-FGVAG--IDPQRRAELI----KVLDID--LSWRMHKVSDGQRRRVQICMGL-LKP 191
           E  I FG+    + P++  ++I    K + ++  L      +S GQ++RV I   L L P
Sbjct: 102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161

Query: 192 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
            ++++ DE T  LD   + ++ + +    + R  T+I  TH  D        IV+ + GK
Sbjct: 162 -EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVF-SEGK 219

Query: 252 LQ 253
           L 
Sbjct: 220 LI 221

Length = 271

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 51/230 (22%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
            K  +E   +   Y G           L+ D +  ++ GDR  +VG NGAGK+T+LK++ 
Sbjct: 318 GKLVLEFENVSKGYDG--------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369

Query: 87  GKHMVEPE--MVKVLGRSA----FHDTALTSSGDLSYLGGEWRREVAFAGFEVPI----- 135
           G+  + P    VKV G +     F         D + L  E   E    G E  +     
Sbjct: 370 GE--LGPLSGTVKV-GETVKIGYFDQHRDELDPDKTVL--EELSEGFPDGDEQEVRAYLG 424

Query: 136 QMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVL 195
           +   + E               + + VL           S G++ R+ +   LL+P  +L
Sbjct: 425 RFGFTGEDQ------------EKPVGVL-----------SGGEKARLLLAKLLLQPPNLL 461

Query: 196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 245
           LLDE T  LD+    + L  L +   +   T++  +H    L+   + I 
Sbjct: 462 LLDEPTNHLDI----ESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIW 507

Length = 530

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 64.6 bits (158), Expect = 3e-12
 Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 22/214 (10%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
           PG    ++D +L +  G+   L G +GAGKTT+LK++ G        V++ G     D  
Sbjct: 12  PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG----EDVN 67

Query: 109 LTSSGDLSYLGGEWRRE--VAFAGFEVPIQMDVSAEKMIFG--VAGIDP---QRRAELIK 161
                 L  L    RR   V F  F +     V  E +     V G      QRR     
Sbjct: 68  RLRGRQLPLL----RRRIGVVFQDFRLLPDRTV-YENVALPLEVRGKKEREIQRRVGAAL 122

Query: 162 VLDIDLSWRMH----KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 217
              + L  +      ++S G+++RV I   ++    +LL DE T +LD      +L  L+
Sbjct: 123 RQ-VGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLK 181

Query: 218 KECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
           +   +RG T+I ATH    ++     ++ +  G+
Sbjct: 182 RLN-KRGTTVIVATHDLSLVDRVAHRVIILDDGR 214

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 21/194 (10%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G+   ++D +L + +G+   L+G +GAGK+T+L+II G  +  P+     GR   +   L
Sbjct: 13  GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG--LETPD----AGRIRLNGRVL 66

Query: 110 TSSGDLSYLGGEWRR-EVAFAGFEVPIQMDVSAEKMIFG-----VAGIDPQRRAELIKVL 163
               D+S L    R+    F  + +   M V A+ + FG         + + RA + ++L
Sbjct: 67  F---DVSNLAVRDRKVGFVFQHYALFPHMTV-ADNIAFGLKVRKERPSEAEIRARVEELL 122

Query: 164 DI----DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 218
            +     L+ R   ++S GQR+RV +   L    KVLLLDE    LD   R +L R+LRK
Sbjct: 123 RLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182

Query: 219 ECEERGATIIYATH 232
             +  G T ++ TH
Sbjct: 183 LHDRLGVTTVFVTH 196

Length = 345

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 25/103 (24%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  L  TY         G   L+ D +LT+N GDR  LVG NGAGK+T+LK+I G+  
Sbjct: 1   IELENLSKTY---------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE-- 49

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYL----GGEWRREVAFA 129
               +    G   +  T       + Y     GGE  R +A A
Sbjct: 50  ----LEPDEGIVTWGSTV-----KIGYFEQLSGGEKMR-LALA 82

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 47/243 (19%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
           PG T L++  +LT  AG    L+G NG+GK+T+LK++G +H    E     G        
Sbjct: 22  PGRT-LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLG-RHQPPSE-----GEILLDAQP 74

Query: 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI------------------FGVAG 150
           L S    ++      R+VA+   ++P     +AE M                   FG A 
Sbjct: 75  LESWSSKAF-----ARKVAYLPQQLP-----AAEGMTVRELVAIGRYPWHGALGRFGAA- 123

Query: 151 IDPQRRAELIKVLDID-LSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 208
            D ++  E I ++ +  L+ R+   +S G+R+R  I M + +  + LLLDE T  LD+  
Sbjct: 124 -DREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182

Query: 209 RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 268
           + D+L  + +  +ERG T+I   H  +    +  ++V +  G++        + + +   
Sbjct: 183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM--------IAQGTPAE 234

Query: 269 LMR 271
           LMR
Sbjct: 235 LMR 237

Length = 265

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 28/201 (13%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL--GRSAFHD 106
           PG   ++         G+   L+G+NGAGK+T+L  + G  ++ P+   VL  G    + 
Sbjct: 2   PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNG--LLRPQSGAVLIDGEPLDYS 59

Query: 107 -TALTSSGDLSYLGGEWRREVAFAGFEVP--------IQMDVSAEKMIFGVAGIDPQRRA 157
              L           E R+ V    F+ P        +  DV+   +  G++  + +RR 
Sbjct: 60  RKGLL----------ERRQRVGLV-FQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRV 108

Query: 158 -ELIKVLDID-LSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 214
            E +  +    L  R  H +S G+++RV I   +     VLLLDE T  LD   R  +L 
Sbjct: 109 REALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168

Query: 215 FLRKECEERGATIIYATHIFD 235
            LR+   E G T++ +TH  D
Sbjct: 169 ILRRLRAE-GMTVVISTHDVD 188

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 66.7 bits (163), Expect = 5e-12
 Identities = 51/257 (19%), Positives = 103/257 (40%), Gaps = 43/257 (16%)

Query: 13  TEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVG 72
            E E E     ++++  ++E   + F+YPG          P++ D + ++  G++  +VG
Sbjct: 311 EEPEVEDPPDPLKDTIGSIEFENVSFSYPG--------KKPVLKDISFSIEPGEKVAIVG 362

Query: 73  SNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFE 132
            +G+GK+T++K++   +  +P      G        +             R+ +     +
Sbjct: 363 PSGSGKSTLIKLLLRLY--DPT----SGEILIDGIDIR-----DISLDSLRKRIGIVSQD 411

Query: 133 VPIQMDVS-AEKMIFGVAGIDPQRRAELIKVL----------------DIDLSWRMHKVS 175
             +    +  E +  G          E+ + L                D  +  R   +S
Sbjct: 412 PLL-FSGTIRENIALGRPDAT---DEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLS 467

Query: 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 235
            GQR+R+ I   LL+   +L+LDE T  LD    A +   L+K  + R  T +   H   
Sbjct: 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGR--TTLIIAHRLS 525

Query: 236 GLENWPSHIVYVAHGKL 252
            ++N    I+ + +G++
Sbjct: 526 TIKNA-DRIIVLDNGRI 541

Length = 567

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 63.9 bits (156), Expect = 7e-12
 Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 25/211 (11%)

Query: 57  DFTLTLN---AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
           DFTL ++     +   + G++GAGK+T+L+ I G  + +P+     G    + T L  S 
Sbjct: 12  DFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAG--LEKPDG----GTIVLNGTVLFDSR 65

Query: 114 DLSYLGGEWRREVAF-----AGFEVPIQMDVSAEKMIFGVAGIDP----QRRAELIKVLD 164
               L  + +R++       A F     ++V  E + FG+             EL+ +L 
Sbjct: 66  KKINLPPQ-QRKIGLVFQQYALFP---HLNV-RENLAFGLKRKRNREDRISVDELLDLLG 120

Query: 165 ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 222
           +D  L+    ++S G+++RV +   L    ++LLLDE    LD   R  LL  L++  + 
Sbjct: 121 LDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN 180

Query: 223 RGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
               +I+ TH     E     IV +  G+LQ
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 55/233 (23%), Positives = 105/233 (45%), Gaps = 40/233 (17%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           ++ N L  TY         G   +++D +L +  G+    +G NGAGKTT +KII G  +
Sbjct: 1   LKTNDLTKTY---------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG--L 49

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG-----FEVPI-QMDVSAEKM 144
           ++P                  SG++++ G  +++ +          E P    +++A + 
Sbjct: 50  IKP-----------------DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAREN 92

Query: 145 IFGVAGIDPQRRAELIKVLDI-DLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDE 199
           +  +A +   R+  + +VLD+  L     K     S G ++R+ I + LL    +L+LDE
Sbjct: 93  LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152

Query: 200 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
            T  LD     +L   +    ++ G T++ ++H+   ++     I  +  GKL
Sbjct: 153 PTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKL 204

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 19/210 (9%)

Query: 57  DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLS 116
           D  LT+  G     +G  G+GK+TI++++ G H+     V+V        T+ + + D+ 
Sbjct: 25  DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI---TSTSKNKDIK 81

Query: 117 YLGGEWRREVA----FAG---FEVPIQMDVSAEKMIFGVAGIDPQRRA-ELIKVLDIDLS 168
            +    R++V     F     FE  +  DV+     FGV+  + +  A E + ++ I  S
Sbjct: 82  QI----RKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES 137

Query: 169 WRMH---KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 225
                  ++S GQ RRV I   L    K+L+LDE T  LD   R +L+  L K+  + G 
Sbjct: 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT-LFKKLHQSGM 196

Query: 226 TIIYATHIFDGLENWPSHIVYVAHGKLQLA 255
           TI+  TH+ D + N+   +  +  GKL L+
Sbjct: 197 TIVLVTHLMDDVANYADFVYVLEKGKLVLS 226

Length = 280

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 31/188 (16%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           VE   + F YPG DG       P++ D +L + AG+   LVG +G+GK+T++ +I   + 
Sbjct: 1   VEFKNVTFRYPG-DG------PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD 53

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG 150
           V+   + + G    HD    +   L       RR++     +V +  D  AE + +G  G
Sbjct: 54  VDSGRILIDG----HDVRDYTLASL-------RRQIGLVSQDVFLFNDTVAENIAYGRPG 102

Query: 151 IDPQ--RRA-------ELIKVL----DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLL 197
              +    A       E I  L    D  +  R  K+S GQR+R+ I   LLK   +L+L
Sbjct: 103 ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILIL 162

Query: 198 DEITVDLD 205
           DE T  LD
Sbjct: 163 DEATSALD 170

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 43/242 (17%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII----- 85
           +E+  +  T+         G+   ++D +L +  G+   ++G +GAGK+T+L++I     
Sbjct: 2   IELENVSKTFGQTGT----GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER 57

Query: 86  --GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA--FAGFEVPIQMDVSA 141
              G   V+ + +  L  +                  + R+++   F  F +     V  
Sbjct: 58  PTSGSVFVDGQDLTALSEAELR---------------QLRQKIGMIFQHFNLLSSRTV-F 101

Query: 142 EKMIFG--VAGIDP----QRRAELIKVLDIDLSWRMHK----VSDGQRRRVQICMGL-LK 190
           E + F   +AG+      QR AEL++++   LS +  +    +S GQ++RV I   L   
Sbjct: 102 ENVAFPLELAGVPKAEIKQRVAELLELVG--LSDKADRYPAQLSGGQKQRVAIARALANN 159

Query: 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250
           P K+LL DE T  LD      +L  L+    E G TI+  TH  + ++     +  +  G
Sbjct: 160 P-KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQG 218

Query: 251 KL 252
           +L
Sbjct: 219 RL 220

Length = 339

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 54/214 (25%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
            +P +E+  LK  +P   G         ++  + ++  G+   LVG +G GK+T+ ++I 
Sbjct: 1   MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60

Query: 87  GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF 146
           G  + EP                 +SG++ + G +  +                      
Sbjct: 61  G--LEEP-----------------TSGEILFEGKDITK---------------------- 79

Query: 147 GVAGIDPQRRAELIKVLDIDLS------WRM-HKVSDGQRRRVQICMGL-LKPFKVLLLD 198
               +  + R E +  L   +       +R  H++S GQR+R+ I   L L P K+++ D
Sbjct: 80  ----LSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNP-KLIVAD 134

Query: 199 EITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           E    LDV  +A +L  L+   EE G T ++ +H
Sbjct: 135 EPVSALDVSVQAQILNLLKDLQEELGLTYLFISH 168

Length = 268

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 24/181 (13%)

Query: 60  LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLG 119
            TL AG+   + G NG+GKTT+L+I+ G  +  P   +V          L + G L +  
Sbjct: 21  FTLAAGEALQVTGPNGSGKTTLLRILAG--LSPPLAGRV----------LLNGGPLDFQR 68

Query: 120 GEWRREVAFAGFEVPIQMDVSA-EKMIF-----GVAGI-DPQRRAELIKVLDIDLSWRMH 172
               R + + G    I+  +S  E + F         + +   R  L    D  +     
Sbjct: 69  DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPV----A 124

Query: 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           ++S GQ+RRV +   LL    + +LDE T  LD    A     +   C  RG  ++  TH
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC-ARGGMVVLTTH 183

Query: 233 I 233
            
Sbjct: 184 Q 184

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 16/191 (8%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
           P++ + +LT+NAG+   L G +GAGK+T+LK +   ++ +   + V    A+ D A  S 
Sbjct: 22  PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81

Query: 113 GDLSYLGGEWRREVAFAG-F-----EVPIQMDVSAEKMI-FGVAGIDPQRRA-ELIKVLD 164
            ++  +    R+ + +   F      V   ++V AE ++  GV     + RA EL+  L+
Sbjct: 82  REVLEVR---RKTIGYVSQFLRVIPRVS-ALEVVAEPLLERGVPREAARARARELLARLN 137

Query: 165 IDLS-WRMH--KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 221
           I    W +     S G+++RV I  G +  + +LLLDE T  LD   R  ++  +  E +
Sbjct: 138 IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA-EAK 196

Query: 222 ERGATIIYATH 232
            RGA +I   H
Sbjct: 197 ARGAALIGIFH 207

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 44/245 (17%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E   +   Y         G+   ++D  LT+  G+  +L+G +G+GKTT LK+I    +
Sbjct: 2   IEFENVSKRY---------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR--L 50

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ-------MDVSAEK 143
           +EP   ++L      D    S  D   L    RR++ +      IQ       + V AE 
Sbjct: 51  IEPTSGEIL-----IDGEDISDLDPVEL----RRKIGYV-----IQQIGLFPHLTV-AEN 95

Query: 144 MIF--GVAGIDPQRRA----ELIKVLDIDLSWRMHK----VSDGQRRRVQICMGLLKPFK 193
           +     + G D +R      EL+ ++ +D S    +    +S GQ++RV +   L     
Sbjct: 96  IATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPP 155

Query: 194 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL- 252
           +LL+DE    LD + R  L   +++  +E G TI++ TH  D        I  +  G++ 
Sbjct: 156 ILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIV 215

Query: 253 QLAMP 257
           Q   P
Sbjct: 216 QYDTP 220

Length = 309

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.5 bits (152), Expect = 3e-11
 Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 50/230 (21%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPL-INDFTLTLNAGDRCLLVGSNGAGKTTIL 82
           ME+    +    + F Y               + D +  +  G    +VG NG+GK+TI 
Sbjct: 1   MEDKNSIIVFKNVSFQYQS--------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIA 52

Query: 83  KIIGGKHMVEPEMVKVLGRSAFHDTALTSSG---------------DLSYLGGEWRREVA 127
           K++ G  + + +     G   +++ A+T                  D  ++G   + +VA
Sbjct: 53  KLMIG--IEKVKS----GEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA 106

Query: 128 FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVL-DIDLSWRM----HKVSDGQRRRV 182
           F G E      V  ++M   V+           + L  +D+  R     + +S GQ++RV
Sbjct: 107 F-GLE---NHAVPYDEMHRRVS-----------EALKQVDMLERADYEPNALSGGQKQRV 151

Query: 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
            I   L     V++LDE T  LD  AR +LL  +RK   E   TII  TH
Sbjct: 152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201

Length = 269

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 61.7 bits (151), Expect = 4e-11
 Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 38/215 (17%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  +  TY G       G+   + D +L++  G+   LVG +G GK+T+L+II G  +
Sbjct: 1   LEVRNVSKTYGG-----GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG--L 53

Query: 91  VEPEMVKVLGRSAFHDTALTSSG-DLSYLGGE-----WR--RE-VAFAGFEVPIQMDVSA 141
             P      G        +T  G D  Y+  +     W    + VA  G E+        
Sbjct: 54  ERPTS----GEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL-GLELQ------- 101

Query: 142 EKMIFGVAGIDPQRRA-ELIKVLDID--LSWRMHKVSDGQRRRVQICMGL-LKPFKVLLL 197
                GV   + + RA EL++++ +    +   H++S G R+RV +   L + P  VLLL
Sbjct: 102 -----GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP-DVLLL 155

Query: 198 DEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           DE    LD L R  L   L     E G T++  TH
Sbjct: 156 DEPFSALDALTREQLQEELLDIWRETGKTVLLVTH 190

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 27/223 (12%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL--GRSAFHD 106
            G    +N+  L +  G+  +L+G +G+GKTT +K+I    ++EP   ++   G      
Sbjct: 11  GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI--NRLIEPTSGEIFIDGED---- 64

Query: 107 TALTSSGDLSYLGGEWRREVAFAGFEV------PIQMDVSAEKMIFGVAGIDPQRRA-EL 159
                  D   L    RR++ +   ++       ++ +++    +        + RA EL
Sbjct: 65  ---IREQDPVEL----RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADEL 117

Query: 160 IKVLDIDLSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 215
           + ++ +D +       H++S GQ++RV +   L     +LL+DE    LD + R  L   
Sbjct: 118 LALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEE 177

Query: 216 LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMP 257
            ++  +E G TI++ TH  D        I  + +G++ Q+  P
Sbjct: 178 FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTP 220

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 60/220 (27%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK------------IIGGK--------- 88
           G    ++  +  L  G+   +VG +G+GK+ + K            I+GG+         
Sbjct: 16  GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL 75

Query: 89  HMVEPEMVKVLGRSA---FHD--TALTSS---GD-----LSYLGGEWRREVAFAGFEVPI 135
            + E E+ K+ G+     F D  T+L      GD     L   G    ++ A        
Sbjct: 76  SLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE------ 129

Query: 136 QMDVSAEKMIFGVAGI-DPQRRAELIKVLDIDLSWRM--HKVSDGQRRRVQICMGLLKPF 192
                A +++  V GI DP+RR             +   H++S G R+RV I M L    
Sbjct: 130 ----RAIELLELV-GIPDPERR------------LKSYPHELSGGMRQRVMIAMALALNP 172

Query: 193 KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           K+L+ DE T  LDV  +A +L  L++   E+G  +I  TH
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212

Length = 316

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 61.1 bits (149), Expect = 5e-11
 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 33/216 (15%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
              T +++D +L L AG+   L G NGAGKTT+ KI+ G  +++     +L         
Sbjct: 10  KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG--LIKESSGSIL--------- 58

Query: 109 LTSSGDLSYLGGEW------RREVAFAGFEVPIQ--MDVSAEKMIFGV--AGIDPQRRAE 158
                    L G+       R+ + +   +V  Q   D   E+++ G+       ++   
Sbjct: 59  ---------LNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAET 109

Query: 159 LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
           ++K LD+          +S GQ++R+ I   LL    +L+ DE T  LD     + +  L
Sbjct: 110 VLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD-YKNMERVGEL 168

Query: 217 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
            +E   +G  +I  TH ++ L      ++ +A+G +
Sbjct: 169 IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 42/221 (19%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G  P+   F LT   G+   +VG +G+GK+T+L +I G     P+  +VL        A 
Sbjct: 11  GEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAG--FETPQSGRVLINGVDVTAAP 66

Query: 110 TSSGDLSYLGGEWRREVAFAGFEV---------------PIQ---MDVSAEKMIFGVAGI 151
            +   +S L   ++    FA   V                     ++V+  ++  G+AG+
Sbjct: 67  PADRPVSML---FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARV--GLAGL 121

Query: 152 DPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 211
           + +   EL               S G+R+RV +   L++   VLLLDE    LD   RA+
Sbjct: 122 EKRLPGEL---------------SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166

Query: 212 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           +L  +     E   T++  TH  +  +     +V++ +G++
Sbjct: 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 56/222 (25%), Positives = 87/222 (39%), Gaps = 41/222 (18%)

Query: 33  INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE 92
            NA K  + G      P     +N  +L +  GD   ++GSNGAGK+T+L  I G     
Sbjct: 5   SNATKTFFKGT-----PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT 59

Query: 93  PEMVKVLGR---------------SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM 137
              + + G                  F D    ++ +L+               E     
Sbjct: 60  SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTI-------------EENLALA 106

Query: 138 DVSAEKMIFGVAGIDPQRRA---ELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLK 190
           +   +K     A ++ +RR+   E +  L +     LS R+  +S GQR+ + + M  L 
Sbjct: 107 ESRGKKRGLSSA-LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH 165

Query: 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           P K+LLLDE T  LD      ++    K  EE   T +  TH
Sbjct: 166 PPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207

Length = 263

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 53/186 (28%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    ++  +L++  G+   L+G NGAGK+T++KI+ G  + +P+               
Sbjct: 11  GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG--LYKPD--------------- 53

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSW 169
             SG++  + G   +EV+FA    P      A +     AGI       ++         
Sbjct: 54  --SGEI-LVDG---KEVSFAS---PRD----ARR-----AGI------AMV--------- 80

Query: 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 229
             +++S G+R+ V+I   L +  ++L+LDE T  L       L + +R+    +G  +I+
Sbjct: 81  --YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR-AQGVAVIF 137

Query: 230 ATHIFD 235
            +H  D
Sbjct: 138 ISHRLD 143

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 27/234 (11%)

Query: 30  TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
           ++++N +   Y         G+   + D TL    G+  +L+G +GAGK+++L+++    
Sbjct: 2   SIQLNGINCFY---------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE 52

Query: 90  MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA--FAGFEVPIQMDV-----SAE 142
           M     + + G         +          + RR V   F  + +   + V      A 
Sbjct: 53  MPRSGTLNIAGNHFDFSKTPSDKA-----IRDLRRNVGMVFQQYNLWPHLTVQENLIEAP 107

Query: 143 KMIFGVAGIDPQRRA-ELIKVL---DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 198
             + G++      RA +L+K L        + +H +S GQ++RV I   L+   +VLL D
Sbjct: 108 CRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH-LSGGQQQRVAIARALMMEPQVLLFD 166

Query: 199 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           E T  LD    A ++  + KE  E G T +  TH  +      S +VY+ +G +
Sbjct: 167 EPTAALDPEITAQIVSII-KELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219

Length = 242

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 27/222 (12%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   +++   +T   G    L+G NG+GK+T+L+++ G   + P+            T  
Sbjct: 12  GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG--ALRPD----------AGTVD 59

Query: 110 TSSGDLSYLGGEWR-REVAFAGFEVPIQMDVSAEKMIF-------GVAGIDPQRRAE--- 158
            +  DL  L    R R VA    +    + ++   ++         +   D    A    
Sbjct: 60  LAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVD 119

Query: 159 --LIKVLDIDLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 215
             L +     L+ R M  +S G+R+RV +   L +  K+LLLDE T  LDV A+ + L  
Sbjct: 120 RALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179

Query: 216 LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257
           +R+     G T++ A H  +   ++  H+V +  G++  A P
Sbjct: 180 VRELAAT-GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 33/219 (15%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           M+ + P +++  + +           G   ++N+ + +L AG+  L+ G +G GK+T+LK
Sbjct: 1   MQENSPLLQLQNVGYL---------AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLK 51

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGE-WRREVAFAGFEVPIQM-DVSA 141
           I+    ++ P    +L    F         D+S L  E +R++V++   + P    D   
Sbjct: 52  IVAS--LISPTSGTLL----FEGE------DISTLKPEIYRQQVSYC-AQTPTLFGDTVY 98

Query: 142 EKMIF--GVAGIDPQRRAELIKVL------DIDLSWRMHKVSDGQRRRVQICMGLLKPFK 193
           + +IF   +    P      +  L      D  L+  + ++S G+++R+ +   L    K
Sbjct: 99  DNLIFPWQIRNQQPDPAI-FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157

Query: 194 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           VLLLDEIT  LD   + ++   + +   E+   +++ TH
Sbjct: 158 VLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTH 196

Length = 225

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 51/216 (23%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           + D +  +  G+R  L+G NGAGK+T+L+++ G   + P                  SG 
Sbjct: 38  LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG---IYP----------------PDSGT 78

Query: 115 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD---------- 164
           ++  G    R  +  G       +++  + I+    +    R E+ + +D          
Sbjct: 79  VTVRG----RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD 134

Query: 165 -IDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 223
            IDL   +   S G + R+   +       +LL+DE      VLA  D   F  K C+ R
Sbjct: 135 FIDL--PVKTYSSGMKARLAFAIATALEPDILLIDE------VLAVGD-AAFQEK-CQRR 184

Query: 224 -------GATIIYATHIFDGLENWPSHIVYVAHGKL 252
                  G T+I  +H    ++      + +  GK+
Sbjct: 185 LRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 20/191 (10%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   ++N+ +L++ AG+   + G +G GK+T+LKI+    ++ P    +L          
Sbjct: 14  GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA--SLISPTSGTLLFEGE------ 65

Query: 110 TSSGDLSYLGGE-WRREVAFAGFEVPIQMDVSAEKMIFG----VAGIDPQRRAELIKVLD 164
               D+S L  E +R++V++      +  D   + +IF         D     +L+    
Sbjct: 66  ----DVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFA 121

Query: 165 ID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 221
           +    L+  + ++S G+++R+ +   L    K+LLLDEIT  LD   + ++   + +   
Sbjct: 122 LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR 181

Query: 222 ERGATIIYATH 232
           E+   +++ TH
Sbjct: 182 EQNVAVLWITH 192

Length = 223

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 19/190 (10%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   L +D + TLNAG+   + G NGAGKTT+L+I+ G  ++ P+     G   +    +
Sbjct: 13  GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG--LLRPDA----GEVYWQGEPI 66

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFGVAGIDPQRRAELIKVLDI-DL 167
            +  +       + + + + G +  I+ +++A E + F          A + + L    L
Sbjct: 67  QNVRE------SYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGL 120

Query: 168 SWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 223
           +         +S GQ+RRV +    L P  + +LDE    LD    A L   +      +
Sbjct: 121 AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA-AQ 179

Query: 224 GATIIYATHI 233
           G  ++  TH 
Sbjct: 180 GGIVLLTTHQ 189

Length = 209

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 50/213 (23%), Positives = 90/213 (42%), Gaps = 24/213 (11%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    ++     +  G+    +G NGAGKTT ++++    ++ P       R A +D  +
Sbjct: 4   GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT--LLRPTSGT--ARVAGYD--V 57

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE---KMIFGVAGID----PQRRAELIKV 162
                      + RR +        +  D++     +M+  + G+      +R  EL+++
Sbjct: 58  VREPR------KVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLEL 111

Query: 163 LDIDLSWRMHKV---SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 219
            ++  +     V   S G RRR+ I   L+    VL LDE T  LD   R  +  ++R  
Sbjct: 112 FELGEA-ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170

Query: 220 CEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
            EE G TI+  TH  +  +     I  + HG++
Sbjct: 171 KEE-GVTILLTTHYMEEADKLCDRIAIIDHGRI 202

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 29/200 (14%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA------ 103
           GS   +N+         R  ++G NGAGK+T+ +   G  +++P    VL R        
Sbjct: 15  GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG--ILKPTSGSVLIRGEPITKEN 72

Query: 104 ------FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRA 157
                 F      +  D         +++AF     PI + +  E +          R +
Sbjct: 73  IREVRKFVGLVFQNPDD-QIFSPTVEQDIAFG----PINLGLDEETV--------AHRVS 119

Query: 158 ELIKVLDI-DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 215
             + +L + +L  R+ H +S G+++RV I   +    +VL+LDE T  LD     +L+ F
Sbjct: 120 SALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179

Query: 216 LRKECEERGATIIYATHIFD 235
           L    E  G T+I++TH  D
Sbjct: 180 LNDLPETYGMTVIFSTHQLD 199

Length = 277

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 60/236 (25%), Positives = 99/236 (41%), Gaps = 40/236 (16%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  L F Y   DG      T  +   +L++  G +  L+G NGAGK+T+L  + G ++
Sbjct: 5   IEVEDLHFRYK--DG------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL 56

Query: 91  VEPEMVKVLGRSAFHDT----------ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS 140
            +   VKV+GR    +                 D  +    W  +VAF     P+ M + 
Sbjct: 57  PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW-DDVAFG----PVNMGLD 111

Query: 141 AEKMIFGVAGIDPQRRAELIKVLDIDLSWRM-----HKVSDGQRRRVQICMGLLKPFKVL 195
            +++         +RR E  + L     W       + +S GQ++RV I   L     V+
Sbjct: 112 KDEV---------ERRVE--EALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160

Query: 196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
           +LDE    LD   +  L+  L      +G T+I ATH  D    W   ++ +  G+
Sbjct: 161 VLDEPMAYLDPRGQETLMEIL-DRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGR 215

Length = 274

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 60.7 bits (148), Expect = 4e-10
 Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 37/217 (17%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E   + F YPG         TP +++ +LT+  G++  ++G  G+GK+T+LK++ G  +
Sbjct: 464 IEFRNVSFAYPG-------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG--L 514

Query: 91  VEPEMVKVL--GRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV 148
            +P    VL  G     D       DL       RR + +   +  +      + +  G 
Sbjct: 515 YQPTEGSVLLDG----VDIRQIDPADL-------RRNIGYVPQDPRLFYGTLRDNIALGA 563

Query: 149 AGIDPQ---RRAELIKV----------LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVL 195
              D +   R AEL  V          LD+ +  R   +S GQR+ V +   LL+   +L
Sbjct: 564 PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPIL 623

Query: 196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           LLDE T  +D  +       L++    +  T++  TH
Sbjct: 624 LLDEPTSAMDNRSEERFKDRLKRWLAGK--TLVLVTH 658

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 38/202 (18%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG-KHMVEPEMVKVLGRSAFHDTA 108
           G T ++ND +L + +G    L+G +G+GKTT+L+II G +H          G   FH T 
Sbjct: 13  GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS-------GHIRFHGT- 64

Query: 109 LTSSGDLSYLGGEWRREVAF-----AGFEVPIQMDVSAEKMIFGVAGIDPQR-------- 155
                D+S L    R+ V F     A F     M V  + + FG+  + P+R        
Sbjct: 65  -----DVSRLHARDRK-VGFVFQHYALFR---HMTVF-DNIAFGLT-VLPRRERPNAAAI 113

Query: 156 RAELIKVLDI----DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 210
           +A++ ++L++     L+ R   ++S GQ++RV +   L    ++LLLDE    LD   R 
Sbjct: 114 KAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173

Query: 211 DLLRFLRKECEERGATIIYATH 232
           +L R+LR+  EE   T ++ TH
Sbjct: 174 ELRRWLRQLHEELKFTSVFVTH 195

Length = 353

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 33/219 (15%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG--- 87
           VE   + FTYP           P +ND + ++  G    L+G NG+GK+TI K+I G   
Sbjct: 6   VEFKHVSFTYPD-------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL 58

Query: 88  KHMVEPEMVKVLGRSAFHDTA---------LTSSGDLSYLGGEWRREVAFAGFEVPIQMD 138
                   + V G +    T          +  + D  ++G     +VAF G E      
Sbjct: 59  PDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF-GLE---NRA 114

Query: 139 VSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL--KPFKVLL 196
           V   +MI  V  +        + +LD   S     +S GQ++RV I  G+L  +P K+++
Sbjct: 115 VPRPEMIKIVRDVLAD-----VGMLDYIDS-EPANLSGGQKQRVAIA-GILAVEP-KIII 166

Query: 197 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 235
           LDE T  LD   +  +L+ +RK  ++   T+I  TH  D
Sbjct: 167 LDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205

Length = 282

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 33/200 (16%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           + D  L +N G+  +L G +G+GKTT+L +IGG   V+   +KVLG+  +  +       
Sbjct: 21  LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL--- 77

Query: 115 LSYLGGEWRREVAFA-------GF---EVPIQMDVSAEKMIFGVAGIDPQ-RRAELIKVL 163
                 + RR + +        GF      +QM  + E        +  Q  R     +L
Sbjct: 78  -----VQLRRNIGYIFQAHNLLGFLTARQNVQM--ALELQ----PNLSYQEARERARAML 126

Query: 164 D-IDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 218
           + + L   +      +S GQ++RV I   L+   K++L DE T  LD  +  D++  ++K
Sbjct: 127 EAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQK 186

Query: 219 ECEERGATIIYATH---IFD 235
              E+G TI+  TH   I D
Sbjct: 187 LAREQGCTILIVTHDNRILD 206

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 45/258 (17%)

Query: 13  TEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVG 72
           +E   ++K   + N    + IN + ++Y    G+     + +++D +LT+    +  +VG
Sbjct: 456 SEFINKKKRTELNNLNGDIVINDVSYSY----GY----GSNILSDISLTIKMNSKTTIVG 507

Query: 73  SNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLG-GEWRREVAFAGF 131
            +G+GK+T+ K+          +V      A     L +   L  +     R+ + +   
Sbjct: 508 MSGSGKSTLAKL----------LVGFF--QARSGEILLNGFSLKDIDRHTLRQFINYLPQ 555

Query: 132 EVPIQMDVSAEKMIFGV-AGIDPQRRAELIKVLDI----------------DLSWRMHKV 174
           E  I      E ++ G    +      E+    +I                +LS     +
Sbjct: 556 EPYIFSGSILENLLLGAKENVSQD---EIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612

Query: 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 234
           S GQ++R+ +   LL   KVL+LDE T +LD +    ++  L    ++   TII+  H  
Sbjct: 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK---TIIFVAHRL 669

Query: 235 DGLENWPSHIVYVAHGKL 252
             +      I+ + HGK+
Sbjct: 670 S-VAKQSDKIIVLDHGKI 686

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 58.4 bits (141), Expect = 7e-10
 Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 24/237 (10%)

Query: 43  IDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-------GKHMVEPEM 95
           ID H   G   ++   +L  NAGD   ++GS+G+GK+T L+ I        G  +V  + 
Sbjct: 9   IDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT 68

Query: 96  VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-----IFGVAG 150
           + ++ R       +     L  L    R  + F  F +   M V    M     + G++ 
Sbjct: 69  INLV-RDKDGQLKVADKNQLRLL--RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 125

Query: 151 IDPQRRAELIKVLD---IDLSWRMH---KVSDGQRRRVQICMGLLKPFKVLLLDEITVDL 204
            + + RA  +K L    ID   +      +S GQ++RV I   L    +VLL DE T  L
Sbjct: 126 QEARERA--VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183

Query: 205 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261
           D     ++LR +++  EE G T++  TH      +  SH++++  GK++     +++
Sbjct: 184 DPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239

Length = 257

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 25/216 (11%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G+  ++ND +L+L  G    L+G NG GK+T+LK      ++ P+   V       D  +
Sbjct: 13  GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA--RLLTPQSGTVF----LGDKPI 66

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI----------FG-VAGIDPQRRAE 158
           +             R +A           ++  +++          +G ++  D  R  +
Sbjct: 67  SMLSSRQL-----ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQ 121

Query: 159 LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
            ++   I+     R+  +S GQR+R  + M L +   V+LLDE T  LD+  + +L+R +
Sbjct: 122 AMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLM 181

Query: 217 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           R E   +G T++   H  +    +  H+V +A+G +
Sbjct: 182 R-ELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHV 216

Length = 255

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 18/186 (9%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
           P    L+++    +  G+R L+ G +GAGKT++L+ + G   + P     +   A     
Sbjct: 403 PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG---LWPWGSGRISMPADSALL 459

Query: 109 LTSSGDLSYLG-GEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL 167
                   YL  G  R  + +               +     G+      +L + LD + 
Sbjct: 460 FLPQ--RPYLPQGTLREALCYPNAAPDFSDAELVAVLH--KVGLG-----DLAERLDEED 510

Query: 168 SWRMHKVSDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 226
            W    +S G+++R+    + L KP K + LDE T  LD      L + L++E     AT
Sbjct: 511 RWD-RVLSGGEQQRLAFARLLLHKP-KWVFLDEATSALDEETEDRLYQLLKEELP--DAT 566

Query: 227 IIYATH 232
           +I   H
Sbjct: 567 VISVGH 572

Length = 604

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 28/220 (12%)

Query: 26  NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
             +  + +  + F YP         +T  + D + ++  G+   +VG NG+GK+T+ K++
Sbjct: 1   MKEEIIRVEHISFRYPD-------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLL 53

Query: 86  GGKHMVEPEMVKVLGRSAFHDTA---------LTSSGDLSYLGGEWRREVAFAGFEVPIQ 136
            G  + E   + V G     +T          +  + D  ++G   + +VAF G E    
Sbjct: 54  NGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAF-GLE---N 109

Query: 137 MDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL-LKPFKVL 195
           + V  E+M+  V      +    + + D  L+   H++S GQ++RV I   L L+P  ++
Sbjct: 110 IGVPREEMVERV-----DQALRQVGMEDF-LNREPHRLSGGQKQRVAIAGVLALQP-DII 162

Query: 196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 235
           +LDE T  LD   R ++L  +R+  E++G T++  TH  D
Sbjct: 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202

Length = 279

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 38/219 (17%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  +   +         G    + D +L++  G+   ++G +GAGK+T+++ I G   
Sbjct: 2   IELKNVSKVFGD-----TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA--FAGFEVPIQMDVSAEKMIFG- 147
                V V G     D  L S  +L     + RR +   F  F      ++ + + +F  
Sbjct: 57  PTSGSVLVDGT----DLTLLSGKELR----KARRRIGMIFQHF------NLLSSRTVFEN 102

Query: 148 ------VAGIDPQRRAELIKVLD----IDLSWRMHK----VSDGQRRRVQICMGLLKPFK 193
                 +AG+      E  +VL+    + L  +       +S GQ++RV I   L    K
Sbjct: 103 VALPLEIAGVPKAEIEE--RVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160

Query: 194 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           VLL DE T  LD      +L  LR    E G TI+  TH
Sbjct: 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 57.9 bits (140), Expect = 9e-10
 Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 30/217 (13%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           GS   ++D  L +  G    L+G +G+GK+T+L+II G    +   +++ G+ A    A 
Sbjct: 11  GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR 70

Query: 110 TSSGDLSYLGGEWRREVAF-----AGFEVPIQMDVSAEKMIFG--VAGIDP----QRRAE 158
                         R++ F     A F+    + V  + + FG  +          R  E
Sbjct: 71  -------------DRKIGFVFQHYALFK---HLTVR-DNIAFGLEIRKHPKAKIKARVEE 113

Query: 159 LIKVLDID-LSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
           L++++ ++ L  R  +++S GQR+RV +   L    +VLLLDE    LD   R +L  +L
Sbjct: 114 LLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173

Query: 217 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
           RK  +E   T ++ TH  +        IV +++GK++
Sbjct: 174 RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 56/216 (25%), Positives = 107/216 (49%), Gaps = 24/216 (11%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR--SAFHD 106
           P  T  ++   ++++AG+   LVG +GAGK+T+LK+I  + +     ++V G+  S    
Sbjct: 11  PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRG 70

Query: 107 TALTSSGDLSYLGGEWRRE--VAFAGFEVPIQMDVSAEKMIFG--VAGIDPQRRAELIK- 161
            A      + YL    RR+  V F  F +    +V  E + F   V G+ P+   + +  
Sbjct: 71  RA------IPYL----RRKIGVVFQDFRLLPDRNV-YENVAFALEVTGVPPREIRKRVPA 119

Query: 162 VLD-IDLSWRMH----KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
            L+ + LS +      ++S G+++RV I   ++    +L+ DE T +LD     +++  L
Sbjct: 120 ALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179

Query: 217 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           +K   + G T++ ATH  + ++     ++ +  GKL
Sbjct: 180 KK-INKAGTTVVVATHAKELVDTTRHRVIALERGKL 214

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 52/203 (25%), Positives = 100/203 (49%), Gaps = 24/203 (11%)

Query: 60  LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLG 119
           L +  GD  +++G  G+GK+ +L+ I G   ++P+  K+L              D++ L 
Sbjct: 20  LEVERGDYFVILGPTGSGKSVLLETIAG--FIKPDSGKILLNGK----------DITNLP 67

Query: 120 GEWRREVAFA--GFEVPIQMDVSAEKMIFGVAGI------DPQRRAELIKVLDID--LSW 169
            E +R++++    + +   M V  + + +G+           ++  E+ ++L ID  L+ 
Sbjct: 68  PE-KRDISYVPQNYALFPHMTVY-KNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR 125

Query: 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 229
           +   +S G+++RV I   L+   K+LLLDE    LDV  +  L   L+K  +E G T+++
Sbjct: 126 KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLH 185

Query: 230 ATHIFDGLENWPSHIVYVAHGKL 252
            TH F+        +  + +GKL
Sbjct: 186 VTHDFEEAWALADKVAIMLNGKL 208

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 38/200 (19%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    ++  +L +  G+   L+G +G GKTT+L++I G     P                
Sbjct: 11  GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG--FETP---------------- 52

Query: 110 TSSGDLSYLGGE-------WRREV--AFAGFEVPIQMDVSAEKMIFG--VAGIDP----Q 154
            +SG++  L G+        +R V   F  + +   + V  E + FG  +  +      +
Sbjct: 53  -TSGEI-LLDGKDITNLPPHKRPVNTVFQNYALFPHLTV-FENIAFGLRLKKLPKAEIKE 109

Query: 155 RRAELIKVLDID-LSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 212
           R AE + ++ ++  + R   ++S GQ++RV I   L+   KVLLLDE    LD+  R D+
Sbjct: 110 RVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM 169

Query: 213 LRFLRKECEERGATIIYATH 232
              L++  +E G T ++ TH
Sbjct: 170 QLELKRLQKELGITFVFVTH 189

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 10/208 (4%)

Query: 57  DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLS 116
           D   TL A     L G +G+GKT+++ +I G  +  P+     GR   +   L  +    
Sbjct: 16  DANFTLPARGITALFGPSGSGKTSLINMIAG--LTRPDE----GRIELNGRVLVDAEKGI 69

Query: 117 YLGGEWRR-EVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHK 173
           +L  E RR    F    +     V    + +G+      +  +L+ +L I+  L      
Sbjct: 70  FLPPEKRRIGYVFQDARLFPHYTV-RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT 128

Query: 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 233
           +S G+++RV I   LL   ++LL+DE    LD+  + ++L +L +  +E    I+Y +H 
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS 188

Query: 234 FDGLENWPSHIVYVAHGKLQLAMPMDKV 261
            D +      +V + +GK++ + P+++V
Sbjct: 189 LDEVLRLADRVVVLENGKVKASGPLEEV 216

Length = 352

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 47/244 (19%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  L   YP             + +  L +N G+   ++G +GAGK+T+L+ I    +
Sbjct: 2   LEVENLSKVYPN--------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINR--L 51

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA--FAGFEVPIQMDV--------- 139
           VEP      G      T +T          + RR +   F  + +  ++ V         
Sbjct: 52  VEP----SSGSILLEGTDITKLRGKKLR--KLRRRIGMIFQHYNLIERLTVLENVLHGRL 105

Query: 140 ---SAEKMIFG-VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK 193
                 + + G  +  D +R    ++ + +      R  ++S GQ++RV I   L +   
Sbjct: 106 GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165

Query: 194 VLLLDEITVDLDVLARADLLRFLRKECEERGATII-----------YATHIFDGLENWPS 242
           ++L DE    LD      ++ +L++  +E G T+I           YA  I  GL+    
Sbjct: 166 LILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIV-GLKA--G 222

Query: 243 HIVY 246
            IV+
Sbjct: 223 EIVF 226

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 36/201 (17%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    ++D +L + +G+   L+G +G+GKTT+L++I G  +  P+     G   F     
Sbjct: 13  GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG--LERPDS----GTILFGGE-- 64

Query: 110 TSSGDLSYLGGEWRREVAF-----AGFEVPIQMDVSAEKMIFGV-----------AGIDP 153
               D + +  +  R V F     A F     M V  + + FG+           A I  
Sbjct: 65  ----DATDVPVQ-ERNVGFVFQHYALFR---HMTV-FDNVAFGLRVKPRSERPPEAEIR- 114

Query: 154 QRRAELIKVLDID-LSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 211
            +  EL+K++ +D L+ R   ++S GQR+RV +   L    KVLLLDE    LD   R +
Sbjct: 115 AKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKE 174

Query: 212 LLRFLRKECEERGATIIYATH 232
           L R+LR+  +E   T ++ TH
Sbjct: 175 LRRWLRRLHDELHVTTVFVTH 195

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 48/262 (18%)

Query: 56  NDFTLTLNAGD-----RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110
            +FTL +  G         ++G NG GKTT +K++ G   ++P+   +            
Sbjct: 11  GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--LKPDEGDI------------ 56

Query: 111 SSGDLSYLGGEWRRE-VAFAGFEVPIQMDVSAEKMIFGV---AGIDPQRRAELIKVLDID 166
                     E   + V++    +    + +   ++  +       P  + E+ K L I+
Sbjct: 57  ----------EIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIE 106

Query: 167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 224
             L   + ++S G+ +RV I   L K   + LLDE +  LDV  R    + +R+  E   
Sbjct: 107 QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166

Query: 225 AT-------IIYATHIFDGL---ENWPSHIVY-VAHGKLQLAMPMDKVKEASKLSLMRTV 273
            T       II   ++ D L   E  PS  V  VA+    L   M++  +   ++  R  
Sbjct: 167 KTAFVVEHDIIMIDYLADRLIVFEGEPS--VNGVANPPQSLRSGMNRFLKNLDITFRRDP 224

Query: 274 ESWLRKERDEERKRRRERKASG 295
           E+   +       + RE+K SG
Sbjct: 225 ETGRPRINKLGSVKDREQKESG 246

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 57.5 bits (140), Expect = 3e-09
 Identities = 60/216 (27%), Positives = 86/216 (39%), Gaps = 57/216 (26%)

Query: 49  PGSTPLINDFTLTLNAGDRCL-LVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
            G   L +  +LT+  G     L+G NGAGK+T++KI+ G   V P              
Sbjct: 19  GGVKAL-DGVSLTVRPG-EVHALLGENGAGKSTLMKILSG---VYP-------------- 59

Query: 108 ALTSSGDLSYLGGEWRREVAF--------AGFE--------VPIQMDVSAEKMIFG---- 147
               SG++   G    + VAF        AG          VP  + V AE +  G    
Sbjct: 60  --PDSGEILIDG----KPVAFSSPRDALAAGIATVHQELSLVP-NLSV-AENIFLGREPT 111

Query: 148 --VAGIDPQR-RAELIKVLD-----IDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE 199
                ID +  R    ++L      ID    +  +S  QR+ V+I   L    +VL+LDE
Sbjct: 112 RRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDE 171

Query: 200 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 235
            T  L V     L   +R   + +G  IIY +H  D
Sbjct: 172 PTAALTVKETERLFDLIR-RLKAQGVAIIYISHRLD 206

Length = 500

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 57/205 (27%)

Query: 52  TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
            P++ DF+  +  G+  L++G  G+G +T+LK +  +       V V             
Sbjct: 20  IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT---EGNVSV------------- 63

Query: 112 SGDLSYLGGE-------WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELI--KV 162
            GD+ Y G         +  E+ +          VS E + F            L   + 
Sbjct: 64  EGDIHYNGIPYKEFAEKYPGEIIY----------VSEEDVHF----------PTLTVRET 103

Query: 163 LDIDLSWRMH----KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 218
           LD  L  + +     +S G+R+RV I   L+    VL  D  T  LD     ++L+ +R 
Sbjct: 104 LDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT 163

Query: 219 ECEERGATIIYA--------THIFD 235
             +    T   +          +FD
Sbjct: 164 MADVLKTTTFVSLYQASDEIYDLFD 188

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 46/204 (22%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   +  D  L ++ G+  + VG +G GK+T+L++I G   +                  
Sbjct: 14  GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI------------------ 55

Query: 110 TSSGDLSYLGGEWRREVA---------FAGFEVPIQMDVSAEKMIFG--VAGIDP----Q 154
            +SGDL ++G +   +V          F  + +   + V AE M FG  +AG       Q
Sbjct: 56  -TSGDL-FIGEKRMNDVPPAERGVGMVFQSYALYPHLSV-AENMSFGLKLAGAKKEEINQ 112

Query: 155 RRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD----VLA 208
           R  ++ +VL +   L  +   +S GQR+RV I   L+    V LLDE   +LD    V  
Sbjct: 113 RVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172

Query: 209 RADLLRFLRKECEERGATIIYATH 232
           R ++ R  ++     G T+IY TH
Sbjct: 173 RIEISRLHKR----LGRTMIYVTH 192

Length = 369

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 56/230 (24%), Positives = 111/230 (48%), Gaps = 22/230 (9%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G+  +++D +L +  G    ++G NGAGK+T+L ++    +++ +  ++       +   
Sbjct: 12  GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSGEITIDG--LELTS 67

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--------VAGIDPQRRAELI 160
           T S +L+       ++++    E  I   ++   ++ FG        +   D +   E I
Sbjct: 68  TPSKELA-------KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120

Query: 161 KVLDI-DLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 218
           + L + DLS R + ++S GQR+R  I M L +    +LLDE   +LD+     +++ LR+
Sbjct: 121 EYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180

Query: 219 ECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 268
             +E G TI+   H  +    +  HIV + +GK+      D++ +   LS
Sbjct: 181 LADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILS 230

Length = 252

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 35/194 (18%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL--------GRSAF 104
            L +  + TLNAG+   + G NGAGKT++L+I+ G  +  P+  +VL         R  +
Sbjct: 15  ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG--LARPDAGEVLWQGEPIRRQRDEY 72

Query: 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFGVAGIDPQRRAELIKVL 163
           H        DL YLG +        G    I+ +++A E + F      P     L + L
Sbjct: 73  HQ-------DLLYLGHQ-------PG----IKTELTALENLRFYQRLHGPGDDEALWEAL 114

Query: 164 D-IDLSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 218
             + L+        ++S GQ+RRV +    L    + +LDE    +D    A L   L +
Sbjct: 115 AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174

Query: 219 ECEERGATIIYATH 232
              E+G  +I  TH
Sbjct: 175 HA-EQGGMVILTTH 187

Length = 204

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 45/202 (22%)

Query: 54  LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
           ++ND +L + +G    ++GS+G+GKTT+L  I G+         V G         T+SG
Sbjct: 22  ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR---------VEGGG-------TTSG 65

Query: 114 DLSYLG-----GEWRREVAFAGFEVPIQMDVSA------EKMIFGV--------AGIDPQ 154
            + + G      ++++ VA+    V  Q D+        E + +          +    +
Sbjct: 66  QILFNGQPRKPDQFQKCVAY----VR-QDDILLPGLTVRETLTYTAILRLPRKSSDAIRK 120

Query: 155 RRAELIKVLDIDLS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 210
           +R E + + D+ L+      +  +S G+RRRV I + LL   KVL+LDE T  LD     
Sbjct: 121 KRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL 180

Query: 211 DLLRFLRKECEERGATIIYATH 232
           +L+  L +    R   +I   H
Sbjct: 181 NLVSTLSQLA-RRNRIVILTIH 201

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 25/87 (28%), Positives = 46/87 (52%)

Query: 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 234
           S GQR+RV +   L++   +LLLDE    LD   RA++L  + + C+ER  T++  TH  
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP 190

Query: 235 DGLENWPSHIVYVAHGKLQLAMPMDKV 261
           +        +V++ +G++       ++
Sbjct: 191 EDAARIADRVVFLDNGRIAAQGSTQEL 217

Length = 231

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.5 bits (133), Expect = 9e-09
 Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 20/231 (8%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
           P ++  + D  L +  G    L+G  G+GK+T+L+ + G  +++P      G+    D  
Sbjct: 16  PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNG--LLQPTE----GKVTVGDIV 69

Query: 109 LTSSGDLSYLGGEWRREVAFAG-------FEVPIQMDVSAEKMIFGVAGIDPQR-RAELI 160
           ++S+     +    R++V           FE  +  DV+     FG+     ++  AE +
Sbjct: 70  VSSTSKQKEIK-PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKL 128

Query: 161 KVLDIDLS-WRMH--KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 217
           +++ +    W     ++S GQ RRV I   L    +VL+LDE T  LD  AR ++++ L 
Sbjct: 129 EMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQ-LF 187

Query: 218 KECEERGATIIYATHIFDGLENWPSHIVYVAHGK-LQLAMPMDKVKEASKL 267
           +   + G T++  TH+ D + ++  ++  +  G  +    P D  +E   L
Sbjct: 188 ESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFL 238

Length = 288

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 32/189 (16%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           VE   + F YPG D        P ++  +L +  G+   LVG +G+GK+T++ +I     
Sbjct: 331 VEFRNVTFRYPGRD-------RPALDSISLVIEPGETVALVGRSGSGKSTLVNLI--PRF 381

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG 150
            EP+     G+       L       Y     RR+VA    +V +  D  A  + +G   
Sbjct: 382 YEPDS----GQILLDGHDLAD-----YTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE 432

Query: 151 IDPQRRAE--------------LIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLL 196
              +   E              L   LD  +      +S GQR+R+ I   LLK   +L+
Sbjct: 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILI 492

Query: 197 LDEITVDLD 205
           LDE T  LD
Sbjct: 493 LDEATSALD 501

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 30/212 (14%)

Query: 29  PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
             + ++ L  +Y G            + D +LT+ +G+  +++G +G GKTT+L +I G 
Sbjct: 2   CMLNVSHLSLSYEGK-------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG- 53

Query: 89  HMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG- 147
             V P      G    +   +   G          R V F    +   ++V  + + FG 
Sbjct: 54  -FVTP----SRGSIQLNGRRIEGPGA--------ERGVVFQNEALLPWLNV-IDNVAFGL 99

Query: 148 -VAGIDPQRRAELIK--VLDIDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEI 200
            + GI+  +R E+    +  + L    HK    +S G R+RV I   L    ++LLLDE 
Sbjct: 100 QLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159

Query: 201 TVDLDVLARADLLRFLRKECEERGATIIYATH 232
              LD L R  +   L    +E G  ++  TH
Sbjct: 160 FGALDALTREQMQELLLDLWQETGKQVLLITH 191

Length = 259

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 33/235 (14%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G T +++   L++  G    LVG NGAGKTT+L+ I G        V V G     D   
Sbjct: 14  GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGD----DVEA 69

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI----------FGVAGIDPQR---- 155
            S+   S       R VA    +  +  +    +++          F       +     
Sbjct: 70  LSARAAS-------RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVER 122

Query: 156 ---RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 212
              R  + +  D  ++     +S G+R+RV +   L +   VLLLDE T  LD+  +   
Sbjct: 123 AMERTGVAQFADRPVT----SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRT 178

Query: 213 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL 267
           L  +R+  ++ G T + A H  D    +   +V +A G+++ A P   V  A  L
Sbjct: 179 LELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTL 232

Length = 402

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 20/184 (10%)

Query: 59  TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYL 118
           T  +  G+   L G +GAGK+T+LK+I G  +  P   K+    + HD     + ++ +L
Sbjct: 22  TFHMRPGEMAFLTGHSGAGKSTLLKLICG--IERPSAGKIW--FSGHDITRLKNREVPFL 77

Query: 119 GGEWRREVAFAGFEVPIQMD------VSAEKMIFGVAGIDPQRR--AELIKV--LDIDLS 168
               RR++     +  + MD      V+   +I G +G D +RR  A L KV  LD   +
Sbjct: 78  ----RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN 133

Query: 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 228
           + + ++S G+++RV I   ++    VLL DE T +LD      +LR L +E    G T++
Sbjct: 134 FPI-QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR-LFEEFNRVGVTVL 191

Query: 229 YATH 232
            ATH
Sbjct: 192 MATH 195

Length = 222

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 64/227 (28%), Positives = 90/227 (39%), Gaps = 68/227 (29%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP--------EMVKVL-- 99
           G   LI+D +  L  G    ++G NGAGK+T+ ++I G+   +P        E VK+   
Sbjct: 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ--EQPDSGTIKIGETVKLAYV 390

Query: 100 --GRSAFHDT-----ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGID 152
              R A          ++   D+  LG            EVP +  V      F   G D
Sbjct: 391 DQSRDALDPNKTVWEEISGGLDIIQLGK----------REVPSRAYVGR----FNFKGSD 436

Query: 153 PQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 212
            Q++   +  L           S G+R RV +   L     VLLLDE T DLDV    + 
Sbjct: 437 QQKK---VGQL-----------SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV----ET 478

Query: 213 LRFLRKECEERG--ATII---------YATHI--FDGLENWPSHIVY 246
           LR L +   E    A +I          ATHI  F+G     SH+ +
Sbjct: 479 LRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEG----DSHVEW 521

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 50/228 (21%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G T ++++  L ++ G+  +++G +G+GK+T+L+ I   + +E                 
Sbjct: 12  GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCI---NKLEE---------------- 52

Query: 110 TSSGDL-----SYLGG-----EWRRE--VAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRA 157
            +SGDL                 R+E  + F  F +   +  + E ++FG   +    + 
Sbjct: 53  ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL-TALENVMFGPLRVRGASKE 111

Query: 158 E--------LIKVLDIDLSWRMH----KVSDGQRRRVQICMGL-LKPFKVLLLDEITVDL 204
           E        L KV    L+ R H    ++S GQ++RV I   L +KP K++L DE T  L
Sbjct: 112 EAEKQARELLAKV---GLAERAHHYPSELSGGQQQRVAIARALAVKP-KLMLFDEPTSAL 167

Query: 205 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           D   R ++L+ ++   EE G T++  TH     E   S ++++  G++
Sbjct: 168 DPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRI 214

Length = 240

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 21/198 (10%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
              T  +    + +  G+   ++G NGAGK+T+ + + G  +++P      GR  F    
Sbjct: 16  SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNG--ILKP----SSGRILFDGKP 69

Query: 109 LTSSGDLSYLGGEWRREVAFAGFEVP--------IQMDVSAEKMIFGVAGIDPQRRAE-- 158
           +    D S  G    RE     F+ P        +  DVS   +   +   + ++R +  
Sbjct: 70  I----DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNA 125

Query: 159 LIKVLDIDLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 217
           L +     L  +  H +S GQ++RV I   L+   KVL+LDE T  LD +  +++++ L 
Sbjct: 126 LKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLV 185

Query: 218 KECEERGATIIYATHIFD 235
           +  +E G TII ATH  D
Sbjct: 186 EMQKELGLTIIIATHDID 203

Length = 283

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 23/206 (11%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
            ++ +  L +  GD   +VG +GAGKTT+L++I G      E               T S
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456

Query: 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-DLSWRM 171
             +         E      EV I   +          G D     E++    + D     
Sbjct: 457 ALIP-------GEYEPEFGEVTILEHL------RSKTG-DLNAAVEILNRAGLSDAVLYR 502

Query: 172 HK---VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 228
            K   +S GQ+ R ++   L +   VLL+DE    LD L    + R + +   E G T+I
Sbjct: 503 RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562

Query: 229 YATH---IFDGLENWPSHIVYVAHGK 251
             TH   + + L   P  ++ V +GK
Sbjct: 563 VVTHRPEVGNALR--PDTLILVGYGK 586

Length = 593

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 53/200 (26%)

Query: 43  IDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102
           +   P      L+ + +     G+   ++G +GAGK+T+L  + G+              
Sbjct: 13  VKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR------------- 59

Query: 103 AFHDTALTSSGDLSYLGG------EWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR 156
               T L  SG++  + G       +R+ + +    VP Q D+                 
Sbjct: 60  ----TGLGVSGEV-LINGRPLDKRSFRKIIGY----VP-QDDI----------------- 92

Query: 157 AELIKVLDI----DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 212
             L   L +      + ++  +S G+R+RV I + L+    +L LDE T  LD  +   +
Sbjct: 93  --LHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV 150

Query: 213 LRFLRKECEERGATIIYATH 232
           +  LR+  +  G TII + H
Sbjct: 151 MSLLRRLADT-GRTIICSIH 169

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 31/191 (16%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
           PL+   +  L AG    L GSNGAGKTT+LK+I G    E   +    +S   D      
Sbjct: 15  PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLC---- 70

Query: 113 GDLSYLGGEWRREVAFAGFEVPIQMDVS-AEKMIF------GVAGIDPQRRAELIKVLDI 165
                    +++++ F G    I   ++  E  ++      G  GI      EL ++  +
Sbjct: 71  --------TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGIT-----ELCRLFSL 117

Query: 166 D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 223
           +  + +    +S GQ+R+V +    +   K+ LLDE  V LD L+   LL  + K  E R
Sbjct: 118 EHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS---LLTIITKIQEHR 174

Query: 224 --GATIIYATH 232
             G  ++  +H
Sbjct: 175 AKGGAVLLTSH 185

Length = 200

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 43/225 (19%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +ND +L +  G+   L+G NGAGKTT+  +I G    +P      G   F    +T    
Sbjct: 20  VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG--FYKPSS----GTVIFRGRDIT---- 69

Query: 115 LSYLGGEWRREVAFAG----FEVP-----------IQMDVSAEKMIFGVAGIDPQRRAE- 158
                G     +A  G    F++            + +   A   + G+ G    R+ E 
Sbjct: 70  -----GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEER 124

Query: 159 --------LIKVLDIDLSW--RMHKVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVL 207
                   L++ + +          +S GQ+RR++I   L  +P K+LLLDE    L+  
Sbjct: 125 EARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQP-KLLLLDEPAAGLNPE 183

Query: 208 ARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
              +L   +R+  +  G TI+   H    +      IV + +G++
Sbjct: 184 ETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228

Length = 250

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 51/197 (25%), Positives = 75/197 (38%), Gaps = 48/197 (24%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E   + F YP     P     P ++   LT+  G+   LVG +GAGK+T+ +++     
Sbjct: 338 IEFEQVNFAYPA---RP---DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL----- 386

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGG---------EWRREVAFAGFEVPIQMDVSA 141
                        F+D     SG +  L G         E R  +A    +  +      
Sbjct: 387 -----------LRFYD---PQSGRIL-LDGVDLRQLDPAELRARMALVPQDPVLFAASVM 431

Query: 142 EKMIFGV---------AGIDPQRRAELIKVL----DIDLSWRMHKVSDGQRRRVQICMGL 188
           E + +G          A        E I  L    D  L  R   +S GQR+R+ I   +
Sbjct: 432 ENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491

Query: 189 LKPFKVLLLDEITVDLD 205
           LK   +LLLDE T  LD
Sbjct: 492 LKDAPILLLDEATSALD 508

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 63/260 (24%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  L  ++         G   ++    L +  G+   ++G +G+GK+T+L++I G  +
Sbjct: 1   IELRGLTKSF---------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG--L 49

Query: 91  VEPE--MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF-----AGF---------EVP 134
           + P+   V + G     D +  S  +L  L    RR +       A F           P
Sbjct: 50  LRPDSGEVLIDG----EDISGLSEAELYRL----RRRMGMLFQSGALFDSLTVFENVAFP 101

Query: 135 IQM----------DVSAEKM-IFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQ 183
           ++           ++  EK+   G+ G +    AEL               S G ++RV 
Sbjct: 102 LREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAEL---------------SGGMKKRVA 146

Query: 184 ICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 242
           +   L L P ++LL DE T  LD +A   +   +R   +E G T I  TH  D       
Sbjct: 147 LARALALDP-ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIAD 205

Query: 243 HIVYVAHGKLQLAMPMDKVK 262
            I  +  GK+      ++++
Sbjct: 206 RIAVLYDGKIVAEGTPEELR 225

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 20/211 (9%)

Query: 57  DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV-LGRSAFHDTALTSSGDL 115
           D  +++ +G    ++G  G+GK+T+L+ + G  +++P    V +G      TA   +  L
Sbjct: 25  DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG--LLQPTSGTVTIGERVI--TAGKKNKKL 80

Query: 116 SYLGGEWRREVA----FAG---FEVPIQMDVSAEKMIFGVAGIDPQRRA-ELIKV--LDI 165
             L    R++V     F     FE  ++ D+    M FGV+  D +++A E+I++  L  
Sbjct: 81  KPL----RKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE 136

Query: 166 DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 224
           +L  R   ++S GQ RRV I   L    +VL+LDE T  LD   R +++    K  +E+G
Sbjct: 137 ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG 196

Query: 225 ATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255
            T +  TH  +    +   IV +  G + L 
Sbjct: 197 LTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227

Length = 290

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 54/197 (27%), Positives = 77/197 (39%), Gaps = 46/197 (23%)

Query: 61  TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS---GDLSY 117
           TL AG+  +L G NG+GKTT+L++I G  ++ P      G        +          Y
Sbjct: 24  TLAAGEALVLTGPNGSGKTTLLRLIAG--LLPPAA----GTIKLDGGDIDDPDVAEACHY 77

Query: 118 LG-----------GE----WRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 162
           LG            E    W     F G E   ++D++A     G+A +       L   
Sbjct: 78  LGHRNAMKPALTVAENLEFWAA---FLGGE---ELDIAAALEAVGLAPLAHLPFGYL--- 128

Query: 163 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 222
                       S GQ+RRV +   L+    + +LDE T  LD  A A     +R     
Sbjct: 129 ------------SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL-A 175

Query: 223 RGATIIYATHIFDGLEN 239
           +G  +I ATHI  GL  
Sbjct: 176 QGGIVIAATHIPLGLPG 192

Length = 207

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 50/175 (28%), Positives = 72/175 (41%), Gaps = 34/175 (19%)

Query: 60  LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR--SAFHDTALTSSGDLSY 117
           LTLNAGD    VG+NG+GK+ + + + G      E+  + G   S F      S   L  
Sbjct: 24  LTLNAGDSWAFVGANGSGKSALARALAG------ELPLLSGERQSQFSHITRLSFEQLQK 77

Query: 118 L-GGEWRR-----------EVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI 165
           L   EW+R           +      E+ IQ +V            DP R  +L +   I
Sbjct: 78  LVSDEWQRNNTDMLSPGEDDTGRTTAEI-IQDEVK-----------DPARCEQLAQQFGI 125

Query: 166 D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 218
              L  R   +S G+ R+  +C  L+    +L+LDE    LDV +R  L   L  
Sbjct: 126 TALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLAS 180

Length = 490

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 62/242 (25%), Positives = 112/242 (46%), Gaps = 48/242 (19%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTT-------ILK 83
           +E   LK++YP  DG      T  +         G+   L+G NGAGK+T       ILK
Sbjct: 2   LETRDLKYSYP--DG------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK 53

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP--------I 135
              G+ +++ E +K   +S                  E R+ V    F+ P        +
Sbjct: 54  PTSGEVLIKGEPIKYDKKSLL----------------EVRKTVGIV-FQNPDDQLFAPTV 96

Query: 136 QMDVSAEKMIFGVAGIDPQRRA-ELIKVLDIDLSWRM--HKVSDGQRRRVQICMGLL--K 190
           + DV+   +  G++  + ++R  E +K + ++       H +S GQ++RV I  G+L  K
Sbjct: 97  EEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIA-GILAMK 155

Query: 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250
           P ++++LDE T  LD +  + +++ L  +  + G TII +TH  D +  +   +  ++ G
Sbjct: 156 P-EIIVLDEPTSGLDPMGASQIMKLL-YDLNKEGITIIISTHDVDLVPVYADKVYVMSDG 213

Query: 251 KL 252
           K+
Sbjct: 214 KI 215

Length = 275

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 49/202 (24%), Positives = 99/202 (49%), Gaps = 33/202 (16%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    ++D + ++  G+   L+G NGAGKTT +++I G  ++ P+  +VL    F    L
Sbjct: 11  GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG--IILPDSGEVL----FDGKPL 64

Query: 110 TSSG--DLSYLGGE---WRREVAFAGFEVPIQMDVSAEKMIF-----GVAGIDPQRRA-E 158
             +    + YL  E   + +            M V  +++++     G+   + +RR  E
Sbjct: 65  DIAARNRIGYLPEERGLYPK------------MKV-IDQLVYLAQLKGLKKEEARRRIDE 111

Query: 159 LIKVLDIDLSW--RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
            ++ L++      R+ ++S G +++VQ    ++   ++L+LDE    LD +   +LL+ +
Sbjct: 112 WLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN-VELLKDV 170

Query: 217 RKECEERGATIIYATHIFDGLE 238
            +E    G T+I +TH  + +E
Sbjct: 171 IRELARAGKTVILSTHQMELVE 192

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 52.9 bits (127), Expect = 8e-08
 Identities = 54/243 (22%), Positives = 104/243 (42%), Gaps = 23/243 (9%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    +ND  L +  G+  +++G +G+GK+T ++++    ++EP   ++     F D   
Sbjct: 4   GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRML--NRLIEPTAGQI-----FIDGEN 56

Query: 110 TSSGDLSYLGGEWRREVA--FAGFEVPIQMDVSAEKMIFG--VAGIDPQRRAE----LIK 161
                   L    R+++   F  F +   M +  +    G  + G   Q R E    L+K
Sbjct: 57  IMKQSPVELREVRRKKIGMVFQQFALFPHMTI-LQNTSLGPELLGWPEQERKEKALELLK 115

Query: 162 VLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 219
           ++ ++        ++S G ++RV +   L     +LL+DE    LD L R  +   L+K 
Sbjct: 116 LVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL 175

Query: 220 CEERGATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMPMDKVKEASKLSLMRTVESWLR 278
                 TI++ TH  D        IV +  G++ Q+  P + ++  +       VE ++ 
Sbjct: 176 QATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPAN----EYVEEFIG 231

Query: 279 KER 281
           K  
Sbjct: 232 KVD 234

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 40/222 (18%)

Query: 29  PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
             +E+  ++ +YP  +         ++   +L + AG+   +VG++G+GK+T++ I+G  
Sbjct: 3   ALLELKDIRRSYPSGEE-----QVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL 57

Query: 89  HMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRRE---------------VAFAGFEV 133
                   +V G+    D A   +  L+ L    RRE                A    EV
Sbjct: 58  DKPTSGTYRVAGQ----DVATLDADALAQL----RREHFGFIFQRYHLLSHLTAAQNVEV 109

Query: 134 PIQMDVSAEKMIFGVAGIDPQRRA-ELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK 190
           P    V A     G+       RA EL++ L ++  + ++  ++S GQ++RV I   L+ 
Sbjct: 110 PA---VYA-----GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161

Query: 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
             +V+L DE T  LD  +  +++  L  +  +RG T+I  TH
Sbjct: 162 GGQVILADEPTGALDSHSGEEVMAIL-HQLRDRGHTVIIVTH 202

Length = 648

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 51.9 bits (125), Expect = 9e-08
 Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 27/234 (11%)

Query: 30  TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
           ++++N +   Y         G+   + D TL    G+  +L+G +GAGK+++L+++    
Sbjct: 2   SIQLNGINCFY---------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52

Query: 90  MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA--FAGFEVPIQMDV-----SAE 142
           M     + + G + F  +   S   +  L    RR V   F  + +   + V      A 
Sbjct: 53  MPRSGTLNIAG-NHFDFSKTPSDKAIREL----RRNVGMVFQQYNLWPHLTVQQNLIEAP 107

Query: 143 KMIFGVAGIDPQRRA-ELIKVL---DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD 198
             + G++      RA +L++ L        + +H +S GQ++RV I   L+   +VLL D
Sbjct: 108 CRVLGLSKDQALARAEKLLERLRLKPYADRFPLH-LSGGQQQRVAIARALMMEPQVLLFD 166

Query: 199 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           E T  LD    A ++  +R E  E G T +  TH  +      S +VY+ +G +
Sbjct: 167 EPTAALDPEITAQIVSIIR-ELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219

Length = 242

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 50/226 (22%), Positives = 108/226 (47%), Gaps = 33/226 (14%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    +++ +  +  G+   L+G NGAGKTT  ++I G  ++EP                
Sbjct: 13  GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG--LLEP---------------- 54

Query: 110 TSSGDLSYLGGEWRREV-AFAGF---EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD- 164
            + G++++ GG   +E+    G+   E  +   ++ E  +  +A +    +AE+ K L  
Sbjct: 55  -TEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA 113

Query: 165 ----IDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
               +++  +  K    +S G ++++Q    ++   ++L+LDE    LD +   +LL+  
Sbjct: 114 WLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV-NVELLKDA 172

Query: 217 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 262
             E +E GATII+++H  + +E     ++ +  G+  L   ++ ++
Sbjct: 173 IFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIR 218

Length = 300

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 24/216 (11%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
           PG    + D +  +  G+   L G +GAGK+T+LK+I G     P   K+      HD +
Sbjct: 12  PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG--EERPTRGKI--LVNGHDLS 67

Query: 109 LTSSGDLSYLGGEWRRE--VAFAGFEVPIQMDVSAEKMIFG--VAGIDP---QRRAELIK 161
                ++ +L    RR+  V F  F +     V  E +     V G  P   +RR    +
Sbjct: 68  RLKGREIPFL----RRQIGVVFQDFRLLPDRTV-YENVALPLRVIGKPPREIRRRVS--E 120

Query: 162 VLD-IDLSWRMH----KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
           VLD + L  +      ++S G+++RV I   ++    VLL DE T +LD     +++R  
Sbjct: 121 VLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLF 180

Query: 217 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
            +E    G T++ ATH  + +      ++ +  G+L
Sbjct: 181 -EEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215

Length = 223

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 33/232 (14%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +++ +     G     +G NGAGK+T +KII G    +   V+V G     +        
Sbjct: 18  LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK------ 71

Query: 115 LSYLGGEWRREVAFAGFEVPIQMDVSAEKM------IFGVAGIDP-QRRAELIKVLDIDL 167
                 E +R + +     P+ +D+   +       I+G+ G    QR  E+I++  + L
Sbjct: 72  ------EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIEL--VGL 123

Query: 168 SWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLD---VLARADLLRFLRKEC 220
               HK    +S G R+RV +   L+   KVL+LDE T  LD   ++   ++++ + K+ 
Sbjct: 124 RPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD- 182

Query: 221 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRT 272
                TII +THI   +E     ++ +  GK+     +D++  A+K  ++  
Sbjct: 183 ----KTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQVIEV 230

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 231
           H++S GQR+RV I M L     +L+ DE T  LDV  +A +L  L++   E G  I++ T
Sbjct: 156 HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT 215

Query: 232 H 232
           H
Sbjct: 216 H 216

Length = 534

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 40/238 (16%)

Query: 29  PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
             +EI  L  ++         G   ++   +L++  G+  +++G +G+GK+T+L+ + G 
Sbjct: 1   MMIEIKNLSKSF---------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG- 50

Query: 89  HMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA--FAGFEVPIQMDVSAEKMIF 146
            + EP+     G        +    D+  L    RR+V   F  F +   + V  E +  
Sbjct: 51  -LEEPDS----GSITVDGEDVGDKKDILKL----RRKVGMVFQQFNLFPHLTV-LENVTL 100

Query: 147 G---VAGIDP-QRRAELIKVLD-IDLSWRMHK----VSDGQRRRVQI----CMGLLKPFK 193
               V  +   + R + +++L+ + L+ +       +S GQ++RV I     M    P K
Sbjct: 101 APVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM---DP-K 156

Query: 194 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
           V+L DE T  LD     ++L  ++   EE G T+I  TH           ++++  GK
Sbjct: 157 VMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGK 213

Length = 240

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 56/201 (27%)

Query: 58  FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT-SSGDLS 116
           F LT+  G+R  ++G +GAGK+T+L +I G                F    LT +SG L 
Sbjct: 18  FDLTVERGERVAILGPSGAGKSTLLNLIAG----------------F----LTPASGSL- 56

Query: 117 YLGGEWRREVAFAGFEVPIQMDVSAEKMIF---------GVA-----GIDPQRR---AEL 159
            L G+            P +  VS   M+F          VA     G++P  +   A+ 
Sbjct: 57  TLNGQDHTTTP------PSRRPVS---MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQR 107

Query: 160 IKVLDI-------DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 211
            K+  I       DL  R+  ++S GQR+RV +   L++   +LLLDE    LD   R +
Sbjct: 108 EKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167

Query: 212 LLRFLRKECEERGATIIYATH 232
           +L  + + C+ER  T++  +H
Sbjct: 168 MLTLVSQVCQERQLTLLMVSH 188

Length = 232

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 35/196 (17%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +    LT+  G+   L+G +G GK+T+L +I G                    A  +SG 
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG-------------------LAQPTSGG 41

Query: 115 LSYLGGEWR-----REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ-RRAELIKVLD--ID 166
           +   G +       R V F  + +   + V  E +   V  + P   ++E   +++  I 
Sbjct: 42  VILEGKQITEPGPDRMVVFQNYSLLPWLTVR-ENIALAVDRVLPDLSKSERRAIVEEHIA 100

Query: 167 L-------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 219
           L         R  ++S G ++RV I   L    KVLLLDE    LD L R +L   L + 
Sbjct: 101 LVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160

Query: 220 CEERGATIIYATHIFD 235
            EE   T++  TH  D
Sbjct: 161 WEEHRVTVLMVTHDVD 176

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 50/198 (25%), Positives = 97/198 (48%), Gaps = 18/198 (9%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   +++    ++ AG++  L+G +G+GK+TIL+I+     ++   ++V G   +H    
Sbjct: 11  GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGR 70

Query: 110 TSS---GDLSYLGGEWRREVA--FAGFEV-----PIQMDVSAEKMIFGVAGIDPQRRAEL 159
                  D  +L  + R ++   F  F +      +     A  ++ G+A  + ++RA  
Sbjct: 71  NGPLVPADEKHLR-QMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRA-- 127

Query: 160 IKVLDI----DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 214
           +++LD+    D +  M  ++S GQ++RV I   L    KV+L DE+T  LD     ++L 
Sbjct: 128 MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187

Query: 215 FLRKECEERGATIIYATH 232
            +R+   E   T++  TH
Sbjct: 188 VIRRLASEHDLTMLLVTH 205

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 13/83 (15%)

Query: 11  HKTEEEEERKMAVMENSKPT------VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNA 64
           +  +   E + A    S+P+      VE+  + F Y  ++        PLI +F+LTL  
Sbjct: 452 NPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLE-------PPLIENFSLTLQP 504

Query: 65  GDRCLLVGSNGAGKTTILKIIGG 87
           G R  LVG +G+GK+TI K++ G
Sbjct: 505 GQRVALVGGSGSGKSTIAKLVAG 527

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 38/198 (19%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
           P++ + +L++NAG+  +L G +G+GK+T+L+ +   ++ +   + V      H+      
Sbjct: 25  PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVR-----HE------ 73

Query: 113 GDLSYLGGEWRREVAFAGFEVPIQ-----------------MDVSAEKMI-FGVAGIDPQ 154
           G+   L     REV     EV                    +DV AE ++  GV     +
Sbjct: 74  GEWVDLVTAEPREV----LEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVAR 129

Query: 155 RRA-ELIKVLDI-DLSWRM--HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 210
            +A +L+  L++ +  W +     S G+++RV I  G +  + +LLLDE T  LD   RA
Sbjct: 130 AKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRA 189

Query: 211 DLLRFLRKECEERGATII 228
            ++  +R E + RGA ++
Sbjct: 190 VVVELIR-EAKARGAALV 206

Length = 235

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 31/202 (15%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKT-TILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
            ++ND +L + AG+   LVG +G+GK+ T L I+  + +  P +V   G   FH  +L  
Sbjct: 23  TVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFHGESLLH 80

Query: 112 SGDLSYLGGEWRREVAFAGFEVPIQMDVS------AEKMIFGVAGIDPQR-------RAE 158
           +     L G    ++A   F+ P+   VS       EK ++ V  +   R       R E
Sbjct: 81  A-SEQTLRGVRGNKIAMI-FQEPM---VSLNPLHTLEKQLYEVLSL--HRGMRREAARGE 133

Query: 159 LIKVLD--------IDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 210
           ++  LD          L+   H++S G+R+RV I M LL   ++L+ DE T  LDV  +A
Sbjct: 134 ILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193

Query: 211 DLLRFLRKECEERGATIIYATH 232
            +L+ LR+  +E    +++ TH
Sbjct: 194 QILQLLRELQQELNMGLLFITH 215

Length = 529

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 46/194 (23%)

Query: 55  INDFTLTLNAGD-RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
           +ND +L ++ G+ R + +G NGAGKTT++ +I GK    P+   VL    F  T LT   
Sbjct: 18  LNDLSLYVDPGELRVI-IGPNGAGKTTMMDVITGK--TRPDEGSVL----FGGTDLTG-- 68

Query: 114 DLSYLGGEWRRE--VAFAG----FEVP-----------IQMDVSAEKMIFGV--AGIDPQ 154
                      E  +A AG    F+ P           +++ +  +K +F      +  +
Sbjct: 69  ---------LPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAE 119

Query: 155 RRAELIKVLD-IDLSWRMHKV----SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 209
            +  + +VL+ I L+    ++    S GQ++ ++I M L++  K+LLLDE    +     
Sbjct: 120 EKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEET 179

Query: 210 ---ADLLRFLRKEC 220
              A+LL+ L  + 
Sbjct: 180 EKTAELLKSLAGKH 193

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 53/201 (26%), Positives = 81/201 (40%), Gaps = 43/201 (21%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEM-------VKVLGRS 102
           G  P + D  LTL +G+  +++G +G GKTT+L +I G   V  +          V G  
Sbjct: 12  GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG--FVPYQHGSITLDGKPVEGPG 69

Query: 103 A-----FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGID-PQRR 156
           A     F +  L            WR       F + +             AG++  QR 
Sbjct: 70  AERGVVFQNEGLLP----------WRNVQDNVAFGLQL-------------AGVEKMQRL 106

Query: 157 AELIKVLD-IDLSW----RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 211
               ++L  + L       + ++S GQR+RV I   L    ++LLLDE    LD   R  
Sbjct: 107 EIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ 166

Query: 212 LLRFLRKECEERGATIIYATH 232
           +   L K  +E G  ++  TH
Sbjct: 167 MQTLLLKLWQETGKQVLLITH 187

Length = 255

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 29/180 (16%)

Query: 70  LVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129
           L+G +G GK+T+L+++   + + P      G        +           E RR V   
Sbjct: 31  LIGPSGCGKSTLLRLLNRLNDLIPG-APDEGEVLLDGKDIYDLDVDVL---ELRRRVGMV 86

Query: 130 GFE--VPIQMDVSAEKMIFG--VAGIDPQRRAELI--KVLDIDLSWR-------MHKVSD 176
            F+   P    +  + + +G  + GI  +   +    + L     W           +S 
Sbjct: 87  -FQKPNPFPGSI-YDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSG 144

Query: 177 GQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARA---DLLRFLRKECEERGATIIYATH 232
           GQ++R+ +   L  +P +VLLLDE T  LD ++ A   +L+  L+KE      TI+  TH
Sbjct: 145 GQQQRLCLARALANEP-EVLLLDEPTSALDPISTAKIEELIAELKKE-----YTIVIVTH 198

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 13/189 (6%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G+  +++D +L + AG+   L+G +G GKTT+L+ I G   V+     + GR A  D  L
Sbjct: 16  GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG--FVKAA--GLTGRIAIADRDL 71

Query: 110 TSSGDLSY-LGGEWRREVAFAGFEV--PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI- 165
           T +      L   ++    F   +V   +   + A+KM    A I  +R A+ +K++ + 
Sbjct: 72  THAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM--PKADIA-ERVADALKLVGLG 128

Query: 166 DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-R 223
           D +  +  ++S G ++R+ I   +     VLLLDE    LD   RA++   +    EE  
Sbjct: 129 DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELP 188

Query: 224 GATIIYATH 232
             TI+  TH
Sbjct: 189 ELTILCVTH 197

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 41/219 (18%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILK-------------IIGGKHMV---EPEMVKV 98
           +N+ +L + AG    ++G++GAGK+T+++             I+ G+ +      E+ K 
Sbjct: 21  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80

Query: 99  ---LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 155
              +G    H   L+S            R V F    +P+++D + +  I        ++
Sbjct: 81  RRQIGMIFQHFNLLSS------------RTV-FGNVALPLELDNTPKDEI-------KRK 120

Query: 156 RAELIKVLDIDLSWRMH--KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 213
             EL+ ++ +      +   +S GQ++RV I   L    KVLL DE T  LD      +L
Sbjct: 121 VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL 180

Query: 214 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
             L++     G TI+  TH  D ++     +  +++G+L
Sbjct: 181 ELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 5/97 (5%)

Query: 174 VSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT 231
           +S GQ+RRV I  G++  +P K+L+LDE T  LD   R ++L  +++  +E   TII  +
Sbjct: 145 LSGGQKRRVAIA-GVVAMEP-KILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202

Query: 232 HIFDGLENWPSHIVYVAHGKLQLAMPMDKV-KEASKL 267
           H  + +      I+ +  GK +L     +V KE   L
Sbjct: 203 HSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETL 239

Length = 287

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 10/224 (4%)

Query: 9   PFHKTEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRC 68
           P  +  + +   +   + S  ++E+  +       +G       P+     L +  GD  
Sbjct: 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPI----DLRIAQGDIV 371

Query: 69  LLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF 128
            +VG NG GK+T+ K+  G ++ +   + + G +   D+        S +  ++      
Sbjct: 372 FIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDL 431

Query: 129 AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL 188
            G +      +   +       I     A+ +K+ D   S     +S GQ++R+ +    
Sbjct: 432 IGPDEGEHASLDNAQQYLQRLEI-----ADKVKIEDGGFSTTT-ALSTGQQKRLALICAW 485

Query: 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           L+   +LL DE   D D   +      L  + + +G TII  +H
Sbjct: 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH 529

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 41/203 (20%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
           P++ + +L++  G+   L+G +G GK+T+ +++ G  + +P    V  R           
Sbjct: 25  PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG--LEKPAQGTVSFRGQ--------- 73

Query: 113 GDLSYLGGEWRREVAFAGFEVPIQM-------DVSAEKMIFGVAG--------IDPQRR- 156
            DL  L  + RR      F   +Q+        V+    +  + G        +D   + 
Sbjct: 74  -DLYQLDRKQRR-----AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQK 127

Query: 157 ---AELIKVLDI---DLSWRMHKVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLAR 209
              AEL+ ++ +   D      ++S GQ +R+ I   L +KP K+++LDE   +LD++ +
Sbjct: 128 ARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKP-KLIVLDEAVSNLDMVLQ 186

Query: 210 ADLLRFLRKECEERGATIIYATH 232
           A +L  LRK  +  G   ++ TH
Sbjct: 187 AVILELLRKLQQAFGTAYLFITH 209

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 131 FEVPIQMDVSAEKMIFGVAGIDPQRRA-ELIKVLDIDLSWRMH---KVSDGQRRRVQICM 186
           FE  I+ D+    +  GV+  + ++RA + I+++ +D S+      ++S GQ+RRV +  
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAG 178

Query: 187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 246
            L      L+ DE T  LD     ++L        ++G TII  TH  D +  W    ++
Sbjct: 179 ILAMEPDFLVFDEPTAGLDPQGVKEILEIF-DNLNKQGKTIILVTHDLDNVLEWTKRTIF 237

Query: 247 VAHGKL 252
              GK+
Sbjct: 238 FKDGKI 243

Length = 305

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 60/240 (25%), Positives = 94/240 (39%), Gaps = 76/240 (31%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
           S P +  + +  T+PG+           ++D +    AG    L+G NGAGK+T+LKI+ 
Sbjct: 1   SSPYLSFDGIGKTFPGVKA---------LDDISFDCRAGQVHALMGENGAGKSTLLKILS 51

Query: 87  GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF--------AGFEVPIQ-- 136
           G +                      +G +  + G+   E+ F        AG  +  Q  
Sbjct: 52  GNY-------------------QPDAGSIL-IDGQ---EMRFASTTAALAAGVAIIYQEL 88

Query: 137 -----MDVSAEKMIFGVAGIDPQR-----RAELIKV---------LDIDLSWRMHKVSDG 177
                M V AE +  G     P +     R  L            +DID    +  +S G
Sbjct: 89  HLVPEMTV-AENLYLGQL---PHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIG 144

Query: 178 QRRRVQICMGLLKPFKVLLLDEITVDL-----DVLARADLLRFLRKECEERGATIIYATH 232
           QR+ V+I   L +  +V+  DE T  L     + L R  ++R LR E    G  I+Y +H
Sbjct: 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFR--VIRELRAE----GRVILYVSH 198

Length = 501

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 50.2 bits (121), Expect = 8e-07
 Identities = 59/259 (22%), Positives = 93/259 (35%), Gaps = 72/259 (27%)

Query: 26  NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
            S   V I A        DG    G  PL      TL AG R  LVG +GAGKT++L  +
Sbjct: 343 ASNDPVTIEAEDLEILSPDGKTLAG--PL----NFTLPAGQRIALVGPSGAGKTSLLNAL 396

Query: 86  GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLG--------------GEWRREVAFAG- 130
                                      G L Y G                WR+ +++ G 
Sbjct: 397 --------------------------LGFLPYQGSLKINGIELRELDPESWRKHLSWVGQ 430

Query: 131 ----FEVPIQMDVSAEKMIFGVAGIDPQR------RA-------ELIKVLDIDLSWRMHK 173
                   ++     + ++ G      ++       A        L + LD  +  +   
Sbjct: 431 NPQLPHGTLR-----DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485

Query: 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 233
           +S GQ +R+ +   LL+P ++LLLDE T  LD  +   +++ L      R  T +  TH 
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA--ASRRQTTLMVTHQ 543

Query: 234 FDGLENWPSHIVYVAHGKL 252
            + L  W   I  +  G++
Sbjct: 544 LEDLAQW-DQIWVMQDGQI 561

Length = 588

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 31/184 (16%)

Query: 57  DFTLTLNAGDRCL-----LVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
           DF L +  G+        ++G NG GKTT +K++ G  +++P+                 
Sbjct: 354 DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAG--VIKPDEGSEEDL---------- 401

Query: 112 SGDLSYLGGEWRREVAFAGFEVPIQMDV-SAEKMIFGVAGIDPQRRAELIKVLDID--LS 168
              +SY     + +     ++  ++  + SA +  FG        + E++K L+++  L 
Sbjct: 402 --KVSY-----KPQYISPDYDGTVEDLLRSAIRSAFG----SSYFKTEIVKPLNLEDLLE 450

Query: 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 228
             + ++S G+ +RV I   L +   + LLDE +  LDV  R  + + +R+  E    T +
Sbjct: 451 RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTAL 510

Query: 229 YATH 232
              H
Sbjct: 511 VVDH 514

Length = 591

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 50/230 (21%), Positives = 97/230 (42%), Gaps = 23/230 (10%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII----- 85
           +E   + F+YP     P     P++   T TL+ G+   LVG +G+GK+T+  ++     
Sbjct: 479 IEFQDVSFSYPN---RP---DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ 532

Query: 86  --GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK 143
             GG+ +++   +        H        +     G  R  +A+   + P +  ++A K
Sbjct: 533 PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAK 592

Query: 144 MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 203
                  I      E     D ++  +  ++S GQ++R+ I   L++  +VL+LDE T  
Sbjct: 593 AANAHDFI-----MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSA 647

Query: 204 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
           LD    A+  + L++       T++   H    +E     I+ +  G + 
Sbjct: 648 LD----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVV 692

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 34/260 (13%)

Query: 49  PGSTPL----INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104
           PG TP+    +++ +  L  G    LVG  G+GK+T+++            + + G   +
Sbjct: 14  PG-TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAG---Y 69

Query: 105 HDTALTSSGDLSYLGGEWRREVAFAG-------FEVPIQMDVSAEKMIFGVAGIDPQRRA 157
           H T  T + +L  L    R++V+          FE  +  DV      FG +  + + +A
Sbjct: 70  HITPETGNKNLKKL----RKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKA 125

Query: 158 -ELIKVLDIDLSWRMH---KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 213
            + +K + +          ++S GQ RRV I   +    ++L LDE    LD   R +++
Sbjct: 126 LKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMM 185

Query: 214 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTV 273
           + L K+ ++ G T+I  TH  D +  +   ++ + HGKL        +K AS   +    
Sbjct: 186 Q-LFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL--------IKHASPKEIFSDK 236

Query: 274 ESWLRKER-DEERKRRRERK 292
           E WL+K   DE    R   K
Sbjct: 237 E-WLKKHYLDEPATSRFASK 255

Length = 287

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 37/217 (17%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E   + F+YP  +        P +++ +LT+ AG++  ++G  G+GK+T+LK++ G  +
Sbjct: 3   IEFRNVSFSYPNQE-------IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG--L 53

Query: 91  VEPEMVKVLGRSAFHDTALTS------SGDLSYLG-------GEWRREVAFAGFEVPIQM 137
            +P    VL       T +          ++ Y+        G  R  +         + 
Sbjct: 54  YKPTSGSVL----LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDER 109

Query: 138 DVSAEKMIFGVAGIDP--QRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVL 195
            + A ++    AG+     +       LD+ +  R   +S GQR+ V +   LL    +L
Sbjct: 110 ILRAAEL----AGVTDFVNKHP---NGLDLQIGERGRGLSGGQRQAVALARALLNDPPIL 162

Query: 196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           LLDE T  +D+ +   L   LR+   ++  T+I  TH
Sbjct: 163 LLDEPTSAMDMNSEERLKERLRQLLGDK--TLIIITH 197

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 35/239 (14%)

Query: 15  EEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPL--INDFTLTLNAGDRCLLVG 72
           E       + E++   +E+  L+  +P   G        L  ++  +LTL  G    LVG
Sbjct: 261 EPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVG 320

Query: 73  SNGAGKTTI-LKIIGGKHMVEPEMVKVLGRSAFHDTALT--SSGDLSYLGGEWRREVAFA 129
            +G+GK+T+ L ++    ++  +     G   F    +   S  ++  L    RR +   
Sbjct: 321 ESGSGKSTLGLALLR---LIPSQ-----GEIRFDGQDIDGLSRKEMRPL----RRRMQVV 368

Query: 130 GFEVPI-----QMDVS---AEKM-IFGVAGIDPQRRAELIKV-----LDIDLSWRM-HKV 174
            F+ P      +M V     E + +        +R   +I+      LD     R  H+ 
Sbjct: 369 -FQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF 427

Query: 175 SDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           S GQR+R+ I   L LKP +++LLDE T  LD   +A +L  LR   ++ G + ++ +H
Sbjct: 428 SGGQRQRIAIARALILKP-ELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485

Length = 534

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 41/192 (21%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +ND + +++ G+  +L+G NGAGKTT++ +I GK    P+  +VL    F         D
Sbjct: 21  LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK--TRPQEGEVL----FDGDT-----D 69

Query: 115 LSYLGGEWRREVAFAG----FEVP-----------IQMDVSAEKMIFGVAG----IDPQR 155
           L+ L       +A AG    F+ P           +++ ++ +K +F         + +R
Sbjct: 70  LTKLP---EHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERR 126

Query: 156 RAELIKVLDIDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITV---DLDVLA 208
           R + +    I L     +    +S GQ++ ++I M L +  K+LLLDE      D +   
Sbjct: 127 RIDELLAT-IGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK 185

Query: 209 RADLLRFLRKEC 220
            A+LL+ L  + 
Sbjct: 186 TAELLKSLAGKH 197

Length = 249

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 21/229 (9%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII----- 85
           V+   + F YP     P    T ++ D + TL+ G+   LVG +G+GK+T++ ++     
Sbjct: 12  VKFQNVTFAYPT---RP---DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65

Query: 86  --GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK 143
             GG+ +++ + +        H        +        +  +A+       +    A +
Sbjct: 66  PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125

Query: 144 MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 203
                + I     +EL    D ++  +  ++S GQ++RV I   L++  +VL+LDE T  
Sbjct: 126 KAHAHSFI-----SELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180

Query: 204 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           LD  +   + + L    E R  T++   H    +E     I+ +  G++
Sbjct: 181 LDAESEQQVQQALYDWPERR--TVLVIAHRLSTVER-ADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 50/232 (21%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           M N    +E+  L F Y              +ND +  +  G+   ++G NG+GK+T ++
Sbjct: 1   MSNI---IEVKNLTFKYKEDQEKY------TLNDVSFHVKQGEWLSIIGHNGSGKSTTVR 51

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGE------W--RREVAFAGFEVPI 135
           +I G  ++E E                 SG +   G        W  R ++    F+ P 
Sbjct: 52  LIDG--LLEAE-----------------SGQIIIDGDLLTEENVWDIRHKIGMV-FQNPD 91

Query: 136 QMDVSA---EKMIFGV--AGIDPQRRAELIK-VLDI----DLSWRM-HKVSDGQRRRVQI 184
              V A   + + FG+   GI  +   E +   L++    D   R   ++S GQ++RV I
Sbjct: 92  NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAI 151

Query: 185 CMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 235
              + ++P K+++LDE T  LD   R +L++ ++   ++   T+I  TH  D
Sbjct: 152 AGAVAMRP-KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202

Length = 279

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 57/234 (24%)

Query: 48  PPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLG-RSAFHD 106
             G    ++  ++TLN G+   LVG +G+GK+ I K I G   V  +  +V   R  F D
Sbjct: 16  SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICG---VNKDNWRVTADRMRFDD 72

Query: 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAGIDPQRRAELIKVLD 164
                  DL  L    RR++        +  +VS   MIF    + +DP  R     + +
Sbjct: 73  I------DLLRLSPRERRKL--------VGHNVS---MIFQEPQSCLDPSERVGRQLIQN 115

Query: 165 ID-----------LSWR-------MHKV----------------SDGQRRRVQICMGLLK 190
           I              WR       +H+V                ++G+ ++V I + L  
Sbjct: 116 IPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALAN 175

Query: 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI 244
             ++L+ DE T  ++   +A + R L +  +    TI+  +H    +  W   I
Sbjct: 176 QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI 229

Length = 330

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 38/203 (18%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   ++    L +  G+   +VG +G+GK+T+L ++ G        V++LG+        
Sbjct: 21  GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQ-------- 72

Query: 110 TSSGDLSYLGGEWR-----REVA--FAGFEVPIQMD----VSAEKMIFGVAGIDPQRRA- 157
                L  L  + R     R V   F  F +   +     V+    + G +  D +  A 
Sbjct: 73  ----PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAK 128

Query: 158 -ELIKVLDIDLSWRM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL---AR 209
             L  V    L  R+     ++S G+++RV +         VL  DE T +LD       
Sbjct: 129 ALLEAV---GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185

Query: 210 ADLLRFLRKECEERGATIIYATH 232
           ADLL  L +   ERG T++  TH
Sbjct: 186 ADLLFALNR---ERGTTLVLVTH 205

Length = 228

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 58/213 (27%), Positives = 90/213 (42%), Gaps = 64/213 (30%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   L++D +LTL  G+   ++G NGAGK+T+L+ + G+  + P                
Sbjct: 13  GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE--LSP---------------- 54

Query: 110 TSSGDLSYLG---GEW-------RREV-------AFAGF---EVPIQMDVSAEKMIFGVA 149
             SG++   G    +W       RR V       +F  F   EV + M         G A
Sbjct: 55  -DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP-FTVEEV-VAM---------GRA 102

Query: 150 --GIDPQRRAELI-KVLDI----DLSWR-MHKVSDGQRRRVQICMGLL------KPFKVL 195
             G+       L+   L       L+ R   ++S G+++RVQ+   L        P + L
Sbjct: 103 PHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162

Query: 196 LLDEITVDLDVLARADLLRFLRKECEERGATII 228
           LLDE T  LD+  +  +LR  R+   ERG  +I
Sbjct: 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVI 195

Length = 258

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 21/187 (11%)

Query: 52  TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
            P+       ++AG+  L+ G NGAGKTT+L+++ G   VE   +++ G++A        
Sbjct: 24  EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR------ 77

Query: 112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIF--GVAGIDPQR---RAELIKVLDI 165
                   G+  R +A+ G    ++ D+S  E + F  G+ G   ++    A  I  L  
Sbjct: 78  --------GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG 129

Query: 166 DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 225
                + ++S GQ++R+ +    L P  + LLDE   +LD+     + R +       GA
Sbjct: 130 YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA 189

Query: 226 TIIYATH 232
            ++  TH
Sbjct: 190 ALV-TTH 195

Length = 214

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
          + D +  +  G+R  ++G NGAGK+T+LK+I G
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75

Length = 249

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 234
           S G++ R+ +   LL+   +LLLDE T  LD+ +   L   L+   E  G T+I  +H  
Sbjct: 72  SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK---EYPG-TVILVSHDR 127

Query: 235 DGLENWPSHIVYVAHGK 251
             L+   + I+ +  GK
Sbjct: 128 YFLDQVATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 36/179 (20%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
            ++    LT+  G+   ++G NG+GK+T+ K I G    E              T L   
Sbjct: 14  EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE----------VTSGTILFKG 63

Query: 113 GDLSYLGGEWR-REVAFAGFEVPIQM-DVSAEKMIFGVAGIDPQRRA------------- 157
            DL  L  + R R   F  F+ P ++  VS     F  + ++ +R A             
Sbjct: 64  QDLLELEPDERARAGLFLAFQYPEEIPGVSNL--EFLRSALNARRSARGEEPLDLLDFLK 121

Query: 158 ---ELIKVLDIDLSWRMHKV----SDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLA 208
                + +L +D  +    V    S G+++R +I  M LL+P K+ +LDEI   LD+ A
Sbjct: 122 LLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEP-KLAILDEIDSGLDIDA 179

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 21/131 (16%)

Query: 79  TTILKIIGGKHMVEPEM--VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ 136
           +T+LK+I G  +++P    + + G      ++              R+ +     +  + 
Sbjct: 1   STLLKLITG--LLQPTSGTILLDGEDGTGLSSRKL----------LRKRIGVVFQDPQLF 48

Query: 137 MDVSAEKMIFGVAGIDPQRRAELIKVL------DIDLSWRMHKVSDGQRRRVQICMGLLK 190
            +++  + +F     D +  A   + L      D      +  +S GQ++RV I   LLK
Sbjct: 49  PELTVRENLF-FGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLK 107

Query: 191 PFKVLLLDEIT 201
             K+LLLDE T
Sbjct: 108 KPKLLLLDEPT 118

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
           P S  ++++  L +  G+   +VG +G+GK+T+ K++  + +  P+  +VL      D A
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLL--QRLYTPQHGQVLVDG--VDLA 522

Query: 109 LTSSGDLS-----------YLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRA 157
           +     L                  R  +A      P +  + A K+      I    + 
Sbjct: 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQG 582

Query: 158 ELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 217
                 + ++  +   +S GQR+R+ I   L+   ++L+ DE T  LD  + A ++R +R
Sbjct: 583 -----YNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMR 637

Query: 218 KECEERGATIIYATH 232
           + C  RG T+I   H
Sbjct: 638 EIC--RGRTVIIIAH 650

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 36/224 (16%)

Query: 28  KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
           KP ++++ L  +Y G  G           D +  L  G+   +VG +G+GK+T+L  + G
Sbjct: 1   KPLLQVSGLSKSYGGGKG---------CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAG 51

Query: 88  KHMVEPEMVKVLGRS-AFHDTALTSSGDLSYLG-GEWRREVAFAGF--EVP---IQMDVS 140
           +   +      + RS A  +    S  +   L   EW       GF  + P   ++M VS
Sbjct: 52  RLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW-------GFVHQNPRDGLRMRVS 104

Query: 141 A-----EK-MIFGVAGIDPQRRA--ELIKVLDIDLSWRM----HKVSDGQRRRVQICMGL 188
           A     E+ M  G       R    + ++ ++ID + R+       S G ++R+QI   L
Sbjct: 105 AGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPT-RIDDLPRAFSGGMQQRLQIARNL 163

Query: 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           +   +++ +DE T  LDV  +A LL  LR    + G  +I  TH
Sbjct: 164 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 40/203 (19%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   ++    LT+  G+  +++G +G+GK+T+L+ I    + EP+     G        L
Sbjct: 11  GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL--LEEPDS----GTIIIDGLKL 64

Query: 110 TSSGDLSYLGGEWRREVA--FAGFEVPIQMDV-----SAEKMIFGVAGIDPQRRAE--LI 160
           T          E R++V   F  F +   + V      A   + G++  + + RA   L 
Sbjct: 65  TDDKKNIN---ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLE 121

Query: 161 KVLDIDLSWRMHK----VSDGQRRRVQICMGL-LKPFKVLLLDEITVDLD------VLAR 209
           KV    L+ +       +S GQ++RV I   L + P KV+L DE T  LD      VL  
Sbjct: 122 KV---GLADKADAYPAQLSGGQQQRVAIARALAMNP-KVMLFDEPTSALDPELVGEVL-- 175

Query: 210 ADLLRFLRKECEERGATIIYATH 232
            D+++ L +E    G T++  TH
Sbjct: 176 -DVMKDLAEE----GMTMVVVTH 193

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 47.0 bits (113), Expect = 3e-06
 Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 47/201 (23%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G + ++   +LT+  G+   L+G NGAGKTT+LK I G       ++             
Sbjct: 11  GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG-------LLPP----------- 52

Query: 110 TSSGDLSYLGGEWRR----EVAFAGFEVPIQMDVSAEKMIF------------GVAGIDP 153
             SG + + G +       E A AG    I   V   + IF              A    
Sbjct: 53  -RSGSIRFDGRDITGLPPHERARAG----IGY-VPEGRRIFPELTVEENLLLGAYARRRA 106

Query: 154 QRRAELIKVLDI--DLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL 207
           +R+A L +V ++   L  R  +    +S G+++ + I   L+   K+LLLDE +  L   
Sbjct: 107 KRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166

Query: 208 ARADLLRFLRKECEERGATII 228
              ++   +R+  +E G TI+
Sbjct: 167 IVEEIFEAIRELRDE-GVTIL 186

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 23/193 (11%)

Query: 54  LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
           L+ D  L+L  G+   LVG +G+GK+     I G  ++ P + +  G        L    
Sbjct: 1   LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILG--LLPPGLTQTSGEILLDGRPLLPL- 57

Query: 114 DLSYLGGEWRREVAF------AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID- 166
             S  G    R +A         F     M   A + +  +  +  Q RA +++ L+   
Sbjct: 58  --SIRG----RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVG 111

Query: 167 -------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 219
                  L     ++S G  +RV I + LL     L+ DE T DLDV+ +A +L+ LR+ 
Sbjct: 112 LPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171

Query: 220 CEERGATIIYATH 232
            +  G  I+  TH
Sbjct: 172 RQLFGTGILLITH 184

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 32/221 (14%)

Query: 26  NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
            + P + +  +  ++  +           +    LT+  G+   L+G NGAGK+T++K++
Sbjct: 1   MATPYISMAGIGKSFGPVHA---------LKSVNLTVYPGEIHALLGENGAGKSTLMKVL 51

Query: 86  GGKHMVEPEMVKVLGRSAFH-DTALTSSGDLSYLGGEWR-------REVAFAGFEVPIQM 137
            G H      + +   +    D  L +   +  +  E          E  + G       
Sbjct: 52  SGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIG-RHLT-- 108

Query: 138 DVSAEKMIFGVAGID----PQRRAELIKVLDI--DLSWRMHKVSDGQRRRVQICMGLLKP 191
                K + GV  ID      R A ++  + +  DL  ++  +S   ++ ++I   L+  
Sbjct: 109 -----KKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163

Query: 192 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
            KV+++DE T  L      D L  +  +  + G  I+Y +H
Sbjct: 164 AKVIIMDEPTSSL-TNKEVDYLFLIMNQLRKEGTAIVYISH 203

Length = 510

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 31/238 (13%)

Query: 16  EEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNG 75
            E  K   +E  +P +++  +   Y  +D     G    +++ +L +  G+   +VG++G
Sbjct: 265 SEVEKECEVEVGEPIIKVRNVSKRYISVD----RGVVKAVDNVSLEVKEGEIFGIVGTSG 320

Query: 76  AGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLS------YLGGEWRREVAFA 129
           AGKTT+ KII G  ++EP   +V  R       +T  G         Y+G   +    + 
Sbjct: 321 AGKTTLSKIIAG--VLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYP 378

Query: 130 ------------GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDG 177
                       G E+P ++      +   + G D ++  E++            ++S+G
Sbjct: 379 HRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYP-------DELSEG 431

Query: 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 235
           +R RV +   L+K  ++++LDE T  +D + + D+   + K  EE   T I  +H  D
Sbjct: 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD 489

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 22/172 (12%)

Query: 70  LVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRR-EVAF 128
           L+G +G GKTT+L+++ G    +P+   ++              D++ +    R   + F
Sbjct: 1   LLGPSGCGKTTLLRLLAG--FEQPDSGSIM----------LDGEDVTNVPPHLRHINMVF 48

Query: 129 AGFEVPIQMDVSAEKMIFGV-------AGIDPQRRAELIKV-LDIDLSWRMHKVSDGQRR 180
             + +   M V  E + FG+       A I P+    L  V L+     + H++S GQ++
Sbjct: 49  QSYALFPHMTV-EENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQ 107

Query: 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           RV +   L+   K+LLLDE    LD   R  +   L+   E+ G T ++ TH
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 60/231 (25%), Positives = 94/231 (40%), Gaps = 37/231 (16%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   ++N  + T+ +G+   L+G NGAGK+TI ++I G  M  P                
Sbjct: 52  GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG--MTSP---------------- 93

Query: 110 TSSGDLSYLGGE--WRREVAFAGFEVPIQMD-------VSAEKMIFGVAGIDPQRRAELI 160
             +G ++ LG     R  +A A   V  Q D       V    ++FG       R  E +
Sbjct: 94  -DAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV 152

Query: 161 -------KVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 213
                    L+     R+  +S G +RR+ +   L+   ++L+LDE T  LD  AR  + 
Sbjct: 153 IPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 212

Query: 214 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG-KLQLAMPMDKVKE 263
             LR     RG TI+  TH  +  E     +  +  G K+    P   + E
Sbjct: 213 ERLR-SLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262

Length = 340

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 35/208 (16%)

Query: 43  IDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102
           +   PP G  P +   + +L AG+   ++G +G+GK+T+ ++I G        V++    
Sbjct: 322 VTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL---- 377

Query: 103 AFHDTALTSSGDLSYLG---GEWRREVA-FAG--------FEVPIQMDVSAEKMIFG--V 148
              D A     D    G   G   ++V  F G        F      +   EK+I    +
Sbjct: 378 ---DGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG----ENADPEKIIEAAKL 430

Query: 149 AGIDPQRRAELIKVL----DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL 204
           AG+      ELI  L    D  +      +S GQR+R+ +   L    K+++LDE   +L
Sbjct: 431 AGVH-----ELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNL 485

Query: 205 DVLARADLLRFLRKECEERGATIIYATH 232
           D      L   + K  + RG T++  TH
Sbjct: 486 DEEGEQALANAI-KALKARGITVVVITH 512

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 47.4 bits (114), Expect = 7e-06
 Identities = 62/217 (28%), Positives = 88/217 (40%), Gaps = 64/217 (29%)

Query: 54  LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP--------EMVKVL----GR 101
           LI+D + +L  G    ++G NGAGK+T+ K+I G+   +P        E VK+      R
Sbjct: 339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE--QPDSGTIKIGETVKLAYVDQSR 396

Query: 102 SAFHDTA----LTSSG-DLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR 156
            A           S G D+  +G            E+P +  V      F   G D Q++
Sbjct: 397 DALDPNKTVWEEISGGLDIIKVGN----------REIPSRAYVGR----FNFKGGDQQKK 442

Query: 157 AELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
              + VL           S G+R R+ +   L +   VLLLDE T DLDV    + LR L
Sbjct: 443 ---VGVL-----------SGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV----ETLRAL 484

Query: 217 RKECEERG--ATII---------YATHI--FDGLENW 240
            +   E    A +I          ATHI  F+G    
Sbjct: 485 EEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQV 521

Length = 556

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 49/203 (24%), Positives = 88/203 (43%), Gaps = 24/203 (11%)

Query: 39  TYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV 98
           T+  +     P    ++++ +L +  G+   +VG +G+GK+T+ K+I   ++ E   V V
Sbjct: 2   TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV 61

Query: 99  LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAE 158
            G    HD AL    D ++L    RR+V     E  +      + +     G+  +R  E
Sbjct: 62  DG----HDLALA---DPAWL----RRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIE 110

Query: 159 LIKV-------------LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 205
             K+              D  +  +   +S GQR+R+ I   L+   ++L+ DE T  LD
Sbjct: 111 AAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD 170

Query: 206 VLARADLLRFLRKECEERGATII 228
             +   ++R +   C  R   II
Sbjct: 171 YESEHAIMRNMHDICAGRTVIII 193

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 36/218 (16%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   ++ND + T+  G+   L+G NGAGK+TI +++ G  M+ P                
Sbjct: 15  GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG--MISP---------------- 56

Query: 110 TSSGDLSYLGGE--WRREVAFAGFEVPIQMD-------VSAEKMIFG-VAGIDPQRRAEL 159
              G ++ LG     R  +A     V  Q D       V    ++FG   G+  +    +
Sbjct: 57  -DRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV 115

Query: 160 IKVL------DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 213
           I  L      +     R+  +S G +RR+ +   L+   ++L+LDE T  LD  AR  + 
Sbjct: 116 IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175

Query: 214 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
             LR     RG TI+  TH  +  E     +  +  G+
Sbjct: 176 ERLR-SLLARGKTILLTTHFMEEAERLCDRLCVLESGR 212

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 24/199 (12%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL--GRSAFHDT 107
           G T  +ND +L +  G+  +++G +G+GK+T+L+ I    ++EP   KVL  G+    D 
Sbjct: 35  GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINR--LIEPTSGKVLIDGQ----DI 88

Query: 108 ALTSSGDLSYLGGEWRRE---VAFAGFEVPIQMDVSAEKMIFG--VAGIDPQ-RRAELIK 161
           A  S  +L  L    RR+   + F  F +     V  E + FG  V G+    R     +
Sbjct: 89  AAMSRKELREL----RRKKISMVFQSFALLPHRTV-LENVAFGLEVQGVPRAEREERAAE 143

Query: 162 VLD-IDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
            L+ + L    HK    +S G ++RV +   L     +LL+DE    LD L R ++   L
Sbjct: 144 ALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDEL 203

Query: 217 RKECEERGATIIYATHIFD 235
            +   E   TI++ TH  D
Sbjct: 204 LRLQAELQKTIVFITHDLD 222

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 47.1 bits (113), Expect = 9e-06
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 25  ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
              + ++ +N + FTYP           P++   +L + AG++  L+G  G GK+T+L++
Sbjct: 333 AADQVSLTLNNVSFTYPD-------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385

Query: 85  I 85
           +
Sbjct: 386 L 386

Length = 574

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 43/207 (20%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL--GRSAFHDT 107
           G   ++    LT+  G+   ++G NG+GK+T+   I G    E    ++L  G       
Sbjct: 15  GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE------ 68

Query: 108 ALTSSGDLSYLGGEWR-REVAFAGFEVPIQMD-VSAEKMIFGVAGIDPQRRA-------- 157
                 D+  L  + R R   F  F+ P+++  V+     F  A ++ +R A        
Sbjct: 69  ------DILELSPDERARAGIFLAFQYPVEIPGVTN--SDFLRAAMNARRGARGILPEFI 120

Query: 158 ----ELIKVLDIDLSWRMHKV----SDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLA 208
               E  ++L +D  +    V    S G+++R +I  + LL+P K+ +LDE    LD+ A
Sbjct: 121 KELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP-KLAILDEPDSGLDIDA 179

Query: 209 R---ADLLRFLRKECEERGATIIYATH 232
               A+ +  LR+  E RG  II  TH
Sbjct: 180 LKIVAEGINALRE--EGRGVLII--TH 202

Length = 251

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 48 PPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
           P    L+ D +  +  GDR L+ G +G GK+++ + + G
Sbjct: 10 TPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 27/191 (14%)

Query: 56  NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEM--VKVLGRSAFHDTALTSSG 113
           +D +L++  G+   L+G NGAGK+T++KI+ G  + +P+   ++V G+       + S  
Sbjct: 21  DDVSLSVKKGEIHALLGENGAGKSTLMKILFG--LYQPDSGEIRVDGKE----VRIKSPR 74

Query: 114 DLSYLG-GEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-----IDPQRRAELIKV----- 162
           D   LG G     +    F +   + V AE +I G+       ID ++    IK      
Sbjct: 75  DAIRLGIG-----MVHQHFMLVPTLTV-AENIILGLEPSKGGLIDRRQARARIKELSERY 128

Query: 163 -LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 221
            L +D   ++  +S G+++RV+I   L +  ++L+LDE T  L      +L   LR+   
Sbjct: 129 GLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA 188

Query: 222 ERGATIIYATH 232
           E G TII+ TH
Sbjct: 189 E-GKTIIFITH 198

Length = 501

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 173 KVSDGQRRRVQICMGLL---KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 229
            +SDG +R + + + LL       +LL+DE    L       L+  L KE  E+GA +I+
Sbjct: 189 GISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELL-KELSEKGAQLIF 247

Query: 230 ATH 232
            TH
Sbjct: 248 TTH 250

Length = 256

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 50/229 (21%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-------------GKHMVEPEMV 96
           G   +  + T+ +  G    ++G NG GK+T+L+ +              G+H+      
Sbjct: 18  GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77

Query: 97  KVLGRSAFHDTALTSSGDLSY-------------LGGEWRREVAFAGFEVPIQMDVSAEK 143
           +V  R        T+ GD++              L   WR+E   A         V+   
Sbjct: 78  EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEA---------VTKAM 128

Query: 144 MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 203
              G+  +  Q                +  +S GQR+R  I M L +   ++LLDE T  
Sbjct: 129 QATGITHLADQS---------------VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTW 173

Query: 204 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           LD+  + DLL  L +   E+G T+    H  +    + SH++ +  GK+
Sbjct: 174 LDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKI 222

Length = 265

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 50/198 (25%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E   + F YP     P      ++   +LT+  G    LVGS+G GK+T+         
Sbjct: 1   IEFKNVSFRYPSRPDVP------ILKGLSLTIPPGKTVALVGSSGCGKSTV--------- 45

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGE---------WRREVAFAGFEVPIQMDVS- 140
                V +L R  F+D    +SG++  L G           R ++     E P+  D + 
Sbjct: 46  -----VSLLER--FYDP---TSGEI-LLDGVDIRDLNLRWLRSQIGLVSQE-PVLFDGTI 93

Query: 141 AEKMIFGVAGIDPQRRAELIKVLDID---LSW----------RMHKVSDGQRRRVQICMG 187
           AE + +G      +   E  K  +I    +S           R  ++S GQ++R+ I   
Sbjct: 94  AENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARA 153

Query: 188 LLKPFKVLLLDEITVDLD 205
           LL+  K+LLLDE T  LD
Sbjct: 154 LLRNPKILLLDEATSALD 171

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 53/207 (25%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +N+ +L+L +G+   L+G +G GK+T+ +++ G  +  P      G  ++          
Sbjct: 28  LNNVSLSLKSGETVALLGRSGCGKSTLARLLVG--LESPSQ----GNVSWRGE------P 75

Query: 115 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF--GVAGIDPQ------------------ 154
           L+ L    R+  AF       + D+   +M+F   ++ ++P+                  
Sbjct: 76  LAKLNRAQRK--AF-------RRDI---QMVFQDSISAVNPRKTVREIIREPLRHLLSLD 123

Query: 155 ------RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 205
                 R +E+++ +D+D   L  R  ++S GQ +RV +   L    K+L+LDE   +LD
Sbjct: 124 KAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183

Query: 206 VLARADLLRFLRKECEERGATIIYATH 232
           ++ +A ++R L+K  ++ G   ++ TH
Sbjct: 184 LVLQAGVIRLLKKLQQQFGTACLFITH 210

Length = 268

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 22/194 (11%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
           P++    L  +      LVG+NG GK+T+   + G  ++ P+   VL +    D   +  
Sbjct: 15  PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG--LLRPQKGAVLWQGKPLD--YSKR 70

Query: 113 GDLSYLGGEWRREVAFAGFEVP--------IQMDVSAEKMIFGVAGIDPQRRAELIKVLD 164
           G L+      R++VA   F+ P        I  D++      GV   +  RR +    L 
Sbjct: 71  GLLAL-----RQQVATV-FQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLV 124

Query: 165 IDLSWRMHKV---SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 221
               +R   +   S GQ++RV I   L+   + LLLDE T  LD   R  ++  +R+   
Sbjct: 125 DAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184

Query: 222 ERGATIIYATHIFD 235
           + G  +I ++H  D
Sbjct: 185 Q-GNHVIISSHDID 197

Length = 271

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 24/194 (12%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           + D +L +  G+  +++G +G+GK+T+++++    ++EP   +VL      D A  S  +
Sbjct: 44  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLL--NRLIEPTRGQVLIDGV--DIAKISDAE 99

Query: 115 LSYLGGEWRRE---VAFAGFEVPIQMDVSAEKMIFG--VAGIDPQRRAELIKVLD----I 165
           L     E RR+   + F  F +   M V  +   FG  +AGI+ + R E  K LD    +
Sbjct: 100 LR----EVRRKKIAMVFQSFALMPHMTV-LDNTAFGMELAGINAEERRE--KALDALRQV 152

Query: 166 DLSWRMH----KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 221
            L    H    ++S G R+RV +   L     +LL+DE    LD L R ++   L K   
Sbjct: 153 GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212

Query: 222 ERGATIIYATHIFD 235
           +   TI++ +H  D
Sbjct: 213 KHQRTIVFISHDLD 226

Length = 400

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 41/244 (16%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    ++   L +  G+   L G NGAGK+T++KI+ G +   P                
Sbjct: 12  GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY---PHG-------------- 54

Query: 110 TSSGDLSYLGGEWR----REVAFAGF-----EVPIQMDVSAEKMIF--------GVAGID 152
           T  G++ + G   +    R+   AG      E+ +  ++S  + IF        G     
Sbjct: 55  TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAY 114

Query: 153 PQ---RRAELIKVLDIDLSWRMHKVSD---GQRRRVQICMGLLKPFKVLLLDEITVDLDV 206
                R   L++ L +D       V D   GQ++ V+I   L K  ++L+LDE +  L  
Sbjct: 115 NAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTE 174

Query: 207 LARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK 266
                LL  +R + +  G   +Y +H  + ++     I  +  G+      M  + E   
Sbjct: 175 KETEILLDIIR-DLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSEDDI 233

Query: 267 LSLM 270
           +++M
Sbjct: 234 ITMM 237

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 9/67 (13%)

Query: 21 MAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTT 80
               +  P VE+  +  ++             +I++  LT+N G+   L+G +G GKTT
Sbjct: 5  NKQPSSLSPLVELRGISKSF---------DGKEVISNLDLTINNGEFLTLLGPSGCGKTT 55

Query: 81 ILKIIGG 87
          +L++I G
Sbjct: 56 VLRLIAG 62

Length = 375

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 26/206 (12%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI-------IGGKHMVEPEM-VKVLG 100
           P    ++ D +L+   G +  ++G NGAGK+T+L+I         G+    P + V  L 
Sbjct: 15  PPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLP 74

Query: 101 RSAFHDTALTSSGDLSYLGGEWRR------EVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ 154
           +    D   T   ++     E +       E++    E    MD    +       ID  
Sbjct: 75  QEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAA 134

Query: 155 RRAELIKVLDI--------DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 206
              +L + L+I             + K+S G+RRRV +C  LL    +LLLDE T  LD 
Sbjct: 135 DAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA 194

Query: 207 LARADLLRFLRKECEERGATIIYATH 232
            + A L + L+    E   T++  TH
Sbjct: 195 ESVAWLEQHLQ----EYPGTVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 46.3 bits (111), Expect = 2e-05
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 29/184 (15%)

Query: 56  NDFTLTLNAGDRCL-----LVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110
            DF+L +  G+        +VG NG GKTT  K++ G   ++P+  +V       D  L 
Sbjct: 351 GDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV--LKPDEGEV-------DPELK 401

Query: 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LS 168
            S    Y+  +         ++  ++  + +     G        ++E+IK L ++  L 
Sbjct: 402 ISYKPQYIKPD---------YDGTVEDLLRSITDDLG----SSYYKSEIIKPLQLERLLD 448

Query: 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 228
             +  +S G+ +RV I   L +   + LLDE +  LDV  R  + + +R+  EER AT +
Sbjct: 449 KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATAL 508

Query: 229 YATH 232
              H
Sbjct: 509 VVDH 512

Length = 590

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 170 RM----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 225
           RM    H+ S G R+RV I M LL   K+L+ DE T  LDV  +A ++  L +   E   
Sbjct: 154 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT 213

Query: 226 TIIYATH 232
            II  TH
Sbjct: 214 AIIMITH 220

Length = 330

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 30/220 (13%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
           P  TP + +  L +  G+   ++G NG+GK+T+   + G  ++ P+  KVL         
Sbjct: 12  PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNG--LLRPQKGKVLVSG------ 63

Query: 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS---AEKMIFGVAG--IDPQRRAELIKVL 163
              +GD S L G   R++    F+ P    V     E + FG     + P    E+ K +
Sbjct: 64  -IDTGDFSKLQG--IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPP---IEIRKRV 117

Query: 164 DIDLS------WRMHK---VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 214
           D  L+      +R      +S GQ + V +   L    + L+ DE+T  LD  +   +L 
Sbjct: 118 DRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE 177

Query: 215 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254
            ++K   E+G TI+Y TH  + L +    I+ +  GK+ L
Sbjct: 178 RIKK-LHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVL 215

Length = 274

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
             PL+++  L +   +R  LVG NGAGK+T++KI+ G
Sbjct: 14 SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNG 51

Length = 635

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 30/198 (15%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
             +++  + +  G   ++VG  G GK+++L  I G      EM  + G+         S 
Sbjct: 15  ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILG------EMQTLEGK-VHWSNKNESE 67

Query: 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVL----DIDL- 167
                     R  VA+A  + P  ++ + E+ I   +  + QR   +        DIDL 
Sbjct: 68  PSFEATRSRNRYSVAYAA-QKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLL 126

Query: 168 --------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV-----LARADLLR 214
                     R   +S GQR+R+ +   L +   ++ LD+    LD+     L +  +L+
Sbjct: 127 PFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILK 186

Query: 215 FLRKECEERGATIIYATH 232
           FL+    +   T++  TH
Sbjct: 187 FLQ----DDKRTLVLVTH 200

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
           +E+  L   +            PL  +  L L AG+R  ++G NG GKTT+L+ + G
Sbjct: 320 LEVENLTKGFDN---------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367

Length = 530

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 34/202 (16%)

Query: 51  STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFHDT 107
               ++D  L +  G+  +++G NG+GK+TI      KHM   + P   KV         
Sbjct: 22  EKLALDDVNLEVKKGEFLVILGRNGSGKSTI-----AKHMNALLIPSEGKVY-------- 68

Query: 108 ALTSSGDLSYLGGEWR-REVAFAGFEVPIQMDVSA---EKMIFGVA--GIDPQ----RRA 157
                 D S     W  R  A   F+ P    V+    E + FG    GI P+    R  
Sbjct: 69  --VDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVD 126

Query: 158 ELIKVLDIDLSWRM--HKVSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLARADLL 213
           E +K + +    R   H +S GQ++RV I  G+L  +P + ++ DE T  LD   R +++
Sbjct: 127 ESLKKVGMYEYRRHAPHLLSGGQKQRVAIA-GILAMRP-ECIIFDEPTAMLDPSGRREVV 184

Query: 214 RFLRKECEERGATIIYATHIFD 235
             +++  ++ G TII  TH  +
Sbjct: 185 NTIKELNKKYGITIILITHYME 206

Length = 280

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 34/187 (18%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
               ++ND +L +N+G+   L+G NGAGKTT   +I G  +V P+  K+L      D  +
Sbjct: 15  KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG--LVRPDSGKIL----LDDEDI 68

Query: 110 TS--------SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK 161
           T          G + YL  E      F    V   +    E  I        +R+ EL  
Sbjct: 69  TKLPMHKRARLG-IGYLPQE---ASIFRKLTVEDNIMAVLE--IREKDLKKAERKEELDA 122

Query: 162 VLDIDLSWRMHKV--------SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD-- 211
           +L+    + +  +        S G+RRRV+I   L    K +LLDE    +D +A  D  
Sbjct: 123 LLE---EFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179

Query: 212 -LLRFLR 217
            +++ L+
Sbjct: 180 RIIKHLK 186

Length = 243

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 22/187 (11%)

Query: 54  LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
           ++ D ++    G    +VG +GAGK+T++K+I    +++P    +L      D     + 
Sbjct: 18  ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSIL-----IDGVDIKTI 70

Query: 114 DLSYLGGEWRREVAFAG-----FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLS 168
           D+  L    RR++         FE  ++ ++    M+ G   +D +     + ++ ++  
Sbjct: 71  DVIDL----RRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEY---YLSIVGLNKE 123

Query: 169 WRMHKVSD---GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA 225
           +    V +   G+ +RV I   L    +VLLLDE T  LD  +   +   + K   +   
Sbjct: 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL 183

Query: 226 TIIYATH 232
           T+I+ TH
Sbjct: 184 TVIWITH 190

Length = 241

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 22/193 (11%)

Query: 52  TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
           T ++   +L++  G+   +VGS+G+GK+T+L ++GG        V   G+S    + L S
Sbjct: 18  TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL---SKL-S 73

Query: 112 SGDLSYLGGEWRREVAFAGF---------EVPIQMDVSAEKMIFGVAGIDPQRRAE--LI 160
           S + + L     R     GF         +     +V+   +I   +  + + RA   L 
Sbjct: 74  SNERAKL-----RNKKL-GFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLE 127

Query: 161 KV-LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 219
           KV L+  ++ R  ++S G+R+RV I   L+    ++L DE T +LD      +   + + 
Sbjct: 128 KVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187

Query: 220 CEERGATIIYATH 232
             E   + +  TH
Sbjct: 188 NRELNTSFLVVTH 200

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 25/191 (13%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    +   +L +  G+   L+G NGAGKTT+LK I G  +V P      GR  F    +
Sbjct: 14  GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRS----GRIIFDGEDI 67

Query: 110 TS--SGDLSYLGGEWRREVAFA--GFEVPIQMDVSAEKMIFGVAGIDPQR--RAELIKVL 163
           T     + + LG      +A+   G  +  ++ V  E ++ G      +     +L +V 
Sbjct: 68  TGLPPHERARLG------IAYVPEGRRIFPRLTV-EENLLLGAYARRDKEAQERDLEEVY 120

Query: 164 DI--DLSWRMH----KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 217
           ++   L  R +     +S G+++ + I   L+   K+LLLDE +  L      ++   ++
Sbjct: 121 ELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK 180

Query: 218 KECEERGATII 228
           +  +E G TI+
Sbjct: 181 ELRKEGGMTIL 191

Length = 237

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 17/185 (9%)

Query: 59  TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYL 118
           + TL  G    ++G NG+GK+T+ K++ G  M+EP      G    +D  L   GD S+ 
Sbjct: 33  SFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTS----GEILINDHPL-HFGDYSFR 85

Query: 119 GGEWRR--EVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK-------VLDIDLSW 169
               R   +         +++    +  +     ++P++R + I        +L    ++
Sbjct: 86  SKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY 145

Query: 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY 229
             H ++ GQ++RV +   L+   K+++ DE    LD+  R+ L+  + +  E++G + IY
Sbjct: 146 YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205

Query: 230 AT-HI 233
            T HI
Sbjct: 206 VTQHI 210

Length = 267

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 24/220 (10%)

Query: 60  LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE---MVKVLGRSAFHDTALTSSGDLS 116
            TL+AG+   L+G NGAGK+T++KII G   + P     +++ G      T   +     
Sbjct: 32  FTLHAGEVHALLGGNGAGKSTLMKIIAG---IVPPDSGTLEIGGNPCARLTPAKAHQLGI 88

Query: 117 YLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRR-----AELIKVLDIDLSWR 170
           YL  +    + F    V        E ++FG+       ++     A L   LD+D S  
Sbjct: 89  YLVPQ--EPLLFPNLSV-------KENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAG 139

Query: 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 230
             +V+D  R+ V+I  GL++  ++L+LDE T  L       L   +R E   +G  I++ 
Sbjct: 140 SLEVAD--RQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR-ELLAQGVGIVFI 196

Query: 231 THIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLM 270
           +H    +      I  +  G + L+     +     +  +
Sbjct: 197 SHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQAI 236

Length = 510

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 26/185 (14%)

Query: 60  LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLG 119
           L+ + G+   L+G NGAGKTT+L+ I G        VKV G S            + Y+ 
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-----PGKGWRHIGYV- 54

Query: 120 GEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRR---AELIKVLDIDLSWRMHKVS 175
              R E A   ++ PI +   A  ++ G  G I   RR   A+   V D      + +++
Sbjct: 55  -PQRHEFA---WDFPISV---AHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELA 107

Query: 176 D--------GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 227
           D        GQR+RV +   L     VLLLDE    LD +   +LL  L  E    G  I
Sbjct: 108 DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD-MPTQELLTELFIELAGAGTAI 166

Query: 228 IYATH 232
           +  TH
Sbjct: 167 LMTTH 171

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 36/196 (18%)

Query: 54  LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
           L+ +   T+  G+   L+G +G GK+T+L  + G                      + +G
Sbjct: 17  LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG----------------ALAGQFSCTG 60

Query: 114 DLSYLGGE-------WRREVAFAGFEVPI---QMDVSAEKMIFGVAGI--DPQRRAELIK 161
           +L +L  +        +R++    F+  +    + V  + ++F +        RR     
Sbjct: 61  EL-WLNEQRLDMLPAAQRQIGIL-FQDALLFPHLSV-GQNLLFALPATLKGNARRNAANA 117

Query: 162 VLD-IDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
            L+   L    H+    +S GQR RV +   LL   K LLLDE    LDV  R    +++
Sbjct: 118 ALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWV 177

Query: 217 RKECEERGATIIYATH 232
             E    G   +  TH
Sbjct: 178 FSEVRAAGIPTVQVTH 193

Length = 213

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 21/217 (9%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G+   + D +L++  G+   L+G +G GKTT+L+II G        +   GR    D   
Sbjct: 15  GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR----DITR 70

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDP------QRRAELIKVL 163
                  Y G  ++    F    V       A+ + +G+           +R AEL+ ++
Sbjct: 71  LPPQKRDY-GIVFQSYALFPNLTV-------ADNIAYGLKNRGMGRAEVAERVAELLDLV 122

Query: 164 DIDLSWRMH--KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 221
            +  S R +  ++S GQ++RV +   L     +LLLDE    LD   R  L   +R+   
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182

Query: 222 ERGATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMP 257
             G T I  TH  +   +    IV + HG + Q+  P
Sbjct: 183 RLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTP 219

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 22/193 (11%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL--GRSAFHDTALTSS 112
           +ND +L +  G+  +++G +G+GK+T+++++    ++EP   ++L  G+    D A  S+
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR--LIEPTRGEILVDGK----DIAKLSA 97

Query: 113 GDLSYLGGEWRREVA--FAGFEVPIQMDVSAEKMIFG--VAGID-PQRRAELIKVLD-ID 166
            +L  L    R++++  F  F +     V  E + FG  V G+   +R    ++ L+ + 
Sbjct: 98  AELRELR---RKKISMVFQSFALLPHRTV-LENVAFGLEVQGVPKAEREERALEALELVG 153

Query: 167 LS-WRMHKV---SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 222
           L  +        S G ++RV +   L     +LL+DE    LD L R ++   L +   +
Sbjct: 154 LEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213

Query: 223 RGATIIYATHIFD 235
              TI++ TH  D
Sbjct: 214 LKKTIVFITHDLD 226

Length = 386

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 19/85 (22%)

Query: 14  EEEEER-------KMAVMENS---KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLN 63
            E  ER       KM V E S   K   E+  + +   G           L+ DF+  + 
Sbjct: 293 RERSERREVMGTAKMQVEEASRSGKIVFEMENVNYQIDGKQ---------LVKDFSAQVQ 343

Query: 64  AGDRCLLVGSNGAGKTTILKIIGGK 88
            GD+  L+G NG GKTT+LK++ G+
Sbjct: 344 RGDKIALIGPNGCGKTTLLKLMLGQ 368

Length = 635

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 37/181 (20%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   +++D +L L  G    L+G NGAGK+T+++++ G  +V P                
Sbjct: 15  GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG--LVAP---------------- 56

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIFGVAGIDPQ-RRAELIKVLDID 166
              G +       +R        VP  + +D +    +     + P  ++ +++  L   
Sbjct: 57  -DEGVI-------KRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRV 108

Query: 167 -----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV---LARADLLRFLRK 218
                +   M K+S G+ +RV +   LL   ++L+LDE T  +DV   +A  DL+  LR+
Sbjct: 109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRR 168

Query: 219 E 219
           E
Sbjct: 169 E 169

Length = 251

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 61/227 (26%), Positives = 91/227 (40%), Gaps = 40/227 (17%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
            KP + ++ L   Y    G           D +  L  G+   +VG +G+GKTT+LK I 
Sbjct: 3   DKPLLSVSGLSKLYGPGKG---------CRDVSFDLYPGEVLGIVGESGSGKTTLLKCIS 53

Query: 87  GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA--GF--EVP---IQMDV 139
           G+   +   V        +        DL  +    RR +     GF  + P   ++M V
Sbjct: 54  GRLTPDAGTVT-------YRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQV 106

Query: 140 SA-----EK-MIFGV--------AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQIC 185
           SA     E+ M  G            D     E I +  ID   R    S G ++R+QI 
Sbjct: 107 SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVE-IDLDRIDDLPR--TFSGGMQQRLQIA 163

Query: 186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
             L+   +++ +DE T  LDV  +A LL  LR    E G  ++  TH
Sbjct: 164 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210

Length = 258

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 20/200 (10%)

Query: 14  EEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGS 73
           + EE      + N K  VE   + F +          S+  + D +    AG    +VG 
Sbjct: 318 QREEPADAPELPNVKGAVEFRHITFEFAN--------SSQGVFDVSFEAKAGQTVAIVGP 369

Query: 74  NGAGKTTILKII-------GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREV 126
            GAGKTT++ ++        G+ +++   +  + R +   +  T   D        R  +
Sbjct: 370 TGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429

Query: 127 AFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICM 186
                    +    A K       I  +         D  +  R +++S G+R+R+ I  
Sbjct: 430 RLGREGATDEEVYEAAKAAAAHDFILKR-----SNGYDTLVGERGNRLSGGERQRLAIAR 484

Query: 187 GLLKPFKVLLLDEITVDLDV 206
            +LK   +L+LDE T  LDV
Sbjct: 485 AILKNAPILVLDEATSALDV 504

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 35/209 (16%)

Query: 42  GIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR 101
            +   PP    P++   +  L AG+   ++G +G+GK+T+ +++ G        V++   
Sbjct: 339 RLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRL--- 395

Query: 102 SAFHDTALTSSGDLSYLG---GEWRREVA-FAG--------FEVPIQMDVSAEKMIFG-- 147
               D A     D   LG   G   ++V  F G        F      +   EK+I    
Sbjct: 396 ----DGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG----EEADPEKVIEAAR 447

Query: 148 VAGIDPQRRAELIKVL----DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 203
           +AG+      ELI  L    D  +      +S GQR+R+ +   L     +++LDE   +
Sbjct: 448 LAGVH-----ELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502

Query: 204 LDVLARADLLRFLRKECEERGATIIYATH 232
           LD    A L   +    + RG T++   H
Sbjct: 503 LDSEGEAALAAAI-LAAKARGGTVVVIAH 530

Length = 580

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 46/191 (24%)

Query: 48  PPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
             G   L+N+ +  +  G    L+G +GAGKTT+L ++ G+                  T
Sbjct: 16  KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR-----------------KT 58

Query: 108 ALTSSGDLSYLGG-----EWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 162
           A   +G++  + G      ++R   +       Q DV +  +    A             
Sbjct: 59  AGVITGEI-LINGRPLDKNFQRSTGYVE-----QQDVHSPNLTVREA------------- 99

Query: 163 LDIDLSWRMHKVSDGQRRRVQICMGLL-KPFKVLLLDEITVDLDVLARADLLRFLRKECE 221
             +  S  +  +S  QR+R+ I + L  KP  +L LDE T  LD  A  +++RFL+K  +
Sbjct: 100 --LRFSALLRGLSVEQRKRLTIGVELAAKPS-ILFLDEPTSGLDSQAAYNIVRFLKKLAD 156

Query: 222 ERGATIIYATH 232
             G  I+   H
Sbjct: 157 S-GQAILCTIH 166

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 43.2 bits (103), Expect = 7e-05
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
          ++D + ++  G+   L+G NGAGKTT+  +I G 
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 36/216 (16%)

Query: 60  LTLNAGDRCLLVGSNGAGKTTILK----IIGGKHMVEPEMVKVLGRSAFHDTALTSSGDL 115
           L ++ G+   L+G +G+GK+T+L+    +I G        +++LGR+      +   G L
Sbjct: 25  LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSH-IELLGRT------VQREGRL 77

Query: 116 SYLGGEWRREVAFAG-----FEVPIQMDVSAEKMIFGVAGIDP------------QRRAE 158
           +    + R+  A  G     F +  ++ V  E ++ G  G  P            Q++  
Sbjct: 78  A---RDIRKSRANTGYIFQQFNLVNRLSV-LENVLIGALGSTPFWRTCFSWFTREQKQRA 133

Query: 159 LIKVLDIDLS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 214
           L  +  + +      R+  +S GQ++RV I   L++  KV+L DE    LD  +   ++ 
Sbjct: 134 LQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193

Query: 215 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250
            LR   +  G T++   H  D    +   IV +  G
Sbjct: 194 TLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229

Length = 262

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 30/195 (15%)

Query: 70  LVGSNGAGKTTILKIIGG-------KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW 122
           ++G NG GK+T LKI+ G       ++   P   +V+ R  F  T L      +Y    +
Sbjct: 105 ILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKR--FRGTEL-----QNYFKKLY 157

Query: 123 RREVAFAGFEVPIQMDVSAEKMIFGVAG-----IDPQ-RRAELIKVLDID--LSWRMHKV 174
             E+         Q      K++ G  G     +D + +  E+++ L ++  L   + ++
Sbjct: 158 EGELRAV---HKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSEL 214

Query: 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH-- 232
           S G+ +RV I   LL+   V   DE +  LD+  R +  R +R+  E+ G  +I   H  
Sbjct: 215 SGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDL 273

Query: 233 -IFDGLENWPSHIVY 246
            + D L ++  HI+Y
Sbjct: 274 AVLDYLSDF-VHILY 287

Length = 591

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 22/174 (12%)

Query: 54  LINDFTLTLNAGDRCLLVGSNGAGKTTILKII-------GGKHMVEPEMVKVLGRSAFHD 106
           ++ D +LT+N+G+   L+G NGAGKTT   ++        G  +++ E + +L     H 
Sbjct: 18  VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLL---PLHA 74

Query: 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQM--DVSAEKMIFGVAGIDPQRRAELIKVLD 164
            A    G L      +RR   +      +Q+  D+SAE+           R  EL++   
Sbjct: 75  RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR--------EDRANELMEEFH 126

Query: 165 ID-LSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216
           I+ L   M   +S G+RRRV+I   L    K +LLDE    +D ++  D+ R +
Sbjct: 127 IEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII 180

Length = 241

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 25/242 (10%)

Query: 43  IDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-------GKHMVEPEM 95
            D H   G   ++   +L  NAGD   ++GS+G+GK+T L+ I        G   V  E 
Sbjct: 10  EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEE 69

Query: 96  VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFGVAG 150
           ++ L R             L  L    R  + F  F +   M V      A   + GV+ 
Sbjct: 70  IR-LKRDKDGQLKPADKRQLQRL--RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK 126

Query: 151 IDPQRRAE--LIKVLDIDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDL 204
            +   RAE  L KV    ++ +       +S GQ++RV I   L    +V+L DE T  L
Sbjct: 127 AEAIERAEKYLAKV---GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSAL 183

Query: 205 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA 264
           D     ++L+ ++   EE G T++  TH      +  SH++++  GK++   P ++V   
Sbjct: 184 DPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242

Query: 265 SK 266
            +
Sbjct: 243 PQ 244

Length = 256

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 39/221 (17%)

Query: 54  LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
           L+ + +     G+   ++GS+GAGKTT++  +  +    P+ VK  G    +   + +  
Sbjct: 40  LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR---SPKGVKGSGSVLLNGMPIDAK- 95

Query: 114 DLSYLGGEWRREVAFA-GFEVPIQMDVSAEKMIF------GVAGIDPQRRAELIKVLD-- 164
                  E R   A+    ++ I      E ++F             ++R  + +VL   
Sbjct: 96  -------EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQAL 148

Query: 165 ---------IDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 215
                    I +  R+  +S G+R+R+     LL    +L  DE T  LD      +++ 
Sbjct: 149 GLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208

Query: 216 LRKECEERGATIIYATH-----IFDGLENWPSHIVYVAHGK 251
           L+    ++G TII   H     +F+  +     I+ +A G+
Sbjct: 209 LKGLA-QKGKTIICTIHQPSSELFELFD----KIILMAEGR 244

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 48/212 (22%), Positives = 95/212 (44%), Gaps = 35/212 (16%)

Query: 30  TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
           T+E+  ++F Y     H  P     IN   LT+  G+   L+G NG+GK+T+  ++ G  
Sbjct: 322 TLELRNVRFAYQDNAFHVGP-----IN---LTIKRGELVFLIGGNGSGKSTLAMLLTG-- 371

Query: 90  MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRR--EVAFAGFE-----VPIQMDVSAE 142
           + +P+  ++L      D    S+  L     ++R+     F+ +      +  +   S +
Sbjct: 372 LYQPQSGEIL-----LDGKPVSAEQLE----DYRKLFSAVFSDYHLFDQLLGPEGKASPQ 422

Query: 143 KMIFGVAGIDPQRRAELI--KVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 200
            +   +  ++   +  L   +  ++ LS        GQ++R+ + + LL+   +L+LDE 
Sbjct: 423 LIEKWLQRLELAHKTSLNDGRFSNLKLS-------TGQKKRLALLLALLEERDILVLDEW 475

Query: 201 TVDLDVLARADLLRFLRKECEERGATIIYATH 232
             D D   R +  + L    +E+G TI   +H
Sbjct: 476 AADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507

Length = 546

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 23/213 (10%)

Query: 49   PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
            P   P ++   +T         +G NGAGKTT L I+ G  ++ P    VL      +T 
Sbjct: 940  PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTG--LLPPTSGTVLVGGKDIETN 997

Query: 109  LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-----GVAGIDPQRRAELIKVL 163
            L +      LG   +  + F    V       AE ++F     G +  + Q   E + + 
Sbjct: 998  LDAV--RQSLGMCPQHNILFHHLTV-------AEHILFYAQLKGRSWEEAQLEMEAM-LE 1047

Query: 164  DIDLSWRMHK----VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 219
            D  L  + ++    +S G +R++ + +  +   KV++LDE T  +D  +R  +   L K 
Sbjct: 1048 DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK- 1106

Query: 220  CEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
                G TII +TH  D  +     I  ++ G+L
Sbjct: 1107 -YRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 49/192 (25%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEM----VKVLGRS------ 102
           P++++ +  +N G+   +VG NGAGK+T+L +I G H   P+     + + GR       
Sbjct: 274 PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH---PQGYSNDLTLFGRRRGSGET 330

Query: 103 ----AFHDTALTSSGDLSYLGGEWRREVAFAGF--EVPIQMDVSAEKMIFGVAGIDPQRR 156
                 H   ++SS  L Y      R V  +GF   + I   VS           D Q++
Sbjct: 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-----------DRQQK 379

Query: 157 --AELIKVLDID----------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL 204
              + + +L ID          LSW       GQ+R   I   L+K   +L+LDE    L
Sbjct: 380 LAQQWLDILGIDKRTADAPFHSLSW-------GQQRLALIVRALVKHPTLLILDEPLQGL 432

Query: 205 DVLARADLLRFL 216
           D L R  + RF+
Sbjct: 433 DPLNRQLVRRFV 444

Length = 490

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 23/192 (11%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA------ 108
           +N  + ++  G+   ++G NG+GK+T  ++I G        VK+ G     +        
Sbjct: 23  LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82

Query: 109 ---LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI 165
              +  + D  ++G     +VAF G E      +  E+MI  V          L+ V  +
Sbjct: 83  IGMVFQNPDNQFVGATVEDDVAF-GME---NQGIPREEMIKRV-------DEALLAVNML 131

Query: 166 DLSWRM-HKVSDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 223
           D   R   ++S GQ++RV +  +  L+P ++++LDE T  LD   R +++R + +  E+ 
Sbjct: 132 DFKTREPARLSGGQKQRVAVAGIIALRP-EIIILDESTSMLDPTGRQEIMRVIHEIKEKY 190

Query: 224 GATIIYATHIFD 235
             T++  TH  D
Sbjct: 191 QLTVLSITHDLD 202

Length = 277

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 45/210 (21%), Positives = 92/210 (43%), Gaps = 19/210 (9%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +N+ +LT        ++G+ G+GK+T++++  G  + E       G++   D A+ ++  
Sbjct: 27  LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET------GQTIVGDYAIPANLK 80

Query: 115 LSYLGGEWRREVAFAGFEVP--------IQMDVSAEKMIFGVAGIDPQRRA-ELIKVLDI 165
                   R+E+    F+ P        I+ D++   +  G    +  ++  EL+K++ +
Sbjct: 81  KIKEVKRLRKEIGLV-FQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL 139

Query: 166 DLSWRMH---KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 222
              +      ++S GQ+RRV +   +      L+LDE T  LD     D +    +  +E
Sbjct: 140 PEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE 199

Query: 223 RGATIIYATHIFDGLENWPSHIVYVAHGKL 252
               II  TH  D +      ++ +  GK+
Sbjct: 200 YKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229

Length = 289

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 38/219 (17%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   +++  +  +  G+   L+G NGAGKTT L+++ G  +  P+               
Sbjct: 18  GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG--LTHPD--------------- 60

Query: 110 TSSGDLSYLGGE---WRREVAFAGFEVPIQMD-------VSAEKMIFG-VAGIDPQRRAE 158
             +G +S L GE    R   A     V  Q D       V    ++FG   G+       
Sbjct: 61  --AGSIS-LCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA 117

Query: 159 LIKVL------DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL 212
           L+  L      +     ++ ++S G +RR+ +   L+    VL+LDE T  LD  AR  +
Sbjct: 118 LVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177

Query: 213 LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
              LR     RG TI+  TH  +  E     +  +  G+
Sbjct: 178 WERLR-SLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215

Length = 306

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 58/220 (26%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH-------MVEP-EMVKVLGR 101
           G+ PL  + ++    G+R  L+G+NG GK+T +KI+GG          ++P E +  L +
Sbjct: 12  GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ 71

Query: 102 SAFH-------DTALTSSGDLSYLGGEWRR------------------EVAFAGFEVPIQ 136
             F        DT +    +L  +  E  R                  EV FA      +
Sbjct: 72  DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFA------E 125

Query: 137 MD-VSAEKMIFGVAGIDPQRRAELIKVLDIDLSWR---MHKVSDGQRRRVQICMGLLKPF 192
           MD  +AE            R  EL+  + I        M +V+ G + RV +   L    
Sbjct: 126 MDGYTAE-----------ARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNP 174

Query: 193 KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
            +LLLDE T +LD+    + +R+L     ER +T+I  +H
Sbjct: 175 DILLLDEPTNNLDI----NTIRWLEDVLNERNSTMIIISH 210

Length = 530

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 7/56 (12%)

Query: 32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
          E+  + F YPG          P++ + + ++  G+   ++G +G+GK+T+ ++I G
Sbjct: 2  EVENVSFRYPG-------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG 50

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 40/197 (20%)

Query: 54  LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS---------AF 104
           L++  +L L  G+   ++G NGAGK+T+LK + G+   +   V + G           A 
Sbjct: 16  LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75

Query: 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK--V 162
           H   L  +  L++          F   EV +QM           +G +P+    +    +
Sbjct: 76  HRAVLPQNSSLAF---------PFTVQEV-VQMGRIP-----HRSGREPEEDERIAAQAL 120

Query: 163 LDIDLS------WRMHKVSDGQRRRVQICMGLLK------PFKVLLLDEITVDLDVLARA 210
              DLS      +R   +S G+++RVQ+   L +        + L LDE T  LD+  + 
Sbjct: 121 AATDLSGLAGRDYRT--LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178

Query: 211 DLLRFLRKECEERGATI 227
             LR  R+   E GA +
Sbjct: 179 HTLRLARQLAREGGAVL 195

Length = 259

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 14  EEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGS 73
           E+E++    V+E +K  +E   + FTYPG +        P + +    + AG    LVG 
Sbjct: 325 EQEKDEGKRVIERAKGDIEFRNVTFTYPGKE-------VPALRNINFKIPAGKTVALVGR 377

Query: 74  NGAGKTTI 81
           +G+GK+TI
Sbjct: 378 SGSGKSTI 385

Length = 582

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 33/214 (15%)

Query: 29  PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88
           P +EI  L  ++ G            ++D +LT+  G+   L+G++G GK+T+L+++ G 
Sbjct: 18  PLLEIRNLTKSFDGQ---------HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF 68

Query: 89  HMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREV--AFAGFEVPIQMDVSAEKMIF 146
                  + + G             DLS++   ++R +   F  + +   M V  + + F
Sbjct: 69  EQPTAGQIMLDGV------------DLSHVP-PYQRPINMMFQSYALFPHMTVE-QNIAF 114

Query: 147 GVA------GIDPQRRAELIKVLDI-DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLD 198
           G+            R  E++ ++ + + + R  H++S GQR+RV +   L K  K+LLLD
Sbjct: 115 GLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174

Query: 199 EITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           E    LD   R  +   +    E  G T +  TH
Sbjct: 175 EPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH 208

Length = 377

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 43/207 (20%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +   + TL  G    ++G NG+GK+T+ K++ G  M+EP      G     D  L   GD
Sbjct: 29  VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG--MIEPTS----GELLIDDHPLHF-GD 81

Query: 115 LSYLGGEWR------------REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK- 161
            SY     R            R+      + P++++            ++P++R + I  
Sbjct: 82  YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN----------TDLEPEQREKQIIE 131

Query: 162 ------VLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 215
                 +L    S+  H ++ GQ++R+ +   L+   KV++ DE    LD+  R+ L+  
Sbjct: 132 TLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINL 191

Query: 216 LRKECEERGATIIYAT-------HIFD 235
           + +  E++G + IY T       HI D
Sbjct: 192 MLELQEKQGISYIYVTQHLGMMKHISD 218

Length = 267

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 167 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 226
           LS   H++S G R+RV I M L     VL+ DE T  LDV  +A +L+ ++   +E    
Sbjct: 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG 221

Query: 227 IIYATH 232
           +I+ TH
Sbjct: 222 VIFITH 227

Length = 623

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 48/226 (21%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
            +  + +N +  T+   +GH        + D + T+  G    LVG NG+GK+T+ K + 
Sbjct: 3   QQAGIVVNDVTVTWR--NGHTA------LRDASFTVPGGSIAALVGVNGSGKSTLFKALM 54

Query: 87  GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRRE-----VAFA--GFEVPIQMDV 139
           G        V++            +SG +S LG   R+      VA+     EV     V
Sbjct: 55  G-------FVRL------------ASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPV 95

Query: 140 SAEKMI----FGVAGI-------DPQR-RAELIKVLDIDLSWR-MHKVSDGQRRRVQICM 186
             E ++    +G  G        D Q   A L +V  ++   R + ++S GQ++RV +  
Sbjct: 96  LVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLAR 155

Query: 187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
            + +  +V+LLDE    +DV   A ++  LR E  + G T++ +TH
Sbjct: 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLR-ELRDEGKTMLVSTH 200

Length = 272

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 62/234 (26%), Positives = 89/234 (38%), Gaps = 36/234 (15%)

Query: 30  TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
            V I    FTYP  D        P + +   TL  G    + G  G+GK+T+L +I    
Sbjct: 315 DVNIRQ--FTYPQTD-------HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365

Query: 90  MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 149
            V        G   FHD  LT    L      WR  +A       +  D  A  +  G  
Sbjct: 366 DVSE------GDIRFHDIPLT---KLQL--DSWRSRLAVVSQTPFLFSDTVANNIALGRP 414

Query: 150 GIDPQ---RRAELIKVLD----------IDLSWRMHKVSDGQRRRVQICMGLLKPFKVLL 196
               Q     A L  V D           ++  R   +S GQ++R+ I   LL   ++L+
Sbjct: 415 DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474

Query: 197 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250
           LD+    +D      +L  LR+  E R  T+I + H    L    S I+ + HG
Sbjct: 475 LDDALSAVDGRTEHQILHNLRQWGEGR--TVIISAHRLSALTE-ASEILVMQHG 525

Length = 569

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 44/217 (20%)

Query: 54  LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
           ++    LT+  G+   L+G NG+GK+T+ K I G    E       G   F    +T   
Sbjct: 15  ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV----TEGEILFKGEDIT--- 67

Query: 114 DLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHK 173
           DL     E  R   F  F+ P ++         GV      + A+ ++ ++         
Sbjct: 68  DLPP--EERARLGIFLAFQYPPEIP--------GV------KNADFLRYVNEGF------ 105

Query: 174 VSDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLAR---ADLLRFLRKECEERGATIIY 229
            S G+++R +I  + LL+P  + +LDE    LD+ A    A+++  LR+E    G +++ 
Sbjct: 106 -SGGEKKRNEILQLLLLEP-DLAILDEPDSGLDIDALRLVAEVINKLREE----GKSVLI 159

Query: 230 ATH---IFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263
            TH   + D ++    H++Y   G++  +   +   E
Sbjct: 160 ITHYQRLLDYIKPDRVHVLY--DGRIVKSGDKELALE 194

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 30/224 (13%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           M    P +++N L F Y          +  ++   ++ +       ++G +G GK+T LK
Sbjct: 1   MSKLIPAIKVNNLSFYY---------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLK 51

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTSSG-DLSYLGGEWRREVAFAGFEVPIQMDVSA- 141
            +   + +E E V+V GR  F +  +     +L+ L    RR+V+      P    +S  
Sbjct: 52  CLNRMNELESE-VRVEGRVEFFNQNIYERRVNLNRL----RRQVSMV-HPKPNLFPMSVY 105

Query: 142 EKMIFGVAGIDPQRRAEL-------IKVLDI--DLSWRMHK----VSDGQRRRVQICMGL 188
           + + +GV  +  + + E+       +K  D+  ++  ++HK    +S GQ++R+ I   L
Sbjct: 106 DNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165

Query: 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
               KVLL+DE    LD +A   +   ++        T++  +H
Sbjct: 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209

Length = 261

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 61/237 (25%), Positives = 103/237 (43%), Gaps = 36/237 (15%)

Query: 57  DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLS 116
              LTL A     + G +GAGKT+++  I G  +  P+     GR   +   L  +    
Sbjct: 16  TVNLTLPAQGITAIFGRSGAGKTSLINAISG--LTRPQK----GRIVLNGRVLFDAEKGI 69

Query: 117 YLGGEWRREVAFAGFEVPIQMDVSAEKMIF-----------GVAGIDPQRRAELIKVLDI 165
            L  E RR     G+       V  +  +F           G+A     +  +++ +L I
Sbjct: 70  CLPPEKRR----IGY-------VFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGI 118

Query: 166 D--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 223
           +  L      +S G+++RV I   LL   ++LL+DE    LD+  + +LL +L +   E 
Sbjct: 119 EPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178

Query: 224 GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKE 280
              I+Y +H  D +      +V +  GK++   P+++V  +   S MR    WL KE
Sbjct: 179 NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS---SAMR---PWLPKE 229

Length = 352

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 26/187 (13%)

Query: 58  FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSY 117
            +  + AG+   LVG NGAGK+T+L  + G        ++  G+     +A   +   +Y
Sbjct: 18  LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGS-IQFAGQPLEAWSATELARHRAY 76

Query: 118 LGGEWRREVAFAGFE-----VPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMH 172
           L  +     A   +       P +        + G   +D +            L    +
Sbjct: 77  LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDK------------LGRSTN 124

Query: 173 KVSDGQRRRVQICMGLLKPF-------KVLLLDEITVDLDVLARADLLRFLRKECEERGA 225
           ++S G+ +RV++   +L+         ++LLLDE    LDV  ++ L R L   C++ G 
Sbjct: 125 QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GL 183

Query: 226 TIIYATH 232
            I+ ++H
Sbjct: 184 AIVMSSH 190

Length = 248

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 35/167 (20%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   ++N  +L++  G+   L+G NGAGKTT   +I G  +V+P+  K+L         +
Sbjct: 11  GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG--LVKPDSGKIL----LDGQDI 64

Query: 110 TSS--------GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIK 161
           T          G + YL             E  I   ++ E+ I  V  I    + E  +
Sbjct: 65  TKLPMHKRARLG-IGYLPQ-----------EASIFRKLTVEENILAVLEIRGLSKKEREE 112

Query: 162 VLD--IDLSWRMH-------KVSDGQRRRVQICMGLLKPFKVLLLDE 199
            L+  ++     H        +S G+RRRV+I   L    K LLLDE
Sbjct: 113 KLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           K+S G+++RV I   +LK   +LLLDE T  LD     ++   LR   + R  T I   H
Sbjct: 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGR--TTIVIAH 194

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 42/210 (20%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  L   Y        P   P++ + +  + AG++  +VG  GAGK+T++  +     
Sbjct: 7   IEVENLSVRYA-------PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILAL--FRF 57

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA--------FAGFEVPIQMDVSAE 142
           +E E  K+       D    S+  L  L    R  +         F+G  +   +D    
Sbjct: 58  LEAEEGKIE-----IDGIDISTIPLEDL----RSSLTIIPQDPTLFSG-TIRSNLDP--- 104

Query: 143 KMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV 202
                    D     E+   L +  S     +S GQR+ + +   LLK  +VL+LDE T 
Sbjct: 105 --------FDEYSDEEIYGALRV--SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATA 154

Query: 203 DLDVLARADLLRFLRKECEERGATIIYATH 232
            +D    A + + +R+E     +TI+   H
Sbjct: 155 SIDYATDALIQKTIREEFT--NSTILTIAH 182

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 43/207 (20%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           M  +KP +EI  L  +              ++    L++N G+   ++G NG+GK+T+ K
Sbjct: 1   MNKNKPILEIKNLHASV---------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSK 51

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTS--SGDLSYLGGEWRREVAFAGFEVPIQMD-VS 140
           +I G H   P    + G   F   ++      + ++LG        F  F+ PI++  VS
Sbjct: 52  VIAG-H---PAYKILEGDILFKGESILDLEPEERAHLG-------IFLAFQYPIEIPGVS 100

Query: 141 AE---------KMIF-GVAGIDPQRRAELI----KVLDIDLSWRMHKV----SDGQRRRV 182
                      K  F G+  +DP    E+I    K++ +D S+    V    S G+++R 
Sbjct: 101 NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN 160

Query: 183 QIC-MGLLKPFKVLLLDEITVDLDVLA 208
           +I  M LL   ++ +LDE    LD+ A
Sbjct: 161 EILQMALLDS-ELAILDETDSGLDIDA 186

Length = 252

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 175 SDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           S G  +R+ I + LL   PF  ++ DE T DLDV+A+A +L  L    ++R   ++  TH
Sbjct: 142 SGGMLQRMMIALALLCEAPF--IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199

Length = 254

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 40/176 (22%)

Query: 52  TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
           TP++ + +  L  G    + GS G+GK+++L +I G+  +EP            +  +  
Sbjct: 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE--LEPS-----------EGKIKH 485

Query: 112 SGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMIFGVAGIDPQRRAELIKV--LDIDLS 168
           SG +S+              +   I      + +IFG++  D  R   +IK   L+ D++
Sbjct: 486 SGRISFSP------------QTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIA 532

Query: 169 WRMHK-----------VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 213
               K           +S GQR R+ +   + K   + LLD     LDV+   ++ 
Sbjct: 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF 588

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 20/210 (9%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           I+D       G    +VG  G+GK+T+++ I    +++P      G     D  +T    
Sbjct: 23  IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA--LLKPTT----GTVTVDDITITHKTK 76

Query: 115 LSYLGGEWRREVAFAGFEVP-IQM--DVSAEKMIFGVA--GIDPQRRAELIKVLDIDLSW 169
             Y+    R+ +    F+ P  Q+  D    ++IFG     ++          L +DL +
Sbjct: 77  DKYIR-PVRKRIGMV-FQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF 134

Query: 170 RMH-------KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 222
                     ++S GQ R++ I   L     +++LDE T  LD  ++  ++R L+    +
Sbjct: 135 SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194

Query: 223 RGATIIYATHIFDGLENWPSHIVYVAHGKL 252
              TII  +H  + +  +   ++ +  G +
Sbjct: 195 ENKTIILVSHDMNEVARYADEVIVMKEGSI 224

Length = 286

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 234
           S G++RR+ I   LL    +LLLDE T  LD      +L  L +  + +  T++  TH  
Sbjct: 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVLMITHRL 534

Query: 235 DGLENWPSHIVYVAHGKL 252
            GLE +   I  + +G++
Sbjct: 535 TGLEQF-DRICVMDNGQI 551

Length = 574

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 45/202 (22%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP------EMV---KVLGRSAFH 105
           +++ +L + AG+   L G NGAGK+T++K++ G   V P      E++   + L  S   
Sbjct: 21  LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG---VYPHGTYEGEIIFEGEELQASNIR 77

Query: 106 DTA----------LTSSGDLS-----YLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG 150
           DT           L    +LS     +LG E        G      M + A+K++     
Sbjct: 78  DTERAGIAIIHQELALVKELSVLENIFLGNEITP----GGIMDYDAMYLRAQKLL----- 128

Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 210
                 A+L   LDI+ +  +  +  GQ++ V+I   L K  ++L+LDE T  L     A
Sbjct: 129 ------AQL--KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETA 180

Query: 211 DLLRFLRKECEERGATIIYATH 232
            LL  +R + +  G   IY +H
Sbjct: 181 VLLDIIR-DLKAHGIACIYISH 201

Length = 506

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 40/197 (20%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL------------- 99
           P++N  + T+  G    +VG +GAGK+TIL+++      +     +              
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLL--FRFYDVNSGSITIDGQDIRDVTQQS 334

Query: 100 GRSAF----HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQR 155
            R A      DT L +     Y        + +         D +AE++    A  +  +
Sbjct: 335 LRRAIGIVPQDTVLFNDTIA-YN-------IKYGR------PDATAEEVG---AAAEAAQ 377

Query: 156 RAELIKVL----DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 211
             + I+ L    D  +  R  K+S G+++RV I   +LK   +L+LDE T  LD      
Sbjct: 378 IHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437

Query: 212 LLRFLRKECEERGATII 228
           +   LR+    R   +I
Sbjct: 438 IQAALREVSAGRTTLVI 454

Length = 497

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 47/231 (20%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
                P +E+  L   Y         G    + D  L +       L+G +G GK+T+L+
Sbjct: 1   ETMKIPAIEVRDLNLYY---------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLR 51

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTSSG-DLSYLGGEWRREVAFAGFEVP------IQ 136
            +   + + P   +V G        +     D+  L    RR V    F+ P      I 
Sbjct: 52  CLNRMNDLIPG-ARVEGEVLLDGKNIYDPKVDVVEL----RRRVGMV-FQKPNPFPMSIY 105

Query: 137 MDVSAEKMIFGVAGIDPQRRAE--LIKVLDIDLSW-----RMHK----VSDGQRRRVQIC 185
            +V+    + G+   +     E  L K     L W     R+HK    +S GQ++R+ I 
Sbjct: 106 DNVAYGLRLHGIKDKELDEIVESSLKKA---AL-WDEVKDRLHKSALGLSGGQQQRLCIA 161

Query: 186 MGL-LKPFKVLLLDEITVDLDVLARA---DLLRFLRKECEERGATIIYATH 232
             L +KP +VLL+DE T  LD ++     +L+  L+K+      TI+  TH
Sbjct: 162 RALAVKP-EVLLMDEPTSALDPISTLKIEELITELKKK-----YTIVIVTH 206

Length = 253

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 175 SDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 233
           S G R+RV +   + L P ++L LDE T  LD ++   +   +R+  +  G T+I  TH 
Sbjct: 147 SGGMRKRVALARAIALDP-ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205

Query: 234 FDGLENWPSHIVYVAHGKLQ 253
            D L      +  +A GK+ 
Sbjct: 206 LDSLLTIADRVAVLADGKVI 225

Length = 263

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 27/246 (10%)

Query: 16   EEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNG 75
            EE +++    N    + +N L   Y G        S+P ++   + +  G+   L+G NG
Sbjct: 1923 EERQRIISGGNKTDILRLNELTKVYSG-------TSSPAVDRLCVGVRPGECFGLLGVNG 1975

Query: 76   AGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPI 135
            AGKTT  K++ G   V      V G+S      LT+  D+    G   +      F+   
Sbjct: 1976 AGKTTTFKMLTGDTTVTSGDATVAGKS-----ILTNISDVHQNMGYCPQ------FDAID 2024

Query: 136  QMDVSAEKMIF-----GVAGIDPQRRAEL-IKVLDIDL-SWRMHKV-SDGQRRRVQICMG 187
             +    E +       GV   + ++ A   I+ L + L + R+    S G +R++   + 
Sbjct: 2025 DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIA 2084

Query: 188  LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247
            L+    ++LLDE T  +D  AR  L   +     E G  ++  +H  +  E   + +  +
Sbjct: 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIM 2143

Query: 248  AHGKLQ 253
              G  Q
Sbjct: 2144 VKGAFQ 2149

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 45/206 (21%), Positives = 81/206 (39%), Gaps = 45/206 (21%)

Query: 70  LVGSNGAGKTTILKIIG-------GKHMVEPEMVKVLGRSAFHDTALTS------SGDLS 116
           LVG NG GK+T LKI+        GK    P+  ++L    F  + L +       GD+ 
Sbjct: 31  LVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEIL--DEFRGSELQNYFTKLLEGDVK 88

Query: 117 ------YLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LS 168
                 Y+              +P  +     +++      +  +  EL+  L++   L 
Sbjct: 89  VIVKPQYVD------------LIPKAVKGKVGELLKKKD--ERGKLDELVDQLELRHVLD 134

Query: 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 228
             + ++S G+ +RV I   L +       DE +  LD+  R +  R +R E  E    ++
Sbjct: 135 RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIR-ELAEDDNYVL 193

Query: 229 YATH---IFDGLENWPSHIVYVAHGK 251
              H   + D L    S  ++  +G+
Sbjct: 194 VVEHDLAVLDYL----SDYIHCLYGE 215

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 42/229 (18%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
            +   P +++  L F Y          ++  I   ++ +       ++G +G GK+T +K
Sbjct: 1   NQQLIPAIKVKDLSFYY---------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIK 51

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTSSG-DLSYLGGEWRREVAFAGFEVPIQMDVSA- 141
            +     +E   VKV G   F    +     +++ L    RR++    F+ P    +S  
Sbjct: 52  TLNRISELEGP-VKVEGVVDFFGQNIYDPRININRL----RRQIGMV-FQRPNPFPMSIY 105

Query: 142 EKMIFGV--AGIDPQRRAELIKVLDIDLS----WRMHK---------VSDGQRRRVQICM 186
           E + +GV  +   PQ  A+L ++++  L     W+  K         +S GQ++R+ I  
Sbjct: 106 ENVAYGVRISAKLPQ--ADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163

Query: 187 GLLKPFKVLLLDEITVDLDVLAR---ADLLRFLRKECEERGATIIYATH 232
            L    KVLL+DE    LD +A     +L+  LR E      TI   TH
Sbjct: 164 ALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSEL-----TIAIVTH 207

Length = 259

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 58/203 (28%), Positives = 83/203 (40%), Gaps = 49/203 (24%)

Query: 37  KFTYPGIDGHPP-------------PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           KF +P  D  P              PG   L  +    ++   R  +VG NG GK+TILK
Sbjct: 494 KFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILK 553

Query: 84  IIGGKHMVEP--------EMVKVLGRSAFHDTALT-SSGDLSYLGGEWRREVAFAGFEVP 134
           +I G+  ++P          V++   S  H   L  SS  L Y+         F G  VP
Sbjct: 554 LISGE--LQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMR------CFPG--VP 603

Query: 135 IQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWR-MHKVSDGQRRRVQICMGLLKPFK 193
            Q  + A    FGV G               +L+ + M+ +S GQ+ RV       K   
Sbjct: 604 EQ-KLRAHLGSFGVTG---------------NLALQPMYTLSGGQKSRVAFAKITFKKPH 647

Query: 194 VLLLDEITVDLDVLARADLLRFL 216
           +LLLDE +  LD+ A   L++ L
Sbjct: 648 ILLLDEPSNHLDLDAVEALIQGL 670

Length = 718

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 46/223 (20%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  +   +P         +   +N+ +L + AG+   ++G++GAGK+T+++ I    +
Sbjct: 2   IELKNISKVFPQ-----GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINL--L 54

Query: 91  VEPEMVKVL--GRSAFHD-TALTSSGDLSYLGGEWRREVA--FAGFEVPIQMDVSAEKMI 145
             P   +VL  G+    D TAL S  +L     + RR++   F  F +     +S+ + +
Sbjct: 55  ERPTSGRVLVDGQ----DLTAL-SEKELR----KARRQIGMIFQHFNL-----LSS-RTV 99

Query: 146 FG-------VAGID----PQRRAELIKVLDIDLSWRMHK----VSDGQRRRVQICMGLL- 189
           F        +AG        R  EL+++  + LS +  +    +S GQ++RV I   L  
Sbjct: 100 FDNVALPLELAGTPKAEIKARVTELLEL--VGLSDKADRYPAQLSGGQKQRVAIARALAS 157

Query: 190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
            P KVLL DE T  LD      +L  L+    E G TI+  TH
Sbjct: 158 NP-KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH 199

Length = 343

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 169 WRMHKVSDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 227
           W    +S G+++R+    + L KP K + LDE T  LD     +    L +  +E G T+
Sbjct: 88  W-DDVLSGGEQQRLAFARLLLHKP-KFVFLDEATSALDE----ESEDRLYQLLKELGITV 141

Query: 228 IYATH 232
           I   H
Sbjct: 142 ISVGH 146

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           G   LI D ++TL  G    LVG NG GKTT L+
Sbjct: 188 GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLR 221

Length = 718

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 21/184 (11%)

Query: 44  DGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA 103
           D H   G+   ++  +L     +   L+G +G GK+T L+ +  +   + E +K+ G   
Sbjct: 9   DVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLN-RMNDDIENIKITGEIK 67

Query: 104 FHDTALTSSG-DLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFG--VAGIDP-----Q 154
           F    +  S  DL  L    R+EV    F+ P     S  + + +G  +AG+       Q
Sbjct: 68  FEGQNIYGSKMDLVEL----RKEVGMV-FQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQ 122

Query: 155 RRAELIKVLDI------DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 208
           R  E +K   I      +L       S GQ++R+ I   L    KV+LLDE T  LD ++
Sbjct: 123 RVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182

Query: 209 RADL 212
            +++
Sbjct: 183 SSEI 186

Length = 251

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 54/229 (23%)

Query: 30  TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
            +++ A++ +Y G         T +I    L +  G+  +LVG +G GK+T+L+++ G  
Sbjct: 3   GLKLQAVRKSYDG--------KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG-- 52

Query: 90  MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGE-------WRREVA--FAGFEVPIQMDVS 140
            +E                  +SG++ ++GG          R++A  F  + +   M V 
Sbjct: 53  -LER----------------ITSGEI-WIGGRVVNELEPADRDIAMVFQNYALYPHMSV- 93

Query: 141 AEKMIFG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMG---LL 189
            E M +G  + G+      +R AE  ++L+++  L  +  ++S GQR+RV   MG   + 
Sbjct: 94  RENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRV--AMGRAIVR 151

Query: 190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE 238
           +P  V L DE   +LD   R  +   +++       T +Y TH  D +E
Sbjct: 152 EP-AVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTH--DQVE 197

Length = 356

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 30/198 (15%)

Query: 51  STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110
            T ++++ + ++  G+   +VGS+G+GK+T+L ++GG  +  P    V+    F+   ++
Sbjct: 21  QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG--LDTPTSGDVI----FNGQPMS 74

Query: 111 SSGDLSYLGGEWR-REVA-----------FAGFEVPIQMDVSAEKMIFGVAGIDPQRRA- 157
                S    E R +++            F   E     +V+   +I      +   RA 
Sbjct: 75  KLS--SAAKAELRNQKLGFIYQFHHLLPDFTALE-----NVAMPLLIGKKKPAEINSRAL 127

Query: 158 ELIKV--LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 215
           E++    L+   + R  ++S G+R+RV I   L+   +++L DE T +LD    AD +  
Sbjct: 128 EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD-ARNADSIFQ 186

Query: 216 LRKECEER-GATIIYATH 232
           L  E     G   +  TH
Sbjct: 187 LLGELNRLQGTAFLVVTH 204

Length = 233

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 10/65 (15%)

Query: 173 KVSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLR---KECEER-GATI 227
           ++S GQ++RV +   L LKP KVLL DE   +LD    A+L R +R   +E +++   T 
Sbjct: 136 QISGGQQQRVALARALILKP-KVLLFDEPLSNLD----ANLRRSMREKIRELQQQFNITS 190

Query: 228 IYATH 232
           +Y TH
Sbjct: 191 LYVTH 195

Length = 351

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 28/198 (14%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +++ +L +  G+ C+L+G +G+GK+T+L+ + G + V    V V       D A   +  
Sbjct: 40  VHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAAT 99

Query: 115 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAGI-DPQRR---AELIKVLDIDLS 168
           L  L    R  + F  F +     V  E + FG  + G+   +RR    E ++++ +   
Sbjct: 100 LRRLRTH-RVSMVFQQFALLPWRTV-EENVAFGLEMQGMPKAERRKRVDEQLELVGLA-Q 156

Query: 169 WR---MHKVSDGQRRRVQICMGLLKPFK----VLLLDEITVDLDVLARA----DLLRFLR 217
           W      ++S G ++RV    GL + F     +LL+DE    LD L R     +LL    
Sbjct: 157 WADRKPGELSGGMQQRV----GLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQS 212

Query: 218 KECEERGATIIYATHIFD 235
           K       TI++ +H  D
Sbjct: 213 K----LKKTIVFVSHDLD 226

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 26/189 (13%)

Query: 58  FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSY 117
            +  + AG+   LVG NGAGK+T+L  + G        ++  G+     +A   +   +Y
Sbjct: 15  LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGS-IQFAGQPLEAWSAAELARHRAY 73

Query: 118 LGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQ-------RRAELIKVLDIDLSWR 170
           L  +            P  M V     +        +         AE + + D  L   
Sbjct: 74  LSQQQT---------PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-KLGRS 123

Query: 171 MHKVSDGQRRRVQICMGLLK------PF-KVLLLDEITVDLDVLARADLLRFLRKECEER 223
           ++++S G+ +RV++   +L+      P  ++LLLDE    LDV  +A L R L + C++ 
Sbjct: 124 VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ- 182

Query: 224 GATIIYATH 232
           G  ++ ++H
Sbjct: 183 GIAVVMSSH 191

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	100.0
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.98
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.98
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.97
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.97
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.97
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.97
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.97
KOG0062	582	consensus ATPase component of ABC transporters wit	99.97
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.97
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.97
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.97
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.97
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.96
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.96
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.96
KOG0062	582	consensus ATPase component of ABC transporters wit	99.96
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.95
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.95
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.95
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.95
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.95
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.94
COG4178	604	ABC-type uncharacterized transport system, permeas	99.94
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.94
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.94
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.92
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.92
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.91
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.91
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.9
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.89
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.89
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.88
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.87
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.87
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.86
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.86
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.85
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.84
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.83
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.82
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.82
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.82
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.81
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.81
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.78
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.76
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.71
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.71
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.67
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.65
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.65
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.62
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.58
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.56
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.55
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.54
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.53
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.52
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.5
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.49
PHA02562	562	46 endonuclease subunit; Provisional	99.48
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.47
PRK10869	553	recombination and repair protein; Provisional	99.47
PRK13695	174	putative NTPase; Provisional	99.46
cd01128	249	rho_factor Transcription termination factor rho is	99.44
PRK03918	880	chromosome segregation protein; Provisional	99.42
PRK01156	895	chromosome segregation protein; Provisional	99.42
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.41
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.41
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.36
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.36
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.29
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.28
COG3910	233	Predicted ATPase [General function prediction only	99.27
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.25
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.23
PRK00064	361	recF recombination protein F; Reviewed	99.2
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.2
PRK02224	880	chromosome segregation protein; Provisional	99.19
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.18
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.17
PRK06067	234	flagellar accessory protein FlaH; Validated	99.17
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.11
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.99
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.99
TIGR00611	365	recf recF protein. All proteins in this family for	98.98
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.93
smart00382	148	AAA ATPases associated with a variety of cellular	98.93
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.93
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.91
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.89
PRK14079	349	recF recombination protein F; Provisional	98.86
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.84
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.79
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.75
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.72
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.7
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.68
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.64
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.61
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.59
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.54
PRK00300	205	gmk guanylate kinase; Provisional	98.53
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.53
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.52
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.52
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.51
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.51
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.5
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.49
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.49
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.46
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.46
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.43
TIGR00767	415	rho transcription termination factor Rho. Members	98.43
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.42
PRK09862	506	putative ATP-dependent protease; Provisional	98.41
PRK08149	428	ATP synthase SpaL; Validated	98.37
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.35
PRK09099	441	type III secretion system ATPase; Provisional	98.31
PRK09825	176	idnK D-gluconate kinase; Provisional	98.31
PRK11823	446	DNA repair protein RadA; Provisional	98.3
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	98.3
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.29
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.28
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.28
PRK13764	602	ATPase; Provisional	98.26
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.26
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.25
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.25
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.24

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-59  Score=406.13  Aligned_cols=220  Identities=22%  Similarity=0.346  Sum_probs=191.4

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+|+|+         +..+|++||++|++||+++|+||||||||||||||+||..|++|+|.++|..+.... 
T Consensus         1 ~mi~i~~l~K~fg---------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-   70 (240)
T COG1126           1 MMIEIKNLSKSFG---------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-   70 (240)
T ss_pred             CeEEEEeeeEEeC---------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-
Confidence            3799999999994         578999999999999999999999999999999999999999999999997543221 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                           +    -..+|+.+++++|++.+++.+++-+++ .+   ..+.++    +++.++|+.+|+.  .+.+|.+|||||
T Consensus        71 -----~----~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQ  141 (240)
T COG1126          71 -----D----ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQ  141 (240)
T ss_pred             -----h----HHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHH
Confidence                 1    124678899998888888888876543 22   123333    3456788889986  478999999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||||||||+.+|+++|+|||||+|||+...++++.+++++++ |.|+|+|||++.|+..+||||++|++|++++.|++
T Consensus       142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p  220 (240)
T COG1126         142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP  220 (240)
T ss_pred             HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCH
Confidence            99999999999999999999999999999999999999999865 99999999999999999999999999999999999


Q ss_pred             hHHHHhhhhh
Q 018938          259 DKVKEASKLS  268 (348)
Q Consensus       259 ~~~~~~~~~~  268 (348)
                      ++++.++...
T Consensus       221 ~~~f~~p~~~  230 (240)
T COG1126         221 EEFFDNPKSE  230 (240)
T ss_pred             HHHhcCCCCH
Confidence            9999876654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-55  Score=390.78  Aligned_cols=220  Identities=24%  Similarity=0.341  Sum_probs=197.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||||.|+         ++.+++|+||+|++||+++++|||||||||+||+|++++.|++|+|.++|+++....  
T Consensus         1 MI~~~nvsk~y~---------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d--   69 (309)
T COG1125           1 MIEFENVSKRYG---------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD--   69 (309)
T ss_pred             CceeeeeehhcC---------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCC--
Confidence            589999999994         578999999999999999999999999999999999999999999999998764321  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhc---cCCCCH----HHHHHHHHHcCCC----cCccCCCCCHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VAGIDP----QRRAELIKVLDID----LSWRMHKVSDGQ  178 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~l~~l~l~----~~~~~~~LSgGq  178 (348)
                               ..++|+.++|+-|+..+++.+++.+++..   +.+|++    +++.++++.++++    .+++|++|||||
T Consensus        70 ---------~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQ  140 (309)
T COG1125          70 ---------PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQ  140 (309)
T ss_pred             ---------HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcch
Confidence                     23578899999888888888888776532   234554    4567899999996    368999999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      +|||.+||||+.+|++||+||||++|||.+|.++.+.+.++.++.|+|||+||||++++.+++|||++|++|+++..++|
T Consensus       141 QQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P  220 (309)
T COG1125         141 QQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTP  220 (309)
T ss_pred             hhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhhhh
Q 018938          259 DKVKEASKLSL  269 (348)
Q Consensus       259 ~~~~~~~~~~~  269 (348)
                      +++..++....
T Consensus       221 ~~il~~Pan~F  231 (309)
T COG1125         221 DEILANPANDF  231 (309)
T ss_pred             HHHHhCccHHH
Confidence            99998776543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=2.5e-55  Score=398.54  Aligned_cols=217  Identities=23%  Similarity=0.413  Sum_probs=186.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+         ++++|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|.++|+++..-.  
T Consensus         2 ~L~~~~ls~~y~---------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~--   70 (258)
T COG1120           2 MLEVENLSFGYG---------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS--   70 (258)
T ss_pred             eeEEEEEEEEEC---------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC--
Confidence            689999999994         578999999999999999999999999999999999999999999999998764321  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-------CCCC---HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-------AGID---PQRRAELIKVLDID--LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~---~~~~~~~l~~l~l~--~~~~~~~LSg  176 (348)
                               ..++.+.++|++|.......+++.+.. ++.       ..++   .+.+.++++.+++.  .++.+.+|||
T Consensus        71 ---------~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSG  141 (258)
T COG1120          71 ---------PKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSG  141 (258)
T ss_pred             ---------HHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccCh
Confidence                     234567788887776555555555433 221       1112   23467788999986  4788999999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||.|||||+++|++|||||||++||..++.+++++++++++++|+|||+|+||++.+.++||++++|++|++++.|
T Consensus       142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G  221 (258)
T COG1120         142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG  221 (258)
T ss_pred             hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence            99999999999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             ChhHHHHhhh
Q 018938          257 PMDKVKEASK  266 (348)
Q Consensus       257 ~~~~~~~~~~  266 (348)
                      +|+++.+...
T Consensus       222 ~p~evlT~e~  231 (258)
T COG1120         222 TPEEVLTEEN  231 (258)
T ss_pred             CcchhcCHHH
Confidence            9999887543

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-54  Score=394.43  Aligned_cols=231  Identities=23%  Similarity=0.337  Sum_probs=195.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||++++|+|.|... +   .+...+|+||||+|++||++||||.||||||||+|||.+|..|++|+|.++|.++..-.. 
T Consensus         1 mI~l~~vsK~~~~~-~---~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~-   75 (339)
T COG1135           1 MIELENVSKTFGQT-G---TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSE-   75 (339)
T ss_pred             CeEEEeeeeeeccC-C---CCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCCh-
Confidence            58999999999642 1   024679999999999999999999999999999999999999999999999987543211 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                         ..    -+..|+.+++++|.+.+....++.+ +.+.+  .+.++    .++.++++.+|+.  .+++|.+|||||||
T Consensus        76 ---~~----Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQ  148 (339)
T COG1135          76 ---AE----LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQ  148 (339)
T ss_pred             ---HH----HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhh
Confidence               01    1246788999988777766555554 43332  23332    4567889999996  46799999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++||.|||||+|||++.+.++++|+++.++.|.||++|||.|+.+.++||||++|++|++++.|+..+
T Consensus       149 RVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~  228 (339)
T COG1135         149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSE  228 (339)
T ss_pred             HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHH
Q 018938          261 VKEASKLSLMRT  272 (348)
Q Consensus       261 ~~~~~~~~~~~~  272 (348)
                      ++.++....++.
T Consensus       229 vF~~Pk~~~t~~  240 (339)
T COG1135         229 VFANPKHAITQE  240 (339)
T ss_pred             hhcCcchHHHHH
Confidence            999887765543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-53  Score=375.86  Aligned_cols=225  Identities=24%  Similarity=0.369  Sum_probs=183.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||++.|+...     ...++|++|||+|.+||++||+|+||||||||.++|+|+.+|+.|+|.++|........
T Consensus         2 ~~l~v~nl~~~y~~~~-----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~   76 (252)
T COG1124           2 TLLSVRNLSIVYGGGK-----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR   76 (252)
T ss_pred             ceEEEeceEEEecCCc-----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCcccc
Confidence            4799999999996410     01259999999999999999999999999999999999999999999999975432111


Q ss_pred             ccccCcccccchhhhhhhhhcCCC--ccccccchHHHHHhc---cCCCC--HHHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFE--VPIQMDVSAEKMIFG---VAGID--PQRRAELIKVLDID---LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~--~~~~~~~l~~l~l~---~~~~~~~LSgGq  178 (348)
                      .          ..+.+.+.+++|+  ..+++..++...+.-   ..+.+  ..++.++++.+|+.   ++++|++|||||
T Consensus        77 ~----------~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ  146 (252)
T COG1124          77 A----------KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQ  146 (252)
T ss_pred             c----------hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhH
Confidence            0          0122334444333  334555666554421   11222  34578899999997   478999999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      +|||||||||+.+|++||||||||+||+..+.+++++|.+++++++.|+|+||||+..+..+||||++|++|++++.++.
T Consensus       147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~  226 (252)
T COG1124         147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT  226 (252)
T ss_pred             HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeech
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhhh
Q 018938          259 DKVKEASKLS  268 (348)
Q Consensus       259 ~~~~~~~~~~  268 (348)
                      +++...+.+.
T Consensus       227 ~~l~~~~~h~  236 (252)
T COG1124         227 EELLSHPSHP  236 (252)
T ss_pred             hhhhcCCccH
Confidence            9988764443

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-52  Score=379.63  Aligned_cols=213  Identities=23%  Similarity=0.438  Sum_probs=177.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|++        . ++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.++|........
T Consensus         3 ~~i~v~nl~v~y~~--------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~   73 (254)
T COG1121           3 PMIEVENLTVSYGN--------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK   73 (254)
T ss_pred             cEEEEeeeEEEECC--------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc
Confidence            57999999999952        3 79999999999999999999999999999999999999999999999975422110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHHh-cc---CC-------CCHHHHHHHHHHcCCC--cCccCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIF-GV---AG-------IDPQRRAELIKVLDID--LSWRMHK  173 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~---~~-------~~~~~~~~~l~~l~l~--~~~~~~~  173 (348)
                                    +..++|++|...  ..+.+++.++.. +.   .+       .+.+.+.++|+.+|+.  .++.+.+
T Consensus        74 --------------~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~  139 (254)
T COG1121          74 --------------RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE  139 (254)
T ss_pred             --------------CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccc
Confidence                          123555555332  223455666542 21   11       1236678899999986  4788999


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||+|||.|||||+++|++|||||||+|+|+.++..|+++|+++.++ |+|||+||||++.+..+||+|++| +++++
T Consensus       140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~L-n~~~~  217 (254)
T COG1121         140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICL-NRHLI  217 (254)
T ss_pred             cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEE-cCeeE
Confidence            9999999999999999999999999999999999999999999999877 999999999999999999999999 57788


Q ss_pred             eecChhHHHHhhh
Q 018938          254 LAMPMDKVKEASK  266 (348)
Q Consensus       254 ~~g~~~~~~~~~~  266 (348)
                      +.|+++++.+.+.
T Consensus       218 ~~G~~~~~~~~~~  230 (254)
T COG1121         218 ASGPPEEVLTEEN  230 (254)
T ss_pred             eccChhhccCHHH
Confidence            9999999876543

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1e-52  Score=370.89  Aligned_cols=220  Identities=18%  Similarity=0.277  Sum_probs=187.9

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .+.|++++|+++|         |++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|.++|.++..-.
T Consensus         6 ~~~I~vr~v~~~f---------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls   76 (263)
T COG1127           6 EPLIEVRGVTKSF---------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLS   76 (263)
T ss_pred             cceEEEeeeeeec---------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccC
Confidence            5689999999999         4689999999999999999999999999999999999999999999999998753321


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CCCCHHHH----HHHHHHcCCC---cCccCCCCCH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AGIDPQRR----AELIKVLDID---LSWRMHKVSD  176 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~----~~~l~~l~l~---~~~~~~~LSg  176 (348)
                      ..        -....++++++++|+-.++..+++.++. +.+   ...++..+    ..-++.+|+.   .+.+|.+|||
T Consensus        77 ~~--------~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSG  148 (263)
T COG1127          77 EE--------ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSG  148 (263)
T ss_pred             HH--------HHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcc
Confidence            10        0124567788888887788777766543 322   22333333    3346667875   4678999999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||++|++||||++.+|++|++||||+||||.+...+-++|+++.+..|.|+++||||++.+..+|||++++.+|+|++.|
T Consensus       149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~G  228 (263)
T COG1127         149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG  228 (263)
T ss_pred             hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +++++.+.
T Consensus       229 t~~el~~s  236 (263)
T COG1127         229 TPEELLAS  236 (263)
T ss_pred             CHHHHHhC
Confidence            99998864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-52  Score=372.59  Aligned_cols=200  Identities=25%  Similarity=0.375  Sum_probs=172.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+++++++++.|+         ...+|+|+||+|.+||+++|+||||||||||||+|+|+..|++|+|.++|..+..   
T Consensus         2 ~~l~i~~v~~~f~---------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~---   69 (248)
T COG1116           2 ALLEIEGVSKSFG---------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG---   69 (248)
T ss_pred             ceEEEEeeEEEeC---------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC---
Confidence            3689999999994         4789999999999999999999999999999999999999999999999986521   


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                                   ....++|++|+..+.++.++.++. +++.  +..    .+++.++++.+|+.  .+++|++||||||
T Consensus        70 -------------p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMr  136 (248)
T COG1116          70 -------------PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMR  136 (248)
T ss_pred             -------------CCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHH
Confidence                         112455666666777777766543 3332  111    24567889999996  5789999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEe
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQ  253 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~  253 (348)
                      |||+|||||+.+|++|||||||++||..++..+.+.|.++.++.++||++||||++++..++|||++|.+  |+|.
T Consensus       137 QRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~  212 (248)
T COG1116         137 QRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG  212 (248)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999  5553

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-52  Score=368.98  Aligned_cols=220  Identities=22%  Similarity=0.336  Sum_probs=186.4

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||++.|+        +++.+|++|||+|++||+++||||||||||||||+|+|+..|++|+|.++|..+.....
T Consensus         2 ~~i~~~nl~k~yp--------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~   73 (258)
T COG3638           2 MMIEVKNLSKTYP--------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKG   73 (258)
T ss_pred             ceEEEeeeeeecC--------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccch
Confidence            4799999999996        46889999999999999999999999999999999999999999999999975432211


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc-----------CCCCH---HHHHHHHHHcCCC--cCccC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV-----------AGIDP---QRRAELIKVLDID--LSWRM  171 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~---~~~~~~l~~l~l~--~~~~~  171 (348)
                              .--..+++.++|.+|++.+...+++.++ ..+.           ..++.   ..+-+.|+.+|+.  ..++.
T Consensus        74 --------k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra  145 (258)
T COG3638          74 --------KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA  145 (258)
T ss_pred             --------HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh
Confidence                    1123577889999888777666655432 2211           11222   3345678888875  35788


Q ss_pred             CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      .+|||||+|||+|||||+++|++||.|||+++|||.+.+.+++.|++++++.|.|||++.|+++.+.+|||||+-|++|+
T Consensus       146 ~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~  225 (258)
T COG3638         146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR  225 (258)
T ss_pred             ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecChhHHHHh
Q 018938          252 LQLAMPMDKVKEA  264 (348)
Q Consensus       252 i~~~g~~~~~~~~  264 (348)
                      |+++|++.++.+.
T Consensus       226 ivfDg~~~el~~~  238 (258)
T COG3638         226 IVFDGPASELTDE  238 (258)
T ss_pred             EEEeCChhhhhHH
Confidence            9999999986553

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=6.7e-52  Score=391.54  Aligned_cols=217  Identities=23%  Similarity=0.372  Sum_probs=192.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      +.|+++||+|+|+         +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++..-..
T Consensus         4 ~~l~i~~v~k~yg---------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp   74 (352)
T COG3842           4 PALEIRNVSKSFG---------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP   74 (352)
T ss_pred             ceEEEEeeeeecC---------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh
Confidence            5799999999994         5789999999999999999999999999999999999999999999999998754221


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC-C--CC-H---HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA-G--ID-P---QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~-~---~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                   .++.+++++|+..+++.+++.++ .|++. .  .. .   +++.++++.+++.  .++++++|||||
T Consensus        75 -------------~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQ  141 (352)
T COG3842          75 -------------EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQ  141 (352)
T ss_pred             -------------hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHH
Confidence                         34677888888888888887654 56654 1  12 1   3677888888886  478999999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++||||||.|+||...|.++...++++.++.|.|.|+||||.+++..++|||++|++|+|...|+|
T Consensus       142 qQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP  221 (352)
T COG3842         142 QQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTP  221 (352)
T ss_pred             HHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhh
Q 018938          259 DKVKEASKL  267 (348)
Q Consensus       259 ~~~~~~~~~  267 (348)
                      +++...+..
T Consensus       222 ~eiY~~P~~  230 (352)
T COG3842         222 EEIYERPAT  230 (352)
T ss_pred             HHHhhCcch
Confidence            999887654

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1e-50  Score=380.92  Aligned_cols=279  Identities=23%  Similarity=0.372  Sum_probs=214.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..++++||+|+|+.        ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.++|.+....  
T Consensus         3 ~~i~~~~l~k~~~~--------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--   72 (293)
T COG1131           3 EVIEVRNLTKKYGG--------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--   72 (293)
T ss_pred             ceeeecceEEEeCC--------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--
Confidence            36899999999941        47899999999999999999999999999999999999999999999999875432  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCC----CHHHHHHHHHHcCCCc--CccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGI----DPQRRAELIKVLDIDL--SWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~l~l~~--~~~~~~LSgGqr  179 (348)
                                ...+++.++|+++...++..+++.+++.   .+.+.    ..+++.++++.+++..  ++++.+||+|||
T Consensus        73 ----------~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~k  142 (293)
T COG1131          73 ----------PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMK  142 (293)
T ss_pred             ----------HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHH
Confidence                      1235667888888887888888877542   22222    2457789999999975  677999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      ||++||+||+++|++|||||||+||||.++..++++|++++++.|+|||++||.+++++.+||+|++|++|++++.|+++
T Consensus       143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~  222 (293)
T COG1131         143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPE  222 (293)
T ss_pred             HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence            99999999999999999999999999999999999999998765589999999999999999999999999999999988


Q ss_pred             HHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHHHHHHhhccccccccceeecCcccc
Q 018938          260 KVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVRVMNNGWAAGRLHSTVAGEENF  339 (348)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~  339 (348)
                      ++........      .............   .......    ..+   ..........+...+.....+.....++|++
T Consensus       223 ~l~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  286 (293)
T COG1131         223 ELKEKFGGKG------VIELEPERLELAE---LLEGLKL----VKG---EEELAEILEALLEEGVKIESIEVKEPSLEDV  286 (293)
T ss_pred             HHHHhhccCc------eEEEecccccchh---hhhcccc----ccc---chhHHHHHHHHHHcCCceeeeecCCCCHHHH
Confidence            8765322100      0000000000000   0000000    000   1223445556667777777888888999999


Q ss_pred             cccc
Q 018938          340 VLST  343 (348)
Q Consensus       340 ~~~~  343 (348)
                      |+..
T Consensus       287 ~~~~  290 (293)
T COG1131         287 FLEL  290 (293)
T ss_pred             HHHH
Confidence            9754

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-51  Score=355.06  Aligned_cols=215  Identities=25%  Similarity=0.397  Sum_probs=185.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||++.+++|+|+.        ...+++||||+++.||++||+|||||||||+||+|++++.|++|.|+++|.+...++  
T Consensus         1 Ml~v~~l~K~y~~--------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p--   70 (245)
T COG4555           1 MLEVTDLTKSYGS--------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP--   70 (245)
T ss_pred             CeeeeehhhhccC--------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh--
Confidence            5899999999963        345999999999999999999999999999999999999999999999997654322  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhc---cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                ...++.++..+.+..++..+++++++..   +.+..    ..+.+++.+.|++.  .++++.+||.||||
T Consensus        71 ----------~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kq  140 (245)
T COG4555          71 ----------SFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQ  140 (245)
T ss_pred             ----------HHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHH
Confidence                      2356677777777778888888775422   12222    34567788888885  58899999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+++|++++|||||||||..++..+.++++++. +.|++||++||++++++.+||+|+++++|++++.|++++
T Consensus       141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~  219 (245)
T COG4555         141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEA  219 (245)
T ss_pred             HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHH
Confidence            9999999999999999999999999999999999999985 459999999999999999999999999999999999998


Q ss_pred             HHHhh
Q 018938          261 VKEAS  265 (348)
Q Consensus       261 ~~~~~  265 (348)
                      +....
T Consensus       220 l~~r~  224 (245)
T COG4555         220 LDART  224 (245)
T ss_pred             HHHHH
Confidence            87643

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.2e-51  Score=382.58  Aligned_cols=217  Identities=25%  Similarity=0.369  Sum_probs=191.3

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+|.|++         ..+|+++||+|+.||+++|+||||||||||||+|+|++.|++|+|.++|.++..-.+
T Consensus         2 ~~i~l~~v~K~yg~---------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P   72 (338)
T COG3839           2 AELELKNVRKSFGS---------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP   72 (338)
T ss_pred             cEEEEeeeEEEcCC---------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh
Confidence            36999999999952         239999999999999999999999999999999999999999999999997643211


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                                   ..+.+++++|+..+++.+++.++ .+++.  +..    .+++.++.+.+++.  ++++|.+||||||
T Consensus        73 -------------~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQr  139 (338)
T COG3839          73 -------------EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQR  139 (338)
T ss_pred             -------------hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhH
Confidence                         24678888888888888887654 45543  222    35677889999987  5899999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|+++|||||+|+||+..+..+...|+++.++.|.|+|+||||..++..++|||++|++|+|...|++.
T Consensus       140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~  219 (338)
T COG3839         140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPL  219 (338)
T ss_pred             HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhh
Q 018938          260 KVKEASKL  267 (348)
Q Consensus       260 ~~~~~~~~  267 (348)
                      ++...+..
T Consensus       220 ely~~P~n  227 (338)
T COG3839         220 ELYERPAN  227 (338)
T ss_pred             HHhhCccc
Confidence            99876654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.9e-50  Score=359.89  Aligned_cols=211  Identities=26%  Similarity=0.400  Sum_probs=174.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +++++||+|.|+...     ....+|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.++..-.. 
T Consensus         1 ~i~~~~v~k~y~~~~-----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~-   74 (226)
T COG1136           1 MIELKNVSKIYGLGG-----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSE-   74 (226)
T ss_pred             CcEEeeeEEEeccCC-----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCH-
Confidence            367999999996411     12579999999999999999999999999999999999999999999999976543211 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCCC----HHHHHHHHHHcCCC--cC-ccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGID----PQRRAELIKVLDID--LS-WRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~l~l~--~~-~~~~~LSgGqr  179 (348)
                         ..   .....++.++|++|+..+.+.+++.+++.   .+.+..    .++..++++.+|+.  .. ++|.+||||||
T Consensus        75 ---~~---~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqq  148 (226)
T COG1136          75 ---KE---LAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQ  148 (226)
T ss_pred             ---HH---HHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHH
Confidence               00   11123466899988888888888776542   122222    34566788888986  23 77999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||||||+.+|++||+||||.+||.++...++++|++++++.|.|||+||||...+. +|||++.|.+|++.
T Consensus       149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~  221 (226)
T COG1136         149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE  221 (226)
T ss_pred             HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence            99999999999999999999999999999999999999999888999999999988776 79999999999943

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.3e-51  Score=369.31  Aligned_cols=220  Identities=27%  Similarity=0.425  Sum_probs=189.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|.++|+++.|+         ...+++||||+|+.||.++|+||||||||||||+|+|++.|+.|.|.++|+..++....
T Consensus         2 ~i~i~~~~~~~~---------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~   72 (345)
T COG1118           2 SIRINNVKKRFG---------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL   72 (345)
T ss_pred             ceeehhhhhhcc---------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc
Confidence            589999999994         57899999999999999999999999999999999999999999999999855432221


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHH-HHHhccCC----C----CHHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGVAG----I----DPQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~----~~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                      .          ...++++|++|...++..+++. ++.|++..    .    .+.++.++++.+.++  .+++|.+|||||
T Consensus        73 ~----------~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQ  142 (345)
T COG1118          73 A----------VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQ  142 (345)
T ss_pred             c----------hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHH
Confidence            1          1245688887776677777765 45566521    1    134567888888886  478999999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++||||||+++||...+.++..+|+++.++.|.|.++||||.+++.++||||++|++|+|...|++
T Consensus       143 rQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p  222 (345)
T COG1118         143 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPP  222 (345)
T ss_pred             HHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCH
Confidence            99999999999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             hHHHHhhhhh
Q 018938          259 DKVKEASKLS  268 (348)
Q Consensus       259 ~~~~~~~~~~  268 (348)
                      +++...+...
T Consensus       223 ~ev~~~P~s~  232 (345)
T COG1118         223 DEVYDHPASR  232 (345)
T ss_pred             HHHhcCCCcc
Confidence            9998876643

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-50  Score=364.65  Aligned_cols=218  Identities=30%  Similarity=0.444  Sum_probs=183.9

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      +++++++++++|++       + ..+|+++||+|++||+++|+|+||||||||+++++|+++|++|.|.++|.+......
T Consensus         2 ~~i~~~~l~~~y~~-------~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~   73 (235)
T COG1122           2 RMIEAENLSFRYPG-------R-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS   73 (235)
T ss_pred             ceEEEEEEEEEcCC-------C-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhh
Confidence            47899999999963       2 689999999999999999999999999999999999999999999999986532110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCc--cccccchHHHHHhccC--CCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMIFGVA--GIDP----QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                ...+++.+++++|.+  .+......++..|+..  +.+.    .++.++++.+++.  .++.+++|||||
T Consensus        74 ----------~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGq  143 (235)
T COG1122          74 ----------LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQ  143 (235)
T ss_pred             ----------HHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcc
Confidence                      123456667664433  3344455666766643  2332    3566788888886  478899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+||.+|+.+|++||||||||+||+.++..++++++++.++.|+|||++|||++++..+||++++|++|+++.+|++
T Consensus       144 kqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p  223 (235)
T COG1122         144 KQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDP  223 (235)
T ss_pred             eeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCH
Confidence            99999999999999999999999999999999999999999887789999999999999999999999999999999999


Q ss_pred             hHHHHh
Q 018938          259 DKVKEA  264 (348)
Q Consensus       259 ~~~~~~  264 (348)
                      .++++.
T Consensus       224 ~~i~~~  229 (235)
T COG1122         224 AEIFND  229 (235)
T ss_pred             HHHhhh
Confidence            888754

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=9.6e-50  Score=377.15  Aligned_cols=214  Identities=21%  Similarity=0.335  Sum_probs=180.7

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+|+|+         ++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.... 
T Consensus         6 ~~i~i~~l~k~~~---------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-   75 (306)
T PRK13537          6 APIDFRNVEKRYG---------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-   75 (306)
T ss_pred             ceEEEEeEEEEEC---------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-
Confidence            5799999999994         467999999999999999999999999999999999999999999999998653211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh--c-cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF--G-VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                                 ...++.++|+++...++..+++.+++.  . ..+..    ..++.++++.+++.  .++++.+||||||
T Consensus        76 -----------~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  144 (306)
T PRK13537         76 -----------RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMK  144 (306)
T ss_pred             -----------HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHH
Confidence                       123456777776666555566655432  1 22222    13456788888886  3678899999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+||+||+++|++|||||||+|||+.++..++++|+++.+ .|+|||++||++++++.+||||++|++|++++.|+++
T Consensus       145 qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~  223 (306)
T PRK13537        145 RRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPH  223 (306)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999999864 5999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 018938          260 KVKEA  264 (348)
Q Consensus       260 ~~~~~  264 (348)
                      ++...
T Consensus       224 ~l~~~  228 (306)
T PRK13537        224 ALIES  228 (306)
T ss_pred             HHHhc
Confidence            98654

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.8e-50  Score=367.53  Aligned_cols=271  Identities=21%  Similarity=0.277  Sum_probs=205.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~~  104 (348)
                      +|+++||+.+|...+     +...+++||||+|++||++||+|+|||||||+.+.|+|++++     .+|+|.++|+++.
T Consensus         1 lL~v~nL~v~f~~~~-----g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~   75 (316)
T COG0444           1 LLEVKNLSVSFPTDA-----GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL   75 (316)
T ss_pred             CceEeeeEEEEecCC-----ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccc
Confidence            378999999996421     346799999999999999999999999999999999999863     4578888887643


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCc--cccccchHHH----HHhccCCC-C----HHHHHHHHHHcCCC-----cC
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEK----MIFGVAGI-D----PQRRAELIKVLDID-----LS  168 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~-~----~~~~~~~l~~l~l~-----~~  168 (348)
                      .-...    ..   ..-..+.+++++|+.  .+++.++...    .+...... .    .+++.++++.+++.     .+
T Consensus        76 ~l~~~----~~---~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~  148 (316)
T COG0444          76 SLSEK----EL---RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLK  148 (316)
T ss_pred             cCCHH----HH---HhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHh
Confidence            22110    00   001124566665542  2333333322    11111111 1    23566788889986     25


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      .+|++|||||+|||.||.||+.+|++||.||||++||...+.+++++|+++.++.|.|+|+||||+..+.++||||+||+
T Consensus       149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMY  228 (316)
T COG0444         149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY  228 (316)
T ss_pred             hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEE
Confidence            78999999999999999999999999999999999999999999999999999899999999999999999999999999


Q ss_pred             CCEEeeecChhHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHHHH
Q 018938          249 HGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAV  317 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (348)
                      .|+|++.|+.++++.++.+.+.+.+...+...     ..+.....+..|.....+.||+|.++.+.+..
T Consensus       229 aG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~~-----~~~l~~ipG~~p~l~~~p~GC~F~pRC~~a~~  292 (316)
T COG0444         229 AGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRL-----GERLPPIPGSPPSLLNPPKGCRFHPRCPYAME  292 (316)
T ss_pred             CcEEEEeCCHHHHhcCCCChHHHHHHHhCccc-----cCCcCCCCCCCCcccCCCCCCccccccchhHh
Confidence            99999999999999999888776654444321     11112223445666677889999988776665

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.3e-49  Score=380.42  Aligned_cols=225  Identities=20%  Similarity=0.263  Sum_probs=182.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+|+|+..+     +..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... 
T Consensus         1 mI~~~~lsk~y~~~~-----~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~-   74 (343)
T TIGR02314         1 MIKLSNITKVFHQGT-----KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSN-   74 (343)
T ss_pred             CEEEEEEEEEECCCC-----cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH-
Confidence            489999999995310     12479999999999999999999999999999999999999999999999986532110 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                         ..+    ...++.++|+++...++...++.++ .+..  .+.+    .+++.++++.+++.  .++++.+|||||||
T Consensus        75 ---~~l----~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQ  147 (343)
T TIGR02314        75 ---SEL----TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQ  147 (343)
T ss_pred             ---HHH----HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence               000    1134567777666555544455433 2222  2222    23456788889986  47789999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||+|||+++.+.++||+|++|++|++++.|++++
T Consensus       148 RV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~  227 (343)
T TIGR02314       148 RVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE  227 (343)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999999987779999999999999999999999999999999999999


Q ss_pred             HHHhhhh
Q 018938          261 VKEASKL  267 (348)
Q Consensus       261 ~~~~~~~  267 (348)
                      ++..+..
T Consensus       228 v~~~p~~  234 (343)
T TIGR02314       228 IFSHPKT  234 (343)
T ss_pred             HHcCCCc
Confidence            8765433

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=2.2e-49  Score=379.02  Aligned_cols=216  Identities=22%  Similarity=0.348  Sum_probs=180.8

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      ..++|+++||+|+|+         ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus        38 ~~~~i~i~nl~k~y~---------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~  108 (340)
T PRK13536         38 STVAIDLAGVSKSYG---------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR  108 (340)
T ss_pred             CceeEEEEEEEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc
Confidence            346899999999994         46799999999999999999999999999999999999999999999999865321


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh--c-cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF--G-VAGID----PQRRAELIKVLDID--LSWRMHKVSDG  177 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgG  177 (348)
                      .            ...++.++|+++...++..+++.+++.  . ..+..    .++..++++.+++.  .++++.+||||
T Consensus       109 ~------------~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G  176 (340)
T PRK13536        109 A------------RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGG  176 (340)
T ss_pred             h------------HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHH
Confidence            0            123445677766655555555554331  1 12222    13355778888886  47789999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+||+||+++|++|||||||+||||.++..++++|+++.+ .|.|||++||+++++..+||+|++|++|++++.|+
T Consensus       177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~  255 (340)
T PRK13536        177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGR  255 (340)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence            99999999999999999999999999999999999999999975 59999999999999999999999999999999999


Q ss_pred             hhHHHHh
Q 018938          258 MDKVKEA  264 (348)
Q Consensus       258 ~~~~~~~  264 (348)
                      ++++...
T Consensus       256 ~~~l~~~  262 (340)
T PRK13536        256 PHALIDE  262 (340)
T ss_pred             HHHHHhh
Confidence            9998653

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-49  Score=377.81  Aligned_cols=216  Identities=23%  Similarity=0.356  Sum_probs=183.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+        +++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++....  
T Consensus         3 ~l~i~~l~~~~~--------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~--   72 (356)
T PRK11650          3 GLKLQAVRKSYD--------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE--   72 (356)
T ss_pred             EEEEEeEEEEeC--------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC--
Confidence            699999999993        1367999999999999999999999999999999999999999999999998653211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                 ..++.++|++++..+++.+++.+++ ++..  +..    ..++.++++.+++.  .++++.+|||||||
T Consensus        73 -----------~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~Q  141 (356)
T PRK11650         73 -----------PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQ  141 (356)
T ss_pred             -----------HHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHH
Confidence                       1124567776666666666665543 3321  222    23456788889986  47889999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||++||+.++..+.+.|+++.++.|.|+|+||||++++..+||++++|++|+++..|++++
T Consensus       142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~  221 (356)
T PRK11650        142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVE  221 (356)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence            99999999999999999999999999999999999999987779999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 018938          261 VKEASK  266 (348)
Q Consensus       261 ~~~~~~  266 (348)
                      +...+.
T Consensus       222 ~~~~p~  227 (356)
T PRK11650        222 VYEKPA  227 (356)
T ss_pred             HHhCCc
Confidence            877654

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-49  Score=376.46  Aligned_cols=216  Identities=22%  Similarity=0.328  Sum_probs=183.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++.... 
T Consensus         5 ~~l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-   74 (351)
T PRK11432          5 NFVVLKNITKRFG---------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-   74 (351)
T ss_pred             cEEEEEeEEEEEC---------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-
Confidence            5899999999994         467999999999999999999999999999999999999999999999998653211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                                  ..++.++|++++..+++.+++.++ .++..  +..    .+++.++++.+++.  .++++.+||||||
T Consensus        75 ------------~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~  142 (351)
T PRK11432         75 ------------IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQ  142 (351)
T ss_pred             ------------HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence                        123456777666666666665543 33322  222    23566788888886  4788999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|++|||||||++||+..+.++.+.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++
T Consensus       143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~  222 (351)
T PRK11432        143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQ  222 (351)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence            99999999999999999999999999999999999999998777999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 018938          260 KVKEASK  266 (348)
Q Consensus       260 ~~~~~~~  266 (348)
                      ++...+.
T Consensus       223 ~~~~~p~  229 (351)
T PRK11432        223 ELYRQPA  229 (351)
T ss_pred             HHHhCCC
Confidence            9877654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.2e-49  Score=376.56  Aligned_cols=216  Identities=24%  Similarity=0.342  Sum_probs=184.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ...+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++.... 
T Consensus         3 ~~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-   72 (353)
T TIGR03265         3 PYLSIDNIRKRFG---------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-   72 (353)
T ss_pred             cEEEEEEEEEEeC---------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-
Confidence            4799999999994         367999999999999999999999999999999999999999999999998653211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                                  ..++.++|++++..+++.+++.+++ ++..  +.+    ..++.++++.+++.  .++++.+||||||
T Consensus        73 ------------~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~  140 (353)
T TIGR03265        73 ------------PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQ  140 (353)
T ss_pred             ------------HHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHH
Confidence                        1234577776666666666665443 3322  222    24567889999986  4788999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++
T Consensus       141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~  220 (353)
T TIGR03265       141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQ  220 (353)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence            99999999999999999999999999999999999999998777999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 018938          260 KVKEASK  266 (348)
Q Consensus       260 ~~~~~~~  266 (348)
                      ++.+.+.
T Consensus       221 ~~~~~p~  227 (353)
T TIGR03265       221 EIYRHPA  227 (353)
T ss_pred             HHHhCCC
Confidence            9987654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=1e-48  Score=373.41  Aligned_cols=282  Identities=19%  Similarity=0.232  Sum_probs=200.6

Q ss_pred             CCCeEEEeceEEEecCCCCC----CCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           27 SKPTVEINALKFTYPGIDGH----PPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~----~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      ..++|+++||+++|+...+.    ...+...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus         5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~   84 (331)
T PRK15079          5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD   84 (331)
T ss_pred             CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence            34689999999999631100    00013579999999999999999999999999999999999999999999999986


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hc---c-CCCCH----HHHHHHHHHcCCC---cC
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FG---V-AGIDP----QRRAELIKVLDID---LS  168 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~---~-~~~~~----~~~~~~l~~l~l~---~~  168 (348)
                      +......    .    ...+++.++|++|+.  .+++.++..+.+ +.   . ...+.    +++.++++.+++.   .+
T Consensus        85 i~~~~~~----~----~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~  156 (331)
T PRK15079         85 LLGMKDD----E----WRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLIN  156 (331)
T ss_pred             CCcCCHH----H----HHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhc
Confidence            5321100    0    011234566665553  233344444332 11   1 11222    3456788888884   36


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +++++|||||+|||+|||||+.+|++|||||||++||+.++.+++++|+++.++.|.|||+||||++++..+||+|++|+
T Consensus       157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~  236 (331)
T PRK15079        157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY  236 (331)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            78999999999999999999999999999999999999999999999999987679999999999999999999999999


Q ss_pred             CCEEeeecChhHHHHhhhhhhHHHHHHHhhhhhHHHHH-HHHHHHhCCCCCcccCCCCCccccChHHHH
Q 018938          249 HGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERK-RRRERKASGLPEFDKQIHGSRVTGDPAQAA  316 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (348)
                      +|++++.|+++++...+.+.+...+............. .......+..|.....+.||++..+.+...
T Consensus       237 ~G~ive~g~~~~i~~~~~~py~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~gc~f~~rc~~~~  305 (331)
T PRK15079        237 LGHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLERNKTIQLLEGELPSPINPPSGCVFRTRCPIAG  305 (331)
T ss_pred             CCEEEEEcCHHHHHcCCCCHHHHHHHhhCCCcccccccccccccCCCCCCCCcCCCCCCCCCCCCcchh
Confidence            99999999999998765554433222211110000000 000011233444445567888887655433

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-49  Score=343.90  Aligned_cols=222  Identities=23%  Similarity=0.286  Sum_probs=181.5

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC-----ceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP-----EMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~-----G~i~i~G~~  102 (348)
                      .+.++++||++.|         |.+.+|++||++|+++++++||||||||||||||++..+....+     |+|.++|++
T Consensus         5 ~~~~~~~~l~~yY---------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~n   75 (253)
T COG1117           5 IPAIEVRDLNLYY---------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKN   75 (253)
T ss_pred             cceeEecceeEEE---------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCee
Confidence            3579999999999         46889999999999999999999999999999999999877666     788888887


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CCCCH----HHHHHHHHHcCCC------cCcc
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AGIDP----QRRAELIKVLDID------LSWR  170 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~l~~l~l~------~~~~  170 (348)
                      ++...       +  ....+|+++++++|.+.+++....+++.++.  .+...    +.+++.|+...|.      +++.
T Consensus        76 i~~~~-------~--d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s  146 (253)
T COG1117          76 IYDPK-------V--DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKS  146 (253)
T ss_pred             ccCCC-------C--CHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCC
Confidence            65431       1  1235788999998777666633345555553  23222    2233344443331      4566


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      ...||||||||++|||||+.+|+|||||||||+|||.+..+|.++|.++.+  .-|||+|||+|..+.+++|+++++..|
T Consensus       147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G  224 (253)
T COG1117         147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLG  224 (253)
T ss_pred             ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhccc
Confidence            788999999999999999999999999999999999999999999999974  579999999999999999999999999


Q ss_pred             EEeeecChhHHHHhhhhhh
Q 018938          251 KLQLAMPMDKVKEASKLSL  269 (348)
Q Consensus       251 ~i~~~g~~~~~~~~~~~~~  269 (348)
                      ++++.|++++++..+....
T Consensus       225 ~LvE~g~T~~iF~~P~~~~  243 (253)
T COG1117         225 ELVEFGPTDKIFTNPKHKR  243 (253)
T ss_pred             EEEEEcCHHhhhcCccHHH
Confidence            9999999999998776543

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-48  Score=353.70  Aligned_cols=248  Identities=23%  Similarity=0.273  Sum_probs=201.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCC-CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPG-STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g-~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      ++++++||++.|+...+ .... ...|++||||+|++||++||+|+||||||||-|+|+|++.|++|+|.+.|+++..- 
T Consensus         3 ~ll~v~~l~k~f~~~~~-~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~-   80 (268)
T COG4608           3 PLLEVKNLKKYFPVGKG-FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL-   80 (268)
T ss_pred             ceEEEeccEEEEecccc-cCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc-
Confidence            57999999999964211 0001 24799999999999999999999999999999999999999999999998753110 


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQI  184 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~l  184 (348)
                                              .                .....+++.++++.+|+.   ..+++++|||||+||++|
T Consensus        81 ------------------------~----------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I  120 (268)
T COG4608          81 ------------------------S----------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI  120 (268)
T ss_pred             ------------------------c----------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHH
Confidence                                    0                000134577888888875   478999999999999999


Q ss_pred             HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHh
Q 018938          185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  264 (348)
                      ||||+.+|+++++|||+|+||...+.+++++|.++.++.|.|.++||||+..+..+||||++|+.|+|++.|+.++++..
T Consensus       121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~  200 (268)
T COG4608         121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN  200 (268)
T ss_pred             HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHHHHH
Q 018938          265 SKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAVR  318 (348)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (348)
                      +.+.+.+.+...........+..+.....+.+|.....+.||+|+++.+.+...
T Consensus       201 p~HpYTk~Ll~a~p~~~p~~~~~~~~~~~ge~p~~~~~p~gC~f~~RCp~a~~~  254 (268)
T COG4608         201 PLHPYTKALLSAVPVPDPRLRRKRRIPLEGEVPSPINPPSGCRFHPRCPYAMEI  254 (268)
T ss_pred             CCCHHHHHHHHhCCccchhhhhhhhhhhccCCCCCCcCCcCCcccCCcchhhhh
Confidence            888777665544432211111111222345677777778899999887665554

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2e-49  Score=349.79  Aligned_cols=280  Identities=17%  Similarity=0.275  Sum_probs=216.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|++++|+|+|         |++.|++|+||++++|+++|++|||||||||++|+|+|++.|++|.|.|+|.++..    
T Consensus         2 ~L~ie~vtK~F---------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----   68 (300)
T COG4152           2 ALEIEGVTKSF---------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----   68 (300)
T ss_pred             ceEEecchhcc---------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----
Confidence            58999999999         46899999999999999999999999999999999999999999999999976421    


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH---hccCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI---FGVAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                 .....++|.+.+..++..+++.+.+   ..+.+...    .+...+++++++.  ..+++.+||.|++|
T Consensus        69 -----------~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQ  137 (300)
T COG4152          69 -----------EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQ  137 (300)
T ss_pred             -----------hhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhH
Confidence                       2345678877777777777776533   23455543    3456789999886  45689999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ++.+..+++++|+++|||||||||||.+.+.+.+.+.++. +.|.|||++||.|+.++++||++++|++|+.+..|+.++
T Consensus       138 KIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk-~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~  216 (300)
T COG4152         138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK-EEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED  216 (300)
T ss_pred             HHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH-hcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHH
Confidence            9999999999999999999999999999999999999986 569999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCC-Cccc--c-ChHHHHHHHhhccccccccceeecCc
Q 018938          261 VKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHG-SRVT--G-DPAQAAVRVMNNGWAAGRLHSTVAGE  336 (348)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~l  336 (348)
                      +.........     ++...    ..........++-.......| +++.  . +.++..-...+....+..+..+.|+|
T Consensus       217 ir~~~Gkk~~-----~ies~----~s~eeL~~ipgi~~~~~~~~G~~~i~ie~e~~a~~ifq~~a~~g~i~~Fe~~~PsL  287 (300)
T COG4152         217 IRRSFGKKRL-----VIESD----LSLEELANIPGILKITETKDGSWRIQIENETVAREIFQEVARDGYIQRFELQEPSL  287 (300)
T ss_pred             HHHhcCCceE-----EEecc----CchHHHhcCCCceeeeeccCCceEeecccchHHHHHHHHHhccceeEEEeecCCCH
Confidence            9864321100     01100    001112223344444443444 3322  1 23333334445566677999999999


Q ss_pred             ccccccc
Q 018938          337 ENFVLST  343 (348)
Q Consensus       337 e~~~~~~  343 (348)
                      +|+|+..
T Consensus       288 ~diFi~~  294 (300)
T COG4152         288 HDIFIEK  294 (300)
T ss_pred             HHHHHHH
Confidence            9999864

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.3e-48  Score=356.26  Aligned_cols=216  Identities=19%  Similarity=0.263  Sum_probs=174.1

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|+         ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....  
T Consensus         1 l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--   69 (235)
T cd03261           1 IELRGLTKSFG---------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSE--   69 (235)
T ss_pred             CeEEEEEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccCh--
Confidence            47899999994         3579999999999999999999999999999999999999999999999976432110  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                        ..    ...+++.++|+++....+...+..+.+ +..   .....    +++.++++.+++.  .++++.+|||||||
T Consensus        70 --~~----~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  143 (235)
T cd03261          70 --AE----LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKK  143 (235)
T ss_pred             --hh----HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence              00    012334566666554444444544432 221   11222    3456678888885  36788999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||++++|++|++++.|++++
T Consensus       144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~  223 (235)
T cd03261         144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE  223 (235)
T ss_pred             HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHH
Confidence            99999999999999999999999999999999999999876568999999999999999999999999999999998887


Q ss_pred             HHH
Q 018938          261 VKE  263 (348)
Q Consensus       261 ~~~  263 (348)
                      +..
T Consensus       224 ~~~  226 (235)
T cd03261         224 LRA  226 (235)
T ss_pred             HcC
Confidence            653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=1.7e-48  Score=368.11  Aligned_cols=283  Identities=21%  Similarity=0.334  Sum_probs=206.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +++++|++|+|+         ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++....  
T Consensus         2 ~l~~~~l~~~~~---------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~--   70 (301)
T TIGR03522         2 SIRVSSLTKLYG---------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP--   70 (301)
T ss_pred             EEEEEEEEEEEC---------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh--
Confidence            589999999994         467999999999999999999999999999999999999999999999997653210  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                ...++.++|.++...++..++..+++.   ...+..    .++..++++.+++.  .++++..|||||||
T Consensus        71 ----------~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q  140 (301)
T TIGR03522        71 ----------KEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQ  140 (301)
T ss_pred             ----------HHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHH
Confidence                      123445677766655555555554431   112222    23567788889986  47789999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+++|++|||||||+|||+.++..++++|++++ + +.|||++||+++++..+||||++|++|++++.|++++
T Consensus       141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~  218 (301)
T TIGR03522       141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDE  218 (301)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999999999999999999999985 3 7999999999999999999999999999999999998


Q ss_pred             HHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCccc-CCCCCccc--c---ChHHHHHHHhhccccccccceeec
Q 018938          261 VKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDK-QIHGSRVT--G---DPAQAAVRVMNNGWAAGRLHSTVA  334 (348)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~  334 (348)
                      +........+   .  +.......  ........++..... ......+.  .   ...++...+...++.+..+....+
T Consensus       219 ~~~~~~~~~~---~--i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (301)
T TIGR03522       219 LSAANKKQVI---E--VEFEEQID--LQLFETLEEISSVKNTGGNTWKLTFETPNDTRPEIFKLAQQKGLKLISLQQNEK  291 (301)
T ss_pred             HHHhcCCceE---E--EEecCcch--hHHHhhccccceeeecCCCeEEEEEcCccchHHHHHHHHHHCCCceEEEEeCCC
Confidence            8653211000   0  00000000  000011111111111 01111221  1   124455555667888888999999


Q ss_pred             Cccccccc
Q 018938          335 GEENFVLS  342 (348)
Q Consensus       335 ~le~~~~~  342 (348)
                      +||++|+.
T Consensus       292 sLe~~~~~  299 (301)
T TIGR03522       292 NLEQVFRE  299 (301)
T ss_pred             CHHHHHHH
Confidence            99999975

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-48  Score=371.36  Aligned_cols=278  Identities=17%  Similarity=0.243  Sum_probs=199.1

Q ss_pred             CeEEEeceEEEecCCCCCC-CCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           29 PTVEINALKFTYPGIDGHP-PPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~-~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      ++|+++||++.|+...+.. ..+...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~   83 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD   83 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence            5799999999995311000 001257999999999999999999999999999999999999999999999998653211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCc--cccccchHHHHHh-c--c-CCCC----HHHHHHHHHHcCCC---cCccCCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMIF-G--V-AGID----PQRRAELIKVLDID---LSWRMHKV  174 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~--~-~~~~----~~~~~~~l~~l~l~---~~~~~~~L  174 (348)
                      ..    .    ...+++.++|++++.  .++..++..+.+. .  . ....    .+++.++++.+++.   .++++++|
T Consensus        84 ~~----~----~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~L  155 (327)
T PRK11308         84 PE----A----QKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMF  155 (327)
T ss_pred             HH----H----HHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccC
Confidence            00    0    012334566665543  2333334332221 1  1 1112    23467888999985   37789999


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||||+|||+|||||+.+|++||+||||++||+.++.+++++|+++.++.|.|||+||||++.+.++||+|++|++|+|++
T Consensus       156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive  235 (327)
T PRK11308        156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE  235 (327)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999987779999999999999999999999999999999


Q ss_pred             ecChhHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHH
Q 018938          255 AMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQA  315 (348)
Q Consensus       255 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (348)
                      .|+.+++...+.+.+.+.+........... ...........|.....+.||++..+.+.+
T Consensus       236 ~g~~~~~~~~p~hpyt~~ll~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~gc~f~~rc~~~  295 (327)
T PRK11308        236 KGTKEQIFNNPRHPYTQALLSATPRLNPDD-RRERIKLTGELPSPLNPPPGCAFNARCPRA  295 (327)
T ss_pred             ECCHHHHhcCCCCHHHHHHHHhCCCcCccc-ccccccCCCCCCCCcCCCCCCCCCCCCcch
Confidence            999999987665544433222221100000 000011123334444456788887765543

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-48  Score=371.04  Aligned_cols=273  Identities=18%  Similarity=0.192  Sum_probs=195.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc----CCCceEEEcCeeccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM----VEPEMVKVLGRSAFH  105 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~----~~~G~i~i~G~~~~~  105 (348)
                      +|+++||++.|+...     +...+|+||||+|++||+++|+|+||||||||+++|+|+++    |++|+|.++|+++..
T Consensus         3 ~L~v~~l~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~   77 (326)
T PRK11022          3 LLNVDKLSVHFGDES-----APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR   77 (326)
T ss_pred             eEEEeCeEEEECCCC-----ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCc
Confidence            699999999996310     12469999999999999999999999999999999999987    378999999986532


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-h---ccCCCC----HHHHHHHHHHcCCC-----cCcc
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-F---GVAGID----PQRRAELIKVLDID-----LSWR  170 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~---~~~~~~----~~~~~~~l~~l~l~-----~~~~  170 (348)
                      ....    .   .....++.++|++++.  .++..++....+ .   ...+..    .+++.++++.+++.     .+++
T Consensus        78 ~~~~----~---~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~  150 (326)
T PRK11022         78 ISEK----E---RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVY  150 (326)
T ss_pred             CCHH----H---HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence            1100    0   0000112456665543  233333332211 1   111112    23467788999985     2578


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +++|||||+|||+|||||+.+|++||+||||++||+.++..++++|+++.++.|.|+|+||||++++.++||+|++|++|
T Consensus       151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G  230 (326)
T PRK11022        151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAG  230 (326)
T ss_pred             chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence            99999999999999999999999999999999999999999999999998777999999999999999999999999999


Q ss_pred             EEeeecChhHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHHH
Q 018938          251 KLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAA  316 (348)
Q Consensus       251 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (348)
                      +|++.|+++++.+.+.+.+...+...+..... . ...........|.....+.||++..+.+...
T Consensus       231 ~ive~g~~~~~~~~p~hpyt~~ll~~~~~~~~-~-~~~~~~~~g~~~~~~~~~~gc~~~~rc~~~~  294 (326)
T PRK11022        231 QVVETGKAHDIFRAPRHPYTQALLRALPEFAQ-D-KARLASLPGVVPGKYDRPNGCLLNPRCPYAT  294 (326)
T ss_pred             EEEEECCHHHHhhCCCChHHHHHHHhCccccc-c-ccccccCCCCCCCCcCCCCCCCCCCCCcchh
Confidence            99999999999876665544333222211000 0 0001111223334444566888877655433

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=3.3e-48  Score=372.70  Aligned_cols=216  Identities=25%  Similarity=0.379  Sum_probs=181.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+         +..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....  
T Consensus         2 ~L~i~~l~~~~~---------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~--   70 (353)
T PRK10851          2 SIEIANIKKSFG---------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH--   70 (353)
T ss_pred             EEEEEEEEEEeC---------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC--
Confidence            589999999994         367999999999999999999999999999999999999999999999998653210  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC------CCC----HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA------GID----PQRRAELIKVLDID--LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~----~~~~~~~l~~l~l~--~~~~~~~LSg  176 (348)
                                 ..++.++|++++..++..+++.+++ ++..      ..+    .+++.++++.+++.  .++++.+|||
T Consensus        71 -----------~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSg  139 (353)
T PRK10851         71 -----------ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSG  139 (353)
T ss_pred             -----------HHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence                       1124566766665555555554433 3321      112    23566788889886  4778999999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|
T Consensus       140 Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g  219 (353)
T PRK10851        140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG  219 (353)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence            99999999999999999999999999999999999999999998777999999999999999999999999999999999


Q ss_pred             ChhHHHHhhhh
Q 018938          257 PMDKVKEASKL  267 (348)
Q Consensus       257 ~~~~~~~~~~~  267 (348)
                      +++++...+..
T Consensus       220 ~~~~i~~~p~~  230 (353)
T PRK10851        220 TPDQVWREPAT  230 (353)
T ss_pred             CHHHHHhCccc
Confidence            99999876543

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=4.7e-48  Score=373.74  Aligned_cols=217  Identities=24%  Similarity=0.367  Sum_probs=183.8

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||+++|+         +..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++....
T Consensus        12 ~~~L~l~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~   82 (375)
T PRK09452         12 SPLVELRGISKSFD---------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP   82 (375)
T ss_pred             CceEEEEEEEEEEC---------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC
Confidence            45799999999994         367999999999999999999999999999999999999999999999998653211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                   ..++.++|+++...+++.+++.++ .++..  +..    ..++.++++.+++.  .++++.+|||||
T Consensus        83 -------------~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq  149 (375)
T PRK09452         83 -------------AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQ  149 (375)
T ss_pred             -------------HHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence                         123456677666656666565543 33321  222    23456788888886  478899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|+||||.+++..+||+|++|++|+++..|++
T Consensus       150 ~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~  229 (375)
T PRK09452        150 QQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP  229 (375)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            99999999999999999999999999999999999999999877799999999999999999999999999999999999


Q ss_pred             hHHHHhhh
Q 018938          259 DKVKEASK  266 (348)
Q Consensus       259 ~~~~~~~~  266 (348)
                      +++...+.
T Consensus       230 ~~i~~~p~  237 (375)
T PRK09452        230 REIYEEPK  237 (375)
T ss_pred             HHHHhCcc
Confidence            99887654

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=3.6e-48  Score=376.83  Aligned_cols=216  Identities=25%  Similarity=0.375  Sum_probs=180.0

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++.... 
T Consensus         2 ~~L~~~nls~~y~---------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~-   71 (402)
T PRK09536          2 PMIDVSDLSVEFG---------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS-   71 (402)
T ss_pred             ceEEEeeEEEEEC---------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCC-
Confidence            4799999999994         468999999999999999999999999999999999999999999999998653211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-------CCCC---HHHHHHHHHHcCCC--cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-------AGID---PQRRAELIKVLDID--LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~---~~~~~~~l~~l~l~--~~~~~~~LS  175 (348)
                                ...+++.++++++....+..++..+++ ++.       ....   .+++.++++.+++.  .++++.+||
T Consensus        72 ----------~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LS  141 (402)
T PRK09536         72 ----------ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLS  141 (402)
T ss_pred             ----------HHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCC
Confidence                      112344566666555544455555433 211       1111   24567788989986  367899999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+++|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++.++|||+++|++|+++..
T Consensus       142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~  220 (402)
T PRK09536        142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAA  220 (402)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999975 589999999999999999999999999999999


Q ss_pred             cChhHHHHhh
Q 018938          256 MPMDKVKEAS  265 (348)
Q Consensus       256 g~~~~~~~~~  265 (348)
                      |+++++....
T Consensus       221 G~~~ev~~~~  230 (402)
T PRK09536        221 GPPADVLTAD  230 (402)
T ss_pred             cCHHHHhCcH
Confidence            9999887543

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-48  Score=369.99  Aligned_cols=274  Identities=18%  Similarity=0.258  Sum_probs=193.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc----CCCceEEEcCeecc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM----VEPEMVKVLGRSAF  104 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~----~~~G~i~i~G~~~~  104 (348)
                      ++|+++||+++|+..+     +...+|+||||+|++||+++|+|+||||||||+++|+|+++    |++|+|.++|.++.
T Consensus         2 ~~L~v~~l~~~y~~~~-----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~   76 (330)
T PRK15093          2 PLLDIRNLTIEFKTSD-----GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL   76 (330)
T ss_pred             CeEEEeeeEEEEeCCC-----CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence            4799999999995311     23579999999999999999999999999999999999986    58899999998653


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH-hc-----cCC---CC----HHHHHHHHHHcCCCc--
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI-FG-----VAG---ID----PQRRAELIKVLDIDL--  167 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~-----~~~---~~----~~~~~~~l~~l~l~~--  167 (348)
                      .....    .   .....++.++|++|+..  ++...+..+.+ ..     ..+   ..    .+++.++++.+++..  
T Consensus        77 ~~~~~----~---~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~  149 (330)
T PRK15093         77 RLSPR----E---RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK  149 (330)
T ss_pred             cCCHH----H---HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH
Confidence            21100    0   00001124566655432  22233332221 11     001   01    235667899999852  


Q ss_pred             ---CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          168 ---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       168 ---~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                         ++++++|||||+|||+|||||+.+|++|||||||++||+.++.+++++|+++.++.|.|||+||||++++..+||+|
T Consensus       150 ~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri  229 (330)
T PRK15093        150 DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI  229 (330)
T ss_pred             HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence               57899999999999999999999999999999999999999999999999997767999999999999999999999


Q ss_pred             EEEcCCEEeeecChhHHHHhhhhhhHHHHHHHhhhhhHH-HHHHHHHHHhCCCCCcccCCCCCccccChHH
Q 018938          245 VYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDE-ERKRRRERKASGLPEFDKQIHGSRVTGDPAQ  314 (348)
Q Consensus       245 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (348)
                      ++|++|+|++.|+.+++...+.+.+...+.......... .............|.....+.||+|..+.+.
T Consensus       230 ~vm~~G~ive~g~~~~i~~~p~~~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~f~~rc~~  300 (330)
T PRK15093        230 NVLYCGQTVETAPSKELVTTPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEHLPIGCRLGPRCPY  300 (330)
T ss_pred             EEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCCccccccccccccccCCCCCCCcccCCCCCCCCCCCcc
Confidence            999999999999999988765554433222222110000 0000001112334444445678888776553

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=2.4e-48  Score=329.26  Aligned_cols=212  Identities=23%  Similarity=0.380  Sum_probs=181.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|.+++|+++|+.          .- =.++++|++||+++|+|||||||||||++|+|++.|.+|+|.++|.+.....+ 
T Consensus         1 ~l~L~~V~~~y~~----------~~-~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P-   68 (231)
T COG3840           1 MLALDDVRFSYGH----------LP-MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP-   68 (231)
T ss_pred             CccccceEEeeCc----------ce-EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc-
Confidence            4678999999942          22 35789999999999999999999999999999999999999999987643322 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC-C-----CCHHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA-G-----IDPQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-----~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                  ..+.+++.+|++.++..+++.+++ ++.. +     .++++++.++..+|+.  .++.|.+|||||||
T Consensus        69 ------------~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQ  136 (231)
T COG3840          69 ------------AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQ  136 (231)
T ss_pred             ------------ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHH
Confidence                        234566666777777777776554 3432 1     1345677888899986  57889999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||+|+.+-+||+||||||+|||..|.+++.++.+++.+.+.|++||||.++.+.+++|+++++++|+|.+.|+.++
T Consensus       137 RvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~  216 (231)
T COG3840         137 RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQE  216 (231)
T ss_pred             HHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHhh
Q 018938          261 VKEAS  265 (348)
Q Consensus       261 ~~~~~  265 (348)
                      ++...
T Consensus       217 ~~~~~  221 (231)
T COG3840         217 LLSGK  221 (231)
T ss_pred             HhccC
Confidence            87643

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.4e-48  Score=332.80  Aligned_cols=210  Identities=21%  Similarity=0.339  Sum_probs=178.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+|.|++        ++++|+||||+|++||++-|+||||||||||+|+|.+..+|+.|+|.++|.++..-.  
T Consensus         1 mI~f~~V~k~Y~~--------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~--   70 (223)
T COG2884           1 MIRFENVSKAYPG--------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLK--   70 (223)
T ss_pred             CeeehhhhhhcCC--------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccc--
Confidence            5899999999974        477999999999999999999999999999999999999999999999998764321  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                        ..++.    .+++.++.++|+..+....++.++ .+.+  .+..    .+++.++++.+|+.  .+..|.+|||||||
T Consensus        71 --~~~iP----~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQ  144 (223)
T COG2884          71 --GREIP----FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQ  144 (223)
T ss_pred             --ccccc----hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHH
Confidence              12232    357788888777777666666543 3332  2222    24567788888886  35679999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||+||||++++|++||.||||.+|||....++++++.++.+ .|.|||++|||.+.+.++--|++.+++|+++.+.
T Consensus       145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~  219 (223)
T COG2884         145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE  219 (223)
T ss_pred             HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence            99999999999999999999999999999999999999975 6999999999999999999999999999998764

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=4.4e-48  Score=365.66  Aligned_cols=214  Identities=22%  Similarity=0.333  Sum_probs=176.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  
T Consensus         3 ~~i~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--   71 (303)
T TIGR01288         3 VAIDLVGVSKSYG---------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR--   71 (303)
T ss_pred             cEEEEEeEEEEeC---------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc--
Confidence            4799999999994         36799999999999999999999999999999999999999999999999764211  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh--c-cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF--G-VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                                ....++.++|+++....+..++..+.+.  . ..+.+.    .++.++++.+++.  .++++.+||||||
T Consensus        72 ----------~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~  141 (303)
T TIGR01288        72 ----------ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMK  141 (303)
T ss_pred             ----------HHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHH
Confidence                      0123445667666554444455544331  1 112222    2345678888886  3678999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|++|+++..|+++
T Consensus       142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  220 (303)
T TIGR01288       142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH  220 (303)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence            999999999999999999999999999999999999999875 5899999999999999999999999999999999998


Q ss_pred             HHHHh
Q 018938          260 KVKEA  264 (348)
Q Consensus       260 ~~~~~  264 (348)
                      ++...
T Consensus       221 ~~~~~  225 (303)
T TIGR01288       221 ALIDE  225 (303)
T ss_pred             HHHhh
Confidence            87643

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=8.7e-48  Score=351.81  Aligned_cols=213  Identities=25%  Similarity=0.373  Sum_probs=173.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+         ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... 
T Consensus         2 ~l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-   71 (239)
T cd03296           2 SIEVRNVSKRFG---------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV-   71 (239)
T ss_pred             EEEEEeEEEEEC---------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-
Confidence            589999999995         3579999999999999999999999999999999999999999999999976421110 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC----C----HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI----D----PQRRAELIKVLDID--LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~----~----~~~~~~~l~~l~l~--~~~~~~~LSg  176 (348)
                                  .++.++|+++....+...++.+.+ +..  ...    .    .+.+.++++.+++.  .++++.+|||
T Consensus        72 ------------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~  139 (239)
T cd03296          72 ------------QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSG  139 (239)
T ss_pred             ------------cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCH
Confidence                        012345554443333334444332 211  111    1    12345778888885  3677899999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|+|||++|||++++..+||++++|++|+++..|
T Consensus       140 G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~  219 (239)
T cd03296         140 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVG  219 (239)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence            99999999999999999999999999999999999999999997656899999999999999999999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +++++...
T Consensus       220 ~~~~~~~~  227 (239)
T cd03296         220 TPDEVYDH  227 (239)
T ss_pred             CHHHHhcC
Confidence            98887653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.4e-48  Score=372.75  Aligned_cols=215  Identities=24%  Similarity=0.323  Sum_probs=179.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....  
T Consensus         3 ~l~i~~l~~~~~---------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~--   71 (369)
T PRK11000          3 SVTLRNVTKAYG---------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP--   71 (369)
T ss_pred             EEEEEEEEEEeC---------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC--
Confidence            599999999994         357999999999999999999999999999999999999999999999998653211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                 ..++.++|++++..++..+++.+++ ++.  .+..    .+++.++++.+++.  .++++.+|||||||
T Consensus        72 -----------~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~Q  140 (369)
T PRK11000         72 -----------PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ  140 (369)
T ss_pred             -----------HhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHH
Confidence                       0123456666655555555554433 322  1222    23466788889986  47789999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||++||+.++..+++.|+++.++.|.|+|+||||++++..+||++++|++|+++..|++++
T Consensus       141 RvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~  220 (369)
T PRK11000        141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE  220 (369)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999999987668999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 018938          261 VKEASK  266 (348)
Q Consensus       261 ~~~~~~  266 (348)
                      +...+.
T Consensus       221 i~~~p~  226 (369)
T PRK11000        221 LYHYPA  226 (369)
T ss_pred             HHhCcc
Confidence            876543

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.8e-49  Score=348.18  Aligned_cols=219  Identities=23%  Similarity=0.309  Sum_probs=180.3

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      +++++++|+|+|+         +..|++||||+|++||+++||||||||||||+|+|+|.++|++|+|.+.|+++..-..
T Consensus         3 ~lL~v~~l~k~FG---------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p   73 (250)
T COG0411           3 PLLEVRGLSKRFG---------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP   73 (250)
T ss_pred             ceeeeccceeecC---------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCH
Confidence            5799999999994         5789999999999999999999999999999999999999999999999987543221


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc------------cCCC--C----HHHHHHHHHHcCCC--c
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG------------VAGI--D----PQRRAELIKVLDID--L  167 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~--~----~~~~~~~l~~l~l~--~  167 (348)
                      .    +      ..+..++-.+|...++..+++.++. .+            ...+  .    .+++.++++.+|+.  .
T Consensus        74 ~----~------iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a  143 (250)
T COG0411          74 H----R------IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA  143 (250)
T ss_pred             H----H------HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh
Confidence            1    0      0112233333444455556554432 11            1111  1    13456788889986  4


Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      +.+..+||+|||+|+.|||||+.+|++|+||||.+||.+....++.++|+++.++.|.||++|.|||+.+..+||||+||
T Consensus       144 ~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl  223 (250)
T COG0411         144 DRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVL  223 (250)
T ss_pred             cchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEec
Confidence            67789999999999999999999999999999999999999999999999998777899999999999999999999999


Q ss_pred             cCCEEeeecChhHHHHhhh
Q 018938          248 AHGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       248 ~~G~i~~~g~~~~~~~~~~  266 (348)
                      +.|+++++|+|+++.+++.
T Consensus       224 ~~G~~IAeG~P~eV~~dp~  242 (250)
T COG0411         224 NYGEVIAEGTPEEVRNNPR  242 (250)
T ss_pred             cCCcCcccCCHHHHhcCHH
Confidence            9999999999999987654

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=9.6e-48  Score=366.71  Aligned_cols=275  Identities=18%  Similarity=0.223  Sum_probs=198.7

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeecc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAF  104 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~  104 (348)
                      .++|+++||++.|+...     +...+|+||||+|++||+++|+|+||||||||+++|+|+++|+   +|+|.++|.++.
T Consensus        10 ~~~L~i~~l~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~   84 (330)
T PRK09473         10 DALLDVKDLRVTFSTPD-----GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREIL   84 (330)
T ss_pred             CceEEEeCeEEEEecCC-----CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECC
Confidence            46899999999995311     2357999999999999999999999999999999999999886   999999998653


Q ss_pred             ccccccccCcccccchhhh-hhhhhcCCCc--cccccchHHHHH-h---ccCCCCH----HHHHHHHHHcCCCc-----C
Q 018938          105 HDTALTSSGDLSYLGGEWR-REVAFAGFEV--PIQMDVSAEKMI-F---GVAGIDP----QRRAELIKVLDIDL-----S  168 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~-~---~~~~~~~----~~~~~~l~~l~l~~-----~  168 (348)
                      .....    ..    ..++ +.++|++++.  .++..++..+.+ .   .......    +++.++++.+++..     +
T Consensus        85 ~~~~~----~~----~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~  156 (330)
T PRK09473         85 NLPEK----EL----NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMK  156 (330)
T ss_pred             cCCHH----HH----HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhc
Confidence            21100    00    0111 2466665543  233334333221 1   1111222    34567788888752     4


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +++++|||||+|||+|||||+.+|++||+||||++||+.++..++++|+++.++.|.|||+||||++.+..+||+|++|+
T Consensus       157 ~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~  236 (330)
T PRK09473        157 MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY  236 (330)
T ss_pred             CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            58999999999999999999999999999999999999999999999999987779999999999999999999999999


Q ss_pred             CCEEeeecChhHHHHhhhhhhHHHHHHHhhhhhHHHHHHHHHHHhCCCCCcccCCCCCccccChHHHHH
Q 018938          249 HGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAV  317 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (348)
                      +|+|++.|+++++...+.+.+...+...+.....  .........+..|.....+.||++..+.+.+..
T Consensus       237 ~G~ive~g~~~~i~~~p~~pyt~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gc~f~~rc~~~~~  303 (330)
T PRK09473        237 AGRTMEYGNARDVFYQPSHPYSIGLLNAVPRLDA--EGESLLTIPGNPPNLLRLPKGCPFQPRCPHAME  303 (330)
T ss_pred             CCEEEEECCHHHHHhCCCCHHHHHHHHhCCCccc--cccccccCCCCCCCccCCCCCCCCCCCCchhhh
Confidence            9999999999999887666554433222211000  000001112333444445678888876654443

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-47  Score=371.94  Aligned_cols=218  Identities=24%  Similarity=0.348  Sum_probs=184.8

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      ..++|+++|++++|+         +..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...
T Consensus        16 ~~~~l~l~~v~~~~~---------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~   86 (377)
T PRK11607         16 LTPLLEIRNLTKSFD---------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV   86 (377)
T ss_pred             CCceEEEEeEEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC
Confidence            346799999999994         35799999999999999999999999999999999999999999999999865321


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDG  177 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgG  177 (348)
                      .             ..++.++|++++..++..+++.+++ ++..  +..    .+++.++++.+++.  .++++.+||||
T Consensus        87 ~-------------~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgG  153 (377)
T PRK11607         87 P-------------PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGG  153 (377)
T ss_pred             C-------------HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHH
Confidence            0             1234577776666666666665543 3321  222    23456788888886  47889999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+|||||+.+|++|||||||++||+..+..+.+.|+++.++.|.|+|+||||++++..+||++++|++|+++..|+
T Consensus       154 q~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~  233 (377)
T PRK11607        154 QRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE  233 (377)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcC
Confidence            99999999999999999999999999999999999999999987779999999999999999999999999999999999


Q ss_pred             hhHHHHhhh
Q 018938          258 MDKVKEASK  266 (348)
Q Consensus       258 ~~~~~~~~~  266 (348)
                      ++++...+.
T Consensus       234 ~~~~~~~p~  242 (377)
T PRK11607        234 PEEIYEHPT  242 (377)
T ss_pred             HHHHHhCCc
Confidence            999887554

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=8.1e-48  Score=370.75  Aligned_cols=215  Identities=24%  Similarity=0.343  Sum_probs=181.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC--ceEEEcCeeccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP--EMVKVLGRSAFHDT  107 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~--G~i~i~G~~~~~~~  107 (348)
                      .|+++||+++|+         +..+|+++||+|++||+++|+|||||||||||++|+|+++|++  |+|.++|.++....
T Consensus         5 ~l~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~   75 (362)
T TIGR03258         5 GIRIDHLRVAYG---------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP   75 (362)
T ss_pred             EEEEEEEEEEEC---------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC
Confidence            489999999994         3579999999999999999999999999999999999999999  99999998653110


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                   ..++.++|+++...+++.+++.+++ ++.  .+..    ..++.++++.+++.  .++++.+|||||
T Consensus        76 -------------~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq  142 (362)
T TIGR03258        76 -------------PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGM  142 (362)
T ss_pred             -------------HHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHH
Confidence                         1234566776666666666665443 332  1222    23467788889986  478899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhc-CcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER-GATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      ||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++. |.|+|+||||++++..+||+|++|++|+++..|+
T Consensus       143 ~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~  222 (362)
T TIGR03258       143 QQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE  222 (362)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence            999999999999999999999999999999999999999998765 8999999999999999999999999999999999


Q ss_pred             hhHHHHhhh
Q 018938          258 MDKVKEASK  266 (348)
Q Consensus       258 ~~~~~~~~~  266 (348)
                      ++++...+.
T Consensus       223 ~~~~~~~p~  231 (362)
T TIGR03258       223 PQALYDAPA  231 (362)
T ss_pred             HHHHHhCcC
Confidence            999987653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.4e-48  Score=368.90  Aligned_cols=223  Identities=23%  Similarity=0.299  Sum_probs=179.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+|+|+..+     +.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......
T Consensus         1 mi~i~~l~~~y~~~~-----~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~   75 (343)
T PRK11153          1 MIELKNISKVFPQGG-----RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEK   75 (343)
T ss_pred             CEEEEeEEEEeCCCC-----CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHH
Confidence            489999999995200     135799999999999999999999999999999999999999999999999865321100


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                          .    ...+++.++|++++..++...++.+.+ +.  ..+...    +++.++++.+++.  .++++.+|||||||
T Consensus        76 ----~----~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~q  147 (343)
T PRK11153         76 ----E----LRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQ  147 (343)
T ss_pred             ----H----HHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence                0    011234567766655444444444332 22  112222    3456788888886  36788999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||++++..+||++++|++|++++.|++++
T Consensus       148 Rv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~  227 (343)
T PRK11153        148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE  227 (343)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999999977668999999999999999999999999999999999998


Q ss_pred             HHHhh
Q 018938          261 VKEAS  265 (348)
Q Consensus       261 ~~~~~  265 (348)
                      +...+
T Consensus       228 ~~~~~  232 (343)
T PRK11153        228 VFSHP  232 (343)
T ss_pred             HHhCC
Confidence            87543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=7.6e-48  Score=347.87  Aligned_cols=210  Identities=24%  Similarity=0.380  Sum_probs=171.0

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+...    
T Consensus         1 i~~~~~~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----   67 (220)
T cd03265           1 IEVENLVKKYG---------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE----   67 (220)
T ss_pred             CEEEEEEEEEC---------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC----
Confidence            47899999994         35799999999999999999999999999999999999999999999999754210    


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                              ...+++.++|+++....+...+..+.+ +.  ..+..    .+++.++++.+++.  .++++.+||||||||
T Consensus        68 --------~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  139 (220)
T cd03265          68 --------PREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRR  139 (220)
T ss_pred             --------hHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHH
Confidence                    012234456665554444444443322 21  11222    23456788889886  367889999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      |+|||||+.+|++|||||||++||+.++..++++|.++.++.|.|||++|||++++..+||++++|++|+++..++++++
T Consensus       140 ~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            99999999999999999999999999999999999998766689999999999999999999999999999988876653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=6.1e-48  Score=379.11  Aligned_cols=239  Identities=25%  Similarity=0.379  Sum_probs=190.7

Q ss_pred             CCCeEEEeceEEEecCCCCC--CCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938           27 SKPTVEINALKFTYPGIDGH--PPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF  104 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~--~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~  104 (348)
                      ..|+++++||++.|...++-  +..+...+++||||+|.+||++||||+||||||||.|+|+|+++|++|.|.++|.+ .
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~  355 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-L  355 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-c
Confidence            45789999999999742100  00134679999999999999999999999999999999999999999999999976 1


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc---cC-CC-C---HHHHHHHHHHcCCC---cCccCCC
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VA-GI-D---PQRRAELIKVLDID---LSWRMHK  173 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-~---~~~~~~~l~~l~l~---~~~~~~~  173 (348)
                      .-.    .+...  ....+.++.|+++...+++..++.+.+..   .. .. .   .+++.++++..++.   .+++|++
T Consensus       356 ~~~----~~~~~--~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~e  429 (539)
T COG1123         356 DLT----GGELR--RLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE  429 (539)
T ss_pred             ccc----cchhh--hhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchh
Confidence            111    11110  00112234555555556666666554321   11 11 1   23567789999986   4789999


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||||||+|||||+.+|++||+|||||+||+..+..++++|+++.++.|.|+||||||+..+.++||||++|++|+|+
T Consensus       430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV  509 (539)
T COG1123         430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV  509 (539)
T ss_pred             cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecChhHHHHhhhhhhHHH
Q 018938          254 LAMPMDKVKEASKLSLMRT  272 (348)
Q Consensus       254 ~~g~~~~~~~~~~~~~~~~  272 (348)
                      +.|+.+.+++.+.+++.+.
T Consensus       510 E~G~~~~v~~~p~h~Ytr~  528 (539)
T COG1123         510 EEGPTEKVFENPQHPYTRK  528 (539)
T ss_pred             EeCCHHHHhcCCCChHHHH
Confidence            9999999998877765543

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=7.1e-48  Score=346.34  Aligned_cols=204  Identities=28%  Similarity=0.422  Sum_probs=164.3

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  
T Consensus         1 l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--   69 (213)
T cd03259           1 LELKGLSKTYG---------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--   69 (213)
T ss_pred             CeeeeeEEEeC---------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--
Confidence            46899999994         3579999999999999999999999999999999999999999999999986432110  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                 .++.++|+++....+...+..+.+ +.  .....    .+++.++++.+++.  .++++.+||||||||
T Consensus        70 -----------~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr  138 (213)
T cd03259          70 -----------ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQR  138 (213)
T ss_pred             -----------hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence                       112344554443333333433322 11  11112    23456788888886  367789999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++..+||++++|++|++++.|
T Consensus       139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999999999999999987656899999999999999999999999999997654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=1.7e-47  Score=350.03  Aligned_cols=216  Identities=24%  Similarity=0.367  Sum_probs=172.4

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|++        ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... 
T Consensus         1 l~~~~l~~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-   71 (241)
T cd03256           1 IEVENLSKTYPN--------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK-   71 (241)
T ss_pred             CEEeeEEEecCC--------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHh-
Confidence            468999999941        25799999999999999999999999999999999999999999999999764321100 


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----------C-CC---HHHHHHHHHHcCCC--cCccCCC
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----------G-ID---PQRRAELIKVLDID--LSWRMHK  173 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~-~~---~~~~~~~l~~l~l~--~~~~~~~  173 (348)
                             ....+++.++|+++....+...+..+.+ +...          . ..   .+++.++++.+++.  .++++.+
T Consensus        72 -------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  144 (241)
T cd03256          72 -------ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQ  144 (241)
T ss_pred             -------HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCccc
Confidence                   0011234566665554444434444332 1110          1 11   23456778888885  3678899


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||++++|++|+++
T Consensus       145 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~  224 (241)
T cd03256         145 LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV  224 (241)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999987666899999999999999999999999999999


Q ss_pred             eecChhHHH
Q 018938          254 LAMPMDKVK  262 (348)
Q Consensus       254 ~~g~~~~~~  262 (348)
                      +.++++++.
T Consensus       225 ~~~~~~~~~  233 (241)
T cd03256         225 FDGPPAELT  233 (241)
T ss_pred             eecCHHHhh
Confidence            999888764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=8.5e-48  Score=346.53  Aligned_cols=207  Identities=23%  Similarity=0.395  Sum_probs=165.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++|++++|++       +.+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... 
T Consensus         1 ~l~~~~l~~~~~~-------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-   72 (216)
T TIGR00960         1 MIRFEQVSKAYPG-------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRG-   72 (216)
T ss_pred             CeEEEEEEEEecC-------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcCh-
Confidence            4889999999952       22469999999999999999999999999999999999999999999999976422100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                         ..    ...+++.++|+++....+...+..+.+ +..  .+..    .+++.++++.+++.  .++++.+|||||||
T Consensus        73 ---~~----~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  145 (216)
T TIGR00960        73 ---RE----IPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQ  145 (216)
T ss_pred             ---hH----HHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence               00    011345567766655444444444332 221  1111    23456788888885  36788999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      ||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||+||||++++..+||++++|++|++
T Consensus       146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999999999999865 489999999999999999999999999975

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-47  Score=351.04  Aligned_cols=217  Identities=21%  Similarity=0.334  Sum_probs=174.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+.        ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         1 ~l~~~~l~~~~~~--------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-   71 (243)
T TIGR02315         1 MLEVENLSKVYPN--------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRG-   71 (243)
T ss_pred             CeEEEeeeeecCC--------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCH-
Confidence            4789999999941        3579999999999999999999999999999999999999999999999976422100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----------C-C---CHHHHHHHHHHcCCC--cCccCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----------G-I---DPQRRAELIKVLDID--LSWRMH  172 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~-~---~~~~~~~~l~~l~l~--~~~~~~  172 (348)
                         ..    ...+++.++|+++....+...+..+.+ +...          . .   ..+++.++++.+++.  .++++.
T Consensus        72 ---~~----~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  144 (243)
T TIGR02315        72 ---KK----LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD  144 (243)
T ss_pred             ---HH----HHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence               00    011344566766554444444444432 2110          0 0   123456778888885  367889


Q ss_pred             CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      +|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|+|||+||||++++..+||++++|++|++
T Consensus       145 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i  224 (243)
T TIGR02315       145 QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI  224 (243)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence            99999999999999999999999999999999999999999999998766689999999999999999999999999999


Q ss_pred             eeecChhHHH
Q 018938          253 QLAMPMDKVK  262 (348)
Q Consensus       253 ~~~g~~~~~~  262 (348)
                      ++.|+++++.
T Consensus       225 ~~~~~~~~~~  234 (243)
T TIGR02315       225 VFDGAPSELD  234 (243)
T ss_pred             EecCCHHHhC
Confidence            9999887753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.9e-47  Score=348.77  Aligned_cols=213  Identities=22%  Similarity=0.304  Sum_probs=170.9

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|+         ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... 
T Consensus         1 l~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-   70 (236)
T cd03219           1 LEVRGLTKRFG---------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-   70 (236)
T ss_pred             CeeeeeEEEEC---------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHH-
Confidence            46899999994         35799999999999999999999999999999999999999999999999764321100 


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--C-CC---------C----HHHHHHHHHHcCCC--cCccC
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--A-GI---------D----PQRRAELIKVLDID--LSWRM  171 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~---------~----~~~~~~~l~~l~l~--~~~~~  171 (348)
                               ...+..++|+++....+...+..+.+ +..  . ..         .    ...+.++++.+++.  .++++
T Consensus        71 ---------~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  141 (236)
T cd03219          71 ---------EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA  141 (236)
T ss_pred             ---------HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh
Confidence                     00122355555554444444444332 211  1 10         1    22456788888885  36788


Q ss_pred             CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      .+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|+|||++|||++++..+||++++|++|+
T Consensus       142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~  220 (236)
T cd03219         142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGR  220 (236)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence            99999999999999999999999999999999999999999999999875 58999999999999999999999999999


Q ss_pred             EeeecChhHHHH
Q 018938          252 LQLAMPMDKVKE  263 (348)
Q Consensus       252 i~~~g~~~~~~~  263 (348)
                      ++..++++++..
T Consensus       221 i~~~~~~~~~~~  232 (236)
T cd03219         221 VIAEGTPDEVRN  232 (236)
T ss_pred             EEeecCHHHhcc
Confidence            999998887653

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=2.6e-47  Score=347.29  Aligned_cols=221  Identities=23%  Similarity=0.316  Sum_probs=174.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++|++++|++..     +..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus         1 ~i~~~~l~~~~~~~~-----~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~   75 (233)
T cd03258           1 MIELKNVSKVFGDTG-----GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGK   75 (233)
T ss_pred             CeEEecceEEccCCC-----CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH
Confidence            488999999995200     012799999999999999999999999999999999999999999999999864321100


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                          .    ....++.++|+++....+...+..+.+ +..  ....    ...+.++++.+++.  .++++.+|||||||
T Consensus        76 ----~----~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  147 (233)
T cd03258          76 ----E----LRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQ  147 (233)
T ss_pred             ----H----HHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHH
Confidence                0    001234566666554444444444332 211  1222    23456788888886  36788999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++||+++++..+||++++|++|++++.+++++
T Consensus       148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (233)
T cd03258         148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE  227 (233)
T ss_pred             HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence            99999999999999999999999999999999999999876668999999999999999999999999999999998777


Q ss_pred             HHH
Q 018938          261 VKE  263 (348)
Q Consensus       261 ~~~  263 (348)
                      +..
T Consensus       228 ~~~  230 (233)
T cd03258         228 VFA  230 (233)
T ss_pred             Hhc
Confidence            643

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-47  Score=351.21  Aligned_cols=207  Identities=20%  Similarity=0.307  Sum_probs=170.9

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.   
T Consensus        10 ~~~l~i~~l~~~~~---------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~---   77 (257)
T PRK11247         10 GTPLLLNAVSKRYG---------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA---   77 (257)
T ss_pred             CCcEEEEEEEEEEC---------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH---
Confidence            36799999999994         357999999999999999999999999999999999999999999999886431   


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQI  184 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l  184 (348)
                                   .+++.++|+++...++...+..+.+ +........++.++++.+++.  .++++.+|||||||||+|
T Consensus        78 -------------~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~l  144 (257)
T PRK11247         78 -------------EAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVAL  144 (257)
T ss_pred             -------------HhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence                         1123345554444333334444433 222211234567788899886  367889999999999999


Q ss_pred             HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      ||||+.+|++|||||||+|||+.++..+.++|+++.++.|.|||+||||++++..+||++++|++|+++..++.+
T Consensus       145 araL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        145 ARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            999999999999999999999999999999999987666899999999999999999999999999999887654

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-47  Score=356.21  Aligned_cols=221  Identities=22%  Similarity=0.331  Sum_probs=175.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||++.|+...    ...+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         2 ~l~~~~l~~~y~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-   76 (287)
T PRK13637          2 SIKIENLTHIYMEGT----PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV-   76 (287)
T ss_pred             EEEEEEEEEECCCCC----ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc-
Confidence            489999999995310    002469999999999999999999999999999999999999999999999986532110 


Q ss_pred             cccCcccccchhhhhhhhhcCCCcc-ccccchHH-HHHhcc--CCCCH----HHHHHHHHHcCCC----cCccCCCCCHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAE-KMIFGV--AGIDP----QRRAELIKVLDID----LSWRMHKVSDG  177 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~----~~~~~~l~~l~l~----~~~~~~~LSgG  177 (348)
                              -...++..++|++++.. .....++. ++.++.  .+...    +++.++++.+++.    .++++.+||||
T Consensus        77 --------~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgG  148 (287)
T PRK13637         77 --------KLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGG  148 (287)
T ss_pred             --------cHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHH
Confidence                    00123345666655431 11123333 333221  12222    3456788888985    36789999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      ||||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||||++|++|++++.|+
T Consensus       149 q~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~  228 (287)
T PRK13637        149 QKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT  228 (287)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence            99999999999999999999999999999999999999999976668999999999999999999999999999999999


Q ss_pred             hhHHHH
Q 018938          258 MDKVKE  263 (348)
Q Consensus       258 ~~~~~~  263 (348)
                      ++++.+
T Consensus       229 ~~~~~~  234 (287)
T PRK13637        229 PREVFK  234 (287)
T ss_pred             HHHHHh
Confidence            998765

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-47  Score=353.44  Aligned_cols=214  Identities=26%  Similarity=0.376  Sum_probs=172.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|++        ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... 
T Consensus         3 ~~l~~~~l~~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-   73 (274)
T PRK13647          3 NIIEVEDLHFRYKD--------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEN-   73 (274)
T ss_pred             ceEEEEEEEEEeCC--------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCC-
Confidence            37999999999952        356999999999999999999999999999999999999999999999998642111 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc-ccccchHH-HHHhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAE-KMIFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                ....+..++|+++... .....++. ++.++.  .+..    .+++.++++.+++.  .++++.+|||||
T Consensus        74 ----------~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~  143 (274)
T PRK13647         74 ----------EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQ  143 (274)
T ss_pred             ----------HHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHH
Confidence                      0122344566654431 11222333 332221  1222    13456788888885  467899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||++||+.++..++++|++++++ |.|||++|||++++.++||++++|++|++++.|++
T Consensus       144 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~  222 (274)
T PRK13647        144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK  222 (274)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            99999999999999999999999999999999999999998754 89999999999999999999999999999999998


Q ss_pred             hHHH
Q 018938          259 DKVK  262 (348)
Q Consensus       259 ~~~~  262 (348)
                      +++.
T Consensus       223 ~~~~  226 (274)
T PRK13647        223 SLLT  226 (274)
T ss_pred             HHhc
Confidence            7543

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-46  Score=345.14  Aligned_cols=214  Identities=19%  Similarity=0.248  Sum_probs=174.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++|++++|+         ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....  
T Consensus         3 ~l~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~--   71 (241)
T PRK14250          3 EIEFKEVSYSSF---------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID--   71 (241)
T ss_pred             eEEEEeEEEEeC---------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC--
Confidence            589999999994         357999999999999999999999999999999999999999999999997642110  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~  183 (348)
                               ...+++.++|.++...++. .+..+.+ +..  ......++.++++.+++.   .++++.+||||||||++
T Consensus        72 ---------~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~  141 (241)
T PRK14250         72 ---------VIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVS  141 (241)
T ss_pred             ---------hHHhhhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH
Confidence                     0112334556555433332 2343332 211  111234566788889885   25778999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      |||||+.+|++|||||||+|||+.++..+.+.|+++.++.|.|||++|||++++..+||++++|++|+++..++++++..
T Consensus       142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  221 (241)
T PRK14250        142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT  221 (241)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999999876568999999999999999999999999999999999988865


Q ss_pred             h
Q 018938          264 A  264 (348)
Q Consensus       264 ~  264 (348)
                      .
T Consensus       222 ~  222 (241)
T PRK14250        222 N  222 (241)
T ss_pred             C
Confidence            4

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=5.8e-47  Score=352.32  Aligned_cols=219  Identities=16%  Similarity=0.242  Sum_probs=175.4

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus         6 ~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~   76 (269)
T PRK11831          6 NLVDMRGVSFTRG---------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSR   76 (269)
T ss_pred             ceEEEeCeEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccCh
Confidence            4799999999994         3679999999999999999999999999999999999999999999999975422110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                          ...    ...++.++|+++....+...+..+.+ +..   ...+.    .++.++++.+++.  .++++.+|||||
T Consensus        77 ----~~~----~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq  148 (269)
T PRK11831         77 ----SRL----YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGM  148 (269)
T ss_pred             ----hhH----HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHH
Confidence                000    01223455655544444444443332 211   11122    2445678888886  367889999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||+||||++++..+||++++|++|++++.|++
T Consensus       149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~  228 (269)
T PRK11831        149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSA  228 (269)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999999999999999999998766689999999999999999999999999999999998


Q ss_pred             hHHHHh
Q 018938          259 DKVKEA  264 (348)
Q Consensus       259 ~~~~~~  264 (348)
                      +++.+.
T Consensus       229 ~~~~~~  234 (269)
T PRK11831        229 QALQAN  234 (269)
T ss_pred             HHHhcC
Confidence            887653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=3.9e-47  Score=343.24  Aligned_cols=207  Identities=26%  Similarity=0.375  Sum_probs=165.1

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|++..     +.+++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..     
T Consensus         1 l~~~~l~~~~~~~~-----~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----   70 (220)
T cd03293           1 LEVRNVSKTYGGGG-----GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----   70 (220)
T ss_pred             CeEEEEEEEcCCCC-----cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----
Confidence            46899999995200     01579999999999999999999999999999999999999999999999976421     


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                 .++.++|+++...++...+..+.+ +.  ..+..    .+.+.++++.+++.  .++++.+||||||||
T Consensus        71 -----------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr  139 (220)
T cd03293          71 -----------PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQR  139 (220)
T ss_pred             -----------ccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHH
Confidence                       012234444433333333333322 21  11111    23456788888885  367889999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc--CCEEeeecCh
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA--HGKLQLAMPM  258 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~--~G~i~~~g~~  258 (348)
                      ++|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++..+||++++|+  +|++++.++.
T Consensus       140 l~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            9999999999999999999999999999999999999876668999999999999999999999999  7999987764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.3e-47  Score=350.90  Aligned_cols=219  Identities=21%  Similarity=0.309  Sum_probs=177.0

Q ss_pred             CCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938           25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF  104 (348)
Q Consensus        25 ~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~  104 (348)
                      .+...+|+++||+++|+         ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus         2 ~~~~~~l~i~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~   72 (265)
T PRK10253          2 TESVARLRGEQLTLGYG---------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ   72 (265)
T ss_pred             CccccEEEEEEEEEEEC---------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhh
Confidence            34456899999999995         357999999999999999999999999999999999999999999999997542


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-C------CCC---HHHHHHHHHHcCCC--cCccC
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-A------GID---PQRRAELIKVLDID--LSWRM  171 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~------~~~---~~~~~~~l~~l~l~--~~~~~  171 (348)
                      ...           ....+..++|++++...+...+..+.+ +.. .      ...   ..++.++++.+++.  .++++
T Consensus        73 ~~~-----------~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  141 (265)
T PRK10253         73 HYA-----------SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV  141 (265)
T ss_pred             hCC-----------HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc
Confidence            110           011223456665554333334444332 211 0      011   23456788888885  46789


Q ss_pred             CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      .+||||||||++|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++..+||++++|++|+
T Consensus       142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~  221 (265)
T PRK10253        142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGK  221 (265)
T ss_pred             ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999876568999999999999999999999999999


Q ss_pred             EeeecChhHHHH
Q 018938          252 LQLAMPMDKVKE  263 (348)
Q Consensus       252 i~~~g~~~~~~~  263 (348)
                      +++.|+++++..
T Consensus       222 i~~~g~~~~~~~  233 (265)
T PRK10253        222 IVAQGAPKEIVT  233 (265)
T ss_pred             EEEeCCHHHHhh
Confidence            999999887654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=3.8e-47  Score=341.51  Aligned_cols=204  Identities=25%  Similarity=0.382  Sum_probs=164.2

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  
T Consensus         1 i~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--   69 (213)
T cd03301           1 VELENVTKRFG---------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--   69 (213)
T ss_pred             CEEEeeEEEEC---------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--
Confidence            46899999995         3579999999999999999999999999999999999999999999999986532111  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                 .+..++|+++....+...+..+.+ +.  .....    .+++.++++.+++.  .++++.+||||||||
T Consensus        70 -----------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  138 (213)
T cd03301          70 -----------KDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQR  138 (213)
T ss_pred             -----------ccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHH
Confidence                       012344444443333333433322 21  11122    12456678888885  467889999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||++++|++|++++.|
T Consensus       139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            999999999999999999999999999999999999997666899999999999999999999999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-46  Score=353.65  Aligned_cols=223  Identities=22%  Similarity=0.307  Sum_probs=176.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|++...    ...++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++......
T Consensus         2 ~l~~~~l~~~y~~~~~----~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   77 (290)
T PRK13634          2 DITFQKVEHRYQYKTP----FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKN   77 (290)
T ss_pred             EEEEEEEEEEECCCCc----ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence            3899999999953100    024699999999999999999999999999999999999999999999999865311000


Q ss_pred             cccCcccccchhhhhhhhhcCCCc--cccccchHH-HHHhcc--CCCCH----HHHHHHHHHcCCC---cCccCCCCCHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAE-KMIFGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDG  177 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~--~~~~~----~~~~~~l~~l~l~---~~~~~~~LSgG  177 (348)
                             .-...+++.++|++++.  .+. ..++. ++.++.  .+...    +++.++++.+++.   .++++.+||||
T Consensus        78 -------~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG  149 (290)
T PRK13634         78 -------KKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGG  149 (290)
T ss_pred             -------chHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHH
Confidence                   00012334566665543  122 22333 333321  12222    3456788899985   36789999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++..+||||++|++|++++.|+
T Consensus       150 q~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~  229 (290)
T PRK13634        150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT  229 (290)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence            99999999999999999999999999999999999999999977679999999999999999999999999999999999


Q ss_pred             hhHHHHh
Q 018938          258 MDKVKEA  264 (348)
Q Consensus       258 ~~~~~~~  264 (348)
                      ++++...
T Consensus       230 ~~~~~~~  236 (290)
T PRK13634        230 PREIFAD  236 (290)
T ss_pred             HHHHhcC
Confidence            9887653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=4.5e-47  Score=358.66  Aligned_cols=201  Identities=22%  Similarity=0.379  Sum_probs=168.0

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG  130 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...            ...+++.++|++
T Consensus         5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------------~~~~~~~i~~~~   72 (302)
T TIGR01188         5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE------------PRKVRRSIGIVP   72 (302)
T ss_pred             CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC------------HHHHHhhcEEec
Confidence            46799999999999999999999999999999999999999999999999764221            012345577776


Q ss_pred             CCccccccchHHHHHh-c--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccC
Q 018938          131 FEVPIQMDVSAEKMIF-G--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT  201 (348)
Q Consensus       131 ~~~~~~~~~~~~~~~~-~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPt  201 (348)
                      +....+..+++.+.+. .  ..+..    .+++.++++.+++.  .++++.+|||||||||+||+||+++|++|||||||
T Consensus        73 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  152 (302)
T TIGR01188        73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT  152 (302)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            6655555555554331 1  12222    23467788999986  46789999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHh
Q 018938          202 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       202 sgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  264 (348)
                      +|||+.++..++++|+++++ .|.|||++||+++++..+||++++|++|+++..|+++++...
T Consensus       153 ~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  214 (302)
T TIGR01188       153 TGLDPRTRRAIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR  214 (302)
T ss_pred             cCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence            99999999999999999875 489999999999999999999999999999999999988653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=7.2e-47  Score=338.56  Aligned_cols=203  Identities=25%  Similarity=0.336  Sum_probs=167.3

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...    
T Consensus         1 l~~~~l~~~~~---------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----   67 (208)
T cd03268           1 LKTNDLTKTYG---------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN----   67 (208)
T ss_pred             CEEEEEEEEEC---------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch----
Confidence            47899999994         35799999999999999999999999999999999999999999999999753210    


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC  185 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA  185 (348)
                               ..+++.++|+++....+...+..+.+ +.  ......+++.++++.+++.  .++++.+|||||||||+||
T Consensus        68 ---------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  138 (208)
T cd03268          68 ---------IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIA  138 (208)
T ss_pred             ---------HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHH
Confidence                     11234456665554444444444432 21  1222445677888999885  3678899999999999999


Q ss_pred             HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|++|++++.|
T Consensus       139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999999999999875 5899999999999999999999999999998654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-46  Score=352.22  Aligned_cols=218  Identities=23%  Similarity=0.307  Sum_probs=176.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++|++++|++        ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus         4 ~~l~~~~l~~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~   75 (283)
T PRK13636          4 YILKVEELNYNYSD--------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRK   75 (283)
T ss_pred             ceEEEEeEEEEeCC--------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcc
Confidence            47999999999952        3579999999999999999999999999999999999999999999999986521100


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc-ccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                               ....++..++|++++.. .....+..+.+ +..  .+..    .+++.++++.+++.  .++++.+|||||
T Consensus        76 ---------~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~  146 (283)
T PRK13636         76 ---------GLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQ  146 (283)
T ss_pred             ---------hHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHH
Confidence                     00123445666655431 11223333322 211  1222    13456778888886  367899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      |||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+|||+++|++|++++.|++
T Consensus       147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~  226 (283)
T PRK13636        147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP  226 (283)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999999999999999999999776689999999999999999999999999999999999


Q ss_pred             hHHHH
Q 018938          259 DKVKE  263 (348)
Q Consensus       259 ~~~~~  263 (348)
                      +++..
T Consensus       227 ~~~~~  231 (283)
T PRK13636        227 KEVFA  231 (283)
T ss_pred             HHHhc
Confidence            88765

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.7e-47  Score=350.09  Aligned_cols=217  Identities=24%  Similarity=0.381  Sum_probs=175.6

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      .+++|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus         8 ~~~~l~i~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~   78 (265)
T PRK10575          8 SDTTFALRNVSFRVP---------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW   78 (265)
T ss_pred             CCceEEEeeEEEEEC---------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhC
Confidence            346899999999994         35799999999999999999999999999999999999999999999999764211


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC---C----CC---HHHHHHHHHHcCCC--cCccCCC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA---G----ID---PQRRAELIKVLDID--LSWRMHK  173 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~----~~---~~~~~~~l~~l~l~--~~~~~~~  173 (348)
                      ..           ..+++.++|+++........+..+.+ +...   .    ..   .+++.++++.+++.  .++++.+
T Consensus        79 ~~-----------~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  147 (265)
T PRK10575         79 SS-----------KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDS  147 (265)
T ss_pred             CH-----------HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc
Confidence            10           12233456655543333334443332 2110   0    11   23456788888885  4678999


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||||||+|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++||+++++..+||++++|++|+++
T Consensus       148 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~  227 (265)
T PRK10575        148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI  227 (265)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence            99999999999999999999999999999999999999999999987666899999999999999999999999999999


Q ss_pred             eecChhHHHH
Q 018938          254 LAMPMDKVKE  263 (348)
Q Consensus       254 ~~g~~~~~~~  263 (348)
                      +.++++++..
T Consensus       228 ~~~~~~~~~~  237 (265)
T PRK10575        228 AQGTPAELMR  237 (265)
T ss_pred             EecCHHHhcC
Confidence            9998887654

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-46  Score=347.41  Aligned_cols=216  Identities=17%  Similarity=0.225  Sum_probs=172.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++|++++|+         ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus         4 ~~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~   74 (255)
T PRK11300          4 PLLSVSGLMMRFG---------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG   74 (255)
T ss_pred             ceEEEeeEEEEEC---------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCH
Confidence            5799999999994         3679999999999999999999999999999999999999999999999986432110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc------------CC------CC---HHHHHHHHHHcCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV------------AG------ID---PQRRAELIKVLDID  166 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~------~~---~~~~~~~l~~l~l~  166 (348)
                      .          ...+..++|+++....+...+..+.+ ++.            ..      ..   ...+.++++.+++.
T Consensus        75 ~----------~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~  144 (255)
T PRK11300         75 H----------QIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL  144 (255)
T ss_pred             H----------HHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh
Confidence            0          00112244444444444444443322 110            00      00   12345677888875


Q ss_pred             --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                        .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.+++++.|.|||++||+++++..+||++
T Consensus       145 ~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i  224 (255)
T PRK11300        145 EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI  224 (255)
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE
Confidence              467899999999999999999999999999999999999999999999999987655899999999999999999999


Q ss_pred             EEEcCCEEeeecChhHHHH
Q 018938          245 VYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       245 ~~l~~G~i~~~g~~~~~~~  263 (348)
                      ++|++|++++.++++++..
T Consensus       225 ~~l~~g~i~~~~~~~~~~~  243 (255)
T PRK11300        225 YVVNQGTPLANGTPEEIRN  243 (255)
T ss_pred             EEEECCeEEecCCHHHHhh
Confidence            9999999999999887754

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1e-46  Score=345.31  Aligned_cols=214  Identities=23%  Similarity=0.353  Sum_probs=173.0

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|++        .+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....  
T Consensus         1 l~~~~l~~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--   70 (242)
T cd03295           1 IEFENVTKRYGG--------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP--   70 (242)
T ss_pred             CEEEEEEEEeCC--------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh--
Confidence            468999999942        1579999999999999999999999999999999999999999999999976421100  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCCc----CccCCCCCHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDIDL----SWRMHKVSDGQR  179 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~~----~~~~~~LSgGqr  179 (348)
                               ..++..++|+++....+...+..+.+ +.  ..+..    .+.+.++++.+++..    ++++.+||||||
T Consensus        71 ---------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~  141 (242)
T cd03295          71 ---------VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQ  141 (242)
T ss_pred             ---------HHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHH
Confidence                     11233456665554444444444332 21  11222    234567888888863    567899999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||+++++..+||++++|++|++++.++++
T Consensus       142 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~  221 (242)
T cd03295         142 QRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD  221 (242)
T ss_pred             HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence            99999999999999999999999999999999999999987655899999999999999999999999999999999888


Q ss_pred             HHHH
Q 018938          260 KVKE  263 (348)
Q Consensus       260 ~~~~  263 (348)
                      ++.+
T Consensus       222 ~~~~  225 (242)
T cd03295         222 EILR  225 (242)
T ss_pred             HHHc
Confidence            7754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=1.2e-46  Score=343.60  Aligned_cols=213  Identities=25%  Similarity=0.467  Sum_probs=171.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++|++++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....  
T Consensus         1 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~--   69 (236)
T TIGR03864         1 ALEVAGLSFAYG---------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAP--   69 (236)
T ss_pred             CEEEEeeEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCC--
Confidence            478999999994         357999999999999999999999999999999999999999999999997542110  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                ....+.++|.++....+...+..+.+ +.  .....    .+.+.++++.+++.  .++++.+|||||+|
T Consensus        70 ----------~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q  139 (236)
T TIGR03864        70 ----------RAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRR  139 (236)
T ss_pred             ----------hhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHH
Confidence                      01112455555544333334443332 11  11222    23456778888885  36788999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      |++|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++.. ||++++|++|++++.+++++
T Consensus       140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~  218 (236)
T TIGR03864       140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAE  218 (236)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHH
Confidence            99999999999999999999999999999999999999876568999999999999975 99999999999999998887


Q ss_pred             HHHh
Q 018938          261 VKEA  264 (348)
Q Consensus       261 ~~~~  264 (348)
                      +...
T Consensus       219 ~~~~  222 (236)
T TIGR03864       219 LRGA  222 (236)
T ss_pred             HHHH
Confidence            7653

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-46  Score=352.23  Aligned_cols=222  Identities=22%  Similarity=0.305  Sum_probs=174.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+++|+...    +..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         1 mi~~~~v~~~y~~~~----~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-   75 (288)
T PRK13643          1 MIKFEKVNYTYQPNS----PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK-   75 (288)
T ss_pred             CEEEEEEEEEeCCCC----cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccc-
Confidence            489999999995310    011369999999999999999999999999999999999999999999999986521100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCc--cccccchHHHHHhccC--CCCH----HHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMIFGVA--GIDP----QRRAELIKVLDID---LSWRMHKVSDGQ  178 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~----~~~~~~l~~l~l~---~~~~~~~LSgGq  178 (348)
                            ......+++.++|++++.  .++.....+++.++..  +...    .++.++++.+++.   .++.+.+|||||
T Consensus        76 ------~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq  149 (288)
T PRK13643         76 ------QKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQ  149 (288)
T ss_pred             ------cccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHH
Confidence                  000112345566665543  2222222233333221  2222    3456778888984   367889999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||||++|++|++++.|++
T Consensus       150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~  228 (288)
T PRK13643        150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP  228 (288)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            9999999999999999999999999999999999999999875 489999999999999999999999999999999999


Q ss_pred             hHHHH
Q 018938          259 DKVKE  263 (348)
Q Consensus       259 ~~~~~  263 (348)
                      +++..
T Consensus       229 ~~~~~  233 (288)
T PRK13643        229 SDVFQ  233 (288)
T ss_pred             HHHHc
Confidence            98865

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-46  Score=365.58  Aligned_cols=231  Identities=19%  Similarity=0.278  Sum_probs=180.3

Q ss_pred             CeEEEeceEEEecCCCCC---------------CCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC
Q 018938           29 PTVEINALKFTYPGIDGH---------------PPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP   93 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~---------------~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~   93 (348)
                      .+|+++||+|.|+....+               +..+...+|+++||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus         3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s   82 (400)
T PRK10070          3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR   82 (400)
T ss_pred             cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence            368888888888642100               00123348999999999999999999999999999999999999999


Q ss_pred             ceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC
Q 018938           94 EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID  166 (348)
Q Consensus        94 G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~  166 (348)
                      |+|.++|.++......    .   .....++.++|++++..++...+..+++ +..  .+..    .+++.++++.+++.
T Consensus        83 G~I~i~G~~i~~~~~~----~---l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~  155 (400)
T PRK10070         83 GQVLIDGVDIAKISDA----E---LREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE  155 (400)
T ss_pred             CEEEECCEECCcCCHH----H---HHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence            9999999865321100    0   0001123466766665555555554433 221  1222    23456788889986


Q ss_pred             --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                        .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.++.++.|+|||+||||++++..+||++
T Consensus       156 ~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri  235 (400)
T PRK10070        156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI  235 (400)
T ss_pred             hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE
Confidence              467899999999999999999999999999999999999999999999999987666899999999999999999999


Q ss_pred             EEEcCCEEeeecChhHHHHhhh
Q 018938          245 VYVAHGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       245 ~~l~~G~i~~~g~~~~~~~~~~  266 (348)
                      ++|++|+++..|+++++...+.
T Consensus       236 ~vL~~G~i~~~g~~~~l~~~~~  257 (400)
T PRK10070        236 AIMQNGEVVQVGTPDEILNNPA  257 (400)
T ss_pred             EEEECCEEEecCCHHHHHhCcc
Confidence            9999999999999998876543

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.6e-46  Score=343.62  Aligned_cols=216  Identities=21%  Similarity=0.325  Sum_probs=174.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++|++++|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         1 ~l~~~~l~~~~~---------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-   70 (240)
T PRK09493          1 MIEFKNVSKHFG---------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKV-   70 (240)
T ss_pred             CEEEEeEEEEEC---------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCh-
Confidence            478999999994         3579999999999999999999999999999999999999999999999986432100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AGID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                              ....+++.++|.++....+...+..+.+ +..   ....    .+++.++++.+++.  .++++.+||||||
T Consensus        71 --------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  142 (240)
T PRK09493         71 --------DERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQ  142 (240)
T ss_pred             --------hHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHH
Confidence                    0012234456665554444334443322 211   1112    13456788888885  3678899999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      ||++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|++++.|+++
T Consensus       143 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  221 (240)
T PRK09493        143 QRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQ  221 (240)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHH
Confidence            999999999999999999999999999999999999999864 4899999999999999999999999999999999988


Q ss_pred             HHHHh
Q 018938          260 KVKEA  264 (348)
Q Consensus       260 ~~~~~  264 (348)
                      ++.+.
T Consensus       222 ~~~~~  226 (240)
T PRK09493        222 VLIKN  226 (240)
T ss_pred             HHhcC
Confidence            87653

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-46  Score=350.88  Aligned_cols=218  Identities=21%  Similarity=0.348  Sum_probs=175.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|++.      +...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... 
T Consensus         3 ~~l~~~~l~~~~~~~------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-   75 (279)
T PRK13650          3 NIIEVKNLTFKYKED------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEN-   75 (279)
T ss_pred             ceEEEEeEEEEcCCC------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCc-
Confidence            479999999999531      1246999999999999999999999999999999999999999999999998652210 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                ....++.++|++++.. .....+..+ +.++.  .+.+.    +++.++++.+++.  .++.+.+|||||
T Consensus        76 ----------~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq  145 (279)
T PRK13650         76 ----------VWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQ  145 (279)
T ss_pred             ----------HHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHH
Confidence                      0123345666655432 222334433 32221  12222    3456788889986  467899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++. +||++++|++|+++..|++
T Consensus       146 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~  224 (279)
T PRK13650        146 KQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTP  224 (279)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCH
Confidence            999999999999999999999999999999999999999997666999999999999995 7999999999999999999


Q ss_pred             hHHHHh
Q 018938          259 DKVKEA  264 (348)
Q Consensus       259 ~~~~~~  264 (348)
                      +++...
T Consensus       225 ~~~~~~  230 (279)
T PRK13650        225 RELFSR  230 (279)
T ss_pred             HHHHcC
Confidence            887654

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.4e-47  Score=319.99  Aligned_cols=228  Identities=23%  Similarity=0.330  Sum_probs=187.7

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      +.|+++||.|+|         |...+|++|||+-.+|+++.|||.|||||||+||||.=+..|+.|.|.++|+.+.....
T Consensus         5 ~~l~v~dlHK~~---------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~   75 (256)
T COG4598           5 NALEVEDLHKRY---------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRD   75 (256)
T ss_pred             cceehhHHHhhc---------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeC
Confidence            469999999999         45789999999999999999999999999999999999999999999999986532211


Q ss_pred             ccccCcccc----cchhhhhhhhhcCCCccccccchHHHHHh-cc---CCCC----HHHHHHHHHHcCCC--cCccCCCC
Q 018938          109 LTSSGDLSY----LGGEWRREVAFAGFEVPIQMDVSAEKMIF-GV---AGID----PQRRAELIKVLDID--LSWRMHKV  174 (348)
Q Consensus       109 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~L  174 (348)
                        ..+.+.-    .-+.++.+.+++++.+.++..++.-++.. ..   .+.+    .+++..++..+|+.  .+.+|..|
T Consensus        76 --~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~L  153 (256)
T COG4598          76 --KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHL  153 (256)
T ss_pred             --CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCcccc
Confidence              1121111    11234566777777777766666544332 11   1222    24556788889986  36789999


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||||+||++|||||+.+|+++|+|||||+|||+...+++..+++++++ |+|+++|||.|.|+..++++|++|++|.|-+
T Consensus       154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE  232 (256)
T COG4598         154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEE  232 (256)
T ss_pred             CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence            999999999999999999999999999999999999999999999865 9999999999999999999999999999999


Q ss_pred             ecChhHHHHhhhhh
Q 018938          255 AMPMDKVKEASKLS  268 (348)
Q Consensus       255 ~g~~~~~~~~~~~~  268 (348)
                      .|+|++++.++...
T Consensus       233 ~G~P~qvf~nP~S~  246 (256)
T COG4598         233 EGPPEQVFGNPQSP  246 (256)
T ss_pred             cCChHHHhcCCCCH
Confidence            99999999876543

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1.3e-46  Score=339.96  Aligned_cols=212  Identities=20%  Similarity=0.264  Sum_probs=168.4

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|+         ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+...... 
T Consensus         1 l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-   70 (222)
T cd03224           1 LEVENLNAGYG---------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH-   70 (222)
T ss_pred             CEEeeEEeecC---------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHH-
Confidence            47899999994         35799999999999999999999999999999999999999999999999764221100 


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC--CHHHHHHHHHHc-CCC--cCccCCCCCHHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI--DPQRRAELIKVL-DID--LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~--~~~~~~~~l~~l-~l~--~~~~~~~LSgGqrQRv  182 (348)
                               ...++.++|+++....+...+..+.+ +..  ...  ......++++.+ ++.  .++++.+|||||||||
T Consensus        71 ---------~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv  141 (222)
T cd03224          71 ---------ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQML  141 (222)
T ss_pred             ---------HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHH
Confidence                     01123456665554444444444332 221  111  122345566666 343  4678899999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  262 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  262 (348)
                      +|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|++|+++..++++++.
T Consensus       142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            999999999999999999999999999999999999865 5899999999999999999999999999999988877654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=9.3e-47  Score=340.15  Aligned_cols=209  Identities=27%  Similarity=0.429  Sum_probs=167.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++|++++|++..     ...++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...   
T Consensus         1 ~l~~~~v~~~~~~~~-----~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---   72 (218)
T cd03266           1 MITADALTKRFRDVK-----KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE---   72 (218)
T ss_pred             CeEEEEEEEecCCCC-----ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC---
Confidence            478999999995310     012799999999999999999999999999999999999999999999999764211   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                               ...+++.++|.++...++...+..+.+ +.  ..+..    ..++.++++.+++.  .++++.+|||||||
T Consensus        73 ---------~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  143 (218)
T cd03266          73 ---------PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQ  143 (218)
T ss_pred             ---------HHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHH
Confidence                     012344566666555444444444332 11  11222    23456788889886  36788999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |++|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|++++.|
T Consensus       144 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            99999999999999999999999999999999999999864 5899999999999999999999999999997643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-46  Score=345.46  Aligned_cols=214  Identities=27%  Similarity=0.405  Sum_probs=173.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+         ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         2 ~l~~~~l~~~~~---------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~-   71 (258)
T PRK13548          2 MLEARNLSVRLG---------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP-   71 (258)
T ss_pred             eEEEEeEEEEeC---------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH-
Confidence            589999999994         3579999999999999999999999999999999999999999999999975421100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC----CHHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI----DPQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                ..+++.++|+++........+..+.+ +..  ...    ....+.++++.+++.  .++.+.+|||||||
T Consensus        72 ----------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~q  141 (258)
T PRK13548         72 ----------AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQ  141 (258)
T ss_pred             ----------HHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence                      11223455655544333344444432 221  111    123456788888885  36789999999999


Q ss_pred             HHHHHHHHc------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          181 RVQICMGLL------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       181 Rv~lAraL~------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||+|||||+      .+|++|||||||+|||+.++..+.++|+++.++.|.|||++|||++++..+||++++|++|+++.
T Consensus       142 rv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  221 (258)
T PRK13548        142 RVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA  221 (258)
T ss_pred             HHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence            999999999      59999999999999999999999999999874568999999999999999999999999999999


Q ss_pred             ecChhHHHH
Q 018938          255 AMPMDKVKE  263 (348)
Q Consensus       255 ~g~~~~~~~  263 (348)
                      .++++++..
T Consensus       222 ~~~~~~~~~  230 (258)
T PRK13548        222 DGTPAEVLT  230 (258)
T ss_pred             eCCHHHHhC
Confidence            998877654

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=9.5e-47  Score=337.14  Aligned_cols=199  Identities=26%  Similarity=0.402  Sum_probs=160.9

Q ss_pred             EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938           32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS  111 (348)
Q Consensus        32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~  111 (348)
                      +++||+++|++        .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..      
T Consensus         1 ~~~~l~~~~~~--------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------   66 (205)
T cd03226           1 RIENISFSYKK--------GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA------   66 (205)
T ss_pred             CcccEEEEeCC--------cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh------
Confidence            36899999942        1579999999999999999999999999999999999999999999999976421      


Q ss_pred             cCcccccchhhhhhhhhcCCCccc-cccchHHHHH-hcc--CCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938          112 SGDLSYLGGEWRREVAFAGFEVPI-QMDVSAEKMI-FGV--AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC  185 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA  185 (348)
                              ..+++.++|.+++... ....+..+.+ +..  ......++.++++.+++.  .++++.+||||||||++||
T Consensus        67 --------~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  138 (205)
T cd03226          67 --------KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIA  138 (205)
T ss_pred             --------HHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHH
Confidence                    0122345555444311 1122333332 221  112234667889999986  4678999999999999999


Q ss_pred             HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|+++
T Consensus       139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            999999999999999999999999999999999865 4899999999999999999999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=7.8e-47  Score=340.64  Aligned_cols=209  Identities=28%  Similarity=0.425  Sum_probs=162.6

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|++..     +.+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...... 
T Consensus         1 l~~~~l~~~~~~~~-----~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~-   74 (218)
T cd03255           1 IELKNLSKTYGGGG-----EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEK-   74 (218)
T ss_pred             CeEeeeEEEecCCC-----cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchh-
Confidence            46899999995200     015799999999999999999999999999999999999999999999999764221100 


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                         .   .....++.++|+++....+...+..+.+ +.  ..+..    .+++.++++.+++.  .++++.+||||||||
T Consensus        75 ---~---~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  148 (218)
T cd03255          75 ---E---LAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQR  148 (218)
T ss_pred             ---H---HHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHH
Confidence               0   0001123456665554444444444332 21  11221    23456788888886  367889999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      |+|||||+.+|++|||||||+|||+.++..+.++|++++++.|+|||+||||++++. +||++++|++|++
T Consensus       149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            999999999999999999999999999999999999987656899999999999997 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-46  Score=350.37  Aligned_cols=223  Identities=20%  Similarity=0.292  Sum_probs=175.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|++..    ...+++|+||||+|++||+++|+||||||||||+++|+|+++|+.|+|.++|.++..... 
T Consensus         2 ~l~~~~l~~~y~~~~----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~-   76 (286)
T PRK13646          2 TIRFDNVSYTYQKGT----PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK-   76 (286)
T ss_pred             EEEEEEEEEEECCCC----ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccc-
Confidence            489999999995210    012469999999999999999999999999999999999999999999999986532110 


Q ss_pred             cccCcccccchhhhhhhhhcCCCc--cccccchHH-HHHhcc--CCCCH----HHHHHHHHHcCCC---cCccCCCCCHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAE-KMIFGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDG  177 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~--~~~~~----~~~~~~l~~l~l~---~~~~~~~LSgG  177 (348)
                            ......+++.++|++++.  .++. .+.. ++.++.  .+.+.    +++.++++.+++.   .++.+.+||||
T Consensus        77 ------~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG  149 (286)
T PRK13646         77 ------DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGG  149 (286)
T ss_pred             ------cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence                  000012345667765543  1222 2333 333321  12222    3456788888985   25679999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+|||||+.+|++|||||||+|||+.++..+.++|+++.++.|.|||+||||++++..+|||+++|++|++++.|+
T Consensus       150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~  229 (286)
T PRK13646        150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS  229 (286)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence            99999999999999999999999999999999999999999976668999999999999999999999999999999999


Q ss_pred             hhHHHHh
Q 018938          258 MDKVKEA  264 (348)
Q Consensus       258 ~~~~~~~  264 (348)
                      ++++...
T Consensus       230 ~~~~~~~  236 (286)
T PRK13646        230 PKELFKD  236 (286)
T ss_pred             HHHHHhC
Confidence            9887653

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=8.7e-47  Score=362.94  Aligned_cols=210  Identities=20%  Similarity=0.290  Sum_probs=173.1

Q ss_pred             CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938           50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA  129 (348)
Q Consensus        50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (348)
                      +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......       ......++.++|+
T Consensus         4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~-------~~~~~rr~~i~~v   76 (363)
T TIGR01186         4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV-------ELREVRRKKIGMV   76 (363)
T ss_pred             CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHH-------HHHHHHhCcEEEE
Confidence            356799999999999999999999999999999999999999999999999875321110       0000013467777


Q ss_pred             CCCccccccchHHHH-Hhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeecc
Q 018938          130 GFEVPIQMDVSAEKM-IFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI  200 (348)
Q Consensus       130 ~~~~~~~~~~~~~~~-~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEP  200 (348)
                      +++..++..+++.++ .+..  .++..    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++||||||
T Consensus        77 ~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP  156 (363)
T TIGR01186        77 FQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA  156 (363)
T ss_pred             ECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            776666666565543 3321  22222    3466788888986  4778999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhhh
Q 018938          201 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       201 tsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  266 (348)
                      |++||+.++..+.+.|.++.++.|+|||+||||++++..+||+|++|++|+++..|+++++...+.
T Consensus       157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~  222 (363)
T TIGR01186       157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPA  222 (363)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcc
Confidence            999999999999999999977679999999999999999999999999999999999999876543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.5e-46  Score=341.95  Aligned_cols=213  Identities=23%  Similarity=0.310  Sum_probs=170.5

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... 
T Consensus         1 l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-   70 (232)
T cd03218           1 LRAENLSKRYG---------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH-   70 (232)
T ss_pred             CeEEEEEEEeC---------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHh-
Confidence            47899999994         35799999999999999999999999999999999999999999999999764221100 


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                               ...+..++|.++....+...+..+.+ +..  ....    ..++.++++.+++.  .++.+.+||||||||
T Consensus        71 ---------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  141 (232)
T cd03218          71 ---------KRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRR  141 (232)
T ss_pred             ---------HHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence                     00122355555544444444443322 211  1111    12456788888886  367789999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      |+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|+++..++.+++
T Consensus       142 l~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  220 (232)
T cd03218         142 VEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI  220 (232)
T ss_pred             HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence            9999999999999999999999999999999999999875 589999999999999999999999999999999988776


Q ss_pred             HH
Q 018938          262 KE  263 (348)
Q Consensus       262 ~~  263 (348)
                      ..
T Consensus       221 ~~  222 (232)
T cd03218         221 AA  222 (232)
T ss_pred             hc
Confidence            53

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=2.1e-46  Score=340.57  Aligned_cols=213  Identities=22%  Similarity=0.309  Sum_probs=170.7

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||++.|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... 
T Consensus         1 l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-   70 (230)
T TIGR03410         1 LEVSNLNVYYG---------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH-   70 (230)
T ss_pred             CEEEeEEEEeC---------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHH-
Confidence            47899999994         35799999999999999999999999999999999999999999999999764321100 


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC-HHHHHHHHHHcC-CC--cCccCCCCCHHHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID-PQRRAELIKVLD-ID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~l~~l~-l~--~~~~~~~LSgGqrQRv~  183 (348)
                               ...++.++|.++....+...+..+.+ +..  .... .+...++++.++ +.  .++++.+||||||||++
T Consensus        71 ---------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~  141 (230)
T TIGR03410        71 ---------ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLA  141 (230)
T ss_pred             ---------HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHH
Confidence                     01123456665554444444444332 221  1111 233456677665 33  46789999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  262 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  262 (348)
                      |||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++||+++++..+||++++|++|++++.++.+++.
T Consensus       142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~  220 (230)
T TIGR03410       142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD  220 (230)
T ss_pred             HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence            9999999999999999999999999999999999987655899999999999999999999999999999999988763

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=3.9e-46  Score=343.00  Aligned_cols=222  Identities=21%  Similarity=0.292  Sum_probs=174.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+         ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+......
T Consensus         3 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~   73 (250)
T PRK11264          3 AIEVKNLVKKFH---------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL   73 (250)
T ss_pred             cEEEeceEEEEC---------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccc
Confidence            699999999994         35799999999999999999999999999999999999999999999999865321000


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                      .. ..  .....++..++|+++....+...+..+.+ +.   .....    .+++.++++.+++.  .++++.+||||||
T Consensus        74 ~~-~~--~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~  150 (250)
T PRK11264         74 SQ-QK--GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ  150 (250)
T ss_pred             cc-hh--hHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence            00 00  00012234566665554444333443322 21   11112    13456778888886  3678899999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.|||++|||++++..+||++++|++|++++.++++
T Consensus       151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~  229 (250)
T PRK11264        151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK  229 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999875 4899999999999999999999999999999999998


Q ss_pred             HHHHh
Q 018938          260 KVKEA  264 (348)
Q Consensus       260 ~~~~~  264 (348)
                      ++...
T Consensus       230 ~~~~~  234 (250)
T PRK11264        230 ALFAD  234 (250)
T ss_pred             HHhcC
Confidence            87654

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-46  Score=342.87  Aligned_cols=235  Identities=19%  Similarity=0.276  Sum_probs=192.7

Q ss_pred             CeEEEeceEEEecCCC---------CC------CCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC
Q 018938           29 PTVEINALKFTYPGID---------GH------PPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP   93 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~---------~~------~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~   93 (348)
                      ..|+++||+|-|+...         |.      ...|-...++|+||+|++||++.|+|-||||||||+|+|++++.|+.
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~   82 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR   82 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence            3589999999996421         10      01233456899999999999999999999999999999999999999


Q ss_pred             ceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC
Q 018938           94 EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID  166 (348)
Q Consensus        94 G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~  166 (348)
                      |+|.++|.++..-..    ..   +....++.+++++|++.+.+..++.+ ..|++  .+.+.    +++.++++.+|+.
T Consensus        83 G~ilv~g~di~~~~~----~~---Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~  155 (386)
T COG4175          83 GEILVDGKDIAKLSA----AE---LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE  155 (386)
T ss_pred             ceEEECCcchhcCCH----HH---HHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence            999999987543211    01   11123456788877777777666544 44554  24332    3456788888986


Q ss_pred             --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                        .+++|++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.++.++.++||||||||++++.++.|||
T Consensus       156 ~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rI  235 (386)
T COG4175         156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRI  235 (386)
T ss_pred             hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceE
Confidence              478999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCEEeeecChhHHHHhhhhhhH
Q 018938          245 VYVAHGKLQLAMPMDKVKEASKLSLM  270 (348)
Q Consensus       245 ~~l~~G~i~~~g~~~~~~~~~~~~~~  270 (348)
                      .+|++|+|+..|+|+++..++...+.
T Consensus       236 aimkdG~ivQ~Gtp~eIl~~PAndYV  261 (386)
T COG4175         236 AIMKDGEIVQVGTPEEILLNPANDYV  261 (386)
T ss_pred             EEecCCeEEEeCCHHHHHcCccHHHH
Confidence            99999999999999999987765543

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-46  Score=329.48  Aligned_cols=218  Identities=20%  Similarity=0.250  Sum_probs=183.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+..|+         ..++|++|||++++||+++|+|+||||||||||+|+|+.++.+|+|.++|+++.....
T Consensus         2 ~mL~v~~l~~~YG---------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~   72 (237)
T COG0410           2 PMLEVENLSAGYG---------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP   72 (237)
T ss_pred             CceeEEeEeeccc---------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCH
Confidence            5799999999994         5789999999999999999999999999999999999999999999999998754322


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-ccCCC----CHH-HHHHHHHHcC-CC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVAGI----DPQ-RRAELIKVLD-ID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~-~~~~~l~~l~-l~--~~~~~~~LSgGqr  179 (348)
                      .          ...+..++|+++....+..+++++++. +....    ... ..+++.+.|- +.  .+++.++||||||
T Consensus        73 ~----------~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQ  142 (237)
T COG0410          73 H----------ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQ  142 (237)
T ss_pred             H----------HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHH
Confidence            1          123455777877777778888877653 22111    111 1445565553 22  4677899999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |.++|||||+.+|++|+|||||.||-|.-.++|++.|+++.++.|.||++|.++..++.+++||.++|.+|+|+..|+.+
T Consensus       143 QMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~  222 (237)
T COG0410         143 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAA  222 (237)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHH
Confidence            99999999999999999999999999999999999999998777899999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 018938          260 KVKEAS  265 (348)
Q Consensus       260 ~~~~~~  265 (348)
                      ++...+
T Consensus       223 eL~~~~  228 (237)
T COG0410         223 ELLADP  228 (237)
T ss_pred             HHhcCH
Confidence            987654

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=2.7e-46  Score=342.48  Aligned_cols=213  Identities=18%  Similarity=0.262  Sum_probs=171.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++|++++|+         ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         2 ~i~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~-   71 (242)
T TIGR03411         2 ILYLEGLSVSFD---------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE-   71 (242)
T ss_pred             eEEEEeeEEEcC---------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCH-
Confidence            689999999995         3579999999999999999999999999999999999999999999999975421100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----------CC----CHHHHHHHHHHcCCC--cCccCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----------GI----DPQRRAELIKVLDID--LSWRMH  172 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~----~~~~~~~~l~~l~l~--~~~~~~  172 (348)
                               ....+..++|.++....+...+..+++ +...          ..    ...++.++++.+++.  .++.+.
T Consensus        72 ---------~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  142 (242)
T TIGR03411        72 ---------HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG  142 (242)
T ss_pred             ---------HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh
Confidence                     001122355555554444444444322 1110          00    123456788888886  367889


Q ss_pred             CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      +|||||+|||+|||||+.+|++|||||||+|||+.++..++++|+++.+  +.|||++||+++++..+||++++|++|++
T Consensus       143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~  220 (242)
T TIGR03411       143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSV  220 (242)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence            9999999999999999999999999999999999999999999999854  68999999999999999999999999999


Q ss_pred             eeecChhHHHH
Q 018938          253 QLAMPMDKVKE  263 (348)
Q Consensus       253 ~~~g~~~~~~~  263 (348)
                      ++.++++++..
T Consensus       221 ~~~~~~~~~~~  231 (242)
T TIGR03411       221 LAEGSLDQVQA  231 (242)
T ss_pred             EeeCCHHHHhc
Confidence            99999887754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.6e-46  Score=347.65  Aligned_cols=216  Identities=25%  Similarity=0.367  Sum_probs=174.3

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+++|++        ...+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|..+.... 
T Consensus         2 ~~l~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-   72 (277)
T PRK13652          2 HLIETRDLCYSYSG--------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN-   72 (277)
T ss_pred             ceEEEEEEEEEeCC--------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-
Confidence            36999999999952        346999999999999999999999999999999999999999999999998642210 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc-ccccchHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                ...++..++++++... .....++.+.+ +..  ...+.    +++.++++.+++.  .++.+.+|||||
T Consensus        73 ----------~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq  142 (277)
T PRK13652         73 ----------IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGE  142 (277)
T ss_pred             ----------HHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHH
Confidence                      0122344555544431 11123333322 211  12222    2456788888885  467899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      |||++|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++..+|||+++|++|++++.|++
T Consensus       143 ~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~  222 (277)
T PRK13652        143 KKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTV  222 (277)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCH
Confidence            99999999999999999999999999999999999999999766689999999999999999999999999999999999


Q ss_pred             hHHHH
Q 018938          259 DKVKE  263 (348)
Q Consensus       259 ~~~~~  263 (348)
                      +++.+
T Consensus       223 ~~~~~  227 (277)
T PRK13652        223 EEIFL  227 (277)
T ss_pred             HHHhc
Confidence            88864

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-46  Score=341.22  Aligned_cols=215  Identities=20%  Similarity=0.306  Sum_probs=168.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|++..     ...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.....
T Consensus         4 ~~l~~~~l~~~~~~~~-----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~   78 (233)
T PRK11629          4 ILLQCDNLCKRYQEGS-----VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSS   78 (233)
T ss_pred             ceEEEEeEEEEcCCCC-----cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCH
Confidence            5799999999995310     01469999999999999999999999999999999999999999999999986532110


Q ss_pred             ccccCcccccchhh-hhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEW-RREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                      .    ..    ..+ ++.++|+++...++...+..+.+ +.  .....    .+++.++++.+++.  .++.+.+|||||
T Consensus        79 ~----~~----~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~  150 (233)
T PRK11629         79 A----AK----AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGE  150 (233)
T ss_pred             H----HH----HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence            0    00    001 13456665554444444444332 21  11212    23456788889985  366789999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||++|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++..+ |++++|++|++++.++
T Consensus       151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEec
Confidence            99999999999999999999999999999999999999998765689999999999999875 6999999999988765

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=1.3e-46  Score=339.74  Aligned_cols=210  Identities=27%  Similarity=0.404  Sum_probs=169.6

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||++.|++       +.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...    
T Consensus         1 l~~~~l~~~~~~-------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----   69 (220)
T cd03263           1 LQIRNLTKTYKK-------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD----   69 (220)
T ss_pred             CEEEeeEEEeCC-------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc----
Confidence            478999999952       126799999999999999999999999999999999999999999999999764211    


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                              ...+++.++|++++...+...+..+.+ +.  .....    .+++.++++.+++.  .++++.+||||||||
T Consensus        70 --------~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  141 (220)
T cd03263          70 --------RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRK  141 (220)
T ss_pred             --------hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHH
Confidence                    012334566665554444344444332 11  11222    13456788888885  367789999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      |+|||||+.+|++|||||||++||+.++..+.++|+++++  +.|||++|||++++..+||++++|++|++++.++++++
T Consensus       142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            9999999999999999999999999999999999999864  58999999999999999999999999999998887653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=3.3e-46  Score=346.92  Aligned_cols=226  Identities=17%  Similarity=0.290  Sum_probs=174.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+...+....+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   82 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY   82 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence            57999999999952100000013579999999999999999999999999999999999999999999999976531110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH-hc--c-CCCC----HHHHHHHHHHcCCC---cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI-FG--V-AGID----PQRRAELIKVLDID---LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~--~-~~~~----~~~~~~~l~~l~l~---~~~~~~~LS  175 (348)
                                 ...++.++|++++..  +....+..+.+ +.  . ....    .+.+.++++.+++.   .+.++.+||
T Consensus        83 -----------~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  151 (267)
T PRK15112         83 -----------SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLA  151 (267)
T ss_pred             -----------hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcC
Confidence                       011223455544322  12222332221 11  1 1111    13456788889984   256789999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|++|||||||++||+.++..+.++|.++.++.|.|||++||+++++..+||++++|++|+++..
T Consensus       152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~  231 (267)
T PRK15112        152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER  231 (267)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence            99999999999999999999999999999999999999999998766689999999999999999999999999999999


Q ss_pred             cChhHHHHhh
Q 018938          256 MPMDKVKEAS  265 (348)
Q Consensus       256 g~~~~~~~~~  265 (348)
                      ++++++.+.+
T Consensus       232 ~~~~~~~~~~  241 (267)
T PRK15112        232 GSTADVLASP  241 (267)
T ss_pred             CCHHHHhcCC
Confidence            9988887543

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=1.5e-46  Score=340.93  Aligned_cols=209  Identities=24%  Similarity=0.329  Sum_probs=167.1

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----cCCCceEEEcCeeccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH-----MVEPEMVKVLGRSAFH  105 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~-----~~~~G~i~i~G~~~~~  105 (348)
                      |+++||+++|+         .+++|+++||+|++||+++|+||||||||||+++|+|++     +|++|+|.++|.++..
T Consensus         1 i~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~   71 (227)
T cd03260           1 IELRDLNVYYG---------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD   71 (227)
T ss_pred             CEEEEEEEEcC---------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhh
Confidence            47899999994         357999999999999999999999999999999999999     8999999999976422


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC-C----HHHHHHHHHHcCCCc--Ccc--CCC
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI-D----PQRRAELIKVLDIDL--SWR--MHK  173 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~----~~~~~~~l~~l~l~~--~~~--~~~  173 (348)
                      ...     .    ...+++.++|+++....+ ..+..+.+ +..  ... .    .+++.++++.+++..  ++.  +.+
T Consensus        72 ~~~-----~----~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  141 (227)
T cd03260          72 LDV-----D----VLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALG  141 (227)
T ss_pred             cch-----H----HHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCccc
Confidence            100     0    012334566665554443 44444332 211  111 1    234567888888862  444  599


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++  .|||++|||++++..+||++++|++|+++
T Consensus       142 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~  219 (227)
T cd03260         142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLV  219 (227)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence            9999999999999999999999999999999999999999999998653  89999999999999999999999999999


Q ss_pred             eecChhH
Q 018938          254 LAMPMDK  260 (348)
Q Consensus       254 ~~g~~~~  260 (348)
                      +.|++++
T Consensus       220 ~~g~~~~  226 (227)
T cd03260         220 EFGPTEQ  226 (227)
T ss_pred             EecCccc
Confidence            9887654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.8e-46  Score=343.96  Aligned_cols=223  Identities=20%  Similarity=0.247  Sum_probs=175.0

Q ss_pred             cCCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEE
Q 018938           24 MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKV   98 (348)
Q Consensus        24 m~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i   98 (348)
                      |+...++|+++|++++|+         +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|     ++|+|.+
T Consensus         1 ~~~~~~~l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~   71 (254)
T PRK14273          1 MPKNEAIIETENLNLFYT---------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY   71 (254)
T ss_pred             CCCCCceEEEeeeEEEeC---------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEE
Confidence            344556899999999994         35799999999999999999999999999999999999986     4899999


Q ss_pred             cCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CC-CC----HHHHHHHHHHcCCC----
Q 018938           99 LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AG-ID----PQRRAELIKVLDID----  166 (348)
Q Consensus        99 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~~----~~~~~~~l~~l~l~----  166 (348)
                      +|.++.....         ....+++.++|++++...+. .++.+ +.+..  .. ..    .+.+.++++.+++.    
T Consensus        72 ~g~~i~~~~~---------~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~  141 (254)
T PRK14273         72 EGKNIYSNNF---------DILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK  141 (254)
T ss_pred             CCEecccccc---------cHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH
Confidence            9976421100         00123345666655543332 34443 22221  11 11    13345667777762    


Q ss_pred             --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                        .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++|||++++..+||++
T Consensus       142 ~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i  219 (254)
T PRK14273        142 DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRT  219 (254)
T ss_pred             HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEE
Confidence              366789999999999999999999999999999999999999999999999985 3 689999999999999999999


Q ss_pred             EEEcCCEEeeecChhHHHHhhhh
Q 018938          245 VYVAHGKLQLAMPMDKVKEASKL  267 (348)
Q Consensus       245 ~~l~~G~i~~~g~~~~~~~~~~~  267 (348)
                      ++|++|+++..|+++++...+.+
T Consensus       220 ~~l~~G~i~~~g~~~~~~~~~~~  242 (254)
T PRK14273        220 AFFLNGCIEEESSTDELFFNPKN  242 (254)
T ss_pred             EEEECCEEEEeCCHHHHHhCCCC
Confidence            99999999999999988765443

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-46  Score=341.87  Aligned_cols=215  Identities=20%  Similarity=0.260  Sum_probs=171.0

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus         4 ~~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~   74 (237)
T PRK11614          4 VMLSFDKVSAHYG---------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT   74 (237)
T ss_pred             cEEEEEeEEEeeC---------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH
Confidence            4799999999994         3679999999999999999999999999999999999999999999999976422110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC--HHHHHHHHHHc-CCC--cCccCCCCCHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID--PQRRAELIKVL-DID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~--~~~~~~~l~~l-~l~--~~~~~~~LSgGqrQ  180 (348)
                                ....++.++|+++....+...+..+.+ +..  ....  ...+.++++.+ ++.  .+.++.+|||||||
T Consensus        75 ----------~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~q  144 (237)
T PRK11614         75 ----------AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQ  144 (237)
T ss_pred             ----------HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHH
Confidence                      001233455665544444334444332 211  1111  12344556666 343  35678999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      |++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|++++.|++++
T Consensus       145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  223 (237)
T PRK11614        145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDA  223 (237)
T ss_pred             HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHH
Confidence            99999999999999999999999999999999999999865 48999999999999999999999999999999999988


Q ss_pred             HHH
Q 018938          261 VKE  263 (348)
Q Consensus       261 ~~~  263 (348)
                      +..
T Consensus       224 ~~~  226 (237)
T PRK11614        224 LLA  226 (237)
T ss_pred             Hhc
Confidence            764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-46  Score=352.73  Aligned_cols=230  Identities=21%  Similarity=0.328  Sum_probs=176.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc--
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT--  107 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~--  107 (348)
                      +|+++||+++|++..    +...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+.....  
T Consensus         2 ~i~~~~l~~~y~~~~----~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~   77 (305)
T PRK13651          2 QIKVKNIVKIFNKKL----PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKT   77 (305)
T ss_pred             EEEEEEEEEEECCCC----CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccc
Confidence            489999999995310    01136999999999999999999999999999999999999999999999986431100  


Q ss_pred             ----------cccccCccc-ccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--
Q 018938          108 ----------ALTSSGDLS-YLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--  166 (348)
Q Consensus       108 ----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--  166 (348)
                                ......... .....+++.++|++++.. .....++.+ +.++.  .+...    .++.++++.+++.  
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~  157 (305)
T PRK13651         78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES  157 (305)
T ss_pred             ccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh
Confidence                      000000000 001124456777766431 112234443 33332  12222    3467788999985  


Q ss_pred             -cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938          167 -LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV  245 (348)
Q Consensus       167 -~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~  245 (348)
                       .++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||||+
T Consensus       158 ~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~  236 (305)
T PRK13651        158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTI  236 (305)
T ss_pred             hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEE
Confidence             3678999999999999999999999999999999999999999999999999874 59999999999999999999999


Q ss_pred             EEcCCEEeeecChhHHHHh
Q 018938          246 YVAHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       246 ~l~~G~i~~~g~~~~~~~~  264 (348)
                      +|++|++++.|+++++...
T Consensus       237 vl~~G~i~~~g~~~~~~~~  255 (305)
T PRK13651        237 FFKDGKIIKDGDTYDILSD  255 (305)
T ss_pred             EEECCEEEEECCHHHHhcC
Confidence            9999999999999988654

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-46  Score=341.10  Aligned_cols=214  Identities=22%  Similarity=0.276  Sum_probs=173.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         3 ~l~~~~l~~~~~---------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-   72 (241)
T PRK10895          3 TLTAKNLAKAYK---------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL-   72 (241)
T ss_pred             eEEEeCcEEEeC---------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH-
Confidence            699999999994         3579999999999999999999999999999999999999999999999976422110 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--C-CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--A-GID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                               ....+..++|+++....+...+..+.+ +..  . ..+    ...+.++++.+++.  .++++.+|||||+
T Consensus        73 ---------~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  143 (241)
T PRK10895         73 ---------HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGER  143 (241)
T ss_pred             ---------HHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHH
Confidence                     001233456665554444444444332 211  1 111    13456778888875  3677899999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++||+++++..+||++++|++|++++.++++
T Consensus       144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~  222 (241)
T PRK10895        144 RRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPT  222 (241)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHH
Confidence            999999999999999999999999999999999999999864 5899999999999999999999999999999999988


Q ss_pred             HHHH
Q 018938          260 KVKE  263 (348)
Q Consensus       260 ~~~~  263 (348)
                      ++..
T Consensus       223 ~~~~  226 (241)
T PRK10895        223 EILQ  226 (241)
T ss_pred             HHhc
Confidence            7754

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.3e-46  Score=353.93  Aligned_cols=231  Identities=18%  Similarity=0.244  Sum_probs=177.6

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||+++|++..    ....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus        19 ~~~l~~~nl~~~y~~~~----~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~   94 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQ----ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKK   94 (320)
T ss_pred             CceEEEEeEEEEeCCCC----cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccc
Confidence            46899999999995310    01246999999999999999999999999999999999999999999999997653210


Q ss_pred             c---c-ccc-CcccccchhhhhhhhhcCCCc--cccccchHH-HHHhcc--CCCCH----HHHHHHHHHcCCC---cCcc
Q 018938          108 A---L-TSS-GDLSYLGGEWRREVAFAGFEV--PIQMDVSAE-KMIFGV--AGIDP----QRRAELIKVLDID---LSWR  170 (348)
Q Consensus       108 ~---~-~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~--~~~~~----~~~~~~l~~l~l~---~~~~  170 (348)
                      .   . ... .........+++.++|++++.  .+... +.. ++.++.  .+.+.    .++.++++.+++.   .++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~  173 (320)
T PRK13631         95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS  173 (320)
T ss_pred             ccccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence            0   0 000 000000112345677776543  22222 333 333322  12222    3456788888985   3678


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++.+ .|.|||+||||++++..+||++++|++|
T Consensus       174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~vl~~G  252 (320)
T PRK13631        174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIVMDKG  252 (320)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence            899999999999999999999999999999999999999999999999864 5899999999999999999999999999


Q ss_pred             EEeeecChhHHHHh
Q 018938          251 KLQLAMPMDKVKEA  264 (348)
Q Consensus       251 ~i~~~g~~~~~~~~  264 (348)
                      ++++.|++++++..
T Consensus       253 ~i~~~g~~~~~~~~  266 (320)
T PRK13631        253 KILKTGTPYEIFTD  266 (320)
T ss_pred             EEEEeCCHHHHhcC
Confidence            99999999988653

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-46  Score=347.58  Aligned_cols=215  Identities=22%  Similarity=0.303  Sum_probs=170.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... 
T Consensus         1 ml~~~~l~~~~~---------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-   70 (271)
T PRK13638          1 MLATSDLWFRYQ---------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR-   70 (271)
T ss_pred             CeEEEEEEEEcC---------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccC-
Confidence            489999999994         3579999999999999999999999999999999999999999999999986521100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccc-cccchHH-HHHhc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPI-QMDVSAE-KMIFG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                          .    ...+++.++|+++.... ....+.. ++.+.  ..+...    .++.++++.+++.  .++++.+||||||
T Consensus        71 ----~----~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  142 (271)
T PRK13638         71 ----G----LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQK  142 (271)
T ss_pred             ----C----HHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHH
Confidence                0    01223445665544321 1112222 22221  112222    2345678888875  3677899999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      ||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|++++.|+++
T Consensus       143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~  221 (271)
T PRK13638        143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPG  221 (271)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999875 4899999999999999999999999999999999988


Q ss_pred             HHHH
Q 018938          260 KVKE  263 (348)
Q Consensus       260 ~~~~  263 (348)
                      ++..
T Consensus       222 ~~~~  225 (271)
T PRK13638        222 EVFA  225 (271)
T ss_pred             HHhc
Confidence            8754

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.7e-46  Score=337.51  Aligned_cols=205  Identities=23%  Similarity=0.370  Sum_probs=162.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++|++++|++        ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus         1 ~l~~~~l~~~~~~--------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~   72 (214)
T TIGR02673         1 MIEFHNVSKAYPG--------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR   72 (214)
T ss_pred             CEEEEeeeEEeCC--------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH
Confidence            4889999999941        35799999999999999999999999999999999999999999999999865321100


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                          .    ...+++.++|+++....+...+..+.+ +.  ..+..    .+++.++++.+++.  .++.+.+|||||||
T Consensus        73 ----~----~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  144 (214)
T TIGR02673        73 ----Q----LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQ  144 (214)
T ss_pred             ----H----HHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence                0    011234456665554444334443322 21  11111    23456788888885  35678999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      ||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|+
T Consensus       145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            99999999999999999999999999999999999999865 48999999999999999999999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7e-46  Score=346.70  Aligned_cols=216  Identities=24%  Similarity=0.410  Sum_probs=173.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||++.|+.       ..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus         4 ~~l~~~~l~~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~   76 (279)
T PRK13635          4 EIIRVEHISFRYPD-------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV   76 (279)
T ss_pred             ceEEEEEEEEEeCC-------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcH
Confidence            57999999999952       23569999999999999999999999999999999999999999999999986532110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                 ...++.++|++++.. .....+..+ +.+..  .+...    +++.++++.+++.  .++++.+|||||
T Consensus        77 -----------~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~  145 (279)
T PRK13635         77 -----------WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQ  145 (279)
T ss_pred             -----------HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHH
Confidence                       112334566655431 222233333 32221  11221    3456788888886  467899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++. .||++++|++|++++.|++
T Consensus       146 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~  224 (279)
T PRK13635        146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTP  224 (279)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCH
Confidence            999999999999999999999999999999999999999997666899999999999997 5999999999999999998


Q ss_pred             hHHHH
Q 018938          259 DKVKE  263 (348)
Q Consensus       259 ~~~~~  263 (348)
                      +++..
T Consensus       225 ~~~~~  229 (279)
T PRK13635        225 EEIFK  229 (279)
T ss_pred             HHHhc
Confidence            88764

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.9e-46  Score=343.50  Aligned_cols=224  Identities=20%  Similarity=0.333  Sum_probs=175.2

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc--c
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT--A  108 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~--~  108 (348)
                      |+++||+++|+         ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....  .
T Consensus         1 i~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~   71 (252)
T TIGR03005         1 VRFSDVTKRFG---------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRN   71 (252)
T ss_pred             CEEEEEEEEeC---------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence            47899999994         357999999999999999999999999999999999999999999999998653210  0


Q ss_pred             --ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CCCC----HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938          109 --LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AGID----PQRRAELIKVLDID--LSWRMHKVSD  176 (348)
Q Consensus       109 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~----~~~~~~~l~~l~l~--~~~~~~~LSg  176 (348)
                        ......  .....+++.++|+++...++...+..+.+ +..   ....    ...+.++++.+++.  .++.+.+|||
T Consensus        72 ~~~~~~~~--~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~  149 (252)
T TIGR03005        72 GPLVPADE--KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSG  149 (252)
T ss_pred             ccccccch--hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCH
Confidence              000000  00012334566665554444444444332 211   1112    13456778888885  3667899999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||+||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||++++|++|++++.|
T Consensus       150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  229 (252)
T TIGR03005       150 GQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQG  229 (252)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999987666899999999999999999999999999999999


Q ss_pred             ChhHHHHhh
Q 018938          257 PMDKVKEAS  265 (348)
Q Consensus       257 ~~~~~~~~~  265 (348)
                      +.+++....
T Consensus       230 ~~~~~~~~~  238 (252)
T TIGR03005       230 KPDEIFRQP  238 (252)
T ss_pred             CHHHHhcCC
Confidence            988876543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.3e-46  Score=343.85  Aligned_cols=213  Identities=24%  Similarity=0.376  Sum_probs=171.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++|++++|+         ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         2 ~l~~~~l~~~~~---------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-   71 (255)
T PRK11231          2 TLRTENLTVGYG---------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS-   71 (255)
T ss_pred             EEEEEeEEEEEC---------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCH-
Confidence            589999999994         3679999999999999999999999999999999999999999999999975421100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc------CCC----CHHHHHHHHHHcCCC--cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV------AGI----DPQRRAELIKVLDID--LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~----~~~~~~~~l~~l~l~--~~~~~~~LSg  176 (348)
                                ..+++.++|++++......++..+.+ ++.      ...    ...++.++++.+++.  .++++.+|||
T Consensus        72 ----------~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~  141 (255)
T PRK11231         72 ----------RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSG  141 (255)
T ss_pred             ----------HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCH
Confidence                      11223455555443333333443322 211      010    123456778888885  3678999999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||+|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|+++..+
T Consensus       142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~  220 (255)
T PRK11231        142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG  220 (255)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEc
Confidence            999999999999999999999999999999999999999999865 4899999999999999999999999999999999


Q ss_pred             ChhHHHH
Q 018938          257 PMDKVKE  263 (348)
Q Consensus       257 ~~~~~~~  263 (348)
                      +++++..
T Consensus       221 ~~~~~~~  227 (255)
T PRK11231        221 TPEEVMT  227 (255)
T ss_pred             CHHHhcC
Confidence            8887654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9e-46  Score=341.21  Aligned_cols=218  Identities=22%  Similarity=0.286  Sum_probs=172.0

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCe
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGR  101 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~  101 (348)
                      ..|+|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+|+|+|++.     |++|+|.++|+
T Consensus         3 ~~~~l~~~~l~~~~~---------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~   73 (253)
T PRK14242          3 SPPKMEARGLSFFYG---------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGE   73 (253)
T ss_pred             CCcEEEEeeeEEEEC---------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCE
Confidence            457899999999994         3579999999999999999999999999999999999864     57899999997


Q ss_pred             eccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCC-C----HHHHHHHHHHcCCC------c
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGI-D----PQRRAELIKVLDID------L  167 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~----~~~~~~~l~~l~l~------~  167 (348)
                      ++.... .        ....+++.++|+++....+.. +.. ++.+..  .+. .    .+++.++++.+++.      .
T Consensus        74 ~i~~~~-~--------~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  143 (253)
T PRK14242         74 NIYDPH-V--------DVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL  143 (253)
T ss_pred             Eccccc-c--------CHHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh
Confidence            642110 0        001223456666554433332 333 332221  111 1    23455677777763      2


Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++|||++++..+||++++|
T Consensus       144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l  221 (253)
T PRK14242        144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFF  221 (253)
T ss_pred             hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEE
Confidence            56789999999999999999999999999999999999999999999999984 3 789999999999999999999999


Q ss_pred             cCCEEeeecChhHHHHhh
Q 018938          248 AHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       248 ~~G~i~~~g~~~~~~~~~  265 (348)
                      ++|++++.|+++++....
T Consensus       222 ~~G~i~~~g~~~~~~~~~  239 (253)
T PRK14242        222 YMGKLIEVGPTEQIFTRP  239 (253)
T ss_pred             ECCEEEEeCCHHHHHcCC
Confidence            999999999988876543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-46  Score=357.83  Aligned_cols=218  Identities=23%  Similarity=0.359  Sum_probs=178.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||++ ||+|+|+         ++ .+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... 
T Consensus         1 ~l~~-~l~k~~~---------~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~-   67 (352)
T PRK11144          1 MLEL-NFKQQLG---------DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEK-   67 (352)
T ss_pred             CeEE-EEEEEeC---------CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc-
Confidence            4788 9999994         23 23 8999999999999999999999999999999999999999999986532100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICM  186 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAr  186 (348)
                          ..  .....++.++|++++..++..++..+.+ ++......+++.++++.+++.  .++++.+|||||||||+|||
T Consensus        68 ----~~--~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalar  141 (352)
T PRK11144         68 ----GI--CLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGR  141 (352)
T ss_pred             ----cc--ccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence                00  0011234566766665555555555443 333222345677889999986  47789999999999999999


Q ss_pred             HHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhhh
Q 018938          187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       187 aL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  266 (348)
                      ||+.+|++|||||||++||+.++..+++.|+++.++.|.|||+||||++++..+||++++|++|+++..|+++++...+.
T Consensus       142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~  221 (352)
T PRK11144        142 ALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA  221 (352)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence            99999999999999999999999999999999987668999999999999999999999999999999999999987654

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-46  Score=345.10  Aligned_cols=219  Identities=23%  Similarity=0.325  Sum_probs=173.5

Q ss_pred             CCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccc
Q 018938           26 NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH  105 (348)
Q Consensus        26 ~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~  105 (348)
                      +..++|+++|++++|++       ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus         3 ~~~~~l~i~~l~~~~~~-------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~   75 (269)
T PRK13648          3 DKNSIIVFKNVSFQYQS-------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITD   75 (269)
T ss_pred             CCCceEEEEEEEEEcCC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence            34568999999999953       12469999999999999999999999999999999999999999999999976421


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCcc-ccccch-HHHHHhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCC
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVS-AEKMIFGV--AGID----PQRRAELIKVLDID--LSWRMHKVS  175 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LS  175 (348)
                      ..           ...+++.++|+++... .....+ .++..+..  ....    .+++.++++.+++.  .++++.+||
T Consensus        76 ~~-----------~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS  144 (269)
T PRK13648         76 DN-----------FEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALS  144 (269)
T ss_pred             CC-----------HHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCC
Confidence            10           0123344555544431 122222 23332221  1112    13456778888875  367889999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||+++++.. ||++++|++|++++.
T Consensus       145 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~  223 (269)
T PRK13648        145 GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKE  223 (269)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999876568999999999999985 999999999999999


Q ss_pred             cChhHHHH
Q 018938          256 MPMDKVKE  263 (348)
Q Consensus       256 g~~~~~~~  263 (348)
                      |+++++..
T Consensus       224 g~~~~~~~  231 (269)
T PRK13648        224 GTPTEIFD  231 (269)
T ss_pred             cCHHHHhc
Confidence            99888754

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.5e-46  Score=339.96  Aligned_cols=214  Identities=22%  Similarity=0.279  Sum_probs=171.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-----CceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-----PEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-----~G~i~i~G~~~~  104 (348)
                      +|+++||+++|+         +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.++|.++.
T Consensus         1 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~   71 (247)
T TIGR00972         1 AIEIENLNLFYG---------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY   71 (247)
T ss_pred             CEEEEEEEEEEC---------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcc
Confidence            478999999995         357999999999999999999999999999999999999988     999999998643


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCC-CC----HHHHHHHHHHcCCC------cCcc
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAG-ID----PQRRAELIKVLDID------LSWR  170 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~-~~----~~~~~~~l~~l~l~------~~~~  170 (348)
                      ....         .....++.++|+++....+. .+..+ +.+.  ..+ ..    .+++.++++.+++.      .+++
T Consensus        72 ~~~~---------~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  141 (247)
T TIGR00972        72 DKKI---------DVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDS  141 (247)
T ss_pred             cccc---------chHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCC
Confidence            2100         00122345666655543333 34333 2221  111 11    13456778888885      2567


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++  +.|||++|||++++..+||++++|++|
T Consensus       142 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G  219 (247)
T TIGR00972       142 ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDG  219 (247)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECC
Confidence            899999999999999999999999999999999999999999999999864  489999999999999999999999999


Q ss_pred             EEeeecChhHHHHh
Q 018938          251 KLQLAMPMDKVKEA  264 (348)
Q Consensus       251 ~i~~~g~~~~~~~~  264 (348)
                      +++..++++++...
T Consensus       220 ~i~~~~~~~~~~~~  233 (247)
T TIGR00972       220 ELVEYGPTEQIFTN  233 (247)
T ss_pred             EEEEeCCHHHHHhC
Confidence            99999998887654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-45  Score=341.91  Aligned_cols=223  Identities=17%  Similarity=0.211  Sum_probs=175.4

Q ss_pred             hhcCCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceE
Q 018938           22 AVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMV   96 (348)
Q Consensus        22 ~~m~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i   96 (348)
                      ..|.....+|+++|++++|+         +.++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|
T Consensus         5 ~~~~~~~~~l~~~~l~~~~~---------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i   75 (260)
T PRK10744          5 SMVATAPSKIQVRNLNFYYG---------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI   75 (260)
T ss_pred             hHhcCCCceEEEEEEEEEeC---------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence            33445567899999999994         3579999999999999999999999999999999999986     478999


Q ss_pred             EEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc---CCCCH----HHHHHHHHHcCCC--
Q 018938           97 KVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV---AGIDP----QRRAELIKVLDID--  166 (348)
Q Consensus        97 ~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~----~~~~~~l~~l~l~--  166 (348)
                      .++|.++.... .        ....+++.++|++++..++. .+..+. .+..   ...+.    +++.++++.+++.  
T Consensus        76 ~~~g~~~~~~~-~--------~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  145 (260)
T PRK10744         76 LLDGENILTPK-Q--------DIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE  145 (260)
T ss_pred             EECCEEccccc-c--------chHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh
Confidence            99997652110 0        00123345666655433333 333332 2211   11221    3456778888863  


Q ss_pred             ----cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938          167 ----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS  242 (348)
Q Consensus       167 ----~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d  242 (348)
                          .++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++||+++++..+||
T Consensus       146 ~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d  223 (260)
T PRK10744        146 VKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSD  223 (260)
T ss_pred             hHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCC
Confidence                356789999999999999999999999999999999999999999999999985 3 6899999999999999999


Q ss_pred             EEEEEcCCEEeeecChhHHHHhh
Q 018938          243 HIVYVAHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       243 ~v~~l~~G~i~~~g~~~~~~~~~  265 (348)
                      ++++|++|++++.++++++....
T Consensus       224 ~i~~l~~G~i~~~g~~~~~~~~~  246 (260)
T PRK10744        224 YTAFMYLGELIEFGNTDTIFTKP  246 (260)
T ss_pred             EEEEEECCEEEEeCCHHHHHhCC
Confidence            99999999999999998886543

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-46  Score=343.69  Aligned_cols=205  Identities=24%  Similarity=0.390  Sum_probs=165.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++|++++|+         ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...   
T Consensus         1 ml~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---   68 (255)
T PRK11248          1 MLQISHLYADYG---------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP---   68 (255)
T ss_pred             CEEEEEEEEEeC---------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---
Confidence            488999999994         35799999999999999999999999999999999999999999999999764210   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                        ..           .++|+++....+...+..+.+ +..  .+..    ..++.++++.+++.  .++++.+|||||||
T Consensus        69 --~~-----------~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~q  135 (255)
T PRK11248         69 --GA-----------ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQ  135 (255)
T ss_pred             --CC-----------cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHH
Confidence              01           123333333333333333322 211  1222    23456788888885  36788999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc--CCEEeeecCh
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA--HGKLQLAMPM  258 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~--~G~i~~~g~~  258 (348)
                      ||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++..+||++++|+  +|+++..++.
T Consensus       136 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            99999999999999999999999999999999999999866568999999999999999999999998  5999988754


Q ss_pred             h
Q 018938          259 D  259 (348)
Q Consensus       259 ~  259 (348)
                      +
T Consensus       216 ~  216 (255)
T PRK11248        216 N  216 (255)
T ss_pred             C
Confidence            3

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.3e-47  Score=327.81  Aligned_cols=218  Identities=23%  Similarity=0.302  Sum_probs=186.0

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|.++||.|+|+         +++++++|||+|++||++||+|||||||||.+.+++|+.+|++|.|.++|.++...+-
T Consensus         3 ~~L~a~~l~K~y~---------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm   73 (243)
T COG1137           3 STLVAENLAKSYK---------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPM   73 (243)
T ss_pred             cEEEehhhhHhhC---------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCCh
Confidence            4699999999994         5789999999999999999999999999999999999999999999999987643221


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc---CCCC------HHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV---AGID------PQRRAELIKVLDID--LSWRMHKVSDG  177 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~l~~l~l~--~~~~~~~LSgG  177 (348)
                                ....+..++|.+|+...+..+++++++...   ...+      ..+.+++++.|.+.  .+.+..+||||
T Consensus        74 ----------~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGG  143 (243)
T COG1137          74 ----------HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGG  143 (243)
T ss_pred             ----------HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccc
Confidence                      111234578888888888888887755321   1111      12345788888886  36678899999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      ||+|+.|||||+.+|+++||||||+|+||.+..++.++++.+. +.|..|+++-|+..+...+|||.+++++|++.+.|+
T Consensus       144 ERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~  222 (243)
T COG1137         144 ERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGS  222 (243)
T ss_pred             hHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceEEEccccHHHHHhhhheEEEEecCeEEecCC
Confidence            9999999999999999999999999999999999999999986 569999999999999999999999999999999999


Q ss_pred             hhHHHHhhh
Q 018938          258 MDKVKEASK  266 (348)
Q Consensus       258 ~~~~~~~~~  266 (348)
                      ++++.+++.
T Consensus       223 p~ei~~n~~  231 (243)
T COG1137         223 PEEIVNNED  231 (243)
T ss_pred             HHHHhcChh
Confidence            999987654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-46  Score=348.07  Aligned_cols=222  Identities=20%  Similarity=0.319  Sum_probs=172.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|++..    ...+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......
T Consensus         2 ~i~~~~l~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~   77 (287)
T PRK13641          2 SIKFENVDYIYSPGT----PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGN   77 (287)
T ss_pred             EEEEEEEEEEcCCCC----CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence            589999999995200    0014699999999999999999999999999999999999999999999999865321000


Q ss_pred             cccCcccccchhhhhhhhhcCCCcc-ccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID---LSWRMHKVSDGQ  178 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~---~~~~~~~LSgGq  178 (348)
                         .    .....+..++|++++.. .....++.+.+ +..  ....    ..++.++++.+++.   .++++.+|||||
T Consensus        78 ---~----~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq  150 (287)
T PRK13641         78 ---K----NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQ  150 (287)
T ss_pred             ---c----hHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHH
Confidence               0    00112334555544421 11123443332 211  1222    23456788889985   367899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|+++..|++
T Consensus       151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~  229 (287)
T PRK13641        151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP  229 (287)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999864 589999999999999999999999999999999998


Q ss_pred             hHHHH
Q 018938          259 DKVKE  263 (348)
Q Consensus       259 ~~~~~  263 (348)
                      +++..
T Consensus       230 ~~~~~  234 (287)
T PRK13641        230 KEIFS  234 (287)
T ss_pred             HHHhc
Confidence            88764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=5e-46  Score=345.30  Aligned_cols=226  Identities=20%  Similarity=0.346  Sum_probs=175.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+........+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   81 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK   81 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence            68999999999521000000135799999999999999999999999999999999999999999999999764321100


Q ss_pred             cccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCC---cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDID---LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~---~~~~~~~LSg  176 (348)
                          .    ...+++.++|++++.  .+....+..+.+ +.   .....    .+++.++++.+++.   .++++.+|||
T Consensus        82 ----~----~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg  153 (265)
T TIGR02769        82 ----Q----RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSG  153 (265)
T ss_pred             ----H----HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCH
Confidence                0    001233456665543  122233443322 11   11111    23456788889884   3678899999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||++||+.++..++++|+++.++.|.|||++|||++++..+||++++|++|+++..|
T Consensus       154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  233 (265)
T TIGR02769       154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEEC  233 (265)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEEC
Confidence            99999999999999999999999999999999999999999987666899999999999999999999999999999999


Q ss_pred             ChhHHHH
Q 018938          257 PMDKVKE  263 (348)
Q Consensus       257 ~~~~~~~  263 (348)
                      +++++..
T Consensus       234 ~~~~~~~  240 (265)
T TIGR02769       234 DVAQLLS  240 (265)
T ss_pred             CHHHHcC
Confidence            9988865

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.2e-47  Score=324.87  Aligned_cols=218  Identities=24%  Similarity=0.379  Sum_probs=189.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+|+|+         .+.+++++|++|++|.+++|||||||||||||.+++.+++.++|+|+++|..+...   
T Consensus         1 MI~i~nv~K~y~---------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~---   68 (252)
T COG4604           1 MITIENVSKSYG---------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTST---   68 (252)
T ss_pred             CeeehhhhHhhC---------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccC---
Confidence            589999999994         58899999999999999999999999999999999999999999999999875322   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----C-C---CHHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----G-I---DPQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-~---~~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                              -.+++.+.++...|++.+...++++++. |+..    + .   ++..+.++++.+++.  .+++..+|||||
T Consensus        69 --------~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQ  140 (252)
T COG4604          69 --------PSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQ  140 (252)
T ss_pred             --------ChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccch
Confidence                    2234556666666777777778887764 3321    1 1   234567888888886  378899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      |||..||+.|+++.+.++||||.|+||..+...+++.|++++++.|+||++|-||++++..|+|+|+-|++|+++..|++
T Consensus       141 rQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~  220 (252)
T COG4604         141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSP  220 (252)
T ss_pred             hhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhhh
Q 018938          259 DKVKEASKL  267 (348)
Q Consensus       259 ~~~~~~~~~  267 (348)
                      +++.+...+
T Consensus       221 ~eii~~~~L  229 (252)
T COG4604         221 DEIIQPEIL  229 (252)
T ss_pred             HHhcCHHHH
Confidence            999875543

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=2.6e-46  Score=347.93  Aligned_cols=218  Identities=21%  Similarity=0.278  Sum_probs=173.5

Q ss_pred             EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938           32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS  111 (348)
Q Consensus        32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~  111 (348)
                      .++|+++.|+         .+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++......  
T Consensus        26 ~~~~~~~~~~---------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~--   94 (269)
T cd03294          26 SKEEILKKTG---------QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRK--   94 (269)
T ss_pred             hhhhhhhhcC---------CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChh--
Confidence            5779999994         46799999999999999999999999999999999999999999999999864321100  


Q ss_pred             cCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938          112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv  182 (348)
                        .+   ....+..++|+++....+...+..+.+ +.  ..+..    .+++.++++.+++.  .++.+.+|||||||||
T Consensus        95 --~~---~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv  169 (269)
T cd03294          95 --EL---RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRV  169 (269)
T ss_pred             --hh---hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHH
Confidence              00   000112455655554444344444432 21  11121    23456788888885  4678999999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  262 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  262 (348)
                      +|||||+.+|++|||||||+|||+.++..+.++|.+++++.|.|||++|||++++..+||++++|++|++++.|+++++.
T Consensus       170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  249 (269)
T cd03294         170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL  249 (269)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999999999999999987666899999999999999999999999999999999988886


Q ss_pred             Hhh
Q 018938          263 EAS  265 (348)
Q Consensus       263 ~~~  265 (348)
                      +..
T Consensus       250 ~~~  252 (269)
T cd03294         250 TNP  252 (269)
T ss_pred             hCc
Confidence            543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=7.2e-46  Score=336.34  Aligned_cols=214  Identities=25%  Similarity=0.341  Sum_probs=164.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|++..     ...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus         1 ~l~~~~v~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~   75 (228)
T cd03257           1 LLEVKNLSVSFPTGG-----GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR   75 (228)
T ss_pred             CeEEEeeeEeccCCC-----cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchh
Confidence            478999999995200     012799999999999999999999999999999999999999999999999865321100


Q ss_pred             cccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hc--cCC--CCHH---H-HHHHHHHcCCC---cCccCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FG--VAG--IDPQ---R-RAELIKVLDID---LSWRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~--~~~--~~~~---~-~~~~l~~l~l~---~~~~~~~LS  175 (348)
                              ....+++.++|.+++.  .+....+..+.+ +.  ...  ....   . ..++++.+++.   .++++.+||
T Consensus        76 --------~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  147 (228)
T cd03257          76 --------LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELS  147 (228)
T ss_pred             --------hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcC
Confidence                    0011234456665543  122234443332 11  111  1111   1 13677888874   367889999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++..+||++++|++|+++..
T Consensus       148 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  227 (228)
T cd03257         148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE  227 (228)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence            99999999999999999999999999999999999999999999765589999999999999999999999999999765


Q ss_pred             c
Q 018938          256 M  256 (348)
Q Consensus       256 g  256 (348)
                      |
T Consensus       228 g  228 (228)
T cd03257         228 G  228 (228)
T ss_pred             C
Confidence            3

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=7.2e-46  Score=343.65  Aligned_cols=218  Identities=21%  Similarity=0.307  Sum_probs=174.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC---ceEEEcCeeccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP---EMVKVLGRSAFH  105 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~---G~i~i~G~~~~~  105 (348)
                      ++|+++||+++|+         ++++|+++||+|++||+++|+||||||||||+++|+|+++|++   |+|.++|..+..
T Consensus         3 ~~l~~~nl~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~   73 (262)
T PRK09984          3 TIIRVEKLAKTFN---------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQR   73 (262)
T ss_pred             cEEEEeeEEEEeC---------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccc
Confidence            5899999999994         3679999999999999999999999999999999999998864   999999976422


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----------C-CC---HHHHHHHHHHcCCC--cC
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----------G-ID---PQRRAELIKVLDID--LS  168 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~-~~---~~~~~~~l~~l~l~--~~  168 (348)
                      ....  .    .....+++.++|+++...++...+..+.+ +...          . ..   ..++.++++.+++.  .+
T Consensus        74 ~~~~--~----~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  147 (262)
T PRK09984         74 EGRL--A----RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH  147 (262)
T ss_pred             cccc--c----hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh
Confidence            1000  0    00012234466665554444444444332 2110          0 01   23456788888885  46


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++..+||++++|+
T Consensus       148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~  227 (262)
T PRK09984        148 QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR  227 (262)
T ss_pred             CCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            78999999999999999999999999999999999999999999999999976668999999999999999999999999


Q ss_pred             CCEEeeecChhHH
Q 018938          249 HGKLQLAMPMDKV  261 (348)
Q Consensus       249 ~G~i~~~g~~~~~  261 (348)
                      +|++++.|+++++
T Consensus       228 ~g~i~~~g~~~~~  240 (262)
T PRK09984        228 QGHVFYDGSSQQF  240 (262)
T ss_pred             CCEEEEeCCHHHh
Confidence            9999999998876

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=9e-46  Score=342.25  Aligned_cols=221  Identities=23%  Similarity=0.296  Sum_probs=172.4

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee-----c
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS-----A  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~-----~  103 (348)
                      ++|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+     +
T Consensus         5 ~~l~~~~l~~~~~---------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i   75 (258)
T PRK11701          5 PLLSVRGLTKLYG---------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDL   75 (258)
T ss_pred             ceEEEeeeEEEcC---------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcccccccc
Confidence            4799999999994         3579999999999999999999999999999999999999999999999975     2


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCcc--ccccchHH-HHHhc---cCCCC----HHHHHHHHHHcCCC---cCcc
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAE-KMIFG---VAGID----PQRRAELIKVLDID---LSWR  170 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~---~~~~~----~~~~~~~l~~l~l~---~~~~  170 (348)
                      ......    .   .....+..++|++++..  +....+.. ++.+.   .....    ...+.++++.+++.   .++.
T Consensus        76 ~~~~~~----~---~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  148 (258)
T PRK11701         76 YALSEA----E---RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL  148 (258)
T ss_pred             ccCCHH----H---HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence            211000    0   00001223555544431  12222222 21111   11111    23456788888884   2577


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++.|.|||++|||++++..+||++++|++|
T Consensus       149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g  228 (258)
T PRK11701        149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQG  228 (258)
T ss_pred             CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence            89999999999999999999999999999999999999999999999987666899999999999999999999999999


Q ss_pred             EEeeecChhHHHHhh
Q 018938          251 KLQLAMPMDKVKEAS  265 (348)
Q Consensus       251 ~i~~~g~~~~~~~~~  265 (348)
                      ++++.|+++++...+
T Consensus       229 ~i~~~~~~~~~~~~~  243 (258)
T PRK11701        229 RVVESGLTDQVLDDP  243 (258)
T ss_pred             EEEEeCCHHHHhcCC
Confidence            999999998876543

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=4e-46  Score=334.26  Aligned_cols=200  Identities=22%  Similarity=0.353  Sum_probs=162.5

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|+++.|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..     
T Consensus         1 l~~~~l~~~~~---------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-----   66 (210)
T cd03269           1 LEVENVTKRFG---------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-----   66 (210)
T ss_pred             CEEEEEEEEEC---------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-----
Confidence            47899999994         3579999999999999999999999999999999999999999999999975321     


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                ..++.++|.+++...+...+..+.+ +.  ..+..    .+.+.++++.+++.  .++++.+||||||||
T Consensus        67 ----------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  136 (210)
T cd03269          67 ----------AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQK  136 (210)
T ss_pred             ----------HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHH
Confidence                      1123445554444333333443322 11  11111    23456788888885  366789999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++|||++++..+||++++|++|++++.
T Consensus       137 l~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~  209 (210)
T cd03269         137 VQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVLLLNKGRAVLY  209 (210)
T ss_pred             HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence            9999999999999999999999999999999999999865 489999999999999999999999999999764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-45  Score=339.72  Aligned_cols=213  Identities=22%  Similarity=0.244  Sum_probs=171.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~~  104 (348)
                      +|+++||+++|+         +.++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.
T Consensus         3 ~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~   73 (250)
T PRK14247          3 KIEIRDLKVSFG---------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF   73 (250)
T ss_pred             eEEEEeeEEEEC---------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECC
Confidence            699999999994         35799999999999999999999999999999999999874     6999999998653


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CC--CC----HHHHHHHHHHcCCC------cCc
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AG--ID----PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~--~~----~~~~~~~l~~l~l~------~~~  169 (348)
                      ...           ...++..++|+++....+...+..+.+ +..  ..  ..    .+.+.++++.+++.      .++
T Consensus        74 ~~~-----------~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  142 (250)
T PRK14247         74 KMD-----------VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDA  142 (250)
T ss_pred             cCC-----------HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcC
Confidence            211           012334566665554333344444332 211  11  11    13456778888873      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      .+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++|||++++..+||++++|++
T Consensus       143 ~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~  220 (250)
T PRK14247        143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYK  220 (250)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence            789999999999999999999999999999999999999999999999984 3 78999999999999999999999999


Q ss_pred             CEEeeecChhHHHHh
Q 018938          250 GKLQLAMPMDKVKEA  264 (348)
Q Consensus       250 G~i~~~g~~~~~~~~  264 (348)
                      |++++.|+++++.+.
T Consensus       221 G~i~~~g~~~~~~~~  235 (250)
T PRK14247        221 GQIVEWGPTREVFTN  235 (250)
T ss_pred             CeEEEECCHHHHHcC
Confidence            999999999887654

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=1e-45  Score=341.65  Aligned_cols=223  Identities=23%  Similarity=0.299  Sum_probs=176.4

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||++.|+         ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|..+.....
T Consensus         4 ~~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~   74 (257)
T PRK10619          4 NKLNVIDLHKRYG---------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRD   74 (257)
T ss_pred             ccEEEeeeEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccc
Confidence            4699999999994         3679999999999999999999999999999999999999999999999975421000


Q ss_pred             ccccCcccc----cchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCCc---CccCCC
Q 018938          109 LTSSGDLSY----LGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDIDL---SWRMHK  173 (348)
Q Consensus       109 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~~---~~~~~~  173 (348)
                        ..+.+..    ....+++.++|++++..++...+..+.+ +.   .....    ..++.++++.+++..   ++++.+
T Consensus        75 --~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~  152 (257)
T PRK10619         75 --KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVH  152 (257)
T ss_pred             --cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence              0000000    0012345677776655444444444332 21   11112    234567888898852   567899


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      ||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|+|||+||||++++..+|||+++|++|+++
T Consensus       153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~  231 (257)
T PRK10619        153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIE  231 (257)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999865 4999999999999999999999999999999


Q ss_pred             eecChhHHHH
Q 018938          254 LAMPMDKVKE  263 (348)
Q Consensus       254 ~~g~~~~~~~  263 (348)
                      +.|+++++..
T Consensus       232 ~~~~~~~~~~  241 (257)
T PRK10619        232 EEGAPEQLFG  241 (257)
T ss_pred             EeCCHHHhhh
Confidence            9999888754

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.6e-46  Score=344.96  Aligned_cols=215  Identities=22%  Similarity=0.312  Sum_probs=170.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+++|++        ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         1 ml~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-   71 (274)
T PRK13644          1 MIRLENVSYSYPD--------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK-   71 (274)
T ss_pred             CEEEEEEEEEcCC--------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcccc-
Confidence            4889999999952        3569999999999999999999999999999999999999999999999976422100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccc-cccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPI-QMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                               ...++..++|+++.... ....+..+.+ +..  .+.+    .+++.++++.+++.  .++++.+|||||+
T Consensus        72 ---------~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  142 (274)
T PRK13644         72 ---------LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQG  142 (274)
T ss_pred             ---------HHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHH
Confidence                     01223445555444321 2223333322 211  1122    23456778888885  3678999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|.|||++|||++++. .||++++|++|++++.|+++
T Consensus       143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~  220 (274)
T PRK13644        143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPE  220 (274)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999999864 5999999999999995 69999999999999999988


Q ss_pred             HHHHh
Q 018938          260 KVKEA  264 (348)
Q Consensus       260 ~~~~~  264 (348)
                      ++...
T Consensus       221 ~~~~~  225 (274)
T PRK13644        221 NVLSD  225 (274)
T ss_pred             HHhcC
Confidence            87643

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-45  Score=335.18  Aligned_cols=211  Identities=25%  Similarity=0.441  Sum_probs=170.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|++         ..  .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         1 ~l~~~~l~~~~~~---------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-   68 (232)
T PRK10771          1 MLKLTDITWLYHH---------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP-   68 (232)
T ss_pred             CeEEEEEEEEECC---------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh-
Confidence            4789999999942         22  38999999999999999999999999999999999999999999986432110 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-CC--CC---HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-AG--ID---PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~--~~---~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                  .+..++|+++....+...+..+.+ +.. ..  ..   ..++.++++.+++.  .++++.+|||||||
T Consensus        69 ------------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  136 (232)
T PRK10771         69 ------------SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQ  136 (232)
T ss_pred             ------------hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHH
Confidence                        012345554443333333443332 221 11  11   23466788888885  46789999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      |++|||||+.+|++|||||||+|||+.++..+.++|+++.++.|.|||++|||++++..+||++++|++|++++.|++++
T Consensus       137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~  216 (232)
T PRK10771        137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDE  216 (232)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999876668999999999999999999999999999999999888


Q ss_pred             HHHh
Q 018938          261 VKEA  264 (348)
Q Consensus       261 ~~~~  264 (348)
                      +...
T Consensus       217 ~~~~  220 (232)
T PRK10771        217 LLSG  220 (232)
T ss_pred             HHhC
Confidence            7653

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-45  Score=344.95  Aligned_cols=222  Identities=21%  Similarity=0.289  Sum_probs=174.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|++..+   .+.+++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|..+.....
T Consensus         3 ~~l~~~~l~~~~~~~~~---~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~   79 (280)
T PRK13633          3 EMIKCKNVSYKYESNEE---STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN   79 (280)
T ss_pred             ceEEEeeeEEEcCCCCC---CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc
Confidence            47999999999953100   012569999999999999999999999999999999999999999999999986532100


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccc-cccchHH-HHHhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPI-QMDVSAE-KMIFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                ....++.++|++++... ....+.. ++.+..  .+..    .+++.++++.+++.  .++++.+|||||
T Consensus        80 ----------~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~  149 (280)
T PRK13633         80 ----------LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQ  149 (280)
T ss_pred             ----------HHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHH
Confidence                      01123445665444311 1112233 332221  1222    23456788888885  367899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++.. ||++++|++|+++..|++
T Consensus       150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~  228 (280)
T PRK13633        150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTP  228 (280)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCH
Confidence            9999999999999999999999999999999999999999976669999999999999986 999999999999999999


Q ss_pred             hHHHHh
Q 018938          259 DKVKEA  264 (348)
Q Consensus       259 ~~~~~~  264 (348)
                      +++...
T Consensus       229 ~~~~~~  234 (280)
T PRK13633        229 KEIFKE  234 (280)
T ss_pred             HHHhcC
Confidence            887643

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=5.9e-46  Score=333.27  Aligned_cols=201  Identities=32%  Similarity=0.491  Sum_probs=159.7

Q ss_pred             EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938           32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS  111 (348)
Q Consensus        32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~  111 (348)
                      +++||+++|++       +.+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+....    
T Consensus         1 ~~~~l~~~~~~-------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----   69 (211)
T cd03225           1 ELKNLSFSYPD-------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS----   69 (211)
T ss_pred             CceeEEEecCC-------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC----
Confidence            36899999952       1257999999999999999999999999999999999999999999999997642110    


Q ss_pred             cCcccccchhhhhhhhhcCCCccc-cccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          112 SGDLSYLGGEWRREVAFAGFEVPI-QMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                             ...+++.++|.++.... ....+..+.+ +..  ....    ..++.++++.+++.  .++++.+||||||||
T Consensus        70 -------~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr  142 (211)
T cd03225          70 -------LKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQR  142 (211)
T ss_pred             -------HHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH
Confidence                   01233456666554321 2233433322 211  1122    23456788888885  367899999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      |+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++++..+||++++|++|+
T Consensus       143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            99999999999999999999999999999999999998764 8999999999999999999999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=8.1e-46  Score=332.49  Aligned_cols=201  Identities=24%  Similarity=0.387  Sum_probs=162.2

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|++         +.  .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  
T Consensus         1 i~~~~l~~~~~~---------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--   67 (211)
T cd03298           1 VRLDKIRFSYGE---------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--   67 (211)
T ss_pred             CEEEeEEEEeCC---------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--
Confidence            468999999952         22  39999999999999999999999999999999999999999999976432110  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC---CC---CHHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA---GI---DPQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                 .++.++|.++....+...+..+.+ +...   ..   ..+++.++++.+++.  .++++.+||||||||
T Consensus        68 -----------~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  136 (211)
T cd03298          68 -----------ADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQR  136 (211)
T ss_pred             -----------hHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHH
Confidence                       123355555544444444444433 2211   11   123466788888886  367889999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||++++|++|++++.
T Consensus       137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~  210 (211)
T cd03298         137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ  210 (211)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence            99999999999999999999999999999999999998766689999999999999999999999999999764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=1.2e-45  Score=335.29  Aligned_cols=213  Identities=21%  Similarity=0.266  Sum_probs=165.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCC-CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGS-TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~-~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      ++|+++||+++|++.      .. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+....
T Consensus         5 ~~l~~~~l~~~~~~~------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~   78 (228)
T PRK10584          5 NIVEVHHLKKSVGQG------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD   78 (228)
T ss_pred             ceEEEeeeEEEccCC------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCC
Confidence            589999999999530      01 35999999999999999999999999999999999999999999999997642211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                      ..    ..   ....+..++|+++...++...+..+.+ +.  .....    .+++.++++.+++.  .++++.+|||||
T Consensus        79 ~~----~~---~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge  151 (228)
T PRK10584         79 EE----AR---AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGE  151 (228)
T ss_pred             HH----HH---HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHH
Confidence            00    00   000112455555544443333443322 21  11111    23456788888885  367889999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||++|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++.. ||++++|++|++++.
T Consensus       152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~  227 (228)
T PRK10584        152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence            9999999999999999999999999999999999999999876668999999999999864 999999999998753

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-45  Score=344.42  Aligned_cols=216  Identities=25%  Similarity=0.353  Sum_probs=172.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|++        .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         1 ~l~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~-   71 (275)
T PRK13639          1 ILETRDLKYSYPD--------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKK-   71 (275)
T ss_pred             CEEEEEEEEEeCC--------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccc-
Confidence            4889999999952        3569999999999999999999999999999999999999999999999986521100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                              ....+++.++|++++.. .....++.+ +.++.  ....    .+++.++++.+++.  .++++.+|||||+
T Consensus        72 --------~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~  143 (275)
T PRK13639         72 --------SLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQK  143 (275)
T ss_pred             --------hHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHH
Confidence                    00112345666655431 111223333 32221  1112    13456788888885  4678999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      ||++|||||+.+|++|||||||+|||+.++..++++|.++.++ |.|||++|||++++..+||++++|++|++++.|+++
T Consensus       144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~  222 (275)
T PRK13639        144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPK  222 (275)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            9999999999999999999999999999999999999998754 899999999999999999999999999999999998


Q ss_pred             HHHH
Q 018938          260 KVKE  263 (348)
Q Consensus       260 ~~~~  263 (348)
                      ++..
T Consensus       223 ~~~~  226 (275)
T PRK13639        223 EVFS  226 (275)
T ss_pred             HHhc
Confidence            8764

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=4.3e-46  Score=334.74  Aligned_cols=197  Identities=23%  Similarity=0.415  Sum_probs=157.8

Q ss_pred             EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938           32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS  111 (348)
Q Consensus        32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~  111 (348)
                      +++||+++|+         +.++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.       
T Consensus         1 ~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-------   64 (213)
T cd03235           1 EVEDLTVSYG---------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-------   64 (213)
T ss_pred             CcccceeEEC---------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-------
Confidence            3689999994         357999999999999999999999999999999999999999999999986431       


Q ss_pred             cCcccccchhhhhhhhhcCCCcccc--ccchHHHHH-hccC-------CCC---HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938          112 SGDLSYLGGEWRREVAFAGFEVPIQ--MDVSAEKMI-FGVA-------GID---PQRRAELIKVLDID--LSWRMHKVSD  176 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~-------~~~---~~~~~~~l~~l~l~--~~~~~~~LSg  176 (348)
                               .+++.++|++++....  ...+..+.+ +...       ...   .+++.++++.+++.  .++++.+|||
T Consensus        65 ---------~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg  135 (213)
T cd03235          65 ---------KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSG  135 (213)
T ss_pred             ---------HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCH
Confidence                     1223455554443221  123343332 2111       011   23456788888885  4678899999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++| +++.
T Consensus       136 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~  212 (213)
T cd03235         136 GQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS  212 (213)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence            999999999999999999999999999999999999999999875 5899999999999999999999999886 4443

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-45  Score=339.61  Aligned_cols=216  Identities=25%  Similarity=0.281  Sum_probs=171.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeec
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSA  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~  103 (348)
                      ++|+++||+++|+         +.++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++
T Consensus         3 ~~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i   73 (253)
T PRK14267          3 FAIETVNLRVYYG---------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI   73 (253)
T ss_pred             ceEEEEeEEEEeC---------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEc
Confidence            4799999999994         35799999999999999999999999999999999999887     499999999865


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC--CH----HHHHHHHHHcCCC------cC
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI--DP----QRRAELIKVLDID------LS  168 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~--~~----~~~~~~l~~l~l~------~~  168 (348)
                      .... .        ....++..++|++++...+...+..+.+ +..  ...  ..    .++.++++.+++.      .+
T Consensus        74 ~~~~-~--------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  144 (253)
T PRK14267         74 YSPD-V--------DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLN  144 (253)
T ss_pred             cccc-c--------ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhc
Confidence            3100 0        0012334566665554444444443332 211  111  11    2355677877763      35


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+  ++|||++|||++++..+||++++|+
T Consensus       145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~  222 (253)
T PRK14267        145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLY  222 (253)
T ss_pred             cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEE
Confidence            67899999999999999999999999999999999999999999999999853  6899999999999999999999999


Q ss_pred             CCEEeeecChhHHHHh
Q 018938          249 HGKLQLAMPMDKVKEA  264 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~~  264 (348)
                      +|++++.|+++++.+.
T Consensus       223 ~G~i~~~~~~~~~~~~  238 (253)
T PRK14267        223 LGKLIEVGPTRKVFEN  238 (253)
T ss_pred             CCEEEEeCCHHHHHhC
Confidence            9999999999887653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-45  Score=339.51  Aligned_cols=217  Identities=18%  Similarity=0.233  Sum_probs=171.9

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~  102 (348)
                      .++|+++|++++|+         ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|..
T Consensus        10 ~~~l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~   80 (258)
T PRK14268         10 QPQIKVENLNLWYG---------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGED   80 (258)
T ss_pred             ceeEEEeeeEEEeC---------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEE
Confidence            35799999999994         35799999999999999999999999999999999999875     79999999976


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC------cCc
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID------LSW  169 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~------~~~  169 (348)
                      +.....         ....+++.++|+++...++. .+..+ +.+..  .+...    .++.++++.+++.      .++
T Consensus        81 i~~~~~---------~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  150 (258)
T PRK14268         81 IYEPDV---------DVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKS  150 (258)
T ss_pred             cccccc---------hHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcC
Confidence            421100         00112344666655433333 34333 22211  12222    2355678888762      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ++.+|||||+|||+|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++|||++++..+||++++|++
T Consensus       151 ~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~  228 (258)
T PRK14268        151 PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLM  228 (258)
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEEC
Confidence            789999999999999999999999999999999999999999999999985 3 79999999999999999999999999


Q ss_pred             CEEeeecChhHHHHhh
Q 018938          250 GKLQLAMPMDKVKEAS  265 (348)
Q Consensus       250 G~i~~~g~~~~~~~~~  265 (348)
                      |++++.++++++.+.+
T Consensus       229 G~i~~~~~~~~~~~~~  244 (258)
T PRK14268        229 GELIEFGQTRQIFHNP  244 (258)
T ss_pred             CEEEEeCCHHHHhcCC
Confidence            9999999998886543

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=2e-45  Score=332.55  Aligned_cols=208  Identities=22%  Similarity=0.298  Sum_probs=165.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++|++++|++        ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         1 ~l~~~~l~~~~~~--------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~-   71 (222)
T PRK10908          1 MIRFEHVSKAYLG--------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKN-   71 (222)
T ss_pred             CEEEEeeEEEecC--------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCCh-
Confidence            4789999999941        3579999999999999999999999999999999999999999999999975421100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                         ..    ...+++.++|+++....+...+..+.+ +.  ..+...    .++.++++.+++.  .++.+.+|||||||
T Consensus        72 ---~~----~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  144 (222)
T PRK10908         72 ---RE----VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ  144 (222)
T ss_pred             ---hH----HHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHH
Confidence               00    011234566665554433344443322 22  112222    2345778888875  36788999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||+|||||+.+|++|||||||++||+.++..++++|.++++ .+.|||++|||++++..+||++++|++|+++.
T Consensus       145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999999999999999999999999999999999999865 48999999999999999999999999999864

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-45  Score=337.35  Aligned_cols=218  Identities=23%  Similarity=0.345  Sum_probs=173.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++|+++.|+         ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......
T Consensus         2 ~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~   72 (242)
T PRK11124          2 SIQLNGINCFYG---------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP   72 (242)
T ss_pred             EEEEEeeEEEEC---------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccc
Confidence            589999999994         35799999999999999999999999999999999999999999999999864211000


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHh-c---cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-G---VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                      .   .  .....+++.++|+++....+...+..+.+. .   ..+..    ...+.++++.+++.  .++.+.+||||||
T Consensus        73 ~---~--~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~  147 (242)
T PRK11124         73 S---D--KAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQ  147 (242)
T ss_pred             c---h--hhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence            0   0  000123345666655544444444444331 1   11111    23456678888885  3677899999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      ||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|++++.++++
T Consensus       148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~  226 (242)
T PRK11124        148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS  226 (242)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999864 5899999999999999999999999999999999887


Q ss_pred             HHH
Q 018938          260 KVK  262 (348)
Q Consensus       260 ~~~  262 (348)
                      ++.
T Consensus       227 ~~~  229 (242)
T PRK11124        227 CFT  229 (242)
T ss_pred             Hhc
Confidence            754

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=1.8e-45  Score=332.47  Aligned_cols=210  Identities=20%  Similarity=0.308  Sum_probs=164.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|++..     +.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... 
T Consensus         1 ~l~~~~v~~~~~~~~-----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-   74 (221)
T TIGR02211         1 LLKCENLGKRYQEGK-----LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSS-   74 (221)
T ss_pred             CEEEEeeeEEccCCC-----cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCH-
Confidence            378999999995310     12469999999999999999999999999999999999999999999999976422110 


Q ss_pred             cccCcccccchhhh-hhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWR-REVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                         ...    ..++ +.++|+++...++...+..+.+ +.  .....    .+++.++++.+++.  .++.+.+||||||
T Consensus        75 ---~~~----~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  147 (221)
T TIGR02211        75 ---NER----AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGER  147 (221)
T ss_pred             ---hHH----HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence               000    0112 3466665554444344444332 21  11111    23456788888886  3678899999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++++.. ||++++|++|+++
T Consensus       148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            999999999999999999999999999999999999999876668999999999999965 8999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-45  Score=341.13  Aligned_cols=217  Identities=22%  Similarity=0.353  Sum_probs=173.1

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++|++++|++       +++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus         5 ~~~l~~~nl~~~~~~-------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~   77 (271)
T PRK13632          5 SVMIKVENVSFSYPN-------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN   77 (271)
T ss_pred             ceEEEEEeEEEEcCC-------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC
Confidence            468999999999952       2457999999999999999999999999999999999999999999999998642110


Q ss_pred             cccccCcccccchhhhhhhhhcCCCcc-ccccchHHHH-Hhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKM-IFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDG  177 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgG  177 (348)
                      .           ..+++.++|++++.. .+...+..+. .+..  .....    ..+.++++.+++.  .++++.+||||
T Consensus        78 ~-----------~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G  146 (271)
T PRK13632         78 L-----------KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGG  146 (271)
T ss_pred             H-----------HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHH
Confidence            0           122344556544431 2223343332 2211  11222    2356778888886  47789999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      ||||++|||||+.+|++|||||||+|||+.++..++++|++++++.+.|||++||+++++. +||++++|++|+++..|+
T Consensus       147 ~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~  225 (271)
T PRK13632        147 QKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGK  225 (271)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecC
Confidence            9999999999999999999999999999999999999999987654589999999999996 799999999999999998


Q ss_pred             hhHHHH
Q 018938          258 MDKVKE  263 (348)
Q Consensus       258 ~~~~~~  263 (348)
                      ++++..
T Consensus       226 ~~~~~~  231 (271)
T PRK13632        226 PKEILN  231 (271)
T ss_pred             HHHHhc
Confidence            887654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=7.6e-46  Score=333.18  Aligned_cols=205  Identities=23%  Similarity=0.378  Sum_probs=162.9

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|++        .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... 
T Consensus         1 l~~~~l~~~~~~--------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~-   71 (214)
T cd03292           1 IEFINVTKTYPN--------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR-   71 (214)
T ss_pred             CEEEEEEEEeCC--------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHH-
Confidence            468999999952        25799999999999999999999999999999999999999999999999764221000 


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                         .    ...+++.++|+++....+...+..+.+ +..  ....    .+++.++++.+++.  .++++.+||||||||
T Consensus        72 ---~----~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  144 (214)
T cd03292          72 ---A----IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQR  144 (214)
T ss_pred             ---H----HHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHH
Confidence               0    012334566666554444444444322 211  1112    23456788888885  366789999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      ++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||++|||++++..+||++++|++|++
T Consensus       145 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999999999999999999999999999999864 489999999999999999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-45  Score=342.19  Aligned_cols=217  Identities=24%  Similarity=0.359  Sum_probs=173.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC---ceEEEcCeeccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP---EMVKVLGRSAFH  105 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~---G~i~i~G~~~~~  105 (348)
                      .+|+++|++++|++       ..+++|+++||+|++||+++|+||||||||||+++|+|+++|++   |+|.++|.++..
T Consensus         4 ~~l~i~~l~~~~~~-------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~   76 (282)
T PRK13640          4 NIVEFKHVSFTYPD-------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA   76 (282)
T ss_pred             ceEEEEEEEEEcCC-------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCc
Confidence            47999999999952       23469999999999999999999999999999999999999987   899999986521


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCcc-ccccchHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCC
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVS  175 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LS  175 (348)
                      ...           ...+..++|+++... .....++.+.+ +..  .+...    +++.++++.+++.  .++++.+||
T Consensus        77 ~~~-----------~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS  145 (282)
T PRK13640         77 KTV-----------WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLS  145 (282)
T ss_pred             CCH-----------HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCC
Confidence            100           112344566544431 22233444332 221  12222    3456788888886  467899999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||+||++|||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++||+++++. +||++++|++|++++.
T Consensus       146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~  224 (282)
T PRK13640        146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQ  224 (282)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999987666899999999999995 7999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+++++...
T Consensus       225 g~~~~~~~~  233 (282)
T PRK13640        225 GSPVEIFSK  233 (282)
T ss_pred             CCHHHHhcC
Confidence            999887653

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-45  Score=339.73  Aligned_cols=218  Identities=18%  Similarity=0.219  Sum_probs=172.0

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCe
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGR  101 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~  101 (348)
                      ..++|+++||+++|+         ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.
T Consensus        16 ~~~~l~~~nl~~~~~---------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~   86 (267)
T PRK14235         16 TEIKMRARDVSVFYG---------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGE   86 (267)
T ss_pred             CCceEEEEeEEEEEC---------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence            346899999999994         35799999999999999999999999999999999999874     8999999997


Q ss_pred             eccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CCC--C----HHHHHHHHHHcCCC------c
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AGI--D----PQRRAELIKVLDID------L  167 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~----~~~~~~~l~~l~l~------~  167 (348)
                      ++.... .    .    ...+++.++|+++....+.....+++.+..  .+.  .    .+++.++++.+++.      .
T Consensus        87 ~i~~~~-~----~----~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  157 (267)
T PRK14235         87 DIYDPR-L----D----VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL  157 (267)
T ss_pred             ECcccc-c----c----hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh
Confidence            653110 0    0    012334556665543333322223332221  111  1    13356778888873      2


Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||++|||++++..+||++++|
T Consensus       158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l  235 (267)
T PRK14235        158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFF  235 (267)
T ss_pred             hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEE
Confidence            457899999999999999999999999999999999999999999999999853  689999999999999999999999


Q ss_pred             cCCEEeeecChhHHHHh
Q 018938          248 AHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       248 ~~G~i~~~g~~~~~~~~  264 (348)
                      ++|+++..|+++++...
T Consensus       236 ~~G~i~~~g~~~~~~~~  252 (267)
T PRK14235        236 HLGNLVEVGDTEKMFTN  252 (267)
T ss_pred             ECCEEEEeCCHHHHHhC
Confidence            99999999998887654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.3e-45  Score=331.06  Aligned_cols=202  Identities=24%  Similarity=0.422  Sum_probs=163.8

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         +.++|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.++....   
T Consensus         1 i~~~~~~~~~~---------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---   67 (211)
T cd03264           1 LQLENLTKRYG---------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP---   67 (211)
T ss_pred             CEEEEEEEEEC---------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch---
Confidence            47899999994         357999999999999 99999999999999999999999999999999997542110   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                               ..+++.++|.+++...+...+..+.+ +.  ..+..    .+.+.++++.+++.  .+.++.+||||||||
T Consensus        68 ---------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  138 (211)
T cd03264          68 ---------QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRR  138 (211)
T ss_pred             ---------HHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHH
Confidence                     12344566665554444444444332 21  11111    23456788888885  367889999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |+|||||+.+|++|||||||+|||+.++..+.++|+++++  +.|||++|||++++..+||++++|++|++++.|
T Consensus       139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999999999864  589999999999999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=9.5e-46  Score=363.67  Aligned_cols=233  Identities=21%  Similarity=0.303  Sum_probs=184.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC----CceEEEcCeecc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE----PEMVKVLGRSAF  104 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~----~G~i~i~G~~~~  104 (348)
                      ++|+++||++.|....     +...+++||||+|.+||++||+|+|||||||+.++|.|++++.    +|+|.++|.++.
T Consensus         4 ~lL~V~nL~v~~~~~~-----~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~   78 (539)
T COG1123           4 PLLEVENLTVEFATDG-----GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLL   78 (539)
T ss_pred             ceEEEeceEEEEecCC-----cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchh
Confidence            4899999999996421     2347999999999999999999999999999999999999877    699999997543


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH----hccCCC----CHHHHHHHHHHcCCCc----Ccc
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI----FGVAGI----DPQRRAELIKVLDIDL----SWR  170 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~----~~~~~~~~l~~l~l~~----~~~  170 (348)
                      .-...    ..   .....+.+++.+|+..  +++-++..+.+    ......    ..+++.++++.+++..    +++
T Consensus        79 ~l~~~----~~---r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~y  151 (539)
T COG1123          79 GLSER----EM---RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRY  151 (539)
T ss_pred             cCCHH----HH---HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccC
Confidence            22110    00   0112245666655432  23323333221    111111    1244567888888852    358


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      |++|||||||||.||+||+++|++||+||||++||+..+.+|+++|++++++.|+++|+||||+..+.++||||++|++|
T Consensus       152 PheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G  231 (539)
T COG1123         152 PHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG  231 (539)
T ss_pred             CcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecChhHHHHhhhhhhHHHH
Q 018938          251 KLQLAMPMDKVKEASKLSLMRTV  273 (348)
Q Consensus       251 ~i~~~g~~~~~~~~~~~~~~~~~  273 (348)
                      ++++.|++++++.++.+.+.+.+
T Consensus       232 ~iVE~G~~~~i~~~p~hpYT~~L  254 (539)
T COG1123         232 EIVETGPTEEILSNPQHPYTRGL  254 (539)
T ss_pred             EEEEecCHHHHHhccCCcccHHH
Confidence            99999999999998888766544

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=2.8e-45  Score=337.98  Aligned_cols=221  Identities=23%  Similarity=0.320  Sum_probs=170.9

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee-----c
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS-----A  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~-----~  103 (348)
                      ++|+++||+++|+         +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+     +
T Consensus         2 ~~l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~   72 (253)
T TIGR02323         2 PLLQVSGLSKSYG---------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELEL   72 (253)
T ss_pred             ceEEEeeeEEEeC---------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccccccccc
Confidence            4799999999994         3569999999999999999999999999999999999999999999999864     2


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCcc--ccccchHH-HHH-----hccCCC--CHHHHHHHHHHcCCC---cCcc
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAE-KMI-----FGVAGI--DPQRRAELIKVLDID---LSWR  170 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-----~~~~~~--~~~~~~~~l~~l~l~---~~~~  170 (348)
                      .....    ..   .....++.++|.++...  .....+.. ++.     +.....  ....+.++++.+++.   .++.
T Consensus        73 ~~~~~----~~---~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~  145 (253)
T TIGR02323        73 YQLSE----AE---RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDL  145 (253)
T ss_pred             ccCCH----HH---HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence            11000    00   00001123455544321  11222222 111     111111  123456788888884   3567


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||+|||+++++..+||++++|++|
T Consensus       146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G  225 (253)
T TIGR02323       146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG  225 (253)
T ss_pred             chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence            89999999999999999999999999999999999999999999999987666899999999999999999999999999


Q ss_pred             EEeeecChhHHHHhh
Q 018938          251 KLQLAMPMDKVKEAS  265 (348)
Q Consensus       251 ~i~~~g~~~~~~~~~  265 (348)
                      +++..++++++....
T Consensus       226 ~i~~~~~~~~~~~~~  240 (253)
T TIGR02323       226 RVVESGLTDQVLDDP  240 (253)
T ss_pred             EEEEECCHHHHhcCC
Confidence            999999988876543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=1.1e-45  Score=331.98  Aligned_cols=203  Identities=23%  Similarity=0.356  Sum_probs=163.1

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|+         ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....   
T Consensus         1 l~~~~l~~~~~---------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---   68 (213)
T cd03262           1 IEIKNLHKSFG---------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK---   68 (213)
T ss_pred             CEEEEEEEEEC---------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccc---
Confidence            46899999994         357999999999999999999999999999999999999999999999997642100   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                            .....+++.++|+++....+...+..+.+ +.   ......    +++.++++.+++.  .++++.+|||||+|
T Consensus        69 ------~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  142 (213)
T cd03262          69 ------KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQ  142 (213)
T ss_pred             ------hhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHH
Confidence                  00012334566665554444434444332 21   112221    2456778888885  36788999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      |++|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|++
T Consensus       143 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999999999999875 589999999999999999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-45  Score=340.45  Aligned_cols=214  Identities=21%  Similarity=0.273  Sum_probs=171.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC--------CceEEEcCe
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE--------PEMVKVLGR  101 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~--------~G~i~i~G~  101 (348)
                      ||+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|+        +|+|.++|.
T Consensus         1 ml~~~nl~~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~   71 (272)
T PRK13547          1 MLTADHLHVARR---------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE   71 (272)
T ss_pred             CeEEEEEEEEEC---------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCE
Confidence            489999999994         357999999999999999999999999999999999999988        899999997


Q ss_pred             eccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-C-----C-CC---HHHHHHHHHHcCCC--cC
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-A-----G-ID---PQRRAELIKVLDID--LS  168 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-----~-~~---~~~~~~~l~~l~l~--~~  168 (348)
                      ++....           ...+++.++|+++........+..+.+ +.. .     . ..   .+.+.++++.+++.  .+
T Consensus        72 ~~~~~~-----------~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  140 (272)
T PRK13547         72 PLAAID-----------APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG  140 (272)
T ss_pred             EcccCC-----------HHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc
Confidence            642110           011223345554443322233444332 211 0     0 11   23456788888886  46


Q ss_pred             ccCCCCCHHHHHHHHHHHHHc---------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938          169 WRMHKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN  239 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~---------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~  239 (348)
                      +++.+|||||+|||+|||||+         .+|++|||||||+|||+.++..+.++|+++.++.|.|||+||||++++..
T Consensus       141 ~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~  220 (272)
T PRK13547        141 RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAAR  220 (272)
T ss_pred             CCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence            788999999999999999999         59999999999999999999999999999876668999999999999999


Q ss_pred             hCCEEEEEcCCEEeeecChhHHHH
Q 018938          240 WPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       240 ~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      +||++++|++|++++.++++++..
T Consensus       221 ~~d~i~~l~~G~i~~~g~~~~~~~  244 (272)
T PRK13547        221 HADRIAMLADGAIVAHGAPADVLT  244 (272)
T ss_pred             hCCEEEEEECCeEEEecCHHHHcC
Confidence            999999999999999998887754

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=6.7e-45  Score=335.75  Aligned_cols=213  Identities=21%  Similarity=0.264  Sum_probs=170.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC----CCceEEEcCeeccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV----EPEMVKVLGRSAFH  105 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~----~~G~i~i~G~~~~~  105 (348)
                      +|+++||+++|+          +++|+++||+|++||+++|+||||||||||+++|+|+++|    ++|+|.++|.++..
T Consensus         4 ~l~~~~l~~~~~----------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~   73 (254)
T PRK10418          4 QIELRNIALQAA----------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP   73 (254)
T ss_pred             EEEEeCeEEEec----------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc
Confidence            699999999992          4699999999999999999999999999999999999998    99999999986521


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH-h--ccCC--CCHHHHHHHHHHcCCCc-----CccCCC
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI-F--GVAG--IDPQRRAELIKVLDIDL-----SWRMHK  173 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~--~~~~--~~~~~~~~~l~~l~l~~-----~~~~~~  173 (348)
                      . .            ..++.++|++++..  +....+..+.. .  ...+  ...+++.++++.+++..     ++.+.+
T Consensus        74 ~-~------------~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~  140 (254)
T PRK10418         74 C-A------------LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFE  140 (254)
T ss_pred             c-c------------cccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcc
Confidence            0 0            01122444433321  11112222211 1  0111  12345677888888853     567899


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||+|||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||++||+++++..+||++++|++|+++
T Consensus       141 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~  220 (254)
T PRK10418        141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV  220 (254)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999987666899999999999999999999999999999


Q ss_pred             eecChhHHHHhh
Q 018938          254 LAMPMDKVKEAS  265 (348)
Q Consensus       254 ~~g~~~~~~~~~  265 (348)
                      ..++++++....
T Consensus       221 ~~~~~~~~~~~~  232 (254)
T PRK10418        221 EQGDVETLFNAP  232 (254)
T ss_pred             EecCHHHHhhCC
Confidence            999998886543

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-45  Score=335.64  Aligned_cols=212  Identities=19%  Similarity=0.251  Sum_probs=170.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc---CCCceEEEcCeecccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFHD  106 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~---~~~G~i~i~G~~~~~~  106 (348)
                      +++++|+++.|+         ++.+|+|+||+|++||+++|+||||||||||+++|+|++.   |++|+|.++|+++...
T Consensus         2 ~~~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~   72 (246)
T PRK14269          2 IAKTTNLNLFYG---------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ   72 (246)
T ss_pred             ceeeeeeEEEEC---------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC
Confidence            589999999994         3579999999999999999999999999999999999974   6899999999865321


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCC----C--HHHHHHHHHHcCCC------cCccC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGI----D--PQRRAELIKVLDID------LSWRM  171 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~----~--~~~~~~~l~~l~l~------~~~~~  171 (348)
                      .           ...+++.++|.+++..++. .+..+.+ +.  ....    .  ..++.++++.+++.      .++.+
T Consensus        73 ~-----------~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  140 (246)
T PRK14269         73 D-----------VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNA  140 (246)
T ss_pred             C-----------HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCc
Confidence            0           0123345666655544333 2343332 21  1111    1  12356778888883      35678


Q ss_pred             CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++. + +.|||++||+++++..+||++++|++|+
T Consensus       141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~  218 (246)
T PRK14269        141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGE  218 (246)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCE
Confidence            9999999999999999999999999999999999999999999999985 3 8899999999999999999999999999


Q ss_pred             EeeecChhHHHHh
Q 018938          252 LQLAMPMDKVKEA  264 (348)
Q Consensus       252 i~~~g~~~~~~~~  264 (348)
                      +++.|+.+++...
T Consensus       219 i~~~g~~~~~~~~  231 (246)
T PRK14269        219 LIEFGESKEFFEN  231 (246)
T ss_pred             EEEECCHHHHHhC
Confidence            9999999887654

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-45  Score=343.40  Aligned_cols=225  Identities=20%  Similarity=0.286  Sum_probs=172.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+++|++..    ....++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus         5 ~~l~i~nl~~~~~~~~----~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~   80 (289)
T PRK13645          5 KDIILDNVSYTYAKKT----PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK   80 (289)
T ss_pred             ceEEEEEEEEEeCCCC----ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc
Confidence            3589999999995310    001359999999999999999999999999999999999999999999999976421100


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccc-cccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC---cCccCCCCCHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPI-QMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDG  177 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~---~~~~~~~LSgG  177 (348)
                           ... ....+++.++|+++.... ....+..+ +.+..  .....    +++.++++.+++.   .++++.+||||
T Consensus        81 -----~~~-~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~G  154 (289)
T PRK13645         81 -----KIK-EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGG  154 (289)
T ss_pred             -----ccc-cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHH
Confidence                 000 001123345555444211 11123332 22211  11221    2345678888883   36788999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|+|||++|||++++..+||++++|++|++++.|+
T Consensus       155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~  234 (289)
T PRK13645        155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS  234 (289)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999876668999999999999999999999999999999999


Q ss_pred             hhHHHH
Q 018938          258 MDKVKE  263 (348)
Q Consensus       258 ~~~~~~  263 (348)
                      ++++..
T Consensus       235 ~~~~~~  240 (289)
T PRK13645        235 PFEIFS  240 (289)
T ss_pred             HHHHhc
Confidence            888754

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=4.3e-45  Score=336.34  Aligned_cols=203  Identities=19%  Similarity=0.329  Sum_probs=164.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..      
T Consensus         3 ~~l~~~~l~~~~~---------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~------   67 (251)
T PRK09544          3 SLVSLENVSVSFG---------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL------   67 (251)
T ss_pred             cEEEEeceEEEEC---------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCcc------
Confidence            4799999999994         3579999999999999999999999999999999999999999999887621      


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcccccc--chHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMD--VSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQI  184 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l  184 (348)
                           .+.++           ++.......  .+..++.........+++.++++.+++.  .++++.+|||||||||+|
T Consensus        68 -----~i~~v-----------~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l  131 (251)
T PRK09544         68 -----RIGYV-----------PQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLL  131 (251)
T ss_pred             -----CEEEe-----------ccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHH
Confidence                 12222           222111111  1222222111122345567788888885  367889999999999999


Q ss_pred             HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      ||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++|||++++..+||++++|++ +++..|+++++..
T Consensus       132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~  209 (251)
T PRK09544        132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL  209 (251)
T ss_pred             HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence            99999999999999999999999999999999998765589999999999999999999999965 7889999888754

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-45  Score=341.56  Aligned_cols=221  Identities=25%  Similarity=0.354  Sum_probs=171.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|++..    ...+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus         2 ~l~~~~l~~~~~~~~----~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~   77 (280)
T PRK13649          2 GINLQNVSYTYQAGT----PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKN   77 (280)
T ss_pred             eEEEEEEEEEcCCCC----ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccc
Confidence            489999999995310    0014699999999999999999999999999999999999999999999999764321000


Q ss_pred             cccCcccccchhhhhhhhhcCCCc--cccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC---cCccCCCCCHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID---LSWRMHKVSDG  177 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~---~~~~~~~LSgG  177 (348)
                             .....+++.++|+++..  .++. .+..+ +.+..  .....    ..+.++++.+++.   .++++.+||||
T Consensus        78 -------~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  149 (280)
T PRK13649         78 -------KDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGG  149 (280)
T ss_pred             -------cCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence                   00012334456665442  1222 23333 22211  12222    2345678888885   36788999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+|||||+.+|++|||||||++||+.++..+.++|+++++ .|.|||++|||++++..+||++++|++|++++.|+
T Consensus       150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~  228 (280)
T PRK13649        150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK  228 (280)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999865 48999999999999999999999999999999999


Q ss_pred             hhHHHH
Q 018938          258 MDKVKE  263 (348)
Q Consensus       258 ~~~~~~  263 (348)
                      ++++..
T Consensus       229 ~~~~~~  234 (280)
T PRK13649        229 PKDIFQ  234 (280)
T ss_pred             HHHHhc
Confidence            887754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=2.4e-45  Score=336.17  Aligned_cols=212  Identities=21%  Similarity=0.242  Sum_probs=165.1

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCCceEEEcCeecccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~G~i~i~G~~~~~~~~  108 (348)
                      |+++||+++|+         ++.+|+|+||+|++||+++|+||||||||||+|+|+|++  +|++|+|.++|.++.....
T Consensus         1 l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~   71 (243)
T TIGR01978         1 LKIKDLHVSVE---------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP   71 (243)
T ss_pred             CeEeeEEEEEC---------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH
Confidence            47899999994         357999999999999999999999999999999999995  6899999999976432110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc---cC------CCC----HHHHHHHHHHcCCC---cCccC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VA------GID----PQRRAELIKVLDID---LSWRM  171 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~------~~~----~~~~~~~l~~l~l~---~~~~~  171 (348)
                      .          ...+..++|+++....+...+..+++ +.   ..      ..+    .+++.++++.+++.   .++++
T Consensus        72 ~----------~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  141 (243)
T TIGR01978        72 D----------ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSV  141 (243)
T ss_pred             H----------HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhccccc
Confidence            0          00111244444443333333333322 10   00      011    13456788888885   25566


Q ss_pred             C-CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEEEEcC
Q 018938          172 H-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAH  249 (348)
Q Consensus       172 ~-~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~~l~~  249 (348)
                      . +|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||++|||++++..+ ||++++|++
T Consensus       142 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~  220 (243)
T TIGR01978       142 NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLD  220 (243)
T ss_pred             ccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeC
Confidence            6 5999999999999999999999999999999999999999999999864 589999999999999998 899999999


Q ss_pred             CEEeeecChhHHH
Q 018938          250 GKLQLAMPMDKVK  262 (348)
Q Consensus       250 G~i~~~g~~~~~~  262 (348)
                      |++++.|+++++.
T Consensus       221 G~i~~~g~~~~~~  233 (243)
T TIGR01978       221 GRIVKSGDVELAK  233 (243)
T ss_pred             CEEEEecCHHHhc
Confidence            9999999887554

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.6e-45  Score=355.91  Aligned_cols=212  Identities=22%  Similarity=0.313  Sum_probs=169.1

Q ss_pred             CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhh-hhhhh
Q 018938           50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWR-REVAF  128 (348)
Q Consensus        50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  128 (348)
                      |...+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|+.............+    ..++ +.++|
T Consensus        35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l----~~~r~~~i~~  110 (382)
T TIGR03415        35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATL----RRLRTHRVSM  110 (382)
T ss_pred             CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHH----HHHhcCCEEE
Confidence            457799999999999999999999999999999999999999999999999631000000000000    0111 35677


Q ss_pred             cCCCccccccchHHHH-Hhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeec
Q 018938          129 AGFEVPIQMDVSAEKM-IFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE  199 (348)
Q Consensus       129 ~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDE  199 (348)
                      +++...++...+..++ .++.  .+..    ..++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||
T Consensus       111 vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE  190 (382)
T TIGR03415       111 VFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE  190 (382)
T ss_pred             EECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            7666655555555443 3322  1222    23456788889986  367899999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhh
Q 018938          200 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       200 PtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  265 (348)
                      ||++||+.++..+.+.|.++.++.++|||+||||++++.++||||++|++|+++..|+++++...+
T Consensus       191 Pts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p  256 (382)
T TIGR03415       191 PFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP  256 (382)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence            999999999999999999997767999999999999999999999999999999999999987654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6e-45  Score=338.60  Aligned_cols=218  Identities=20%  Similarity=0.222  Sum_probs=170.7

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCe
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGR  101 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~  101 (348)
                      ..++|+++|++++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|++.     |++|+|.++|.
T Consensus        18 ~~~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~   88 (268)
T PRK14248         18 KEHILEVKDLSIYYG---------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGL   88 (268)
T ss_pred             CCceEEEEEEEEEeC---------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCE
Confidence            456899999999994         3679999999999999999999999999999999999864     68999999998


Q ss_pred             eccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCC-C----HHHHHHHHHHcCCC------c
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGI-D----PQRRAELIKVLDID------L  167 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~----~~~~~~~l~~l~l~------~  167 (348)
                      ++.....         ....+++.++|.++....+.. +.. ++.+..  ... .    .+.+.++++.+++.      .
T Consensus        89 ~i~~~~~---------~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  158 (268)
T PRK14248         89 NILDSNI---------NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRL  158 (268)
T ss_pred             Ecccccc---------cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHH
Confidence            6532100         001123445666554433332 333 322221  111 1    12345567777763      3


Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||++|||++++..+||++++|
T Consensus       159 ~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l  236 (268)
T PRK14248        159 HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFF  236 (268)
T ss_pred             hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEE
Confidence            567899999999999999999999999999999999999999999999999853  689999999999999999999999


Q ss_pred             cCCEEeeecChhHHHHhh
Q 018938          248 AHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       248 ~~G~i~~~g~~~~~~~~~  265 (348)
                      ++|++++.++++++....
T Consensus       237 ~~G~i~~~~~~~~~~~~~  254 (268)
T PRK14248        237 LNGDLVEYDQTEQIFTSP  254 (268)
T ss_pred             ECCEEEEeCCHHHHHhCC
Confidence            999999999998876543

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.6e-45  Score=337.87  Aligned_cols=212  Identities=23%  Similarity=0.353  Sum_probs=170.5

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|+++.|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  
T Consensus         2 l~~~~l~~~~~---------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~--   70 (256)
T TIGR03873         2 LRLSRVSWSAG---------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR--   70 (256)
T ss_pred             ceEEeEEEEEC---------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH--
Confidence            67999999994         3579999999999999999999999999999999999999999999999976422110  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc------CC--C--CHHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV------AG--I--DPQRRAELIKVLDID--LSWRMHKVSDG  177 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~--~--~~~~~~~~l~~l~l~--~~~~~~~LSgG  177 (348)
                               ...++.++|.++........+..+.+ +..      ..  .  ..+++.++++.+++.  .++++.+||||
T Consensus        71 ---------~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G  141 (256)
T TIGR03873        71 ---------RARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGG  141 (256)
T ss_pred             ---------HHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHH
Confidence                     11223455554443333333433322 211      00  0  122456778888875  36789999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |+||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|++++.|+
T Consensus       142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~  220 (256)
T TIGR03873       142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP  220 (256)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecC
Confidence            99999999999999999999999999999999999999999864 48999999999999999999999999999999998


Q ss_pred             hhHHHH
Q 018938          258 MDKVKE  263 (348)
Q Consensus       258 ~~~~~~  263 (348)
                      .+++..
T Consensus       221 ~~~~~~  226 (256)
T TIGR03873       221 PREVLT  226 (256)
T ss_pred             HHHhhC
Confidence            887654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=3.6e-45  Score=331.06  Aligned_cols=205  Identities=25%  Similarity=0.374  Sum_probs=167.2

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+...    
T Consensus         1 l~l~~v~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~----   67 (223)
T TIGR03740         1 LETKNLSKRFG---------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK----   67 (223)
T ss_pred             CEEEeEEEEEC---------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc----
Confidence            46899999994         35799999999999999999999999999999999999999999999999753210    


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC  185 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA  185 (348)
                      .           .+.++|.++....+...+..+.+ +.  .......++.++++.+++.  .++.+.+|||||+||++||
T Consensus        68 ~-----------~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~la  136 (223)
T TIGR03740        68 D-----------LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIA  136 (223)
T ss_pred             c-----------cccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHH
Confidence            0           01234443433333333333322 11  1223455677888999886  3677899999999999999


Q ss_pred             HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      |||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|++|+++..+++.+
T Consensus       137 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       137 IALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             HHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            999999999999999999999999999999999864 48999999999999999999999999999999888653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-45  Score=318.33  Aligned_cols=215  Identities=22%  Similarity=0.346  Sum_probs=177.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++|||++..         ++.+|+++||++.+||+++|+||||||||||||.|+|.+.|++|++.++|.+...-.  
T Consensus         1 mi~a~nls~~~~---------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~--   69 (259)
T COG4559           1 MIRAENLSYSLA---------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP--   69 (259)
T ss_pred             CeeeeeeEEEee---------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCC--
Confidence            589999999984         478999999999999999999999999999999999999999999999997643211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----CCC--H--HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----GID--P--QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~--~--~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                               ..++.+..+..+|+..+.+.+++.+.. ++..    +..  .  ...++++...++.  ..+.+.+|||||
T Consensus        70 ---------~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGE  140 (259)
T COG4559          70 ---------PEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGE  140 (259)
T ss_pred             ---------HHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchH
Confidence                     123334445556666666666676654 2321    111  1  2256678887775  367788999999


Q ss_pred             HHHHHHHHHHcc------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          179 RRRVQICMGLLK------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       179 rQRv~lAraL~~------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      ||||.+||.|++      ++++|+||||||+||...+..++++.++++++ |..|+.|-||++.+..|||||++|++||+
T Consensus       141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv  219 (259)
T COG4559         141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRV  219 (259)
T ss_pred             HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeE
Confidence            999999999975      45699999999999999999999999999976 79999999999999999999999999999


Q ss_pred             eeecChhHHHHhh
Q 018938          253 QLAMPMDKVKEAS  265 (348)
Q Consensus       253 ~~~g~~~~~~~~~  265 (348)
                      ++.|+++++...+
T Consensus       220 ~a~g~p~~vlt~E  232 (259)
T COG4559         220 IASGSPQDVLTDE  232 (259)
T ss_pred             eecCCHHHhcCHH
Confidence            9999999988653

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-45  Score=336.61  Aligned_cols=218  Identities=18%  Similarity=0.224  Sum_probs=171.0

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc--C---CCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM--V---EPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~--~---~~G~i~i~G~~  102 (348)
                      .++|+++|+++.|+         .+++|+++||+|++||+++|+||||||||||+++|+|++.  |   ++|+|.++|.+
T Consensus        10 ~~~l~i~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~   80 (259)
T PRK14274         10 QEVYQINGMNLWYG---------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSN   80 (259)
T ss_pred             CceEEEeeEEEEEC---------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEE
Confidence            35899999999994         3579999999999999999999999999999999999986  3   58999999986


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CC-CCH----HHHHHHHHHcCCC------cCc
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AG-IDP----QRRAELIKVLDID------LSW  169 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~l~~l~l~------~~~  169 (348)
                      +.... .        ....++..++|+++....+.....+++.+..  .+ ...    +++.++++.+++.      .+.
T Consensus        81 ~~~~~-~--------~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~  151 (259)
T PRK14274         81 ILKGK-V--------DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT  151 (259)
T ss_pred             ccccc-c--------CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhC
Confidence            53110 0        0012234456665544333332223332221  11 111    2345677777763      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ++.+||||||||++|||||+.+|++|||||||+|||+.++..++++|.++. + +.|||++|||++++..+||++++|++
T Consensus       152 ~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~  229 (259)
T PRK14274        152 QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYM  229 (259)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEEC
Confidence            789999999999999999999999999999999999999999999999985 3 68999999999999999999999999


Q ss_pred             CEEeeecChhHHHHhh
Q 018938          250 GKLQLAMPMDKVKEAS  265 (348)
Q Consensus       250 G~i~~~g~~~~~~~~~  265 (348)
                      |+++..|+++++....
T Consensus       230 G~i~~~g~~~~~~~~~  245 (259)
T PRK14274        230 GELVECNDTNKMFSNP  245 (259)
T ss_pred             CEEEEECCHHHHhhCC
Confidence            9999999999886543

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-45  Score=336.21  Aligned_cols=217  Identities=19%  Similarity=0.268  Sum_probs=170.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC---CcC--CCceEEEcCeec
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK---HMV--EPEMVKVLGRSA  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl---~~~--~~G~i~i~G~~~  103 (348)
                      ++|+++|+++.|+         .+++|+++||+|++||+++|+||||||||||+++|+|+   ++|  ++|+|.++|.++
T Consensus         2 ~~l~~~~~~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~   72 (250)
T PRK14245          2 VKIDARDVNFWYG---------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI   72 (250)
T ss_pred             cEEEEEEEEEEEC---------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEec
Confidence            5799999999994         35799999999999999999999999999999999996   344  489999999865


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC------cCc
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~  169 (348)
                      .....     .    ...+++.++|+++...++. .+..+ +.+..  .+. .    ...+.++++.+++.      .++
T Consensus        73 ~~~~~-----~----~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  142 (250)
T PRK14245         73 YDKGV-----Q----VDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKE  142 (250)
T ss_pred             ccccc-----c----HHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhC
Confidence            32100     0    0123345666655443332 23333 22221  111 1    13456778888873      256


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. + ++|||++|||++++..+||++++|++
T Consensus       143 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~  220 (250)
T PRK14245        143 SAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYM  220 (250)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence            789999999999999999999999999999999999999999999999984 3 78999999999999999999999999


Q ss_pred             CEEeeecChhHHHHhhh
Q 018938          250 GKLQLAMPMDKVKEASK  266 (348)
Q Consensus       250 G~i~~~g~~~~~~~~~~  266 (348)
                      |++++.|+++++.+...
T Consensus       221 G~~~~~~~~~~~~~~~~  237 (250)
T PRK14245        221 GEMVEYDDTKKIFTNPE  237 (250)
T ss_pred             CEEEEECCHHHHhcCCC
Confidence            99999999999876443

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=5.3e-45  Score=332.87  Aligned_cols=212  Identities=23%  Similarity=0.362  Sum_probs=163.8

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+.       +.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....   
T Consensus         1 i~~~~l~~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---   70 (237)
T cd03252           1 ITFEHVRFRYKP-------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD---   70 (237)
T ss_pred             CEEEEEEEecCC-------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcC---
Confidence            468999999953       2357999999999999999999999999999999999999999999999997542110   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHH---------HHHHHc--CCC--cCccCCCCCH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRA---------ELIKVL--DID--LSWRMHKVSD  176 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~l~~l--~l~--~~~~~~~LSg  176 (348)
                              ...+++.++|+++...++ ..+..+.+ +...........         ++++.+  ++.  .++++.+|||
T Consensus        71 --------~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSg  141 (237)
T cd03252          71 --------PAWLRRQVGVVLQENVLF-NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG  141 (237)
T ss_pred             --------HHHHhhcEEEEcCCchhc-cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCH
Confidence                    011234456665543332 23444333 222222222222         223333  222  2457899999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. + |.|||++|||++++. .||++++|++|++++.+
T Consensus       142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~  218 (237)
T cd03252         142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQG  218 (237)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEc
Confidence            99999999999999999999999999999999999999999985 3 899999999999996 59999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +++++...
T Consensus       219 ~~~~~~~~  226 (237)
T cd03252         219 SHDELLAE  226 (237)
T ss_pred             CHHHHHhc
Confidence            98887653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=4.6e-45  Score=332.44  Aligned_cols=212  Identities=25%  Similarity=0.355  Sum_probs=170.6

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|+         .+.+|+++||+|++|++++|+||||||||||+++|+|+++|+.|+|.++|.++.....  
T Consensus         1 l~~~~l~~~~~---------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--   69 (232)
T cd03300           1 IELENVSKFYG---------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--   69 (232)
T ss_pred             CEEEeEEEEeC---------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--
Confidence            46899999994         3579999999999999999999999999999999999999999999999976532111  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                 .+..++++++....+...+..+.+ +.  ..+..    ..++.++++.+++.  .++.+.+||+||+||
T Consensus        70 -----------~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr  138 (232)
T cd03300          70 -----------HKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQR  138 (232)
T ss_pred             -----------hhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence                       012344444443333333333322 11  11112    23456778888886  367889999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      ++|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++||+++++..+||++++|++|++++.++.+++
T Consensus       139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~  218 (232)
T cd03300         139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI  218 (232)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence            99999999999999999999999999999999999998765689999999999999999999999999999999988777


Q ss_pred             HHh
Q 018938          262 KEA  264 (348)
Q Consensus       262 ~~~  264 (348)
                      ...
T Consensus       219 ~~~  221 (232)
T cd03300         219 YEE  221 (232)
T ss_pred             HhC
Confidence            543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=5.9e-45  Score=330.26  Aligned_cols=211  Identities=20%  Similarity=0.352  Sum_probs=165.7

Q ss_pred             CCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938           25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF  104 (348)
Q Consensus        25 ~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~  104 (348)
                      ...+++|+++||++.|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+.
T Consensus         2 ~~~~~~i~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~   72 (225)
T PRK10247          2 QENSPLLQLQNVGYLAG---------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS   72 (225)
T ss_pred             CCCCceEEEeccEEeeC---------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcC
Confidence            34456899999999994         357999999999999999999999999999999999999999999999997542


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCC--CCHHHHHHHHHHcCCC---cCccCCCCCH
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAG--IDPQRRAELIKVLDID---LSWRMHKVSD  176 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~--~~~~~~~~~l~~l~l~---~~~~~~~LSg  176 (348)
                      ....           ..++..++|+++...++.. +..+ +.+.  ...  ....++.++++.+++.   .++++.+|||
T Consensus        73 ~~~~-----------~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~  140 (225)
T PRK10247         73 TLKP-----------EIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSG  140 (225)
T ss_pred             cCCH-----------HHHHhccEEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence            2110           1123445555544333322 3333 2221  111  1234456788889884   3678999999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc-CCEEeee
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-HGKLQLA  255 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~-~G~i~~~  255 (348)
                      ||+|||+|||||+.+|++|||||||+|||+.++..+.++|.++.++.|.|||++|||++++. .||++++|+ ++..+.+
T Consensus       141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~  219 (225)
T PRK10247        141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQE  219 (225)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhh
Confidence            99999999999999999999999999999999999999999987766899999999999996 699999995 4444444


Q ss_pred             cC
Q 018938          256 MP  257 (348)
Q Consensus       256 g~  257 (348)
                      |+
T Consensus       220 ~~  221 (225)
T PRK10247        220 AR  221 (225)
T ss_pred             hh
Confidence            44

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9e-45  Score=338.97  Aligned_cols=217  Identities=21%  Similarity=0.320  Sum_probs=172.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|++.      ...++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.....
T Consensus         3 ~~l~~~~l~~~~~~~------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~   76 (277)
T PRK13642          3 KILEVENLVFKYEKE------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV   76 (277)
T ss_pred             ceEEEEEEEEEcCCC------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCH
Confidence            379999999999531      12459999999999999999999999999999999999999999999999986432110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                 ..++..++|++++.. .....+..+ +.++.  .+...    +++.++++.+++.  .++++.+|||||
T Consensus        77 -----------~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~  145 (277)
T PRK13642         77 -----------WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQ  145 (277)
T ss_pred             -----------HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHH
Confidence                       112344556544431 122233333 32221  12222    2346778888875  366789999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      +||++|||||+.+|++|||||||++||+.++..++++|++++++.|.|||++|||++++. .||++++|++|++++.|++
T Consensus       146 ~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~  224 (277)
T PRK13642        146 KQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAP  224 (277)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCH
Confidence            999999999999999999999999999999999999999997766999999999999997 5999999999999999998


Q ss_pred             hHHHH
Q 018938          259 DKVKE  263 (348)
Q Consensus       259 ~~~~~  263 (348)
                      +++..
T Consensus       225 ~~~~~  229 (277)
T PRK13642        225 SELFA  229 (277)
T ss_pred             HHHhc
Confidence            88764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-44  Score=336.79  Aligned_cols=217  Identities=18%  Similarity=0.198  Sum_probs=171.1

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~  102 (348)
                      .++|+++||+++|+         ++.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.+
T Consensus        11 ~~~l~i~nl~~~~~---------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~   81 (269)
T PRK14259         11 NIIISLQNVTISYG---------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTD   81 (269)
T ss_pred             CceEEEEeEEEEEC---------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence            45799999999994         3579999999999999999999999999999999999987     589999999976


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC---HHHHHHHHHHcCCC------cCcc
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID---PQRRAELIKVLDID------LSWR  170 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~---~~~~~~~l~~l~l~------~~~~  170 (348)
                      +.... .        -...+++.++|+++...++.. +..+.+ +..  ....   .+.+.++++.+++.      .+++
T Consensus        82 i~~~~-~--------~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~  151 (269)
T PRK14259         82 LYDPR-V--------DPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNES  151 (269)
T ss_pred             ccccc-C--------CHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCC
Confidence            42110 0        001233456666555443332 443332 221  1111   23345667777652      3567


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC-
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH-  249 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~-  249 (348)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++ + +.|||++|||++++..+||++++|++ 
T Consensus       152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~  229 (269)
T PRK14259        152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAE  229 (269)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEecc
Confidence            89999999999999999999999999999999999999999999999984 3 68999999999999999999999996 


Q ss_pred             ----------CEEeeecChhHHHHhh
Q 018938          250 ----------GKLQLAMPMDKVKEAS  265 (348)
Q Consensus       250 ----------G~i~~~g~~~~~~~~~  265 (348)
                                |++++.|+++++.+.+
T Consensus       230 ~~~~~~~g~~g~~~~~~~~~~~~~~~  255 (269)
T PRK14259        230 EVEGGSGGKVGYLVEFNETKKIFNSP  255 (269)
T ss_pred             ccccccccccceEEEeCCHHHHHhCc
Confidence                      6789999999887644

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=332.73  Aligned_cols=217  Identities=21%  Similarity=0.236  Sum_probs=172.0

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeec
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSA  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~  103 (348)
                      ++|+++|++++|+         ++.+|+++||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++
T Consensus         3 ~~l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i   73 (251)
T PRK14270          3 IKMESKNLNLWYG---------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI   73 (251)
T ss_pred             cEEEEEEeEEEEC---------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec
Confidence            6899999999994         35799999999999999999999999999999999999875     789999999865


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCC-C----HHHHHHHHHHcCCC------cCc
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGI-D----PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~----~~~~~~~l~~l~l~------~~~  169 (348)
                      .....         -....++.++|+++....+. .+..+ +.+.  ..+. .    ..++.++++.+++.      .++
T Consensus        74 ~~~~~---------~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  143 (251)
T PRK14270         74 YDKDV---------DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK  143 (251)
T ss_pred             ccccc---------cHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhC
Confidence            32100         00112344566655443333 34333 2221  1111 1    12345678888763      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||++||+++++..+||++++|++
T Consensus       144 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~  221 (251)
T PRK14270        144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLM  221 (251)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEEC
Confidence            7899999999999999999999999999999999999999999999999864  58999999999999999999999999


Q ss_pred             CEEeeecChhHHHHhhh
Q 018938          250 GKLQLAMPMDKVKEASK  266 (348)
Q Consensus       250 G~i~~~g~~~~~~~~~~  266 (348)
                      |++++.++++++.....
T Consensus       222 G~i~~~~~~~~~~~~~~  238 (251)
T PRK14270        222 GDLIEFNKTEKIFLEPQ  238 (251)
T ss_pred             CeEEEeCCHHHHhcCCC
Confidence            99999999998865443

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.9e-45  Score=327.06  Aligned_cols=203  Identities=26%  Similarity=0.445  Sum_probs=164.3

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      ++++||+++|+           ..+.++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....   
T Consensus         1 ~~~~~l~~~~~-----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---   66 (213)
T TIGR01277         1 LALDKVRYEYE-----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA---   66 (213)
T ss_pred             CeEEeeeEEeC-----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC---
Confidence            46899999994           2467999999999999999999999999999999999999999999998643210   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-C--CC---CHHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-A--GI---DPQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                ..++.++|+++....+...+..+.+ +.. .  ..   ...++.++++.+++.  .++.+.+|||||+||
T Consensus        67 ----------~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  136 (213)
T TIGR01277        67 ----------PYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQR  136 (213)
T ss_pred             ----------hhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHH
Confidence                      1123455555554444444443332 221 1  11   123456788888885  367889999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      ++|||||+.+|++|||||||++||+.++..+.++|+++.++.+.|||++||+++++..+||++++|++|++++.|.
T Consensus       137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            9999999999999999999999999999999999999876668999999999999999999999999999988764

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.7e-45  Score=374.91  Aligned_cols=234  Identities=21%  Similarity=0.253  Sum_probs=181.5

Q ss_pred             CCeEEEeceEEEecCCCC--CCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccc
Q 018938           28 KPTVEINALKFTYPGIDG--HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH  105 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~--~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~  105 (348)
                      .++|+++||++.|+...+  .+..+...+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~  390 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT  390 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence            368999999999952100  000012469999999999999999999999999999999999999999999999986532


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hc--cCCC-C----HHHHHHHHHHcCCC---cCccCC
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FG--VAGI-D----PQRRAELIKVLDID---LSWRMH  172 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~--~~~~-~----~~~~~~~l~~l~l~---~~~~~~  172 (348)
                      ...    ..    ...+++.++|++++.  .++..+++.+.+ +.  ..+. .    .+++.++++.+++.   .+++++
T Consensus       391 ~~~----~~----~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~  462 (623)
T PRK10261        391 LSP----GK----LQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH  462 (623)
T ss_pred             CCH----HH----HHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence            110    00    001233466665543  233344444332 11  1111 1    13456789999985   367899


Q ss_pred             CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      +|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||+||||++++..+||+|++|++|++
T Consensus       463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i  542 (623)
T PRK10261        463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI  542 (623)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            99999999999999999999999999999999999999999999999877799999999999999999999999999999


Q ss_pred             eeecChhHHHHhhhhhh
Q 018938          253 QLAMPMDKVKEASKLSL  269 (348)
Q Consensus       253 ~~~g~~~~~~~~~~~~~  269 (348)
                      ++.|+++++...+.+.+
T Consensus       543 v~~g~~~~i~~~p~~~~  559 (623)
T PRK10261        543 VEIGPRRAVFENPQHPY  559 (623)
T ss_pred             EEecCHHHHhcCCCCHH
Confidence            99999999876554433

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.8e-45  Score=333.93  Aligned_cols=217  Identities=24%  Similarity=0.316  Sum_probs=170.3

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCeec
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRSA  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~~  103 (348)
                      ++|+++|++++|+         .+++|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|.++
T Consensus         3 ~~l~~~~l~~~~~---------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~   73 (251)
T PRK14251          3 NIISAKDVHLSYG---------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNI   73 (251)
T ss_pred             ceEEEEeeEEEEC---------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEc
Confidence            4799999999994         3679999999999999999999999999999999999986     4799999999864


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC------cCc
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~  169 (348)
                      .....     .    ...+++.+++++++...+. .+..+ +.+..  .+. .    ..++.++++.+++.      .++
T Consensus        74 ~~~~~-----~----~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  143 (251)
T PRK14251         74 YGSKM-----D----LVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDR  143 (251)
T ss_pred             ccccc-----h----HHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhcc
Confidence            32100     0    0112334555544433332 23333 22221  111 1    12345677777773      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      .+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|+++. + +.|||++|||++++..+||++++|++
T Consensus       144 ~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~  221 (251)
T PRK14251        144 NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMN  221 (251)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEEC
Confidence            789999999999999999999999999999999999999999999999985 3 68999999999999999999999999


Q ss_pred             CEEeeecChhHHHHhhh
Q 018938          250 GKLQLAMPMDKVKEASK  266 (348)
Q Consensus       250 G~i~~~g~~~~~~~~~~  266 (348)
                      |+++..++.+++...+.
T Consensus       222 G~i~~~~~~~~~~~~~~  238 (251)
T PRK14251        222 GDLIEAGPTEEMFIAPK  238 (251)
T ss_pred             CEEEEeCCHHHHHhCCC
Confidence            99999999888765443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=9.9e-45  Score=365.62  Aligned_cols=215  Identities=22%  Similarity=0.352  Sum_probs=176.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|..+.....
T Consensus        10 ~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   80 (510)
T PRK15439         10 PLLCARSISKQYS---------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP   80 (510)
T ss_pred             ceEEEEeEEEEeC---------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence            5799999999994         3679999999999999999999999999999999999999999999999976422110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCC--CHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGI--DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~  183 (348)
                      .          ...+..++|+++....+..+++.+.+ +.....  ..+++.++++.+++.  .++++.+|||||||||+
T Consensus        81 ~----------~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~  150 (510)
T PRK15439         81 A----------KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVE  150 (510)
T ss_pred             H----------HHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHH
Confidence            0          00112355665554444455555443 222111  124567788889986  36789999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      |||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+||++++|++|++++.|+++++..
T Consensus       151 la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (510)
T PRK15439        151 ILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST  229 (510)
T ss_pred             HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence            99999999999999999999999999999999999865 48999999999999999999999999999999999888754

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=332.70  Aligned_cols=217  Identities=21%  Similarity=0.256  Sum_probs=169.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc--C---CCceEEEcCeec
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM--V---EPEMVKVLGRSA  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~--~---~~G~i~i~G~~~  103 (348)
                      ++|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+..  |   ++|+|.++|.++
T Consensus         4 ~~l~~~~l~~~~~---------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~   74 (252)
T PRK14239          4 PILQVSDLSVYYN---------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI   74 (252)
T ss_pred             ceEEEEeeEEEEC---------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence            4799999999994         3579999999999999999999999999999999999853  5   489999999765


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC------cCc
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~  169 (348)
                      .....         ....+++.++|++++...+. .+..+ +.+..  .+. .    ...+.++++.+++.      .++
T Consensus        75 ~~~~~---------~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  144 (252)
T PRK14239         75 YSPRT---------DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHD  144 (252)
T ss_pred             cCccc---------chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhc
Confidence            21100         00122344666655543333 33333 22221  111 1    12345567777752      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      .+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+  +.|||++|||++++..+||++++|++
T Consensus       145 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~  222 (252)
T PRK14239        145 SALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLD  222 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEEC
Confidence            7899999999999999999999999999999999999999999999999853  58999999999999999999999999


Q ss_pred             CEEeeecChhHHHHhhh
Q 018938          250 GKLQLAMPMDKVKEASK  266 (348)
Q Consensus       250 G~i~~~g~~~~~~~~~~  266 (348)
                      |++++.|+.+++.+.+.
T Consensus       223 G~i~~~g~~~~~~~~~~  239 (252)
T PRK14239        223 GDLIEYNDTKQMFMNPK  239 (252)
T ss_pred             CEEEEeCCHHHHHhCCC
Confidence            99999999998866443

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=334.45  Aligned_cols=220  Identities=19%  Similarity=0.305  Sum_probs=171.8

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-----CceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-----PEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-----~G~i~i~G~~  102 (348)
                      -++|+++|++++|+         ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.++|.+
T Consensus         5 ~~~l~~~nl~~~~~---------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~   75 (261)
T PRK14258          5 IPAIKVNNLSFYYD---------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN   75 (261)
T ss_pred             cceEEEeeEEEEeC---------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEE
Confidence            35799999999994         357999999999999999999999999999999999999875     6888888865


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCC-C----HHHHHHHHHHcCCC------cC
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGI-D----PQRRAELIKVLDID------LS  168 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~----~~~~~~~l~~l~l~------~~  168 (348)
                      +.....     .    ...+++.++|.++...++. .+..+ +.+.  ..+. .    .+.+.++++.+++.      .+
T Consensus        76 i~~~~~-----~----~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  145 (261)
T PRK14258         76 IYERRV-----N----LNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIH  145 (261)
T ss_pred             hhcccc-----c----hHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhc
Confidence            421000     0    0112334555544433333 34433 2221  1111 1    12345677788763      25


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +.+.+|||||+||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++++..+||++++|+
T Consensus       146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~  225 (261)
T PRK14258        146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK  225 (261)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence            67899999999999999999999999999999999999999999999999865568999999999999999999999999


Q ss_pred             C-----CEEeeecChhHHHHhhh
Q 018938          249 H-----GKLQLAMPMDKVKEASK  266 (348)
Q Consensus       249 ~-----G~i~~~g~~~~~~~~~~  266 (348)
                      +     |+++..++++++.+.+.
T Consensus       226 ~~~~~~G~i~~~~~~~~~~~~~~  248 (261)
T PRK14258        226 GNENRIGQLVEFGLTKKIFNSPH  248 (261)
T ss_pred             cCCCcCceEEEeCCHHHHHhCCC
Confidence            9     99999999999876544

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.2e-45  Score=349.75  Aligned_cols=214  Identities=22%  Similarity=0.349  Sum_probs=172.5

Q ss_pred             ceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCc
Q 018938           35 ALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD  114 (348)
Q Consensus        35 ~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~  114 (348)
                      ||+++|+         +.. + ++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....     .
T Consensus         4 ~l~~~~~---------~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~-----~   67 (354)
T TIGR02142         4 RFSKRLG---------DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK-----G   67 (354)
T ss_pred             EEEEEEC---------CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcc-----c
Confidence            8999994         233 5 9999999999999999999999999999999999999999999986532110     0


Q ss_pred             ccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHH
Q 018938          115 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMG  187 (348)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAra  187 (348)
                      ..  ....++.++|++++..++..+++.+++ ++.....    ..++.++++.+++.  .++++.+|||||||||+||||
T Consensus        68 ~~--~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAra  145 (354)
T TIGR02142        68 IF--LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRA  145 (354)
T ss_pred             cc--cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence            00  011234566666655555555554433 3222111    23467788999986  477899999999999999999


Q ss_pred             HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhhh
Q 018938          188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  266 (348)
                      |+.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||++++|++|+++..|+++++...+.
T Consensus       146 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~  224 (354)
T TIGR02142       146 LLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD  224 (354)
T ss_pred             HHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcC
Confidence            9999999999999999999999999999999987668999999999999999999999999999999999998876544

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-44  Score=334.50  Aligned_cols=221  Identities=18%  Similarity=0.184  Sum_probs=173.8

Q ss_pred             cCCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEE
Q 018938           24 MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKV   98 (348)
Q Consensus        24 m~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i   98 (348)
                      |+...++|+++||+++|+         ++++|+|+||+|++||+++|+||||||||||+++|+|++.     |++|+|.+
T Consensus        14 ~~~~~~~l~~~nl~~~~~---------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~   84 (267)
T PRK14237         14 FPEEEIALSTKDLHVYYG---------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY   84 (267)
T ss_pred             cCCCCeEEEEeeEEEEEC---------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE
Confidence            455567899999999994         3679999999999999999999999999999999999986     47999999


Q ss_pred             cCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC----
Q 018938           99 LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID----  166 (348)
Q Consensus        99 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~----  166 (348)
                      +|.++.....     .    ....++.++|+++....+. .+..+ +.+..  .+. .    ..++.++++.+++.    
T Consensus        85 ~g~~~~~~~~-----~----~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~  154 (267)
T PRK14237         85 RGIDINRKEI-----N----VYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK  154 (267)
T ss_pred             CCEEcccccC-----C----hHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh
Confidence            9976521100     0    0112344566655433332 23333 32221  111 1    12345667777763    


Q ss_pred             --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                        .++++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++||+++++..+||++
T Consensus       155 ~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i  232 (267)
T PRK14237        155 DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYT  232 (267)
T ss_pred             hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEE
Confidence              356789999999999999999999999999999999999999999999999984 3 689999999999999999999


Q ss_pred             EEEcCCEEeeecChhHHHHhh
Q 018938          245 VYVAHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       245 ~~l~~G~i~~~g~~~~~~~~~  265 (348)
                      ++|++|++++.|+++++....
T Consensus       233 ~~l~~G~i~~~g~~~~~~~~~  253 (267)
T PRK14237        233 AFFYLGDLIEYDKTRNIFTNP  253 (267)
T ss_pred             EEEECCEEEEeCCHHHHhcCC
Confidence            999999999999998886543

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=334.08  Aligned_cols=215  Identities=19%  Similarity=0.249  Sum_probs=169.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~~  104 (348)
                      +|+++|++++|+         ++++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.
T Consensus         4 ~l~i~~v~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~   74 (258)
T PRK14241          4 RIDVKDLNIYYG---------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY   74 (258)
T ss_pred             cEEEeeEEEEEC---------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecc
Confidence            699999999995         35799999999999999999999999999999999999874     6999999997642


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC-C----HHHHHHHHHHcCCC------cCcc
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI-D----PQRRAELIKVLDID------LSWR  170 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~----~~~~~~~l~~l~l~------~~~~  170 (348)
                      ... .        ....+++.++|+++....+...+..+.+ +..  ... .    .+.+.++++.+++.      .++.
T Consensus        75 ~~~-~--------~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  145 (258)
T PRK14241         75 GPG-V--------DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKP  145 (258)
T ss_pred             ccc-c--------ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCC
Confidence            100 0        0012234456665544444333443322 211  111 1    12345677778762      3567


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc--
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA--  248 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~--  248 (348)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++ + ++|||++||+++++..+||++++|+  
T Consensus       146 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~  223 (258)
T PRK14241        146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLE  223 (258)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecc
Confidence            89999999999999999999999999999999999999999999999985 3 6899999999999999999999996  


Q ss_pred             ----CCEEeeecChhHHHHh
Q 018938          249 ----HGKLQLAMPMDKVKEA  264 (348)
Q Consensus       249 ----~G~i~~~g~~~~~~~~  264 (348)
                          +|++++.++++++...
T Consensus       224 ~~~~~g~i~~~~~~~~~~~~  243 (258)
T PRK14241        224 ATGKPGRLVEIDDTEKIFSN  243 (258)
T ss_pred             cCCCCceEEecCCHHHHHhC
Confidence                7999999999887653

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-45  Score=367.00  Aligned_cols=215  Identities=18%  Similarity=0.274  Sum_probs=174.3

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++|++++|+         ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus         4 ~~l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~   74 (510)
T PRK09700          4 PYISMAGIGKSFG---------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDH   74 (510)
T ss_pred             ceEEEeeeEEEcC---------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCH
Confidence            5799999999994         3579999999999999999999999999999999999999999999999976432110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc------CCC---C----HHHHHHHHHHcCCC--cCccCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV------AGI---D----PQRRAELIKVLDID--LSWRMH  172 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~---~----~~~~~~~l~~l~l~--~~~~~~  172 (348)
                      .          ...+..++|+++....+..+++.+.+ +..      .+.   +    .+++.++++.+++.  .++++.
T Consensus        75 ~----------~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~  144 (510)
T PRK09700         75 K----------LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA  144 (510)
T ss_pred             H----------HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh
Confidence            0          01123456665554444444444432 211      011   1    13456788888886  367899


Q ss_pred             CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      +|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+||++++|++|++
T Consensus       145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~~l~~G~i  223 (510)
T PRK09700        145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYTVMKDGSS  223 (510)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999875 489999999999999999999999999999


Q ss_pred             eeecChhHHHH
Q 018938          253 QLAMPMDKVKE  263 (348)
Q Consensus       253 ~~~g~~~~~~~  263 (348)
                      +..|+++++..
T Consensus       224 ~~~g~~~~~~~  234 (510)
T PRK09700        224 VCSGMVSDVSN  234 (510)
T ss_pred             eeecchhhCCH
Confidence            99998887653

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.2e-44  Score=336.58  Aligned_cols=227  Identities=21%  Similarity=0.351  Sum_probs=173.7

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||++.|+...-.....++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+.....
T Consensus         2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence            37999999999952000000003679999999999999999999999999999999999999999999999975422110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCC---cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDID---LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~---~~~~~~~LS  175 (348)
                      .        ....+++.++|+++...  +....+..+.+ +.   .....    ...+.++++.+++.   .++.+.+||
T Consensus        82 ~--------~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS  153 (268)
T PRK10419         82 A--------QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLS  153 (268)
T ss_pred             h--------HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCC
Confidence            0        00012334555544421  22223333321 11   11111    12456788888885   367889999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++.+.|||++||+++++..+||++++|++|++++.
T Consensus       154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~  233 (268)
T PRK10419        154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET  233 (268)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence            99999999999999999999999999999999999999999998766689999999999999999999999999999999


Q ss_pred             cChhHHHH
Q 018938          256 MPMDKVKE  263 (348)
Q Consensus       256 g~~~~~~~  263 (348)
                      |+++++..
T Consensus       234 g~~~~~~~  241 (268)
T PRK10419        234 QPVGDKLT  241 (268)
T ss_pred             CChhhccC
Confidence            99888753

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=8.2e-45  Score=365.60  Aligned_cols=214  Identities=20%  Similarity=0.306  Sum_probs=173.9

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus         3 ~~i~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~   73 (501)
T PRK10762          3 ALLQLKGIDKAFP---------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP   73 (501)
T ss_pred             ceEEEeeeEEEeC---------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence            4799999999994         3579999999999999999999999999999999999999999999999976422110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC------CCC----HHHHHHHHHHcCCC--cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA------GID----PQRRAELIKVLDID--LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~----~~~~~~~l~~l~l~--~~~~~~~LS  175 (348)
                      .          ...++.++|+++....+..+++.+.+ ++..      ..+    ..++.++++.+++.  .++++.+||
T Consensus        74 ~----------~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS  143 (501)
T PRK10762         74 K----------SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELS  143 (501)
T ss_pred             H----------HHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCC
Confidence            0          01123455665554444445555433 2211      111    13456788888886  367889999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||++++|++|+++..
T Consensus       144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~  222 (501)
T PRK10762        144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE  222 (501)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence            9999999999999999999999999999999999999999999864 589999999999999999999999999999999


Q ss_pred             cChhHHH
Q 018938          256 MPMDKVK  262 (348)
Q Consensus       256 g~~~~~~  262 (348)
                      ++++++.
T Consensus       223 ~~~~~~~  229 (501)
T PRK10762        223 REVADLT  229 (501)
T ss_pred             cCcCcCC
Confidence            8887664

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-44  Score=331.24  Aligned_cols=217  Identities=18%  Similarity=0.234  Sum_probs=171.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc--C---CCceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM--V---EPEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~--~---~~G~i~i~G~~~~  104 (348)
                      .|+++|++++|+         ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++  |   ++|+|.++|.++.
T Consensus         4 ~l~~~nl~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~   74 (252)
T PRK14256          4 KVKLEQLNVHFG---------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIY   74 (252)
T ss_pred             EEEEEEEEEEeC---------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcc
Confidence            689999999994         3579999999999999999999999999999999999985  3   5899999998653


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CC-CC----HHHHHHHHHHcCCC------cCcc
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AG-ID----PQRRAELIKVLDID------LSWR  170 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~----~~~~~~~l~~l~l~------~~~~  170 (348)
                      ....     .    ...+++.++|+++....+...+..+.+ +..  .. ..    .+++.++++.+++.      .+..
T Consensus        75 ~~~~-----~----~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  145 (252)
T PRK14256         75 DRGV-----D----PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSN  145 (252)
T ss_pred             cccC-----C----hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCC
Confidence            2100     0    011234456665554444434443322 211  11 11    13356677788863      2456


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||++||+++++..+||++++|++|
T Consensus       146 ~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G  223 (252)
T PRK14256        146 AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMG  223 (252)
T ss_pred             cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECC
Confidence            899999999999999999999999999999999999999999999999864  579999999999999999999999999


Q ss_pred             EEeeecChhHHHHhhh
Q 018938          251 KLQLAMPMDKVKEASK  266 (348)
Q Consensus       251 ~i~~~g~~~~~~~~~~  266 (348)
                      ++++.++++++...+.
T Consensus       224 ~i~~~~~~~~~~~~~~  239 (252)
T PRK14256        224 DLVECGETKKIFTTPE  239 (252)
T ss_pred             EEEEeCCHHHHHhCCC
Confidence            9999999988876543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.3e-44  Score=328.89  Aligned_cols=212  Identities=26%  Similarity=0.388  Sum_probs=170.8

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         .+.+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....   
T Consensus         1 i~i~~l~~~~~---------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~---   68 (237)
T TIGR00968         1 IEIANISKRFG---------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---   68 (237)
T ss_pred             CEEEEEEEEEC---------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC---
Confidence            46899999995         357999999999999999999999999999999999999999999999997642110   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                ..++.++|+++....+...+..+.+ +..  .+..    .+.+.++++.+++.  .++.+.+||+||+||
T Consensus        69 ----------~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr  138 (237)
T TIGR00968        69 ----------ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQR  138 (237)
T ss_pred             ----------hhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHH
Confidence                      0122344554443333333333322 211  1111    23456778888875  366789999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      ++|||||+.+|+++||||||+|||+.++..++++|+++.++.++|||++||+++++..+||++++|++|++++.++.+++
T Consensus       139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  218 (237)
T TIGR00968       139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV  218 (237)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence            99999999999999999999999999999999999998765589999999999999999999999999999999998887


Q ss_pred             HHh
Q 018938          262 KEA  264 (348)
Q Consensus       262 ~~~  264 (348)
                      ...
T Consensus       219 ~~~  221 (237)
T TIGR00968       219 YDH  221 (237)
T ss_pred             HcC
Confidence            653

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=1.7e-44  Score=329.39  Aligned_cols=211  Identities=23%  Similarity=0.365  Sum_probs=170.0

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         . ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  
T Consensus         1 l~~~~l~~~~~---------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--   68 (235)
T cd03299           1 LKVENLSKDWK---------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--   68 (235)
T ss_pred             CeeEeEEEEeC---------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--
Confidence            46899999994         2 38999999999999999999999999999999999999999999999976532110  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                 .++.+++.++....+...+..+. .+..  ....    .+.+.++++.+++.  .++++.+|||||+||
T Consensus        69 -----------~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  137 (235)
T cd03299          69 -----------EKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQR  137 (235)
T ss_pred             -----------hHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHH
Confidence                       12234555444333333343332 2211  1111    12346778888885  467899999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      ++|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||++||+++++..+||++++|++|++++.++.+++
T Consensus       138 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  217 (235)
T cd03299         138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV  217 (235)
T ss_pred             HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            99999999999999999999999999999999999998765689999999999999999999999999999999988877


Q ss_pred             HHh
Q 018938          262 KEA  264 (348)
Q Consensus       262 ~~~  264 (348)
                      .+.
T Consensus       218 ~~~  220 (235)
T cd03299         218 FKK  220 (235)
T ss_pred             HhC
Confidence            553

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=1.6e-44  Score=325.97  Aligned_cols=203  Identities=25%  Similarity=0.396  Sum_probs=158.5

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|++       +.+.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+.....  
T Consensus         3 l~~~~l~~~~~~-------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~--   73 (220)
T cd03245           3 IEFRNVSFSYPN-------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP--   73 (220)
T ss_pred             EEEEEEEEEcCC-------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCH--
Confidence            789999999952       12569999999999999999999999999999999999999999999999975421100  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcCCC--cCc-----------cCCCCCH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID--LSW-----------RMHKVSD  176 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~-----------~~~~LSg  176 (348)
                               ...++.++|.++...++. .+..+.+ +...........++++.+++.  .++           .+.+|||
T Consensus        74 ---------~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSg  143 (220)
T cd03245          74 ---------ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG  143 (220)
T ss_pred             ---------HHHHhhEEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCH
Confidence                     112334566655443332 3444433 222222334455666766663  122           3469999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||++|||||+.+|++|||||||+|||+.++..++++|+++++  +.|||++|||++++ .+||++++|++|++++.
T Consensus       144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~  219 (220)
T cd03245         144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD  219 (220)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence            999999999999999999999999999999999999999999864  38999999999987 69999999999999764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=1.2e-44  Score=325.74  Aligned_cols=206  Identities=24%  Similarity=0.351  Sum_probs=161.8

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      +++ ||+|+|+         ++.+  |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.....  
T Consensus         2 ~~~-~l~~~~~---------~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--   66 (214)
T cd03297           2 LCV-DIEKRLP---------DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRK--   66 (214)
T ss_pred             cee-eeeEecC---------Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc--
Confidence            455 9999995         3444  99999999 9999999999999999999999999999999999976431100  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCC----CHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGI----DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~  183 (348)
                         ...  ....++.++|+++....+...+..+.+ +.....    ..+++.++++.+++.  .++++.+||||||||++
T Consensus        67 ---~~~--~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  141 (214)
T cd03297          67 ---KIN--LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVA  141 (214)
T ss_pred             ---hhh--hhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHH
Confidence               000  001234566665554444444444332 221111    123456788888886  36788999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++..+||++++|++|++++.|
T Consensus       142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         142 LARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999999997666899999999999999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-44  Score=329.68  Aligned_cols=217  Identities=17%  Similarity=0.210  Sum_probs=170.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-----CceEEEcCeec
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-----PEMVKVLGRSA  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-----~G~i~i~G~~~  103 (348)
                      ++|+++||+++|+         ++.+|+++||+|++|++++|+||||||||||+++|+|+++|+     +|+|.++|..+
T Consensus         3 ~~l~~~~l~~~~~---------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~   73 (251)
T PRK14249          3 PKIKIRGVNFFYH---------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI   73 (251)
T ss_pred             ceEEEEEEEEEEC---------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEc
Confidence            5799999999994         357999999999999999999999999999999999999887     59999999764


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCCC-----HHHHHHHHHHcCCC------cCc
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGID-----PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~-----~~~~~~~l~~l~l~------~~~  169 (348)
                      .....         ....+++.++|+++...++.. +.. ++.+..  .+..     .+...++++.+++.      .++
T Consensus        74 ~~~~~---------~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~  143 (251)
T PRK14249         74 YSPNL---------DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHK  143 (251)
T ss_pred             ccccc---------ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhC
Confidence            21100         001233456666555443332 333 332221  1111     12344556666652      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      .+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++||+++++..+||++++|++
T Consensus       144 ~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~  221 (251)
T PRK14249        144 SGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLT  221 (251)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeC
Confidence            789999999999999999999999999999999999999999999999984 3 78999999999999999999999999


Q ss_pred             CEEeeecChhHHHHhhh
Q 018938          250 GKLQLAMPMDKVKEASK  266 (348)
Q Consensus       250 G~i~~~g~~~~~~~~~~  266 (348)
                      |++++.++++++...+.
T Consensus       222 G~i~~~~~~~~~~~~~~  238 (251)
T PRK14249        222 GDLVEYGRTGEIFSRPR  238 (251)
T ss_pred             CeEEEeCCHHHHHhCCC
Confidence            99999999988866543

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-44  Score=329.99  Aligned_cols=214  Identities=19%  Similarity=0.240  Sum_probs=168.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~~  104 (348)
                      .|+++||++.|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.
T Consensus         3 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   73 (250)
T PRK14240          3 KISVKDLDLFYG---------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY   73 (250)
T ss_pred             eEEEEEEEEEEC---------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            589999999995         35799999999999999999999999999999999998763     6899999998653


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC------cCcc
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID------LSWR  170 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~------~~~~  170 (348)
                      ....         ....++..++|+++....+. .+..+ +.+..  .+. .    .+.+.++++.+++.      .+++
T Consensus        74 ~~~~---------~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~  143 (250)
T PRK14240         74 KSDI---------DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKS  143 (250)
T ss_pred             cccc---------chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcC
Confidence            2100         00112344566555433333 33333 22211  111 1    23345667777652      2567


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++|||++++..+||++++|++|
T Consensus       144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G  221 (250)
T PRK14240        144 ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNG  221 (250)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECC
Confidence            89999999999999999999999999999999999999999999999984 3 789999999999999999999999999


Q ss_pred             EEeeecChhHHHHh
Q 018938          251 KLQLAMPMDKVKEA  264 (348)
Q Consensus       251 ~i~~~g~~~~~~~~  264 (348)
                      +++..++++++...
T Consensus       222 ~i~~~~~~~~~~~~  235 (250)
T PRK14240        222 EIVEFGDTVDLFTN  235 (250)
T ss_pred             EEEEeCCHHHHHhC
Confidence            99999998887654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=3e-44  Score=328.08  Aligned_cols=212  Identities=24%  Similarity=0.329  Sum_probs=161.8

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|+++.|++.      +++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....   
T Consensus         1 l~i~~l~~~~~~~------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~---   71 (238)
T cd03249           1 IEFKNVSFRYPSR------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLN---   71 (238)
T ss_pred             CeEEEEEEecCCC------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcC---
Confidence            4689999999531      1246999999999999999999999999999999999999999999999997542110   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHH---------Hc--CCC--cCccCCCCCH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIK---------VL--DID--LSWRMHKVSD  176 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~---------~l--~l~--~~~~~~~LSg  176 (348)
                              ....+..++|.++...++. .+..+.+ +...........+.++         .+  ++.  .++.+.+|||
T Consensus        72 --------~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~  142 (238)
T cd03249          72 --------LRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSG  142 (238)
T ss_pred             --------HHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCH
Confidence                    0112334556554433332 2333332 2221112222222222         22  222  3456789999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.  .|.|||++||+++++. +||++++|++|++++.+
T Consensus       143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~  219 (238)
T cd03249         143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQG  219 (238)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999985  4899999999999997 89999999999999999


Q ss_pred             ChhHHHH
Q 018938          257 PMDKVKE  263 (348)
Q Consensus       257 ~~~~~~~  263 (348)
                      +.+++..
T Consensus       220 ~~~~~~~  226 (238)
T cd03249         220 THDELMA  226 (238)
T ss_pred             CHHHHhh
Confidence            8877654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-44  Score=330.11  Aligned_cols=213  Identities=18%  Similarity=0.251  Sum_probs=168.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~~  104 (348)
                      +|+++|+++.|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.
T Consensus         3 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~   73 (249)
T PRK14253          3 KFNIENLDLFYG---------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY   73 (249)
T ss_pred             eEEEeccEEEEC---------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcc
Confidence            689999999994         36799999999999999999999999999999999999885     5899999997542


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCC-H----HHHHHHHHHcCCC------cCcc
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGID-P----QRRAELIKVLDID------LSWR  170 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-~----~~~~~~l~~l~l~------~~~~  170 (348)
                      ....          ...+++.++|++++..++. .+..+ +.+..  .+.. .    +++.++++.+++.      .+.+
T Consensus        74 ~~~~----------~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  142 (249)
T PRK14253         74 GNID----------VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH  142 (249)
T ss_pred             cccc----------hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcC
Confidence            1100          0123345666655544333 33333 22221  1111 1    2334566667652      2467


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +.+|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||++||+++++..+||++++|++|
T Consensus       143 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G  220 (249)
T PRK14253        143 AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMG  220 (249)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECC
Confidence            899999999999999999999999999999999999999999999999854  589999999999999999999999999


Q ss_pred             EEeeecChhHHHHh
Q 018938          251 KLQLAMPMDKVKEA  264 (348)
Q Consensus       251 ~i~~~g~~~~~~~~  264 (348)
                      +++..|+++++...
T Consensus       221 ~i~~~g~~~~~~~~  234 (249)
T PRK14253        221 ELVEHDDTQVIFSN  234 (249)
T ss_pred             EEEEeCCHHHHHcC
Confidence            99999998877543

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=1.7e-44  Score=329.63  Aligned_cols=195  Identities=27%  Similarity=0.464  Sum_probs=154.1

Q ss_pred             CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938           50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA  129 (348)
Q Consensus        50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (348)
                      +.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....            ..+++.++|.
T Consensus        32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~------------~~~~~~i~~~   99 (236)
T cd03267          32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR------------KKFLRRIGVV   99 (236)
T ss_pred             CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc------------hhhcccEEEE
Confidence            3467999999999999999999999999999999999999999999999997532110            0122334444


Q ss_pred             C-CCccccccchHHHHH-h--ccCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeec
Q 018938          130 G-FEVPIQMDVSAEKMI-F--GVAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDE  199 (348)
Q Consensus       130 ~-~~~~~~~~~~~~~~~-~--~~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDE  199 (348)
                      + +........+..+.+ +  ...+...    +++.++++.+++.  .++++.+||||||||++|||||+.+|++|||||
T Consensus       100 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE  179 (236)
T cd03267         100 FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE  179 (236)
T ss_pred             cCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            3 222222333443322 1  1112221    2345678888875  367789999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          200 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       200 PtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||+|||+.++..+.++|+++.++.+.|||++||+++++..+||++++|++|++++.|
T Consensus       180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence            999999999999999999987666899999999999999999999999999997653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-44  Score=330.46  Aligned_cols=215  Identities=23%  Similarity=0.302  Sum_probs=169.0

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeec
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSA  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~  103 (348)
                      ++|+++|+++.|+         +.++|+++||+|++||+++|+||||||||||+++|+|++.|     ++|+|.++|.++
T Consensus         2 ~~l~~~~l~~~~~---------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~   72 (250)
T PRK14262          2 PIIEIENFSAYYG---------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI   72 (250)
T ss_pred             ceEEEEeeEEEeC---------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence            3799999999994         35799999999999999999999999999999999999874     789999999764


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCC-C----HHHHHHHHHHcCCC------cCc
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGI-D----PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~----~~~~~~~l~~l~l~------~~~  169 (348)
                      .....         ....+++.++|++++...+. .+..+ +.+.  .... .    .+.+.++++.+++.      .++
T Consensus        73 ~~~~~---------~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  142 (250)
T PRK14262         73 YDPQL---------DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNK  142 (250)
T ss_pred             ccchh---------hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhC
Confidence            21100         00112344566555433333 33333 2221  1111 1    12345567777763      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ++.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++
T Consensus       143 ~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~l~~  220 (250)
T PRK14262        143 PGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNIGQAIRIADYIAFMYR  220 (250)
T ss_pred             ChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence            789999999999999999999999999999999999999999999999985 3 68999999999999999999999999


Q ss_pred             CEEeeecChhHHHHh
Q 018938          250 GKLQLAMPMDKVKEA  264 (348)
Q Consensus       250 G~i~~~g~~~~~~~~  264 (348)
                      |+++..|+++++.+.
T Consensus       221 G~i~~~g~~~~~~~~  235 (250)
T PRK14262        221 GELIEYGPTREIVER  235 (250)
T ss_pred             CEEEEecCHHHHHhC
Confidence            999999998887653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-44  Score=333.59  Aligned_cols=220  Identities=19%  Similarity=0.269  Sum_probs=172.8

Q ss_pred             cCCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEE
Q 018938           24 MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKV   98 (348)
Q Consensus        24 m~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i   98 (348)
                      ++...++|+++|++++|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+
T Consensus        19 ~~~~~~~l~~~nl~~~~~---------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i   89 (272)
T PRK14236         19 LSDEQTALEVRNLNLFYG---------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL   89 (272)
T ss_pred             cCCCCcEEEEEEEEEEEC---------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence            445567899999999994         35799999999999999999999999999999999999873     7999999


Q ss_pred             cCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCC-C----HHHHHHHHHHcCCC----
Q 018938           99 LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGI-D----PQRRAELIKVLDID----  166 (348)
Q Consensus        99 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~----~~~~~~~l~~l~l~----  166 (348)
                      +|.++.....         ....++..++|.++....+.. +..+ +.+.  ..+. .    .+++.++++.+++.    
T Consensus        90 ~g~~i~~~~~---------~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  159 (272)
T PRK14236         90 DGQNIYDKKV---------DVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK  159 (272)
T ss_pred             CCEECccccc---------CHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH
Confidence            9986532100         001223445565554333332 3333 2222  1111 1    12355677777763    


Q ss_pred             --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                        .++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+  +.|||++||+++++..+||++
T Consensus       160 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i  237 (272)
T PRK14236        160 DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYT  237 (272)
T ss_pred             HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEE
Confidence              3567899999999999999999999999999999999999999999999999863  689999999999999999999


Q ss_pred             EEEcCCEEeeecChhHHHHh
Q 018938          245 VYVAHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       245 ~~l~~G~i~~~g~~~~~~~~  264 (348)
                      ++|++|+++..|+++++...
T Consensus       238 ~~l~~G~i~~~g~~~~~~~~  257 (272)
T PRK14236        238 AFMYMGKLVEYGDTDTLFTS  257 (272)
T ss_pred             EEEECCEEEecCCHHHHhcC
Confidence            99999999999998887654

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=2.6e-44  Score=326.60  Aligned_cols=211  Identities=20%  Similarity=0.291  Sum_probs=162.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|++++|++        .+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+....  
T Consensus         2 ~l~~~~l~~~~~~--------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--   71 (229)
T cd03254           2 EIEFENVNFSYDE--------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS--   71 (229)
T ss_pred             eEEEEEEEEecCC--------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC--
Confidence            3789999999952        346999999999999999999999999999999999999999999999997542110  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHHcC-----------CC--cCccCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKVLD-----------ID--LSWRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~-----------l~--~~~~~~~LS  175 (348)
                               ...+++.++|.++...++.. +..+. .+...........+.++.++           +.  .++++.+||
T Consensus        72 ---------~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS  141 (229)
T cd03254          72 ---------RKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLS  141 (229)
T ss_pred             ---------HHHHhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCC
Confidence                     01223445666554333332 33333 22211122233333333332           21  234578999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++||+++++. .||++++|++|++++.
T Consensus       142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~  218 (229)
T cd03254         142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLDDGKIIEE  218 (229)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEeCCeEEEe
Confidence            999999999999999999999999999999999999999999984 3 899999999999996 4999999999999998


Q ss_pred             cChhHHHH
Q 018938          256 MPMDKVKE  263 (348)
Q Consensus       256 g~~~~~~~  263 (348)
                      ++.+++..
T Consensus       219 ~~~~~~~~  226 (229)
T cd03254         219 GTHDELLA  226 (229)
T ss_pred             CCHHHHHh
Confidence            88776643

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-44  Score=331.56  Aligned_cols=224  Identities=19%  Similarity=0.264  Sum_probs=177.6

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++|++++|+         ++.+|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.++|...+.+.
T Consensus         8 ~~~i~~~~~~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~   78 (257)
T PRK14246          8 EDVFNISRLYLYIN---------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK   78 (257)
T ss_pred             hhheeeeeEEEecC---------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCc
Confidence            46899999999994         467999999999999999999999999999999999999999999998887654332


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC-CH----HHHHHHHHHcCCC------cCccCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI-DP----QRRAELIKVLDID------LSWRMHK  173 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~~----~~~~~~l~~l~l~------~~~~~~~  173 (348)
                      ....   .  ....++..++|.+++...+...+..+.+ +..  .+. ..    .++.++++.+++.      .++.+..
T Consensus        79 ~~~~---~--~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  153 (257)
T PRK14246         79 DIFQ---I--DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQ  153 (257)
T ss_pred             cccc---C--CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCccc
Confidence            2110   0  0112345567776655444444444332 221  111 11    2345677888874      2567899


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      ||+|||||++|||||+.+|++|||||||+|||+.++..+.++|.+++ + +.|||++||+++++..+||++++|++|+++
T Consensus       154 LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~  231 (257)
T PRK14246        154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNPQQVARVADYVAFLYNGELV  231 (257)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999985 3 689999999999999999999999999999


Q ss_pred             eecChhHHHHhhhh
Q 018938          254 LAMPMDKVKEASKL  267 (348)
Q Consensus       254 ~~g~~~~~~~~~~~  267 (348)
                      ..|+.+++.+.+..
T Consensus       232 ~~g~~~~~~~~~~~  245 (257)
T PRK14246        232 EWGSSNEIFTSPKN  245 (257)
T ss_pred             EECCHHHHHhCCCc
Confidence            99999988765443

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-44  Score=364.28  Aligned_cols=215  Identities=24%  Similarity=0.340  Sum_probs=174.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC--CCceEEEcCeecccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV--EPEMVKVLGRSAFHD  106 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~--~~G~i~i~G~~~~~~  106 (348)
                      ++|+++||+++|+         ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|  ++|+|.++|.++...
T Consensus         4 ~~l~~~nl~~~~~---------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~   74 (506)
T PRK13549          4 YLLEMKNITKTFG---------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS   74 (506)
T ss_pred             ceEEEeeeEEEeC---------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC
Confidence            5799999999994         36799999999999999999999999999999999999986  799999999865211


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----C-CC----HHHHHHHHHHcCCC--cCccCCCC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----G-ID----PQRRAELIKVLDID--LSWRMHKV  174 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-~~----~~~~~~~l~~l~l~--~~~~~~~L  174 (348)
                      ..          ....++.++|++++...+..+++.+.+ +...    . .+    .+++.++++.+++.  .++++.+|
T Consensus        75 ~~----------~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  144 (506)
T PRK13549         75 NI----------RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNL  144 (506)
T ss_pred             CH----------HHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhC
Confidence            00          001123466665554444445554433 2211    1 12    13456788888885  36788999


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||||||||+|||||+.+|++|||||||++||+.++..++++|.++.+ .|.|||+||||++++..+||++++|++|+++.
T Consensus       145 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~  223 (506)
T PRK13549        145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIG  223 (506)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence            99999999999999999999999999999999999999999999864 58999999999999999999999999999999


Q ss_pred             ecChhHHHH
Q 018938          255 AMPMDKVKE  263 (348)
Q Consensus       255 ~g~~~~~~~  263 (348)
                      .++++++..
T Consensus       224 ~~~~~~~~~  232 (506)
T PRK13549        224 TRPAAGMTE  232 (506)
T ss_pred             ecccccCCH
Confidence            998877643

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=1.9e-44  Score=315.98  Aligned_cols=177  Identities=26%  Similarity=0.469  Sum_probs=148.9

Q ss_pred             EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938           32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS  111 (348)
Q Consensus        32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~  111 (348)
                      +++|++++|+         ...+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    
T Consensus         1 ~~~~l~~~~~---------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~----   67 (180)
T cd03214           1 EVENLSVGYG---------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS----   67 (180)
T ss_pred             CeeEEEEEEC---------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC----
Confidence            4789999994         357999999999999999999999999999999999999999999999997542110    


Q ss_pred             cCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHc
Q 018938          112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLL  189 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~  189 (348)
                             ...++..++|.++                           +++.+++.  .++.+.+|||||+||++|||||+
T Consensus        68 -------~~~~~~~i~~~~q---------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~  113 (180)
T cd03214          68 -------PKELARKIAYVPQ---------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALA  113 (180)
T ss_pred             -------HHHHHHHHhHHHH---------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence                   0011222333211                           55556654  35678999999999999999999


Q ss_pred             cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      .+|++|||||||++||+.++..+.+.|.+++++.+.|||++||+++++..+||++++|++|+++..
T Consensus       114 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~  179 (180)
T cd03214         114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ  179 (180)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence            999999999999999999999999999998755488999999999999999999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.9e-45  Score=305.35  Aligned_cols=214  Identities=21%  Similarity=0.280  Sum_probs=177.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++++++..+...     +...+|++|+|.|++||.++||||||||||||+-+++|+..|++|+|.+.|++...-..
T Consensus         5 ~ii~~~~l~ktvg~~~-----~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldE   79 (228)
T COG4181           5 NIIEVHHLSKTVGQGE-----GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDE   79 (228)
T ss_pred             ceeehhhhhhhhcCCC-----cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCH
Confidence            3799999999986432     46789999999999999999999999999999999999999999999999987543211


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-c--cCC--C--CHHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-G--VAG--I--DPQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~--~--~~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                      .    ...   ....+.++|++|++.+.++++..++.. .  +.+  .  ....+.++++.+|+.  +..+|.+||||||
T Consensus        80 d----~rA---~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQ  152 (228)
T COG4181          80 D----ARA---ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQ  152 (228)
T ss_pred             H----HHH---HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHH
Confidence            0    000   012356778877777777777665432 1  122  1  134567889999986  5789999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||+|||||+..|++||.||||-+||..+-.++.++|..++++.|.|+|+||||...+.+ |+|++.|.+|+++.+
T Consensus       153 QRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~  227 (228)
T COG4181         153 QRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED  227 (228)
T ss_pred             HHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence            999999999999999999999999999999999999999999999999999999998876 999999999999753

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-44  Score=337.01  Aligned_cols=218  Identities=19%  Similarity=0.224  Sum_probs=170.8

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCe
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGR  101 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~  101 (348)
                      ..++|+++||+++|+         +..+|+|+||+|++||+++|+||||||||||+++|+|+..     |++|+|.++|.
T Consensus        36 ~~~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~  106 (286)
T PRK14275         36 GKPHVVAKNFSIYYG---------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE  106 (286)
T ss_pred             CceEEEEeeeEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCE
Confidence            456899999999994         3569999999999999999999999999999999999854     48999999997


Q ss_pred             eccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCC-C----HHHHHHHHHHcCCC------c
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGI-D----PQRRAELIKVLDID------L  167 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~----~~~~~~~l~~l~l~------~  167 (348)
                      ++.....     .    ...+++.++|+++...++.. +..+ +.+..  ... .    .+.+.++++.+++.      .
T Consensus       107 ~i~~~~~-----~----~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~  176 (286)
T PRK14275        107 DIYGKFT-----D----EVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRL  176 (286)
T ss_pred             Ehhhccc-----c----hHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHh
Confidence            6421100     0    00123456666555433332 3333 22221  111 1    12345667777752      3


Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||++|||++++..+||++++|
T Consensus       177 ~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L  254 (286)
T PRK14275        177 DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFF  254 (286)
T ss_pred             hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEE
Confidence            567899999999999999999999999999999999999999999999999853  589999999999999999999999


Q ss_pred             cCCEEeeecChhHHHHhh
Q 018938          248 AHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       248 ~~G~i~~~g~~~~~~~~~  265 (348)
                      ++|+++..|+++++.+.+
T Consensus       255 ~~G~i~~~g~~~~~~~~~  272 (286)
T PRK14275        255 YEGVLVEHAPTAQLFTNP  272 (286)
T ss_pred             ECCEEEEeCCHHHHHhCC
Confidence            999999999988876543

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-44  Score=335.17  Aligned_cols=217  Identities=19%  Similarity=0.290  Sum_probs=170.0

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCe
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGR  101 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~  101 (348)
                      ..++|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.
T Consensus        36 ~~~~l~i~~l~~~~~---------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~  106 (285)
T PRK14254         36 GETVIEARDLNVFYG---------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK  106 (285)
T ss_pred             CCceEEEEEEEEEEC---------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence            456899999999994         3579999999999999999999999999999999999986     58999999998


Q ss_pred             eccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCCC---HHHHHHHHHHcCCC------cCc
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGID---PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~---~~~~~~~l~~l~l~------~~~  169 (348)
                      .+.... ..        ...+++.++|+++...++.. +..+ +.+.  ..+..   ..++.++++.+++.      .++
T Consensus       107 ~i~~~~-~~--------~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~  176 (285)
T PRK14254        107 NVYDAD-VD--------PVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDS  176 (285)
T ss_pred             Eccccc-cc--------hHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhC
Confidence            643210 00        01123345555544333222 3332 2221  11111   23456778888773      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE-EEc
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV-YVA  248 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~-~l~  248 (348)
                      ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++  +.|||++|||++++..+|||++ +|+
T Consensus       177 ~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~  254 (285)
T PRK14254        177 SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLT  254 (285)
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEee
Confidence            7899999999999999999999999999999999999999999999999864  4799999999999999999975 679


Q ss_pred             CCEEeeecChhHHHHh
Q 018938          249 HGKLQLAMPMDKVKEA  264 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~~  264 (348)
                      +|++++.++++++...
T Consensus       255 ~G~i~~~g~~~~~~~~  270 (285)
T PRK14254        255 GGELVEFDDTDKIFEN  270 (285)
T ss_pred             CCEEEEeCCHHHHHhC
Confidence            9999999998887653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-44  Score=333.26  Aligned_cols=219  Identities=20%  Similarity=0.227  Sum_probs=170.6

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCe
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGR  101 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~  101 (348)
                      ..++|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|++.|     ++|+|.++|.
T Consensus        17 ~~~~l~~~nl~~~~~---------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~   87 (274)
T PRK14265         17 DHSVFEVEGVKVFYG---------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDR   87 (274)
T ss_pred             CCceEEEeeEEEEeC---------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCE
Confidence            456899999999994         35799999999999999999999999999999999999763     5899999997


Q ss_pred             eccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCCC---HHHHHHHHHHcCCC------cCc
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGID---PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~~~~l~~l~l~------~~~  169 (348)
                      ++.....         ....++..++|++++..++.. +.. ++.+..  ....   .+...++++.+++.      .++
T Consensus        88 ~l~~~~~---------~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~  157 (274)
T PRK14265         88 NIYDSQI---------NSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKE  157 (274)
T ss_pred             ecccccc---------hhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcC
Confidence            6432100         001223456666555433322 333 332211  1111   12334566666652      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc-
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-  248 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~-  248 (348)
                      ++.+|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++|||++++..+||++++|+ 
T Consensus       158 ~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~  235 (274)
T PRK14265        158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNMQQASRVADWTAFFNT  235 (274)
T ss_pred             CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEec
Confidence            789999999999999999999999999999999999999999999999985 3 6899999999999999999999997 


Q ss_pred             --------CCEEeeecChhHHHHhhh
Q 018938          249 --------HGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       249 --------~G~i~~~g~~~~~~~~~~  266 (348)
                              +|++++.|+++++...+.
T Consensus       236 ~~~~~~~~~G~~~~~g~~~~~~~~~~  261 (274)
T PRK14265        236 EIDEYGKRRGKLVEFSPTEQMFGSPQ  261 (274)
T ss_pred             ccccccccCceEEEeCCHHHHHhCCC
Confidence                    899999999999876443

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-44  Score=335.18  Aligned_cols=210  Identities=23%  Similarity=0.368  Sum_probs=165.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|++        ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....  
T Consensus         6 ~l~~~~l~~~~~~--------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~--   75 (272)
T PRK15056          6 GIVVNDVTVTWRN--------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQAL--   75 (272)
T ss_pred             eEEEEeEEEEecC--------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhh--
Confidence            6999999999952        357999999999999999999999999999999999999999999999997642100  


Q ss_pred             cccCcccccchhhhhhhhhcCCCcccc--ccchHHHHHh-c------cCC-C---CHHHHHHHHHHcCCC--cCccCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQ--MDVSAEKMIF-G------VAG-I---DPQRRAELIKVLDID--LSWRMHKV  174 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~------~~~-~---~~~~~~~~l~~l~l~--~~~~~~~L  174 (348)
                       .           +..++|++++....  ...+..+.+. +      ... .   ..+++.++++.+++.  .++++.+|
T Consensus        76 -~-----------~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L  143 (272)
T PRK15056         76 -Q-----------KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGEL  143 (272)
T ss_pred             -c-----------cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence             0           01233333322110  1112222211 0      000 0   123456678888885  46789999


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      |||||||++|||||+.+|++|||||||+|||+.++..+.++|.++++ .|.|||++|||++++..+||+++++ +|+++.
T Consensus       144 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~  221 (272)
T PRK15056        144 SGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA  221 (272)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence            99999999999999999999999999999999999999999999865 4899999999999999999999877 899999


Q ss_pred             ecChhHHHH
Q 018938          255 AMPMDKVKE  263 (348)
Q Consensus       255 ~g~~~~~~~  263 (348)
                      .|+++++..
T Consensus       222 ~g~~~~~~~  230 (272)
T PRK15056        222 SGPTETTFT  230 (272)
T ss_pred             ecCHHhccC
Confidence            999887653

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-44  Score=332.30  Aligned_cols=218  Identities=18%  Similarity=0.210  Sum_probs=169.8

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~  102 (348)
                      .++|+++||+++|+         ..++|+|+||+|++||+++|+||||||||||+++|+|++.     |++|+|.++|.+
T Consensus         8 ~~~l~i~~v~~~~~---------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~   78 (264)
T PRK14243          8 ETVLRTENLNVYYG---------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKN   78 (264)
T ss_pred             ceEEEEeeeEEEEC---------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEE
Confidence            35799999999994         3579999999999999999999999999999999999875     378999999976


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCCC---HHHHHHHHHHcCCC------cCcc
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGID---PQRRAELIKVLDID------LSWR  170 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~~~~l~~l~l~------~~~~  170 (348)
                      +.... .        ....+++.++|+++....+.. +.. ++.+..  ....   .+++.++++.+++.      .++.
T Consensus        79 i~~~~-~--------~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~  148 (264)
T PRK14243         79 LYAPD-V--------DPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQS  148 (264)
T ss_pred             ccccc-c--------ChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCC
Confidence            42110 0        001223446666554333322 333 332221  1111   12344556666652      3567


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc--
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA--  248 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~--  248 (348)
                      +.+||||||||++|||||+.+|++|||||||+|||+.++..++++|.++.+  +.|||++||+++++..+||++++|+  
T Consensus       149 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~  226 (264)
T PRK14243        149 GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVE  226 (264)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecc
Confidence            899999999999999999999999999999999999999999999999864  5799999999999999999999998  


Q ss_pred             -------CCEEeeecChhHHHHhhh
Q 018938          249 -------HGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       249 -------~G~i~~~g~~~~~~~~~~  266 (348)
                             +|++++.|+++++...+.
T Consensus       227 ~~~~~~~~g~i~~~~~~~~~~~~~~  251 (264)
T PRK14243        227 LTEGGGRYGYLVEFDRTEKIFNSPQ  251 (264)
T ss_pred             cccccccCceEEEeCCHHHHHhCCC
Confidence                   899999999999876443

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=5.4e-44  Score=325.51  Aligned_cols=212  Identities=28%  Similarity=0.412  Sum_probs=163.6

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|++       .+.++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|..+....   
T Consensus         1 i~~~~l~~~~~~-------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---   70 (234)
T cd03251           1 VEFKNVTFRYPG-------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT---   70 (234)
T ss_pred             CEEEEEEEEeCC-------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC---
Confidence            478999999953       1237999999999999999999999999999999999999999999999997542110   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHH---------HHHHHHc--CCC--cCccCCCCCH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRR---------AELIKVL--DID--LSWRMHKVSD  176 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~LSg  176 (348)
                              ...+++.++|.++...++. .+..+.+ +..........         .++++.+  ++.  .+.++.+|||
T Consensus        71 --------~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~  141 (234)
T cd03251          71 --------LASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSG  141 (234)
T ss_pred             --------HHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCH
Confidence                    0122344566655433332 3443332 22222222221         2333333  332  3456889999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++|||++++.. ||++++|++|+++..+
T Consensus       142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~  218 (234)
T cd03251         142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERG  218 (234)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeC
Confidence            99999999999999999999999999999999999999999985 3 7899999999999976 9999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +++++...
T Consensus       219 ~~~~~~~~  226 (234)
T cd03251         219 THEELLAQ  226 (234)
T ss_pred             CHHHHHHc
Confidence            88877543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-44  Score=332.65  Aligned_cols=218  Identities=19%  Similarity=0.231  Sum_probs=169.7

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCe
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGR  101 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~  101 (348)
                      ..++|+++||+++|+         +.++|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|.
T Consensus        21 ~~~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~   91 (271)
T PRK14238         21 KKVVFDTQNLNLWYG---------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ   91 (271)
T ss_pred             CceEEEEeeeEEEEC---------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence            346899999999994         3579999999999999999999999999999999999987     68999999997


Q ss_pred             eccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCC-CH----HHHHHHHHHcCC----C--c
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGI-DP----QRRAELIKVLDI----D--L  167 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~----~~~~~~l~~l~l----~--~  167 (348)
                      ++.....         ....+++.++|+++...++.. +.. ++.+..  ... ..    ..+.++++.+++    .  .
T Consensus        92 ~~~~~~~---------~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~  161 (271)
T PRK14238         92 NIFDKSY---------SVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL  161 (271)
T ss_pred             Ecccccc---------cHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH
Confidence            6532100         001223456666555433332 333 332221  111 11    123444555542    1  3


Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||++|||++++..+||++++|
T Consensus       162 ~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l  239 (271)
T PRK14238        162 HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFF  239 (271)
T ss_pred             hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEE
Confidence            567899999999999999999999999999999999999999999999999853  689999999999999999999999


Q ss_pred             cCCEEeeecChhHHHHhh
Q 018938          248 AHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       248 ~~G~i~~~g~~~~~~~~~  265 (348)
                      ++|+++..|+++++...+
T Consensus       240 ~~G~i~~~g~~~~~~~~~  257 (271)
T PRK14238        240 LNGYVNEYDDTDKIFSNP  257 (271)
T ss_pred             ECCEEEEeCCHHHHHcCC
Confidence            999999999998886543

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=4.6e-44  Score=329.60  Aligned_cols=216  Identities=23%  Similarity=0.289  Sum_probs=165.7

Q ss_pred             cCCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCe
Q 018938           24 MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGR  101 (348)
Q Consensus        24 m~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~  101 (348)
                      |....++|+++||++.|+         ++.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|.++|.
T Consensus         1 ~~~~~~~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~   71 (252)
T CHL00131          1 MNKNKPILEIKNLHASVN---------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGE   71 (252)
T ss_pred             CCCCCceEEEEeEEEEeC---------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCE
Confidence            344556899999999994         35799999999999999999999999999999999998  5789999999997


Q ss_pred             eccccccccccCcccccchhhhh-hhhhcCCCccccccchHHHHH-hcc---------CCCC----HHHHHHHHHHcCCC
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRR-EVAFAGFEVPIQMDVSAEKMI-FGV---------AGID----PQRRAELIKVLDID  166 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~----~~~~~~~l~~l~l~  166 (348)
                      ++......           ...+ .+++.++....+...+..+.. +..         ....    ..++.++++.+++.
T Consensus        72 ~~~~~~~~-----------~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  140 (252)
T CHL00131         72 SILDLEPE-----------ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD  140 (252)
T ss_pred             EcccCChh-----------hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCc
Confidence            64321100           0011 123333332222222322221 100         0011    12345678888885


Q ss_pred             ---cCccCC-CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-C
Q 018938          167 ---LSWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-P  241 (348)
Q Consensus       167 ---~~~~~~-~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~  241 (348)
                         .++.+. .|||||+|||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.|||++|||++++..+ |
T Consensus       141 ~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~  219 (252)
T CHL00131        141 PSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKP  219 (252)
T ss_pred             hhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhC
Confidence               256676 5999999999999999999999999999999999999999999999874 589999999999999887 9


Q ss_pred             CEEEEEcCCEEeeecChhH
Q 018938          242 SHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       242 d~v~~l~~G~i~~~g~~~~  260 (348)
                      |++++|++|++++.|+++.
T Consensus       220 d~i~~l~~G~i~~~~~~~~  238 (252)
T CHL00131        220 DYVHVMQNGKIIKTGDAEL  238 (252)
T ss_pred             CEEEEEeCCEEEEecChhh
Confidence            9999999999999998773

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.8e-44  Score=332.78  Aligned_cols=217  Identities=22%  Similarity=0.257  Sum_probs=171.9

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~  102 (348)
                      .++|+++||+++|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|..
T Consensus        19 ~~~l~i~nl~~~~~---------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~   89 (276)
T PRK14271         19 APAMAAVNLTLGFA---------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRS   89 (276)
T ss_pred             CcEEEEeeEEEEEC---------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEE
Confidence            46899999999994         36799999999999999999999999999999999999885     69999999976


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CC-CCH----HHHHHHHHHcCCC------cC
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AG-IDP----QRRAELIKVLDID------LS  168 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~~~----~~~~~~l~~l~l~------~~  168 (348)
                      +.....          ...++..++|++++...+. .+..+ +.+..  .. ...    ....++++.+++.      .+
T Consensus        90 i~~~~~----------~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~  158 (276)
T PRK14271         90 IFNYRD----------VLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLS  158 (276)
T ss_pred             ccccch----------hHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhh
Confidence            431100          0123345566655443333 33333 32221  11 122    1234567777774      24


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|+++.+  +.|||++|||++++..+||++++|+
T Consensus       159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~  236 (276)
T PRK14271        159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFF  236 (276)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            56899999999999999999999999999999999999999999999999864  4899999999999999999999999


Q ss_pred             CCEEeeecChhHHHHhhh
Q 018938          249 HGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~~~~  266 (348)
                      +|+++..++++++.+.+.
T Consensus       237 ~G~i~~~g~~~~~~~~~~  254 (276)
T PRK14271        237 DGRLVEEGPTEQLFSSPK  254 (276)
T ss_pred             CCEEEEeCCHHHHHhCcC
Confidence            999999999998876543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-44  Score=370.91  Aligned_cols=233  Identities=18%  Similarity=0.234  Sum_probs=178.6

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccc-c
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH-D  106 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~-~  106 (348)
                      +++|+++||+++|+...     +..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..+.. +
T Consensus        10 ~~~l~v~~l~~~y~~~~-----~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~   84 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQ-----QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS   84 (623)
T ss_pred             CceEEEeceEEEecCCC-----CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccc
Confidence            46899999999995310     13579999999999999999999999999999999999999999999998864311 0


Q ss_pred             ccccccCccc-ccchhhh-hhhhhcCCCc--cccccchHHHH-Hhcc---CCCCH----HHHHHHHHHcCCC-----cCc
Q 018938          107 TALTSSGDLS-YLGGEWR-REVAFAGFEV--PIQMDVSAEKM-IFGV---AGIDP----QRRAELIKVLDID-----LSW  169 (348)
Q Consensus       107 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~-~~~~---~~~~~----~~~~~~l~~l~l~-----~~~  169 (348)
                      .......... .....++ ..++|++|+.  .++..+++.+. .+..   .+...    +++.++++.+++.     .++
T Consensus        85 ~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~  164 (623)
T PRK10261         85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR  164 (623)
T ss_pred             ccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence            0000000000 0000111 3467765553  23334444443 2221   12222    3566788899984     367


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ++++|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|+|||+||||++++..+||||++|++
T Consensus       165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~  244 (623)
T PRK10261        165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ  244 (623)
T ss_pred             CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence            89999999999999999999999999999999999999999999999999876699999999999999999999999999


Q ss_pred             CEEeeecChhHHHHhh
Q 018938          250 GKLQLAMPMDKVKEAS  265 (348)
Q Consensus       250 G~i~~~g~~~~~~~~~  265 (348)
                      |++++.|+++++...+
T Consensus       245 G~i~~~g~~~~~~~~~  260 (623)
T PRK10261        245 GEAVETGSVEQIFHAP  260 (623)
T ss_pred             CeecccCCHHHhhcCC
Confidence            9999999998886543

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-44  Score=329.46  Aligned_cols=215  Identities=22%  Similarity=0.253  Sum_probs=167.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-----CceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-----PEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-----~G~i~i~G~~~~  104 (348)
                      +|+++||+++|+         ++++|+++||+|++||+++|+||||||||||+|+|+|+++|+     +|+|.++|.++.
T Consensus         4 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~   74 (252)
T PRK14272          4 LLSAQDVNIYYG---------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY   74 (252)
T ss_pred             EEEEeeeEEEEC---------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcc
Confidence            689999999994         357999999999999999999999999999999999998774     799999997643


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCC-CH----HHHHHHHHHcCCC------cCcc
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGI-DP----QRRAELIKVLDID------LSWR  170 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~~----~~~~~~l~~l~l~------~~~~  170 (348)
                      ....         ....++..++|+++....+...+..+.+ +..  ... ..    +...++++.+++.      .+++
T Consensus        75 ~~~~---------~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~  145 (252)
T PRK14272         75 GPRV---------DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTP  145 (252)
T ss_pred             cCcc---------CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC
Confidence            2100         0011234456665554444333443322 211  111 11    1233445555531      3567


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +.+|||||+||++|||||+.+|++|||||||+|||+.++..+.++|++++ + +.|||++||+++++..+||++++|++|
T Consensus       146 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G  223 (252)
T PRK14272        146 ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVG  223 (252)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence            89999999999999999999999999999999999999999999999985 3 689999999999999999999999999


Q ss_pred             EEeeecChhHHHHh
Q 018938          251 KLQLAMPMDKVKEA  264 (348)
Q Consensus       251 ~i~~~g~~~~~~~~  264 (348)
                      ++++.|+++++...
T Consensus       224 ~i~~~~~~~~~~~~  237 (252)
T PRK14272        224 DLVEHGPTDQLFTN  237 (252)
T ss_pred             EEEEeCCHHHHHhC
Confidence            99999999888654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=2.8e-44  Score=360.90  Aligned_cols=212  Identities=22%  Similarity=0.296  Sum_probs=169.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+         +..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|..+....  
T Consensus         3 ~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~--   71 (490)
T PRK10938          3 SLQISQGTFRLS---------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS--   71 (490)
T ss_pred             eEEEEeEEEEcC---------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCC--
Confidence            699999999995         356999999999999999999999999999999999999999999999886432110  


Q ss_pred             cccCcccccchhhhhhhhhcCCCcccc--------ccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQ--------MDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                               ....++.+++.++.....        ..++..+.... .....+++.++++.+++.  .++++.+||||||
T Consensus        72 ---------~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~  141 (490)
T PRK10938         72 ---------FEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQD-EVKDPARCEQLAQQFGITALLDRRFKYLSTGET  141 (490)
T ss_pred             ---------HHHHHHHhceeccCcchhhcccchhhccccHHHhccc-chhHHHHHHHHHHHcCCHhhhhCCcccCCHHHH
Confidence                     011223344443332110        01223332210 011234567888999985  4678999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|++|+++..|+++
T Consensus       142 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~  220 (490)
T PRK10938        142 RKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGERE  220 (490)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999875 4899999999999999999999999999999999988


Q ss_pred             HHHH
Q 018938          260 KVKE  263 (348)
Q Consensus       260 ~~~~  263 (348)
                      ++..
T Consensus       221 ~~~~  224 (490)
T PRK10938        221 EILQ  224 (490)
T ss_pred             HHhc
Confidence            7754

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=2.4e-44  Score=369.68  Aligned_cols=216  Identities=23%  Similarity=0.322  Sum_probs=182.3

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      ...|+++|++|+|+.       .+..+|+|+||+|++||++||+|+||||||||+|+|+|++.|+.|+|.++|.+...- 
T Consensus       469 ~g~I~~~nvsf~y~~-------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i-  540 (709)
T COG2274         469 QGEIEFENVSFRYGP-------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI-  540 (709)
T ss_pred             CceEEEEEEEEEeCC-------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc-
Confidence            446999999999964       335799999999999999999999999999999999999999999999999875321 


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKV  174 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~L  174 (348)
                                ....+|+.++++.|+..++.....+++.++.+..+.+++.+++...+..         .    ......|
T Consensus       541 ----------~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~L  610 (709)
T COG2274         541 ----------DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL  610 (709)
T ss_pred             ----------CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCC
Confidence                      1235788899998887777666666776666666655555555554431         1    2344679


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      |||||||++|||||+++|+|||||||||+||+.+.+.+.+.|.++.  .|+|+|+|||++..+. .||+|++|++|+|++
T Consensus       611 SGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~  687 (709)
T COG2274         611 SGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLSTIR-SADRIIVLDQGKIVE  687 (709)
T ss_pred             CHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccchHhh-hccEEEEccCCceec
Confidence            9999999999999999999999999999999999999999999985  3799999999999886 599999999999999


Q ss_pred             ecChhHHHHh
Q 018938          255 AMPMDKVKEA  264 (348)
Q Consensus       255 ~g~~~~~~~~  264 (348)
                      +|+.+++.+.
T Consensus       688 ~gs~~ell~~  697 (709)
T COG2274         688 QGSHEELLAQ  697 (709)
T ss_pred             cCCHHHHHHh
Confidence            9999999875

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-44  Score=329.80  Aligned_cols=215  Identities=16%  Similarity=0.233  Sum_probs=167.8

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCeeccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRSAFH  105 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~~~~  105 (348)
                      -+++||+++|+         ++++|+++||+|++||+++|+|+||||||||+++|+|+..     |++|+|.++|.++..
T Consensus         6 ~~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~   76 (251)
T PRK14244          6 ASVKNLNLWYG---------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS   76 (251)
T ss_pred             EEeeeEEEEEC---------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence            46899999994         3579999999999999999999999999999999999976     469999999975421


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc--cCCC--C----HHHHHHHHHHcCCC------cCccC
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAGI--D----PQRRAELIKVLDID------LSWRM  171 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~----~~~~~~~l~~l~l~------~~~~~  171 (348)
                      ...     .    ...+++.++|+++....+.....+++.+.  ....  .    ...+.++++.+++.      .++.+
T Consensus        77 ~~~-----~----~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  147 (251)
T PRK14244         77 VDT-----N----VVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSA  147 (251)
T ss_pred             ccc-----c----hHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcCh
Confidence            100     0    01123445666554333332222333222  1111  1    12345678888874      24578


Q ss_pred             CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. + ++|||++|||++++..+||++++|++|+
T Consensus       148 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~  225 (251)
T PRK14244        148 FELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGR  225 (251)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCE
Confidence            8999999999999999999999999999999999999999999999984 3 7999999999999999999999999999


Q ss_pred             EeeecChhHHHHhh
Q 018938          252 LQLAMPMDKVKEAS  265 (348)
Q Consensus       252 i~~~g~~~~~~~~~  265 (348)
                      +++.++++++...+
T Consensus       226 i~~~~~~~~~~~~~  239 (251)
T PRK14244        226 IVEYNTTQEIFKNP  239 (251)
T ss_pred             EEEeCCHHHHhcCC
Confidence            99999988876543

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-43  Score=327.12  Aligned_cols=217  Identities=22%  Similarity=0.249  Sum_probs=167.6

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc--C---CCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM--V---EPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~--~---~~G~i~i~G~~  102 (348)
                      .++|+++||+++|+         .+.+|+++||+|++||+++|+||||||||||+++|+|++.  |   ++|+|.++|.+
T Consensus         3 ~~~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~   73 (252)
T PRK14255          3 KKIITSSDVHLFYG---------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN   73 (252)
T ss_pred             cceEEEEeEEEEEC---------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEE
Confidence            35799999999994         3579999999999999999999999999999999999864  4   48999999976


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc--CCC-CH----HHHHHHHHHcCCC------cC
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV--AGI-DP----QRRAELIKVLDID------LS  168 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~-~~----~~~~~~l~~l~l~------~~  168 (348)
                      +.....         ....+++.++|++++...+. .+.. ++.+..  .+. ..    +...+.++.+++.      .+
T Consensus        74 ~~~~~~---------~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~  143 (252)
T PRK14255         74 IYAPNE---------DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLH  143 (252)
T ss_pred             cccccc---------cHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHh
Confidence            532100         00112234555555433332 2333 222211  111 11    2334456666642      35


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      ..+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||++|||++++..+||++++|+
T Consensus       144 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~  221 (252)
T PRK14255        144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFL  221 (252)
T ss_pred             cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEE
Confidence            67899999999999999999999999999999999999999999999999854  4899999999999999999999999


Q ss_pred             CCEEeeecChhHHHHhh
Q 018938          249 HGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~~~  265 (348)
                      +|+++..+++.++...+
T Consensus       222 ~G~i~~~~~~~~~~~~~  238 (252)
T PRK14255        222 TGNLIEFADTKQMFLNP  238 (252)
T ss_pred             CCEEEEeCCHHHHhcCC
Confidence            99999999988876543

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.3e-44  Score=327.87  Aligned_cols=217  Identities=20%  Similarity=0.199  Sum_probs=168.9

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~  102 (348)
                      .++|+++|++++|+         ++.+|+|+||+|++||+++|+||||||||||+++|+|+..+     ++|+|.++|.+
T Consensus         4 ~~~i~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~   74 (253)
T PRK14261          4 EIILSTKNLNLWYG---------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGEN   74 (253)
T ss_pred             cceEEEeeeEEEEC---------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEE
Confidence            35899999999994         36799999999999999999999999999999999998753     47999999986


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc--CCC-C----HHHHHHHHHHcCCC------cC
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV--AGI-D----PQRRAELIKVLDID------LS  168 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~-~----~~~~~~~l~~l~l~------~~  168 (348)
                      +.....     .    ....++.++|.++...++.. ++.+. .+..  .+. .    ...+.++++.+++.      .+
T Consensus        75 ~~~~~~-----~----~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~  144 (253)
T PRK14261         75 IMDSGA-----D----VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLH  144 (253)
T ss_pred             cccccc-----c----hhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhh
Confidence            532100     0    00122345555554433332 33332 2221  111 1    12345566777652      35


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||++||+++++..+||++++|+
T Consensus       145 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~  222 (253)
T PRK14261        145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMY  222 (253)
T ss_pred             cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEE
Confidence            67899999999999999999999999999999999999999999999999864  5899999999999999999999999


Q ss_pred             CCEEeeecChhHHHHhh
Q 018938          249 HGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~~~  265 (348)
                      +|+++..|+++++...+
T Consensus       223 ~G~i~~~g~~~~~~~~~  239 (253)
T PRK14261        223 LGKLIEFDKTTQIFENP  239 (253)
T ss_pred             CCEEEEcCCHHHHHhCC
Confidence            99999999998876543

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=5e-44  Score=362.13  Aligned_cols=223  Identities=24%  Similarity=0.327  Sum_probs=174.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeec
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSA  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~  103 (348)
                      ++|+++||+++|+..+     +.+++|+++||+|++||+++|+||||||||||+|+|+|+++|     ++|+|.++|.++
T Consensus         4 ~~l~~~~l~~~~~~~~-----~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i   78 (529)
T PRK15134          4 PLLAIENLSVAFRQQQ-----TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL   78 (529)
T ss_pred             ceEEEeceEEEecCCC-----CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEec
Confidence            5799999999995200     125799999999999999999999999999999999999986     689999999865


Q ss_pred             cccccccccCcccccchhhh-hhhhhcCCCcc--ccccchHHHHHh-c--c-CCCC----HHHHHHHHHHcCCC-----c
Q 018938          104 FHDTALTSSGDLSYLGGEWR-REVAFAGFEVP--IQMDVSAEKMIF-G--V-AGID----PQRRAELIKVLDID-----L  167 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~--~-~~~~----~~~~~~~l~~l~l~-----~  167 (348)
                      ......    ..    ..++ +.++|++|+..  .....+..+... .  . .+..    .+++.++++.+++.     .
T Consensus        79 ~~~~~~----~~----~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~  150 (529)
T PRK15134         79 LHASEQ----TL----RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRL  150 (529)
T ss_pred             ccCCHH----HH----HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH
Confidence            321100    00    0011 24566555432  222233333221 1  1 1112    23456788889985     2


Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|+|||+||||++++..+||||++|
T Consensus       151 ~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l  230 (529)
T PRK15134        151 TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVM  230 (529)
T ss_pred             hhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence            67899999999999999999999999999999999999999999999999987666899999999999999999999999


Q ss_pred             cCCEEeeecChhHHHHh
Q 018938          248 AHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       248 ~~G~i~~~g~~~~~~~~  264 (348)
                      ++|++++.|+++++...
T Consensus       231 ~~G~i~~~g~~~~~~~~  247 (529)
T PRK15134        231 QNGRCVEQNRAATLFSA  247 (529)
T ss_pred             ECCEEEEeCCHHHHhhC
Confidence            99999999999887654

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1.8e-43  Score=322.46  Aligned_cols=210  Identities=25%  Similarity=0.365  Sum_probs=161.9

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|++        .+.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+....   
T Consensus         1 l~~~~l~~~~~~--------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~---   69 (236)
T cd03253           1 IEFENVTFAYDP--------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT---   69 (236)
T ss_pred             CEEEEEEEEeCC--------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC---
Confidence            468999999952        356999999999999999999999999999999999999999999999997542210   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcC-----------CC--cCccCCCCCH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLD-----------ID--LSWRMHKVSD  176 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~-----------l~--~~~~~~~LSg  176 (348)
                              ...+++.++|.++...++. .+..+.+ +...........+.++..+           +.  .++++.+|||
T Consensus        70 --------~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~  140 (236)
T cd03253          70 --------LDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSG  140 (236)
T ss_pred             --------HHHHHhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCH
Confidence                    0123344566655543332 3443332 2222222222222222222           21  2345789999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||+|||+.++..+.++|.+++ + |.|||++||+++++.. ||++++|++|+++..+
T Consensus       141 G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~  217 (236)
T cd03253         141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERG  217 (236)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeC
Confidence            99999999999999999999999999999999999999999985 4 8999999999999975 9999999999999998


Q ss_pred             ChhHHHH
Q 018938          257 PMDKVKE  263 (348)
Q Consensus       257 ~~~~~~~  263 (348)
                      +.+++..
T Consensus       218 ~~~~~~~  224 (236)
T cd03253         218 THEELLA  224 (236)
T ss_pred             CHHHHhh
Confidence            8877654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-43  Score=337.87  Aligned_cols=221  Identities=21%  Similarity=0.269  Sum_probs=174.1

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~  102 (348)
                      ..+|+++|++++|.+       +..++|+|+||+|++||++||+||||||||||+++|+|+..     |++|+|.++|.+
T Consensus        78 ~~~i~~~nls~~y~~-------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~  150 (329)
T PRK14257         78 ANVFEIRNFNFWYMN-------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN  150 (329)
T ss_pred             CceEEEEeeEEEecC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence            358999999999953       23579999999999999999999999999999999999985     579999999987


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchH-HHHHhcc--CCCC-HH----HHHHHHHHcCCC------cC
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFGV--AGID-PQ----RRAELIKVLDID------LS  168 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~-~~----~~~~~l~~l~l~------~~  168 (348)
                      +....       ..  ...++..++|++++..++. .+. +++.++.  .... .+    .+..+++.+++.      .+
T Consensus       151 i~~~~-------~~--~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~  220 (329)
T PRK14257        151 TRSKK-------IS--SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLD  220 (329)
T ss_pred             ccccc-------cc--hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhh
Confidence            53110       00  0123445666655544333 333 3333322  1122 11    134566776652      35


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      .++.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++.+  ++|||+|||+++++..+||||++|+
T Consensus       221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~  298 (329)
T PRK14257        221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFY  298 (329)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            67899999999999999999999999999999999999999999999998863  6899999999999999999999999


Q ss_pred             CCEEeeecChhHHHHhhhh
Q 018938          249 HGKLQLAMPMDKVKEASKL  267 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~~~~~  267 (348)
                      +|++++.|+++++.+.+.+
T Consensus       299 ~G~i~e~g~~~~l~~~~~~  317 (329)
T PRK14257        299 QGWIEEAGETKTIFIHPKN  317 (329)
T ss_pred             CCEEEEeCCHHHHhcCCCc
Confidence            9999999999999875543

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-43  Score=327.55  Aligned_cols=215  Identities=19%  Similarity=0.261  Sum_probs=169.4

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCeec
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRSA  103 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~~  103 (348)
                      ++|+++|++++|+         ...+|+++||+|++||+++|+|+||||||||+|+|+|+++|     ++|+|.++|.++
T Consensus         6 ~~l~~~~l~~~~~---------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i   76 (259)
T PRK14260          6 PAIKVKDLSFYYN---------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNI   76 (259)
T ss_pred             ceEEEEEEEEEEC---------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEec
Confidence            4799999999994         35799999999999999999999999999999999999875     479999999765


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CC-CC----HHHHHHHHHHcCCC------cCc
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AG-ID----PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~----~~~~~~~l~~l~l~------~~~  169 (348)
                      .....         ....++..++|++++...+. .+..+.+ +..  .. ..    .+.+.++++.+++.      .++
T Consensus        77 ~~~~~---------~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~  146 (259)
T PRK14260         77 YDPRI---------NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNK  146 (259)
T ss_pred             ccccc---------chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcC
Confidence            32100         00122344666655543333 3443332 221  11 11    12345677777762      356


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc-
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-  248 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~-  248 (348)
                      ++.+|||||+|||+|||||+.+|++|||||||+|||+.++..++++|+++.+  ++|||++||+++++..+||++++|+ 
T Consensus       147 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~  224 (259)
T PRK14260        147 SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFST  224 (259)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEec
Confidence            7899999999999999999999999999999999999999999999999853  5899999999999999999999997 


Q ss_pred             ----CCEEeeecChhHHHHh
Q 018938          249 ----HGKLQLAMPMDKVKEA  264 (348)
Q Consensus       249 ----~G~i~~~g~~~~~~~~  264 (348)
                          +|++++.|+++++.+.
T Consensus       225 ~~~~~G~i~~~~~~~~~~~~  244 (259)
T PRK14260        225 DESRIGQMVEFGVTTQIFSN  244 (259)
T ss_pred             cCCCCceEEEeCCHHHHhcC
Confidence                5999999999988654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=5.9e-44  Score=361.62  Aligned_cols=229  Identities=18%  Similarity=0.270  Sum_probs=175.8

Q ss_pred             CCeEEEeceEEEecCCCC--CCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccc
Q 018938           28 KPTVEINALKFTYPGIDG--HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFH  105 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~--~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~  105 (348)
                      .++|+++||+++|+...+  ++..+++.+|+++||+|++||+++|+||||||||||+|+|+|++ |++|+|+++|.++..
T Consensus       273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~  351 (529)
T PRK15134        273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHN  351 (529)
T ss_pred             CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccc
Confidence            457999999999952000  00001357999999999999999999999999999999999998 589999999976432


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hcc--C--CCC----HHHHHHHHHHcCCC---cCccC
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FGV--A--GID----PQRRAELIKVLDID---LSWRM  171 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~--~--~~~----~~~~~~~l~~l~l~---~~~~~  171 (348)
                      ...    ...    ..++..++|+++..  .++...++.+.+ +..  .  ...    .+++.++++.+++.   .++++
T Consensus       352 ~~~----~~~----~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  423 (529)
T PRK15134        352 LNR----RQL----LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP  423 (529)
T ss_pred             cch----hhH----HHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC
Confidence            110    000    01233456655443  123333443322 211  1  111    23456788889985   36789


Q ss_pred             CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      .+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||++++|++|+
T Consensus       424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~  503 (529)
T PRK15134        424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE  503 (529)
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence            99999999999999999999999999999999999999999999999986668999999999999999999999999999


Q ss_pred             EeeecChhHHHHhh
Q 018938          252 LQLAMPMDKVKEAS  265 (348)
Q Consensus       252 i~~~g~~~~~~~~~  265 (348)
                      +++.|+++++.+.+
T Consensus       504 i~~~~~~~~~~~~~  517 (529)
T PRK15134        504 VVEQGDCERVFAAP  517 (529)
T ss_pred             EEEEcCHHHHhcCC
Confidence            99999998887543

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.3e-43  Score=319.10  Aligned_cols=201  Identities=23%  Similarity=0.369  Sum_probs=160.4

Q ss_pred             CCCCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938           25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF  104 (348)
Q Consensus        25 ~~~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~  104 (348)
                      ....++|+++|++++|+         ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+.
T Consensus         6 ~~~~~~l~~~~l~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~   76 (214)
T PRK13543          6 HTAPPLLAAHALAFSRN---------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT   76 (214)
T ss_pred             CCCcceEEEeeEEEecC---------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEcc
Confidence            34557899999999994         357999999999999999999999999999999999999999999999997642


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC-HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID-PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~-~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                      ..              ..++.++|.++....+...+..+.+ +.  ..+.. .+...++++.+++.  .+.++.+|||||
T Consensus        77 ~~--------------~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~  142 (214)
T PRK13543         77 RG--------------DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQ  142 (214)
T ss_pred             ch--------------hhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHH
Confidence            11              0112344444333333333333322 11  11222 23456788888875  467889999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ||||+|||||+.+|++|||||||++||+.++..+.++|+++.+ .|.|||++|||++++..+||++++++.
T Consensus       143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChhhhhhhcceEEEEee
Confidence            9999999999999999999999999999999999999999865 489999999999999999999999863

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=1.6e-43  Score=329.46  Aligned_cols=211  Identities=17%  Similarity=0.265  Sum_probs=171.0

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+++|+.       +...+|+|+||+|++||+++|+|+||||||||+++|+|++. ++|+|.++|.++....   
T Consensus         3 i~~~nls~~~~~-------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~---   71 (275)
T cd03289           3 MTVKDLTAKYTE-------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVP---   71 (275)
T ss_pred             EEEEEEEEEeCC-------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCC---
Confidence            789999999953       24579999999999999999999999999999999999986 7899999997642210   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCC-----------CCHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHK-----------VSDG  177 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------LSgG  177 (348)
                              ...+++.++|++++..++.. +..+++........+++.++++.+++.  .++.+..           ||||
T Consensus        72 --------~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G  142 (275)
T cd03289          72 --------LQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHG  142 (275)
T ss_pred             --------HHHHhhhEEEECCCcccchh-hHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHH
Confidence                    11345567777666554433 444433222223455667778888874  2344544           9999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      ||||++|||||+.+|++|||||||++||+.++..+.+.|+++.  .++|||+|||+++++.. ||||++|++|++++.|+
T Consensus       143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~  219 (275)
T cd03289         143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDS  219 (275)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCC
Confidence            9999999999999999999999999999999999999999863  38999999999999875 99999999999999999


Q ss_pred             hhHHHHh
Q 018938          258 MDKVKEA  264 (348)
Q Consensus       258 ~~~~~~~  264 (348)
                      ++++.+.
T Consensus       220 ~~~l~~~  226 (275)
T cd03289         220 IQKLLNE  226 (275)
T ss_pred             HHHHhhC
Confidence            9998874

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=2.1e-43  Score=315.96  Aligned_cols=202  Identities=20%  Similarity=0.251  Sum_probs=159.9

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++|++++|+.       ...++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.... 
T Consensus         5 ~~l~~~~l~~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-   76 (207)
T cd03369           5 GEIEVENLSVRYAP-------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP-   76 (207)
T ss_pred             CeEEEEEEEEEeCC-------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCC-
Confidence            46999999999952       1247999999999999999999999999999999999999999999999997642110 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL  188 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL  188 (348)
                                ...+++.++|++++..+.. .+..+.+........+...+.   ++  .+.++.+|||||+||++|||||
T Consensus        77 ----------~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~---l~--~~~~~~~LS~G~~qrv~laral  140 (207)
T cd03369          77 ----------LEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGA---LR--VSEGGLNLSQGQRQLLCLARAL  140 (207)
T ss_pred             ----------HHHHHhhEEEEecCCcccC-ccHHHHhcccCCCCHHHHHHH---hh--ccCCCCcCCHHHHHHHHHHHHH
Confidence                      0123345666655543333 244443321212222333333   33  3567899999999999999999


Q ss_pred             ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      +.+|++|||||||++||+.++..++++|+++. + |.|+|++||+++++.. ||++++|++|+++..|+
T Consensus       141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         141 LKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH  206 (207)
T ss_pred             hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence            99999999999999999999999999999974 3 8999999999999976 99999999999988765

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1.4e-43  Score=320.00  Aligned_cols=205  Identities=16%  Similarity=0.250  Sum_probs=160.6

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|++       +.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....   
T Consensus         3 l~~~~l~~~~~~-------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---   72 (221)
T cd03244           3 IEFKNVSLRYRP-------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG---   72 (221)
T ss_pred             EEEEEEEEecCC-------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC---
Confidence            789999999963       2357999999999999999999999999999999999999999999999997542111   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCCHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVSDG  177 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgG  177 (348)
                              ...+++.++|.++...+.. .+..+.+........++..++++.+++.             .+.++.+||||
T Consensus        73 --------~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G  143 (221)
T cd03244          73 --------LHDLRSRISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVG  143 (221)
T ss_pred             --------HHHHhhhEEEECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHH
Confidence                    0123345666655443332 2344333222122334444455555432             13568899999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |+||++|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++||+++++.. ||++++|++|++++.++
T Consensus       144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS  220 (221)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence            9999999999999999999999999999999999999999874 3 6899999999999975 99999999999988764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1e-43  Score=347.13  Aligned_cols=217  Identities=26%  Similarity=0.386  Sum_probs=179.7

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++++++|++|+|+         ..+||++|||++.+||+++|+|.||||||||+|+|+|.++|++|+|.++|+......
T Consensus         6 ~~ll~~~~i~K~Fg---------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~s   76 (500)
T COG1129           6 PPLLELRGISKSFG---------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSS   76 (500)
T ss_pred             cceeeeecceEEcC---------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCC
Confidence            46899999999995         578999999999999999999999999999999999999999999999998753221


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-ccC------CCCH----HHHHHHHHHcCCC--cCccCCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA------GIDP----QRRAELIKVLDID--LSWRMHKV  174 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~----~~~~~~l~~l~l~--~~~~~~~L  174 (348)
                      +.          ......+..+.|+..+.+++++.+++| +..      ..++    .+..++++.+++.  .+.++.+|
T Consensus        77 p~----------~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~L  146 (500)
T COG1129          77 PR----------DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDL  146 (500)
T ss_pred             HH----------HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhC
Confidence            11          112233455556666777777665543 221      1222    3456788888764  57788999


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      |.||||.|+|||||..+++|||||||||+|+....+.++++++++. ++|.+||+|||.++++.++||||.||++|+.+.
T Consensus       147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~  225 (500)
T COG1129         147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLDEVFEIADRITVLRDGRVVG  225 (500)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence            9999999999999999999999999999999999999999999986 569999999999999999999999999999999


Q ss_pred             ecC-hhHHHHh
Q 018938          255 AMP-MDKVKEA  264 (348)
Q Consensus       255 ~g~-~~~~~~~  264 (348)
                      ..+ ..++...
T Consensus       226 ~~~~~~~~~~~  236 (500)
T COG1129         226 TRPTAAETSED  236 (500)
T ss_pred             ecccccCCCHH
Confidence            888 4555443

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.6e-43  Score=357.85  Aligned_cols=227  Identities=22%  Similarity=0.310  Sum_probs=174.5

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEc-Ceecccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL-GRSAFHD  106 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~-G~~~~~~  106 (348)
                      .++|+++||+++|++.+    .+.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.....-
T Consensus       277 ~~~l~~~~l~~~~~~~~----~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~  352 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVD----RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDM  352 (520)
T ss_pred             CceEEEeccEEEeccCC----CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccc
Confidence            45899999999995200    023569999999999999999999999999999999999999999999995 5321000


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC-CCC----HHHHHHHHHHcCCC-------cCccCCC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA-GID----PQRRAELIKVLDID-------LSWRMHK  173 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~----~~~~~~~l~~l~l~-------~~~~~~~  173 (348)
                      ..... ..    ....++.++|+++...++..+++.+.+ +... ...    .+++.++++.+++.       .++++.+
T Consensus       353 ~~~~~-~~----~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~  427 (520)
T TIGR03269       353 TKPGP-DG----RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE  427 (520)
T ss_pred             cccch-hh----HHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhh
Confidence            00000 00    001233466665554444444444433 1110 111    13456788888885       2578999


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||++++|++|+++
T Consensus       428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~  507 (520)
T TIGR03269       428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV  507 (520)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999997766899999999999999999999999999999


Q ss_pred             eecChhHHHH
Q 018938          254 LAMPMDKVKE  263 (348)
Q Consensus       254 ~~g~~~~~~~  263 (348)
                      +.|+++++.+
T Consensus       508 ~~g~~~~~~~  517 (520)
T TIGR03269       508 KIGDPEEIVE  517 (520)
T ss_pred             EECCHHHHHh
Confidence            9998877643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=1.1e-43  Score=309.32  Aligned_cols=173  Identities=29%  Similarity=0.499  Sum_probs=143.8

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         ..++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|..+....   
T Consensus         1 l~~~~l~~~~~---------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~---   68 (173)
T cd03230           1 IEVRNLSKRYG---------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP---   68 (173)
T ss_pred             CEEEEEEEEEC---------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch---
Confidence            46899999995         347999999999999999999999999999999999999999999999997542110   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~  190 (348)
                               ..++..++|.+++...+...+..+.+               .            |||||+||++|||||+.
T Consensus        69 ---------~~~~~~i~~~~q~~~~~~~~tv~~~~---------------~------------LS~G~~qrv~laral~~  112 (173)
T cd03230          69 ---------EEVKRRIGYLPEEPSLYENLTVRENL---------------K------------LSGGMKQRLALAQALLH  112 (173)
T ss_pred             ---------HhhhccEEEEecCCccccCCcHHHHh---------------h------------cCHHHHHHHHHHHHHHc
Confidence                     12234455655543322222222211               0            99999999999999999


Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      +|++|||||||++||+.++..+.++|+++.++ |.|||++|||.+++..+||++++|++|++
T Consensus       113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         113 DPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            99999999999999999999999999998765 89999999999999999999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-43  Score=355.86  Aligned_cols=209  Identities=23%  Similarity=0.376  Sum_probs=169.3

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus         3 ~~l~~~~l~~~~~---------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~   73 (501)
T PRK11288          3 PYLSFDGIGKTFP---------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAST   73 (501)
T ss_pred             ceEEEeeeEEEEC---------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH
Confidence            5799999999994         3579999999999999999999999999999999999999999999999976421100


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc----CC-CC----HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV----AG-ID----PQRRAELIKVLDID--LSWRMHKVSD  176 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~-~~----~~~~~~~l~~l~l~--~~~~~~~LSg  176 (348)
                                ...+++.++|+++....+...+..+.+ +..    .. ..    .+++.++++.+++.  .++++.+|||
T Consensus        74 ----------~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg  143 (501)
T PRK11288         74 ----------TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSI  143 (501)
T ss_pred             ----------HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCH
Confidence                      011234456665554444444444332 221    11 11    23456788888885  3678899999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.|||+||||++++..+||++++|++|+++..+
T Consensus       144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~  222 (501)
T PRK11288        144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVATF  222 (501)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence            999999999999999999999999999999999999999999864 5899999999999999999999999999998765


Q ss_pred             C
Q 018938          257 P  257 (348)
Q Consensus       257 ~  257 (348)
                      +
T Consensus       223 ~  223 (501)
T PRK11288        223 D  223 (501)
T ss_pred             C
Confidence            4

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.3e-43  Score=316.79  Aligned_cols=196  Identities=24%  Similarity=0.325  Sum_probs=158.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++|++++|+         .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....  
T Consensus         1 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~--   69 (204)
T PRK13538          1 MLEARNLACERD---------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR--   69 (204)
T ss_pred             CeEEEEEEEEEC---------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch--
Confidence            488999999994         357999999999999999999999999999999999999999999999997642110  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~  183 (348)
                                ..+++.+++.++...+....+..+.+ +.  ... ...+++.++++.+++.  .++++.+||||||||++
T Consensus        70 ----------~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~  139 (204)
T PRK13538         70 ----------DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVA  139 (204)
T ss_pred             ----------HHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHH
Confidence                      11233455554443333334444332 21  111 2334567789999985  46788999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      |||||+.+|++|||||||++||+.++..++++|+++++ .|.|||++|||++++..+.+|++++
T Consensus       140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhhhccCCceEEec
Confidence            99999999999999999999999999999999999864 4889999999999999988888776

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=1.4e-43  Score=310.09  Aligned_cols=178  Identities=25%  Similarity=0.383  Sum_probs=143.2

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  
T Consensus         1 i~~~~l~~~~~---------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--   69 (178)
T cd03229           1 LELKNVSKRYG---------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED--   69 (178)
T ss_pred             CEEEEEEEEEC---------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccch--
Confidence            46899999994         3579999999999999999999999999999999999999999999999975422100  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~  190 (348)
                             ....+++.++|.++....+...+..+...                  +       .||||||||++|||||+.
T Consensus        70 -------~~~~~~~~i~~~~q~~~~~~~~t~~~~l~------------------~-------~lS~G~~qr~~la~al~~  117 (178)
T cd03229          70 -------ELPPLRRRIGMVFQDFALFPHLTVLENIA------------------L-------GLSGGQQQRVALARALAM  117 (178)
T ss_pred             -------hHHHHhhcEEEEecCCccCCCCCHHHhee------------------e-------cCCHHHHHHHHHHHHHHC
Confidence                   00112334555544322222222222110                  0       099999999999999999


Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      +|++|||||||+|||+.++..++++|++++++.|.|+|++|||++++..+||++++|++|+
T Consensus       118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            9999999999999999999999999999876557999999999999999999999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=1e-43  Score=322.03  Aligned_cols=193  Identities=21%  Similarity=0.317  Sum_probs=155.7

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      +.++|++++|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|......    
T Consensus        23 l~~~~~~~~~~---------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----   89 (224)
T cd03220          23 LGILGRKGEVG---------EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL----   89 (224)
T ss_pred             hhhhhhhhhcC---------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----
Confidence            77899999994         47899999999999999999999999999999999999999999999999753210    


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                  .....+.       ...++.+.+ +.  ..+..    .++..++++.+++.  .++++.+||||||||
T Consensus        90 ------------~~~~~~~-------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr  150 (224)
T cd03220          90 ------------GLGGGFN-------PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKAR  150 (224)
T ss_pred             ------------cccccCC-------CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence                        0001111       112222211 11  01111    12355677788875  367789999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ++|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++++..+||++++|++|+++..|
T Consensus       151 v~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         151 LAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999999998754 899999999999999999999999999998654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=4.3e-43  Score=322.28  Aligned_cols=212  Identities=19%  Similarity=0.232  Sum_probs=159.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCCceEEEcCeeccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~G~i~i~G~~~~~~~  107 (348)
                      +|+++||+++|+         ++++|+++||+|++|++++|+||||||||||+++|+|++  +|++|+|.++|.++....
T Consensus         1 ~i~~~nl~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~   71 (248)
T PRK09580          1 MLSIKDLHVSVE---------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELS   71 (248)
T ss_pred             CeEEEEEEEEeC---------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCC
Confidence            488999999995         357999999999999999999999999999999999994  699999999997542110


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHH-------HhccCC---CC----HHHHHHHHHHcCCC---cCcc
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-------IFGVAG---ID----PQRRAELIKVLDID---LSWR  170 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~----~~~~~~~l~~l~l~---~~~~  170 (348)
                      ..          ...+..++|.++........+...+       ......   ..    .+.+.++++.+++.   .++.
T Consensus        72 ~~----------~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  141 (248)
T PRK09580         72 PE----------DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRS  141 (248)
T ss_pred             HH----------HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccC
Confidence            00          0001223343333222111111110       000000   11    12345677777774   2445


Q ss_pred             CC-CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEEEEc
Q 018938          171 MH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIVYVA  248 (348)
Q Consensus       171 ~~-~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~~l~  248 (348)
                      +. +|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++++ .|+|||++|||++++..+ ||++++|+
T Consensus       142 ~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~  220 (248)
T PRK09580        142 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLY  220 (248)
T ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEE
Confidence            54 7999999999999999999999999999999999999999999999864 589999999999999987 89999999


Q ss_pred             CCEEeeecChhHH
Q 018938          249 HGKLQLAMPMDKV  261 (348)
Q Consensus       249 ~G~i~~~g~~~~~  261 (348)
                      +|+++..|+++.+
T Consensus       221 ~g~i~~~g~~~~~  233 (248)
T PRK09580        221 QGRIVKSGDFTLV  233 (248)
T ss_pred             CCeEEEeCCHHHH
Confidence            9999999887643

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=2e-43  Score=304.79  Aligned_cols=162  Identities=23%  Similarity=0.410  Sum_probs=138.1

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  
T Consensus         1 l~~~~l~~~~~---------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~--   69 (163)
T cd03216           1 LELRGITKRFG---------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP--   69 (163)
T ss_pred             CEEEEEEEEEC---------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCH--
Confidence            47899999995         3579999999999999999999999999999999999999999999999875321000  


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~  190 (348)
                              ....++.++|.                                          .+|||||+||++|||||+.
T Consensus        70 --------~~~~~~~i~~~------------------------------------------~qLS~G~~qrl~laral~~   99 (163)
T cd03216          70 --------RDARRAGIAMV------------------------------------------YQLSVGERQMVEIARALAR   99 (163)
T ss_pred             --------HHHHhcCeEEE------------------------------------------EecCHHHHHHHHHHHHHhc
Confidence                    00001112221                                          1199999999999999999


Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      +|++|||||||++||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|++++
T Consensus       100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         100 NARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            9999999999999999999999999999864 48999999999999999999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=1.9e-43  Score=321.44  Aligned_cols=198  Identities=22%  Similarity=0.244  Sum_probs=157.8

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC----CCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV----EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA  129 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~----~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (348)
                      +|+|+||+|++|++++|+||||||||||+|+|+|+++|    ++|+|.++|.++... .            ..++.++|+
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~------------~~~~~i~~~   67 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-S------------IRGRHIATI   67 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-h------------hhhheeEEE
Confidence            57899999999999999999999999999999999998    899999999764211 0            011234444


Q ss_pred             CCCcc--ccccchHHHHH-hc--cCCC-C---HHHHHHHHHHcCCC-----cCccCCCCCHHHHHHHHHHHHHccCCcEE
Q 018938          130 GFEVP--IQMDVSAEKMI-FG--VAGI-D---PQRRAELIKVLDID-----LSWRMHKVSDGQRRRVQICMGLLKPFKVL  195 (348)
Q Consensus       130 ~~~~~--~~~~~~~~~~~-~~--~~~~-~---~~~~~~~l~~l~l~-----~~~~~~~LSgGqrQRv~lAraL~~~P~lL  195 (348)
                      +++..  +...++..+.+ +.  .... .   .+++.++++.+++.     .++.+.+|||||||||+|||||+.+|++|
T Consensus        68 ~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vl  147 (230)
T TIGR02770        68 MQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFL  147 (230)
T ss_pred             ecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence            44321  22223333221 11  1111 1   23466788888885     35678999999999999999999999999


Q ss_pred             EeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHh
Q 018938          196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       196 lLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  264 (348)
                      ||||||+|||+.++..+.++|++++++.|.|||++||+++++..+||++++|++|+++..++++++...
T Consensus       148 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  216 (230)
T TIGR02770       148 IADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN  216 (230)
T ss_pred             EEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            999999999999999999999998765689999999999999999999999999999999999888653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-43  Score=324.13  Aligned_cols=217  Identities=18%  Similarity=0.203  Sum_probs=171.3

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCe
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGR  101 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~  101 (348)
                      ..+.+.+++++++|+         +.++|+++||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|.
T Consensus         5 ~~~~~~~~~~~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~   75 (261)
T PRK14263          5 APIVMDCKLDKIFYG---------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQ   75 (261)
T ss_pred             CCceEEEEeEEEEeC---------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCE
Confidence            346799999999994         46799999999999999999999999999999999999876     7999999998


Q ss_pred             eccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCC---HHHHHHHHHHcCCC------cCc
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGID---PQRRAELIKVLDID------LSW  169 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~---~~~~~~~l~~l~l~------~~~  169 (348)
                      ++..... .        ...+++.++|+++...++ ..+..+ +.+..  ....   .+++.++++.+++.      .+.
T Consensus        76 ~i~~~~~-~--------~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~  145 (261)
T PRK14263         76 DVYGKGV-D--------PVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV  145 (261)
T ss_pred             ecccccc-c--------hHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhC
Confidence            6431100 0        012234466665543333 234433 32221  1111   23456778888763      135


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc-
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-  248 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~-  248 (348)
                      ++.+|||||+||++|||||+.+|++|||||||+|||+.++..++++|+++. + +.|||++||+++++..+||++++|+ 
T Consensus       146 ~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~  223 (261)
T PRK14263        146 SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSV  223 (261)
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEec
Confidence            678999999999999999999999999999999999999999999999984 3 6899999999999999999999995 


Q ss_pred             -------CCEEeeecChhHHHHh
Q 018938          249 -------HGKLQLAMPMDKVKEA  264 (348)
Q Consensus       249 -------~G~i~~~g~~~~~~~~  264 (348)
                             +|++++.|+.+++.+.
T Consensus       224 ~~~~~~~~G~i~~~g~~~~~~~~  246 (261)
T PRK14263        224 DISQGTRTGYLVEMGPTAQIFQN  246 (261)
T ss_pred             ccccccCCceEEEeCCHHHHHhC
Confidence                   8999999999988654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1.8e-43  Score=321.54  Aligned_cols=191  Identities=24%  Similarity=0.284  Sum_probs=153.3

Q ss_pred             eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938           55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP  134 (348)
Q Consensus        55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (348)
                      |+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....                ..+++++...
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----------------~~~~v~q~~~   64 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP----------------DRMVVFQNYS   64 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh----------------hheEEecCcc
Confidence            578999999999999999999999999999999999999999999976422100                0123333333


Q ss_pred             ccccchHHHHH-hc----cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCC
Q 018938          135 IQMDVSAEKMI-FG----VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD  203 (348)
Q Consensus       135 ~~~~~~~~~~~-~~----~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsg  203 (348)
                      .+...+..+.+ +.    ......    +++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus        65 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g  144 (230)
T TIGR01184        65 LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA  144 (230)
T ss_pred             cCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            33333443322 21    112221    2356788888886  3678899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          204 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       204 LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      ||+.++..+.+.|.+++++.|+|||++|||++++..+||++++|++|+++..|+...+
T Consensus       145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence            9999999999999998766689999999999999999999999999999988866544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4.2e-44  Score=320.69  Aligned_cols=223  Identities=31%  Similarity=0.519  Sum_probs=176.6

Q ss_pred             eEEEeceEEEecCCC------C------CCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE
Q 018938           30 TVEINALKFTYPGID------G------HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK   97 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~------~------~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~   97 (348)
                      ++.++||+|.|.-..      |      ++......++.||||+|++|++++++|||||||||++|+|+|++.|++|.|.
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~   82 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR   82 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence            578888888884211      1      1111234689999999999999999999999999999999999999999999


Q ss_pred             EcCeeccccccccccCcccccchhhhhhhhhcC-CCccccc------cchHHHHHhccCCC-CHHHHHHHHHHcCCC--c
Q 018938           98 VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG-FEVPIQM------DVSAEKMIFGVAGI-DPQRRAELIKVLDID--L  167 (348)
Q Consensus        98 i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~--~  167 (348)
                      ++|.+++...            +.+-+.++++. +...+..      .+.....++..+.. -.++...+.+.++++  .
T Consensus        83 V~G~~Pf~~~------------~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~l  150 (325)
T COG4586          83 VNGKDPFRRR------------EEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFL  150 (325)
T ss_pred             ecCcCcchhH------------HHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhh
Confidence            9998765421            11223333321 1112222      22222233322211 134566788888887  6


Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      .++++.||-|||.|+.||.||+++|+||+|||||-|||...+..+.++|++++++++.||+++||+++.+.++||||++|
T Consensus       151 k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I  230 (325)
T COG4586         151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLI  230 (325)
T ss_pred             hhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEe
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEeeecChhHHHHh
Q 018938          248 AHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       248 ~~G~i~~~g~~~~~~~~  264 (348)
                      +.|+++++|+.+++.+.
T Consensus       231 ~~Gqlv~dg~l~~l~~~  247 (325)
T COG4586         231 DQGQLVFDGTLAQLQEQ  247 (325)
T ss_pred             eCCcEeecccHHHHHHH
Confidence            99999999999988764

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=1.8e-43  Score=319.35  Aligned_cols=208  Identities=27%  Similarity=0.426  Sum_probs=162.8

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|+++.|+..+     +.+.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...... 
T Consensus         2 l~~~~l~~~~~~~~-----~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-   75 (220)
T TIGR02982         2 ISIRNLNHYYGHGS-----LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEK-   75 (220)
T ss_pred             EEEEEEEEEccCCC-----cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHh-
Confidence            78999999995310     125799999999999999999999999999999999999999999999999864321100 


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--C-CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--A-GID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                             ....+++.++|.++....+...+..+.+ +..  . ...    ...+.++++.+++.  .++.+.+||+||||
T Consensus        76 -------~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q  148 (220)
T TIGR02982        76 -------ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQ  148 (220)
T ss_pred             -------HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH
Confidence                   0001234456665554444434443322 111  1 112    13456788888885  36788999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      |++|||||+.+|++|||||||+|||+.++..+.++|+++.++.++|||++|||++.. .+||++++|++|++
T Consensus       149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~  219 (220)
T TIGR02982       149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence            999999999999999999999999999999999999998766689999999999864 79999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=2.5e-43  Score=307.06  Aligned_cols=173  Identities=24%  Similarity=0.386  Sum_probs=141.0

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|++       +...+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....   
T Consensus         1 i~~~~l~~~~~~-------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~---   70 (173)
T cd03246           1 LEVENVSFRYPG-------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD---   70 (173)
T ss_pred             CEEEEEEEEcCC-------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC---
Confidence            468999999953       2356999999999999999999999999999999999999999999999997542110   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~  190 (348)
                              ...+++.++|.+++..++. .+..+.                  +          |||||+||++|||||+.
T Consensus        71 --------~~~~~~~i~~~~q~~~~~~-~tv~~~------------------l----------LS~G~~qrv~la~al~~  113 (173)
T cd03246          71 --------PNELGDHVGYLPQDDELFS-GSIAEN------------------I----------LSGGQRQRLGLARALYG  113 (173)
T ss_pred             --------HHHHHhheEEECCCCcccc-CcHHHH------------------C----------cCHHHHHHHHHHHHHhc
Confidence                    0122344555544322111 111111                  0          99999999999999999


Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      +|++|||||||++||+.++..++++|+++.+ .|.|||++|||++++. +||++++|++|++
T Consensus       114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~-~~d~v~~l~~G~i  173 (173)
T cd03246         114 NPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETLA-SADRILVLEDGRV  173 (173)
T ss_pred             CCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence            9999999999999999999999999999864 5899999999999985 7999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=3.1e-43  Score=313.89  Aligned_cols=196  Identities=18%  Similarity=0.220  Sum_probs=153.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc---CCCceEEEcCeecccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFHD  106 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~---~~~G~i~i~G~~~~~~  106 (348)
                      .+.++||+|.|+..     .+++.+|+++||+|++||+++|+||||||||||+++|+|+++   |++|+|.++|.++...
T Consensus         3 ~~~~~~~~~~~~~~-----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~   77 (202)
T cd03233           3 TLSWRNISFTTGKG-----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF   77 (202)
T ss_pred             eEEEEccEEEeccC-----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc
Confidence            68999999999642     135679999999999999999999999999999999999998   8999999999764321


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHH
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICM  186 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAr  186 (348)
                      .            ...++.++|.+++...+..++..+.+....     .       .  ..++++.+|||||+||++|||
T Consensus        78 ~------------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-----~-------~--~~~~~~~~LS~Ge~qrl~lar  131 (202)
T cd03233          78 A------------EKYPGEIIYVSEEDVHFPTLTVRETLDFAL-----R-------C--KGNEFVRGISGGERKRVSIAE  131 (202)
T ss_pred             h------------hhhcceEEEEecccccCCCCcHHHHHhhhh-----h-------h--ccccchhhCCHHHHHHHHHHH
Confidence            0            112234555554443333444444321100     0       0  045678899999999999999


Q ss_pred             HHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEE-EecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY-ATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       187 aL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvii-vtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||+.+|++|||||||++||+.++..++++|+++.++.+.|+|+ ++|+.+++..+||++++|++|+++..|
T Consensus       132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g  202 (202)
T cd03233         132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG  202 (202)
T ss_pred             HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence            9999999999999999999999999999999987655666555 456678999999999999999998653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.5e-43  Score=354.89  Aligned_cols=212  Identities=22%  Similarity=0.314  Sum_probs=169.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC--CCceEEEcCeeccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV--EPEMVKVLGRSAFHDT  107 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~--~~G~i~i~G~~~~~~~  107 (348)
                      +|+++||+++|+         ++++|+++||+|++||+++|+||||||||||+|+|+|+++|  ++|+|.++|+++....
T Consensus         1 ~l~i~~l~~~~~---------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~   71 (500)
T TIGR02633         1 LLEMKGIVKTFG---------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN   71 (500)
T ss_pred             CEEEEeEEEEeC---------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC
Confidence            478999999994         35799999999999999999999999999999999999886  7999999997642110


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----C--CC----HHHHHHHHHHcCCCc---CccCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----G--ID----PQRRAELIKVLDIDL---SWRMHK  173 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~--~~----~~~~~~~l~~l~l~~---~~~~~~  173 (348)
                      .          ....+..++|+++....+..++..+.+ +...    .  ..    ..++.++++.+++..   ++++.+
T Consensus        72 ~----------~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  141 (500)
T TIGR02633        72 I----------RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD  141 (500)
T ss_pred             H----------HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhh
Confidence            0          001123456665554444444444332 2211    0  11    134567888888852   356899


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ .|.|||+||||++++..+||++++|++|+++
T Consensus       142 LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~l~~G~i~  220 (500)
T TIGR02633       142 YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHV  220 (500)
T ss_pred             CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe
Confidence            999999999999999999999999999999999999999999999864 5899999999999999999999999999999


Q ss_pred             eecChhHH
Q 018938          254 LAMPMDKV  261 (348)
Q Consensus       254 ~~g~~~~~  261 (348)
                      ..++++++
T Consensus       221 ~~~~~~~~  228 (500)
T TIGR02633       221 ATKDMSTM  228 (500)
T ss_pred             eecCcccC
Confidence            88877654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.7e-43  Score=330.50  Aligned_cols=216  Identities=20%  Similarity=0.256  Sum_probs=168.7

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~  102 (348)
                      .++|.++||+++|+         ++.+|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|.+
T Consensus        43 ~~~l~i~nl~~~~~---------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~  113 (305)
T PRK14264         43 DAKLSVEDLDVYYG---------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD  113 (305)
T ss_pred             CceEEEEEEEEEeC---------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence            45799999999994         3579999999999999999999999999999999999985     589999999976


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhccC--------------CCC-----HHHHHHHHHH
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGVA--------------GID-----PQRRAELIKV  162 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~~~-----~~~~~~~l~~  162 (348)
                      +.....         ....+++.++|+++...++.. +..+ +.+...              ...     .+.+.++++.
T Consensus       114 i~~~~~---------~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (305)
T PRK14264        114 IYQDGV---------NLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQ  183 (305)
T ss_pred             cccccc---------cHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHH
Confidence            432100         001223445666554333222 3332 221110              011     2235567777


Q ss_pred             cCCC------cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938          163 LDID------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  236 (348)
Q Consensus       163 l~l~------~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~  236 (348)
                      +++.      .++++.+|||||+|||+|||||+.+|+||||||||+|||+.++..+.++|+++++  +.|||++||++++
T Consensus       184 ~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~  261 (305)
T PRK14264        184 AALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQ  261 (305)
T ss_pred             cCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHH
Confidence            7763      2567899999999999999999999999999999999999999999999999864  4799999999999


Q ss_pred             hhhhCCEE-EEEcCCEEeeecChhHHHHh
Q 018938          237 LENWPSHI-VYVAHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       237 ~~~~~d~v-~~l~~G~i~~~g~~~~~~~~  264 (348)
                      +..+||++ ++|++|++++.|+++++...
T Consensus       262 i~~~~d~i~~~l~~G~i~~~g~~~~~~~~  290 (305)
T PRK14264        262 AARISDQTAVFLTGGELVEYDDTDKIFEN  290 (305)
T ss_pred             HHHhcCEEEEEecCCEEEEeCCHHHHHhC
Confidence            99999997 57899999999998887653

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=4e-43  Score=312.92  Aligned_cols=195  Identities=25%  Similarity=0.328  Sum_probs=159.0

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||++.|+         ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...    
T Consensus         1 l~i~~l~~~~~---------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----   67 (201)
T cd03231           1 LEADELTCERD---------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ----   67 (201)
T ss_pred             CEEEEEEEEeC---------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc----
Confidence            47899999994         36799999999999999999999999999999999999999999999999764211    


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMG  187 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAra  187 (348)
                              ...+++.++|.++........+..+.+ +.......+++.++++.+++.  .++++.+||||||||++||||
T Consensus        68 --------~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara  139 (201)
T cd03231          68 --------RDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARL  139 (201)
T ss_pred             --------cHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHH
Confidence                    012344566665544443344444433 221122345667888989886  367789999999999999999


Q ss_pred             HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      |+.+|++|||||||+|||+.++..+.++|+++++ .|.|+|++|||......+|++++++
T Consensus       140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchhhhhccceeEec
Confidence            9999999999999999999999999999999864 4899999999999999999999877

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-43  Score=356.82  Aligned_cols=217  Identities=19%  Similarity=0.256  Sum_probs=171.1

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-CCCceEEEcCeecccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-VEPEMVKVLGRSAFHD  106 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-~~~G~i~i~G~~~~~~  106 (348)
                      .++|+++||+++|+..      +++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus       257 ~~~l~~~~l~~~~~~~------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~  330 (506)
T PRK13549        257 EVILEVRNLTAWDPVN------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIR  330 (506)
T ss_pred             CceEEEecCccccccc------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCC
Confidence            4579999999999420      13569999999999999999999999999999999999998 4899999999764211


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCc---cccccchHHHHH-hc----cCC---CC----HHHHHHHHHHcCCC---cC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMI-FG----VAG---ID----PQRRAELIKVLDID---LS  168 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~----~~~---~~----~~~~~~~l~~l~l~---~~  168 (348)
                      ..          ....+..++|+++..   .....++..+.+ +.    ...   .+    .+++.++++.+++.   .+
T Consensus       331 ~~----------~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  400 (506)
T PRK13549        331 NP----------QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPE  400 (506)
T ss_pred             CH----------HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcc
Confidence            00          011223355554442   122233443322 11    111   11    13456788999884   36


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||++|||++++..+||++++|+
T Consensus       401 ~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~~l~  479 (506)
T PRK13549        401 LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMH  479 (506)
T ss_pred             cccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhCCEEEEEE
Confidence            78999999999999999999999999999999999999999999999999875 49999999999999999999999999


Q ss_pred             CCEEeeecChhHH
Q 018938          249 HGKLQLAMPMDKV  261 (348)
Q Consensus       249 ~G~i~~~g~~~~~  261 (348)
                      +|+++..++++++
T Consensus       480 ~G~i~~~~~~~~~  492 (506)
T PRK13549        480 EGKLKGDLINHNL  492 (506)
T ss_pred             CCEEEEEeccccC
Confidence            9999999888765

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-43  Score=354.03  Aligned_cols=210  Identities=20%  Similarity=0.335  Sum_probs=169.1

Q ss_pred             EeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccccc
Q 018938           33 INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS  112 (348)
Q Consensus        33 v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~  112 (348)
                      ++||+++|+         ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....    
T Consensus         1 ~~nl~~~~~---------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----   67 (491)
T PRK10982          1 MSNISKSFP---------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSS----   67 (491)
T ss_pred             CCceEEEeC---------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCH----
Confidence            478999994         3579999999999999999999999999999999999999999999999986421110    


Q ss_pred             CcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CC--CC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AG--ID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~--~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                            ...+++.++|++++.......++.+.+ +..   ..  .+    .+++.++++.+++.  .++++.+|||||||
T Consensus        68 ------~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q  141 (491)
T PRK10982         68 ------KEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQ  141 (491)
T ss_pred             ------HHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH
Confidence                  011223455665554444444544432 221   11  11    12456788888885  46789999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+||++++|++|+++..+++++
T Consensus       142 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  220 (491)
T PRK10982        142 MIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG  220 (491)
T ss_pred             HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence            99999999999999999999999999999999999999864 58999999999999999999999999999999998877


Q ss_pred             HH
Q 018938          261 VK  262 (348)
Q Consensus       261 ~~  262 (348)
                      +.
T Consensus       221 ~~  222 (491)
T PRK10982        221 LT  222 (491)
T ss_pred             CC
Confidence            64

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=4.4e-43  Score=312.44  Aligned_cols=187  Identities=22%  Similarity=0.266  Sum_probs=149.3

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCeecccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~~~~~~~~  108 (348)
                      |+++|++++|+         ++.+|+++||++++||+++|+|+||||||||+++|+|+  +.|++|+|.++|.++.....
T Consensus         1 l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~   71 (200)
T cd03217           1 LEIKDLHVSVG---------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP   71 (200)
T ss_pred             CeEEEEEEEeC---------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCH
Confidence            46899999994         35799999999999999999999999999999999999  47999999999986432110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL  188 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL  188 (348)
                      .          ...+..++|.++....+...+..+               .+       .....+|||||+||++|||||
T Consensus        72 ~----------~~~~~~i~~v~q~~~~~~~~~~~~---------------~l-------~~~~~~LS~G~~qrv~laral  119 (200)
T cd03217          72 E----------ERARLGIFLAFQYPPEIPGVKNAD---------------FL-------RYVNEGFSGGEKKRNEILQLL  119 (200)
T ss_pred             H----------HHhhCcEEEeecChhhccCccHHH---------------HH-------hhccccCCHHHHHHHHHHHHH
Confidence            0          001123455544322222222211               11       122368999999999999999


Q ss_pred             ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh-hCCEEEEEcCCEEeeecChh
Q 018938          189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN-WPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~-~~d~v~~l~~G~i~~~g~~~  259 (348)
                      +.+|++|||||||++||+.++..++++|+++.+ .+.|||++||+++++.. +||++++|++|++++.++.+
T Consensus       120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~  190 (200)
T cd03217         120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE  190 (200)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence            999999999999999999999999999999864 48999999999999988 79999999999999988543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=2.2e-43  Score=330.37  Aligned_cols=236  Identities=21%  Similarity=0.298  Sum_probs=188.2

Q ss_pred             CCCeEEEeceEEEecCCCC--CCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938           27 SKPTVEINALKFTYPGIDG--HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF  104 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~--~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~  104 (348)
                      ..+.|+.++|++.|+-..|  ++......++++|||++.+|+.+||+|+||||||||-.+|.+++.+ .|.|.+.|+++.
T Consensus       273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s-~G~I~F~G~~i~  351 (534)
T COG4172         273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDID  351 (534)
T ss_pred             CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc-CceEEECCcccc
Confidence            4568999999999975432  1111235699999999999999999999999999999999999865 499999998753


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCC--ccccccchHHHHHh-cc----CCCC----HHHHHHHHHHcCCC---cCcc
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFE--VPIQMDVSAEKMIF-GV----AGID----PQRRAELIKVLDID---LSWR  170 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~----~~~~----~~~~~~~l~~l~l~---~~~~  170 (348)
                      ....    ...    .-+++++..++|+  ..+.+.+++.+++. ++    +..+    .+++.++++.+|++   .+++
T Consensus       352 ~~~~----~~m----rplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY  423 (534)
T COG4172         352 GLSR----KEM----RPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY  423 (534)
T ss_pred             ccCh----hhh----hhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC
Confidence            2211    000    1133444433332  33455666666542 21    1222    23566778888987   4789


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      |+++|||||||++|||||+.+|++++||||||+||..-+.+++++|+++.+++|.+.+|||||+..+..+||+|+||++|
T Consensus       424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~G  503 (534)
T COG4172         424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDG  503 (534)
T ss_pred             CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecChhHHHHhhhhhhHH
Q 018938          251 KLQLAMPMDKVKEASKLSLMR  271 (348)
Q Consensus       251 ~i~~~g~~~~~~~~~~~~~~~  271 (348)
                      +|++.|+.+++++++...+.+
T Consensus       504 kiVE~G~~~~if~~P~~~YT~  524 (534)
T COG4172         504 KIVEQGPTEAVFANPQHEYTR  524 (534)
T ss_pred             EEeeeCCHHHHhcCCCcHHHH
Confidence            999999999999988766543

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=5.2e-43  Score=317.51  Aligned_cols=204  Identities=25%  Similarity=0.368  Sum_probs=157.2

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++|++++|++.      ++.++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+....
T Consensus         9 ~~~l~~~~l~~~~~~~------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~   82 (226)
T cd03248           9 KGIVKFQNVTFAYPTR------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE   82 (226)
T ss_pred             CceEEEEEEEEEeCCC------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcC
Confidence            4689999999999631      1246999999999999999999999999999999999999999999999997542110


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHH---------HHHHHHHHc--CCC--cCccCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQ---------RRAELIKVL--DID--LSWRMHK  173 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~~l--~l~--~~~~~~~  173 (348)
                                 ...+++.++|+++...++. .+..+.+ +........         ...++++.+  ++.  .+.++.+
T Consensus        83 -----------~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~  150 (226)
T cd03248          83 -----------HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ  150 (226)
T ss_pred             -----------HHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc
Confidence                       0112344555554433322 2333322 222111111         123456666  554  3567899


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      |||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||++|||++++.. ||++++|++|++
T Consensus       151 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~g~i  226 (226)
T cd03248         151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVER-ADQILVLDGGRI  226 (226)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence            999999999999999999999999999999999999999999999853  5899999999999964 999999999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-42  Score=322.89  Aligned_cols=219  Identities=20%  Similarity=0.235  Sum_probs=169.4

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~  102 (348)
                      ..+|+++||+++|+         ++++|+++||+|++||+++|+|+||||||||+++|+|++.|     ++|+|.++|..
T Consensus        14 ~~~l~~~~l~~~~~---------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~   84 (265)
T PRK14252         14 QQKSEVNKLNFYYG---------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN   84 (265)
T ss_pred             CceEEEEEEEEEEC---------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcc
Confidence            45799999999994         35799999999999999999999999999999999999875     68999999864


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhcc--CCCC-----HHHHHHHHHHcCCC------cC
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGV--AGID-----PQRRAELIKVLDID------LS  168 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-----~~~~~~~l~~l~l~------~~  168 (348)
                      ......     ..  ....++..++|.++....+.. +..+ +.+..  .+..     .+...++++.+++.      .+
T Consensus        85 ~~~~~~-----~~--~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~  156 (265)
T PRK14252         85 VNILSP-----EV--DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLG  156 (265)
T ss_pred             cccccc-----cc--CHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence            321000     00  001233445666554433333 3333 32221  1111     13445666666652      25


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +.+.+|||||+|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+  +.|||+|||+++++..+||++++|+
T Consensus       157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~  234 (265)
T PRK14252        157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMY  234 (265)
T ss_pred             CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEE
Confidence            67899999999999999999999999999999999999999999999999853  6899999999999999999999999


Q ss_pred             CCEEeeecChhHHHHhh
Q 018938          249 HGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~~~  265 (348)
                      +|++++.|+.+++....
T Consensus       235 ~G~i~~~g~~~~~~~~~  251 (265)
T PRK14252        235 MGELIEFGATDTIFIKP  251 (265)
T ss_pred             CCEEEEeCCHHHHHhCC
Confidence            99999999988876543

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-43  Score=340.64  Aligned_cols=214  Identities=22%  Similarity=0.377  Sum_probs=182.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .++++||+|+|++       ...++|+|+||++++||.++|+|++|||||||+++|+|.+.|++|+|.++|.++..-   
T Consensus       336 ~l~~~~vsF~y~~-------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l---  405 (573)
T COG4987         336 ALELRNVSFTYPG-------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL---  405 (573)
T ss_pred             eeeeccceeecCC-------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC---
Confidence            6999999999975       345899999999999999999999999999999999999999999999999765321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCc-------------CccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL-------------SWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------------~~~~~~LSg  176 (348)
                              -.+.++..+++..|...++.....+++....+..+.+...++++.+|+..             +.....|||
T Consensus       406 --------~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSG  477 (573)
T COG4987         406 --------DEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSG  477 (573)
T ss_pred             --------ChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCc
Confidence                    12346677778877766665555556666666677788888888888631             123467999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||+||++|||+|+++.+++||||||.|||+.+.+++++.|.+-+  .|+|+|||||++..++. ||+|++|++|+++++|
T Consensus       478 GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G  554 (573)
T COG4987         478 GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEG  554 (573)
T ss_pred             hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccccHhh-cCEEEEEECCeeeecC
Confidence            99999999999999999999999999999999999999999865  38999999999999975 8999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      ++.++..+
T Consensus       555 ~~~~Ll~~  562 (573)
T COG4987         555 THAELLAN  562 (573)
T ss_pred             CHHhhhcc
Confidence            99998763

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-42  Score=320.00  Aligned_cols=216  Identities=19%  Similarity=0.259  Sum_probs=169.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-----CCCceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-----VEPEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-----~~~G~i~i~G~~~~  104 (348)
                      +|+++||++.|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+..     |++|+|.++|.++.
T Consensus         3 ~l~~~~v~~~~~---------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~   73 (250)
T PRK14266          3 RIEVENLNTYFD---------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY   73 (250)
T ss_pred             EEEEEeEEEEeC---------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcc
Confidence            589999999994         3579999999999999999999999999999999999864     37899999997643


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CC-CCH----HHHHHHHHHcCCC------cCccC
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AG-IDP----QRRAELIKVLDID------LSWRM  171 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~l~~l~l~------~~~~~  171 (348)
                      ....     .    ....++.++|++++...+.....+++.+..  .. .+.    .++.++++.+++.      .++.+
T Consensus        74 ~~~~-----~----~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~  144 (250)
T PRK14266         74 DPAV-----D----VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSA  144 (250)
T ss_pred             cccc-----c----HHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCc
Confidence            2100     0    012334566665554433332223332221  11 111    2345667777762      25678


Q ss_pred             CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      .+||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++||+++++..+||++++|++|+
T Consensus       145 ~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~  222 (250)
T PRK14266        145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGE  222 (250)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCe
Confidence            9999999999999999999999999999999999999999999999985 3 7899999999999999999999999999


Q ss_pred             EeeecChhHHHHhh
Q 018938          252 LQLAMPMDKVKEAS  265 (348)
Q Consensus       252 i~~~g~~~~~~~~~  265 (348)
                      +++.|+++++...+
T Consensus       223 i~~~g~~~~~~~~~  236 (250)
T PRK14266        223 IIESGLTDQIFINP  236 (250)
T ss_pred             EEEeCCHHHHHhCC
Confidence            99999998886543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=4.2e-43  Score=354.76  Aligned_cols=224  Identities=17%  Similarity=0.291  Sum_probs=170.4

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCCceEEEcCe-------
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEPEMVKVLGR-------  101 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~G~i~i~G~-------  101 (348)
                      |+++||+++|+         ++++|+++||+|++||+++|+||||||||||+|+|+|++  .|++|+|.++|.       
T Consensus         1 l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~   71 (520)
T TIGR03269         1 IEVKNLTKKFD---------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY   71 (520)
T ss_pred             CEEEEEEEEEC---------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccc
Confidence            47899999994         357999999999999999999999999999999999996  699999998731       


Q ss_pred             ---------ecc-ccccccc-cCcc-ccc---chhhhhhhhhcCCC-ccccccchHH-HHHhcc--CCCC----HHHHHH
Q 018938          102 ---------SAF-HDTALTS-SGDL-SYL---GGEWRREVAFAGFE-VPIQMDVSAE-KMIFGV--AGID----PQRRAE  158 (348)
Q Consensus       102 ---------~~~-~~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~----~~~~~~  158 (348)
                               +.. .+..... .... ...   ...+++.++|+++. ...+...+.. ++.+..  .+..    .+++.+
T Consensus        72 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  151 (520)
T TIGR03269        72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD  151 (520)
T ss_pred             cccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence                     100 0000000 0000 000   01123456666554 2233333433 332221  1222    234567


Q ss_pred             HHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938          159 LIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  236 (348)
Q Consensus       159 ~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~  236 (348)
                      +++.+++.  .++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||+||||+++
T Consensus       152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~  231 (520)
T TIGR03269       152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV  231 (520)
T ss_pred             HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            88889986  3678999999999999999999999999999999999999999999999999977679999999999999


Q ss_pred             hhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          237 LENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       237 ~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      +..+||++++|++|+++..|+++++..
T Consensus       232 ~~~~~d~i~~l~~G~i~~~g~~~~~~~  258 (520)
T TIGR03269       232 IEDLSDKAIWLENGEIKEEGTPDEVVA  258 (520)
T ss_pred             HHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence            999999999999999999898887754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=5.4e-43  Score=317.51  Aligned_cols=207  Identities=22%  Similarity=0.334  Sum_probs=162.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc---CCCceEEEcCeecccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFHD  106 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~---~~~G~i~i~G~~~~~~  106 (348)
                      .+.++|++++|++.+     +.+++|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|+|.++|.++.. 
T Consensus         3 ~~~~~~~~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~-   76 (226)
T cd03234           3 VLPWWDVGLKAKNWN-----KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP-   76 (226)
T ss_pred             cceeecceeeeecCc-----cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh-
Confidence            467999999996410     13689999999999999999999999999999999999998   899999999975421 


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc----c-CCCCH----HHHHH-HHHHcCCC--cCccCCC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG----V-AGIDP----QRRAE-LIKVLDID--LSWRMHK  173 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~-~~~~~----~~~~~-~l~~l~l~--~~~~~~~  173 (348)
                                   ..+++.++|.++....+..++..+.+ +.    . .....    ....+ .++.+++.  .++.+.+
T Consensus        77 -------------~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  143 (226)
T cd03234          77 -------------DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKG  143 (226)
T ss_pred             -------------HHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccC
Confidence                         01233455555544333333443322 11    1 11111    12233 67777765  3567899


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh-hhhhhhCCEEEEEcCCEE
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i  252 (348)
                      |||||+|||+|||||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++||++ +++..+||++++|++|++
T Consensus       144 LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i  222 (226)
T cd03234         144 ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEI  222 (226)
T ss_pred             cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEE
Confidence            999999999999999999999999999999999999999999999865 489999999999 589999999999999999


Q ss_pred             eeec
Q 018938          253 QLAM  256 (348)
Q Consensus       253 ~~~g  256 (348)
                      ++.|
T Consensus       223 ~~~g  226 (226)
T cd03234         223 VYSG  226 (226)
T ss_pred             EecC
Confidence            8754

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-43  Score=354.74  Aligned_cols=209  Identities=15%  Similarity=0.249  Sum_probs=166.9

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++|+++.|.           .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus       263 ~~~l~~~~l~~~~~-----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~  331 (510)
T PRK09700        263 ETVFEVRNVTSRDR-----------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRS  331 (510)
T ss_pred             CcEEEEeCccccCC-----------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCC
Confidence            35899999998762           3899999999999999999999999999999999999999999999997642110


Q ss_pred             cccccCcccccchhhhhhhhhcCCCc---cccccchHHHHH-hccC----------CC-C----HHHHHHHHHHcCCC--
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMI-FGVA----------GI-D----PQRRAELIKVLDID--  166 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~----------~~-~----~~~~~~~l~~l~l~--  166 (348)
                      .          ....++.++|+++..   .+...+++.+.+ +...          +. .    ..++.++++.+++.  
T Consensus       332 ~----------~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  401 (510)
T PRK09700        332 P----------LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCH  401 (510)
T ss_pred             H----------HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCC
Confidence            0          011223456665542   233334444332 2110          00 1    12356788889984  


Q ss_pred             -cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938          167 -LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV  245 (348)
Q Consensus       167 -~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~  245 (348)
                       .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+||+++
T Consensus       402 ~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~  480 (510)
T PRK09700        402 SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIA  480 (510)
T ss_pred             CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEE
Confidence             3678999999999999999999999999999999999999999999999999875 59999999999999999999999


Q ss_pred             EEcCCEEeeecCh
Q 018938          246 YVAHGKLQLAMPM  258 (348)
Q Consensus       246 ~l~~G~i~~~g~~  258 (348)
                      +|++|+++..++.
T Consensus       481 ~l~~G~i~~~~~~  493 (510)
T PRK09700        481 VFCEGRLTQILTN  493 (510)
T ss_pred             EEECCEEEEEecC
Confidence            9999999987765

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-43  Score=300.33  Aligned_cols=208  Identities=24%  Similarity=0.402  Sum_probs=170.7

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      +++.+++++.+|++       ....+|+|+|++|.+||.++++|||||||||||++++|+..|..|+|.++|..+.....
T Consensus         2 ~~l~~~~~sl~y~g-------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga   74 (259)
T COG4525           2 CMLNVSHLSLSYEG-------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA   74 (259)
T ss_pred             ceeehhheEEecCC-------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc
Confidence            46889999999964       12459999999999999999999999999999999999999999999999986532211


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchH-HHHHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                           +         +  +.++|+..+.+++++ ++..+++  .+..+    +.+.+.+..+|+.  .++++.+||||||
T Consensus        75 -----e---------r--gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmr  138 (259)
T COG4525          75 -----E---------R--GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMR  138 (259)
T ss_pred             -----c---------c--eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHH
Confidence                 1         1  222234444444443 3444543  34443    3455677888885  4678999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEeeecC
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQLAMP  257 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~~~g~  257 (348)
                      |||.|||||+.+|++|+||||+++||.-+++.+.++|.++.++.|+.+++||||++++.-+++++++|+.  |+|+..-+
T Consensus       139 QRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~  218 (259)
T COG4525         139 QRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP  218 (259)
T ss_pred             HHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999984  79988766


Q ss_pred             hh
Q 018938          258 MD  259 (348)
Q Consensus       258 ~~  259 (348)
                      ++
T Consensus       219 ~d  220 (259)
T COG4525         219 LD  220 (259)
T ss_pred             CC
Confidence            65

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=5.9e-43  Score=307.13  Aligned_cols=177  Identities=21%  Similarity=0.346  Sum_probs=143.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++|++++|             +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus         3 ~~l~~~~l~~~~-------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~   69 (182)
T cd03215           3 PVLEVRGLSVKG-------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSP   69 (182)
T ss_pred             cEEEEeccEEEe-------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCH
Confidence            479999999987             7999999999999999999999999999999999999999999999976422110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCc---cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQIC  185 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lA  185 (348)
                                ....++.++|.+++.   .+....+..+.+...            .           .||||||||++||
T Consensus        70 ----------~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~------------~-----------~LS~G~~qrl~la  116 (182)
T cd03215          70 ----------RDAIRAGIAYVPEDRKREGLVLDLSVAENIALS------------S-----------LLSGGNQQKVVLA  116 (182)
T ss_pred             ----------HHHHhCCeEEecCCcccCcccCCCcHHHHHHHH------------h-----------hcCHHHHHHHHHH
Confidence                      001233455554432   122222332221100            0           0999999999999


Q ss_pred             HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      |||+.+|++|||||||+|||+.++..+.++|+++.+ .|.|||++||+++++..+||++++|++|++
T Consensus       117 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         117 RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            999999999999999999999999999999999865 489999999999999999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=8.4e-43  Score=320.68  Aligned_cols=197  Identities=23%  Similarity=0.344  Sum_probs=157.1

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV  133 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (348)
                      +|+++||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|.++....           ...++..++|+++..
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~-----------~~~~~~~i~~v~q~~   78 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWS-----------AAELARHRAYLSQQQ   78 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCC-----------HHHHhhheEEecccC
Confidence            7999999999999999999999999999999999985 5999999998643211           011223355655443


Q ss_pred             cccccchHHHHH-hccC-CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHcc-------CCcEEEee
Q 018938          134 PIQMDVSAEKMI-FGVA-GID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK-------PFKVLLLD  198 (348)
Q Consensus       134 ~~~~~~~~~~~~-~~~~-~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~-------~P~lLlLD  198 (348)
                      ......+..+++ +... ...    .+++.++++.+++.  .++++.+||||||||++|||||+.       +|++||||
T Consensus        79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD  158 (248)
T PRK03695         79 TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD  158 (248)
T ss_pred             ccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence            333334444332 2211 111    23456788888885  367899999999999999999997       67999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          199 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       199 EPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      |||+|||+.++..+.++|+++.+ .|.|||++|||++++..+||++++|++|+++..|+.+++..
T Consensus       159 EPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  222 (248)
T PRK03695        159 EPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT  222 (248)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence            99999999999999999999865 48999999999999999999999999999999998877653

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7e-43  Score=342.32  Aligned_cols=214  Identities=24%  Similarity=0.385  Sum_probs=181.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .++++||++.|+.        ++++++|+||++++|+.++|+|+||||||||+++|+|+.+|+.|+|.++|.+...-   
T Consensus       320 ei~~~~l~~~y~~--------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l---  388 (559)
T COG4988         320 EISLENLSFRYPD--------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL---  388 (559)
T ss_pred             eeeecceEEecCC--------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcccccc---
Confidence            3555699999974        34899999999999999999999999999999999999999999999999764221   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--------cCc----cCCCCCHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--------LSW----RMHKVSDG  177 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--------~~~----~~~~LSgG  177 (348)
                              ....|+++++|+++++.++.....+++.++....+++.+.++++..++.        .+.    ....||||
T Consensus       389 --------~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgG  460 (559)
T COG4988         389 --------SPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGG  460 (559)
T ss_pred             --------CHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHH
Confidence                    1246888999998887777766667777766666677777777776542        122    23459999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |+|||+|||||+++++++||||||++||.++...+.+.|.++.+  ++|||++||++..+.. ||+|++|++|++++.|.
T Consensus       461 Q~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~  537 (559)
T COG4988         461 QAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGT  537 (559)
T ss_pred             HHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecCCceeccCC
Confidence            99999999999999999999999999999999999999999875  5899999999999876 89999999999999999


Q ss_pred             hhHHHHhh
Q 018938          258 MDKVKEAS  265 (348)
Q Consensus       258 ~~~~~~~~  265 (348)
                      .+++.++.
T Consensus       538 ~~~L~~~~  545 (559)
T COG4988         538 HEELSEKQ  545 (559)
T ss_pred             HHHHhhcC
Confidence            99987654

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=6e-43  Score=305.97  Aligned_cols=178  Identities=24%  Similarity=0.424  Sum_probs=145.3

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|++       ...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+...    
T Consensus         1 i~~~~~~~~~~~-------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----   69 (178)
T cd03247           1 LSINNVSFSYPE-------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL----   69 (178)
T ss_pred             CEEEEEEEEeCC-------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH----
Confidence            478999999953       123699999999999999999999999999999999999999999999999753210    


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~  190 (348)
                              ...+++.++|+++...++. .+..+.               +          +.+|||||+||++|||||+.
T Consensus        70 --------~~~~~~~i~~~~q~~~~~~-~tv~~~---------------i----------~~~LS~G~~qrv~laral~~  115 (178)
T cd03247          70 --------EKALSSLISVLNQRPYLFD-TTLRNN---------------L----------GRRFSGGERQRLALARILLQ  115 (178)
T ss_pred             --------HHHHHhhEEEEccCCeeec-ccHHHh---------------h----------cccCCHHHHHHHHHHHHHhc
Confidence                    1123344566544332211 111111               0          67999999999999999999


Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      +|++|||||||++||+.++..+++.|.++. + +.|||++||+++++. .||++++|++|++++.|
T Consensus       116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         116 DAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGIE-HMDKILFLENGKIIMQG  178 (178)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence            999999999999999999999999999984 3 799999999999996 69999999999998653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=4.1e-43  Score=313.63  Aligned_cols=197  Identities=21%  Similarity=0.361  Sum_probs=152.9

Q ss_pred             EeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccccc
Q 018938           33 INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS  112 (348)
Q Consensus        33 v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~  112 (348)
                      ++||++.|+         ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......   
T Consensus         1 i~~l~~~~~---------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~---   68 (206)
T TIGR03608         1 LKNISKKFG---------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSK---   68 (206)
T ss_pred             CcceEEEEC---------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchh---
Confidence            479999994         35799999999999999999999999999999999999999999999999864210000   


Q ss_pred             CcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938          113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~  183 (348)
                       .   .....++.++|+++....+...+..+.+ +..  .+..    .+++.++++.+++.  .++++.+|||||+||++
T Consensus        69 -~---~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~  144 (206)
T TIGR03608        69 -K---ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVA  144 (206)
T ss_pred             -h---HHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHH
Confidence             0   0001233455655444333334443322 211  1111    23456788888885  36788999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      |||||+.+|++|||||||+|||+.++..+.++|+++.++ |.|||++||+++++ .+||++++|
T Consensus       145 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       145 LARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             HHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEeC
Confidence            999999999999999999999999999999999998754 89999999999976 589999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=9.1e-43  Score=308.98  Aligned_cols=188  Identities=21%  Similarity=0.371  Sum_probs=149.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCCceEEEcCeeccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~G~i~i~G~~~~~~~  107 (348)
                      .|+++||+++|++..+   ...+++|+++||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++... 
T Consensus         3 ~l~~~~ls~~~~~~~~---~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~-   78 (194)
T cd03213           3 TLSFRNLTVTVKSSPS---KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR-   78 (194)
T ss_pred             EEEEEeeEEEEecCCC---cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH-
Confidence            5899999999952000   00257999999999999999999999999999999999999  99999999999864210 


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG  187 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAra  187 (348)
                                   .+++.++|.++....+...+..+.+.            +...        ..+|||||+||++||||
T Consensus        79 -------------~~~~~i~~~~q~~~~~~~~t~~~~i~------------~~~~--------~~~LS~G~~qrv~lara  125 (194)
T cd03213          79 -------------SFRKIIGYVPQDDILHPTLTVRETLM------------FAAK--------LRGLSGGERKRVSIALE  125 (194)
T ss_pred             -------------hhhheEEEccCcccCCCCCcHHHHHH------------HHHH--------hccCCHHHHHHHHHHHH
Confidence                         12334555544433333333332221            0000        11899999999999999


Q ss_pred             HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEcCCEEeee
Q 018938          188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |+.+|++|||||||++||+.++..+.++|+++.+ .|.|||++|||++ ++..+||++++|++|++++.
T Consensus       126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~  193 (194)
T cd03213         126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF  193 (194)
T ss_pred             HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence            9999999999999999999999999999999865 4899999999996 78889999999999999764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.2e-42  Score=309.58  Aligned_cols=194  Identities=25%  Similarity=0.336  Sum_probs=156.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||++.|+         +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+... .  
T Consensus         2 ~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~--   69 (207)
T PRK13539          2 MLEGEDLACVRG---------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P--   69 (207)
T ss_pred             EEEEEeEEEEEC---------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h--
Confidence            689999999994         3579999999999999999999999999999999999999999999999975310 0  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQI  184 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l  184 (348)
                                 .++..++|++++.......+..+.+ +.  ........+.++++.+++.  .+.++.+||||||||++|
T Consensus        70 -----------~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l  138 (207)
T PRK13539         70 -----------DVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVAL  138 (207)
T ss_pred             -----------hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHH
Confidence                       0233455554443333334443332 11  1122344567888989885  366789999999999999


Q ss_pred             HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||+++++..  |+++.+..
T Consensus       139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~--~~~~~~~~  200 (207)
T PRK13539        139 ARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPLGLPG--ARELDLGP  200 (207)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCchhhcc--CcEEeecC
Confidence            9999999999999999999999999999999999865 48999999999999986  88887743

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=3.5e-42  Score=318.13  Aligned_cols=214  Identities=14%  Similarity=0.169  Sum_probs=163.3

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      ...|+++|++++|+.       ....+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++....
T Consensus        17 ~~~i~~~~l~~~~~~-------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~   89 (257)
T cd03288          17 GGEIKIHDLCVRYEN-------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP   89 (257)
T ss_pred             CceEEEEEEEEEeCC-------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC
Confidence            357999999999953       1257999999999999999999999999999999999999999999999998643211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHH---------HHc--CCC--cCccCCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELI---------KVL--DID--LSWRMHKV  174 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~l--~l~--~~~~~~~L  174 (348)
                      .           ..+++.++|+++...++. .+..+..............+++         +.+  +++  .+..+.+|
T Consensus        90 ~-----------~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~L  157 (257)
T cd03288          90 L-----------HTLRSRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENF  157 (257)
T ss_pred             H-----------HHHhhhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcC
Confidence            0           122344556554433322 2333222111111122222222         222  222  23456899


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||||+||++|||||+.+|++|||||||+|||+.++..++++++++.  .+.|||++||+++.+.. ||++++|++|++++
T Consensus       158 S~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~  234 (257)
T cd03288         158 SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVSTILD-ADLVLVLSRGILVE  234 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHHHHh-CCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999864  38999999999999986 99999999999999


Q ss_pred             ecChhHHHH
Q 018938          255 AMPMDKVKE  263 (348)
Q Consensus       255 ~g~~~~~~~  263 (348)
                      .|+++++.+
T Consensus       235 ~g~~~~~~~  243 (257)
T cd03288         235 CDTPENLLA  243 (257)
T ss_pred             eCCHHHHHh
Confidence            999888764

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.1e-42  Score=360.28  Aligned_cols=211  Identities=21%  Similarity=0.285  Sum_probs=176.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|++       .++++|+|+||+|++||.++|+|+||||||||+|+|+|++.|++|+|.++|.++..-   
T Consensus       451 ~I~~~nvsf~Y~~-------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~---  520 (686)
T TIGR03797       451 AIEVDRVTFRYRP-------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL---  520 (686)
T ss_pred             eEEEEEEEEEcCC-------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC---
Confidence            5999999999963       246799999999999999999999999999999999999999999999999875321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg  176 (348)
                              ....+++.+++++|+..++.....+++.++.+ .+.++..++++..++.         .+    .....|||
T Consensus       521 --------~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG  591 (686)
T TIGR03797       521 --------DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG  591 (686)
T ss_pred             --------CHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence                    12346778889888777665544555555544 5666677777776652         11    22357999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+++|++||||||||+||+.+.+.+.+.|+++    ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus       592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G  666 (686)
T TIGR03797       592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQG  666 (686)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHc-CCEEEEEECCEEEEEC
Confidence            9999999999999999999999999999999999999999764    5799999999998865 9999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +.+++.+.
T Consensus       667 ~~~~Ll~~  674 (686)
T TIGR03797       667 TYDELMAR  674 (686)
T ss_pred             CHHHHHhC
Confidence            99988753

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-43  Score=348.31  Aligned_cols=217  Identities=21%  Similarity=0.330  Sum_probs=184.7

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      -.|+++||+|.|+..      .+.++|+|+||+|+|||++|||||||+||||+.++|..++.|++|+|.+||.++.+-  
T Consensus       464 G~IeF~~VsFaYP~R------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~--  535 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTR------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI--  535 (716)
T ss_pred             ceEEEEEeeeecCCC------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc--
Confidence            369999999999863      357899999999999999999999999999999999999999999999999976432  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcC-------CC--c----CccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-------ID--L----SWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~--~----~~~~~~LS  175 (348)
                               ....+++.++++.|++.++.....+++.++....+.+++..+.+.-+       ++  .    ..+..+||
T Consensus       536 ---------~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS  606 (716)
T KOG0058|consen  536 ---------NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS  606 (716)
T ss_pred             ---------CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence                     12346788999998888777766778888877666665554443322       11  1    23456899


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||+||||||+.+|.||||||.||+||.++...+.+.|.+..+  ++|||+|.|.+..+++ ||+|+++++|++++.
T Consensus       607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~  683 (716)
T KOG0058|consen  607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEM  683 (716)
T ss_pred             chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhh-ccEEEEEcCCeEEec
Confidence            9999999999999999999999999999999999999999998764  5899999999999975 999999999999999


Q ss_pred             cChhHHHHhh
Q 018938          256 MPMDKVKEAS  265 (348)
Q Consensus       256 g~~~~~~~~~  265 (348)
                      |+.+++.+.+
T Consensus       684 G~h~eLl~~~  693 (716)
T KOG0058|consen  684 GTHDELLSKP  693 (716)
T ss_pred             ccHHHHhhCc
Confidence            9999988754

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2e-42  Score=354.70  Aligned_cols=212  Identities=24%  Similarity=0.352  Sum_probs=176.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||++.|.+        ++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++|.++..-   
T Consensus       349 ~i~~~~vsf~~~~--------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~---  416 (588)
T PRK11174        349 TIEAEDLEILSPD--------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELREL---  416 (588)
T ss_pred             eEEEEeeEEeccC--------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccC---
Confidence            5999999987742        367999999999999999999999999999999999999 9999999999865321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg  176 (348)
                              ....+++.++|++|++.++.....+++.++.+..+.++..++++..++.         .+    .....|||
T Consensus       417 --------~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSG  488 (588)
T PRK11174        417 --------DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV  488 (588)
T ss_pred             --------CHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCH
Confidence                    1234677889998887766655555665654555666666666655431         12    23467999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+++|++||||||||+||+++.+.+.+.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus       489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G  565 (588)
T PRK11174        489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQG  565 (588)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHHH-hCCEEEEEeCCeEeecC
Confidence            99999999999999999999999999999999999999999874  4789999999999886 59999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +.+++.+.
T Consensus       566 ~~~eL~~~  573 (588)
T PRK11174        566 DYAELSQA  573 (588)
T ss_pred             CHHHHHhc
Confidence            99988754

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.7e-43  Score=350.91  Aligned_cols=216  Identities=19%  Similarity=0.219  Sum_probs=168.6

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-CCceEEEcCeecccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-EPEMVKVLGRSAFHD  106 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-~~G~i~i~G~~~~~~  106 (348)
                      .++|+++|++++|++.      ++..+|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus       255 ~~~l~~~~l~~~~~~~------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~  328 (500)
T TIGR02633       255 DVILEARNLTCWDVIN------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR  328 (500)
T ss_pred             CceEEEeCCccccccc------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC
Confidence            3479999999999420      135699999999999999999999999999999999999985 799999999764211


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCc---cccccchHHHHH-hc----cC---CCC----HHHHHHHHHHcCCC---cC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMI-FG----VA---GID----PQRRAELIKVLDID---LS  168 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~----~~---~~~----~~~~~~~l~~l~l~---~~  168 (348)
                      ..          ....++.++|+++..   .....++..+.+ +.    ..   ...    ..++.++++.+++.   .+
T Consensus       329 ~~----------~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  398 (500)
T TIGR02633       329 NP----------AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPF  398 (500)
T ss_pred             CH----------HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCcc
Confidence            00          011233455554442   122333333322 11    10   111    13456788889884   36


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++|||++++..+||++++|+
T Consensus       399 ~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~v~~l~  477 (500)
T TIGR02633       399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIG  477 (500)
T ss_pred             CccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEE
Confidence            78999999999999999999999999999999999999999999999999875 48999999999999999999999999


Q ss_pred             CCEEeeecChhH
Q 018938          249 HGKLQLAMPMDK  260 (348)
Q Consensus       249 ~G~i~~~g~~~~  260 (348)
                      +|+++...+.++
T Consensus       478 ~G~i~~~~~~~~  489 (500)
T TIGR02633       478 EGKLKGDFVNHA  489 (500)
T ss_pred             CCEEEEEEcccc
Confidence            999998776554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=2.3e-42  Score=361.31  Aligned_cols=213  Identities=25%  Similarity=0.312  Sum_probs=176.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+|+|++       .++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++..-  
T Consensus       476 ~~I~~~~vsf~y~~-------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~--  546 (710)
T TIGR03796       476 GYVELRNITFGYSP-------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEI--  546 (710)
T ss_pred             CeEEEEEEEEecCC-------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHC--
Confidence            35999999999964       246799999999999999999999999999999999999999999999999865321  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LS  175 (348)
                               ....+++.+++++|+..++.....+++.++.+..+.++..++++..++.         .    ......||
T Consensus       547 ---------~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS  617 (710)
T TIGR03796       547 ---------PREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS  617 (710)
T ss_pred             ---------CHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence                     1234677888988877666554445554443445566666666665542         1    12346799


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+++|++||||||||+||+.+...+.+.|++    .++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus       618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~  692 (710)
T TIGR03796       618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQR  692 (710)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEe
Confidence            9999999999999999999999999999999999999999975    37999999999998865 999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+.+++.+.
T Consensus       693 G~~~~Ll~~  701 (710)
T TIGR03796       693 GTHEELWAV  701 (710)
T ss_pred             cCHHHHHHc
Confidence            999998753

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=2.3e-42  Score=305.86  Aligned_cols=186  Identities=25%  Similarity=0.359  Sum_probs=148.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCCceEEEcCeeccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~G~i~i~G~~~~~~~  107 (348)
                      .|+++|+++.|++..     +++++|+++||+|++||+++|+||||||||||+++|+|+.  .|++|+|.++|+++.   
T Consensus         3 ~l~~~~l~~~~~~~~-----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---   74 (192)
T cd03232           3 VLTWKNLNYTVPVKG-----GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---   74 (192)
T ss_pred             EEEEeeeEEEecCCC-----CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---
Confidence            689999999995310     1257999999999999999999999999999999999986  479999999997542   


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG  187 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAra  187 (348)
                                  ..+++.++|.++....+...+..+++..         ...   +        .+|||||+|||+||||
T Consensus        75 ------------~~~~~~i~~~~q~~~~~~~~tv~~~l~~---------~~~---~--------~~LSgGe~qrv~la~a  122 (192)
T cd03232          75 ------------KNFQRSTGYVEQQDVHSPNLTVREALRF---------SAL---L--------RGLSVEQRKRLTIGVE  122 (192)
T ss_pred             ------------HHhhhceEEecccCccccCCcHHHHHHH---------HHH---H--------hcCCHHHhHHHHHHHH
Confidence                        1123345555444333333343333210         000   0        1899999999999999


Q ss_pred             HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEcC-CEEeeec
Q 018938          188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVAH-GKLQLAM  256 (348)
Q Consensus       188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g  256 (348)
                      |+.+|++|||||||++||+.++..+++.|+++.+ .|.|||++||+++ .+..+||++++|++ |++++.|
T Consensus       123 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g  192 (192)
T cd03232         123 LAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG  192 (192)
T ss_pred             HhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence            9999999999999999999999999999999864 5899999999998 47889999999999 9998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-42  Score=288.75  Aligned_cols=219  Identities=23%  Similarity=0.348  Sum_probs=181.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|.++++++.|+         ...+|-||+|+.++||.+.++||||||||||+|.+.-+..|.+|+..+.|........ 
T Consensus         2 sirv~~in~~yg---------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~-   71 (242)
T COG4161           2 SIQLNGINCFYG---------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT-   71 (242)
T ss_pred             ceEEcccccccc---------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccC-
Confidence            489999999994         5789999999999999999999999999999999999999999999988764321111 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHh-c---cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-G---VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                      .  .  ......+++.+++++++..+++.+++.+.+. .   ..+.++    .++.++++.+.+.  .++.|-.|||||+
T Consensus        72 ~--~--~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqq  147 (242)
T COG4161          72 P--S--DKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQ  147 (242)
T ss_pred             c--c--HHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchh
Confidence            0  0  1122356788898888777777777654432 1   122232    3456788888875  4788999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|++|++||||++|||+-..++.++|+++. +.|.|-++|||..+.+.+.+.+|+.|++|+|++.|+..
T Consensus       148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~-~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~  226 (242)
T COG4161         148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS  226 (242)
T ss_pred             hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence            99999999999999999999999999999999999999986 56999999999999999999999999999999999987


Q ss_pred             HHHH
Q 018938          260 KVKE  263 (348)
Q Consensus       260 ~~~~  263 (348)
                      -+..
T Consensus       227 ~ft~  230 (242)
T COG4161         227 CFTE  230 (242)
T ss_pred             hccC
Confidence            6653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-42  Score=317.56  Aligned_cols=210  Identities=20%  Similarity=0.274  Sum_probs=163.0

Q ss_pred             eEEEeceEEEecCCCC-----------CCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE
Q 018938           30 TVEINALKFTYPGIDG-----------HPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV   98 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~-----------~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i   98 (348)
                      .|+++||++.|.....           ....+.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            5899999999965211           00123467999999999999999999999999999999999999999999999


Q ss_pred             cCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCCCH----HHHHHHHHHcCCC--cCc
Q 018938           99 LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGIDP----QRRAELIKVLDID--LSW  169 (348)
Q Consensus        99 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~----~~~~~~l~~l~l~--~~~  169 (348)
                      +|...+...                 ...+.       ...+..+ +.+.  ..+...    .....+++.+++.  .++
T Consensus        84 ~g~~~~~~~-----------------~~~~~-------~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  139 (264)
T PRK13546         84 NGEVSVIAI-----------------SAGLS-------GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ  139 (264)
T ss_pred             CCEEeEEec-----------------ccCCC-------CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC
Confidence            986311000                 00000       0111111 1110  111222    1234566666765  366


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      .+.+|||||+|||+|||||+.+|++|||||||+|||+.++..++++|.++. +.|.|||++||+++++..+||++++|++
T Consensus       140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~-~~g~tiIiisH~~~~i~~~~d~i~~l~~  218 (264)
T PRK13546        140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK-EQNKTIFFVSHNLGQVRQFCTKIAWIEG  218 (264)
T ss_pred             CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHcCEEEEEEC
Confidence            789999999999999999999999999999999999999999999999985 4589999999999999999999999999


Q ss_pred             CEEeeecChhHHHHh
Q 018938          250 GKLQLAMPMDKVKEA  264 (348)
Q Consensus       250 G~i~~~g~~~~~~~~  264 (348)
                      |+++..|+.+++...
T Consensus       219 G~i~~~g~~~~~~~~  233 (264)
T PRK13546        219 GKLKDYGELDDVLPK  233 (264)
T ss_pred             CEEEEeCCHHHHHHH
Confidence            999999998887653

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=3.6e-42  Score=352.45  Aligned_cols=214  Identities=22%  Similarity=0.315  Sum_probs=176.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|++       +++++|+|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.++|.++..-   
T Consensus       341 ~i~~~~vsf~y~~-------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~---  410 (582)
T PRK11176        341 DIEFRNVTFTYPG-------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY---  410 (582)
T ss_pred             eEEEEEEEEecCC-------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhc---
Confidence            5999999999963       246799999999999999999999999999999999999999999999999864221   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCC-CCHHHHHHHHHHcCCC---------cC----ccCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRRAELIKVLDID---------LS----WRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~---------~~----~~~~~LS  175 (348)
                              ....+++.++|++|+..++.....+++.++... .+.++..++++..++.         .+    .....||
T Consensus       411 --------~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LS  482 (582)
T PRK11176        411 --------TLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS  482 (582)
T ss_pred             --------CHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCC
Confidence                    112456778888887766655445555554332 4566666666665532         12    2235699


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+++|++||||||||+||+.+...+++.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.
T Consensus       483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~  559 (582)
T PRK11176        483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIE-KADEILVVEDGEIVER  559 (582)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999874  3789999999998875 5999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+.+++.+.
T Consensus       560 g~~~~l~~~  568 (582)
T PRK11176        560 GTHAELLAQ  568 (582)
T ss_pred             CCHHHHHhC
Confidence            999988754

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=3.3e-42  Score=381.72  Aligned_cols=218  Identities=21%  Similarity=0.338  Sum_probs=182.8

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      ...+|+++||+|+|++       +.+.+|+|+||+|++||++||+||||||||||+|+|+|++.|++|+|.++|.++...
T Consensus      1934 ~~~~L~v~nLsK~Y~~-------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~ 2006 (2272)
T TIGR01257      1934 KTDILRLNELTKVYSG-------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN 2006 (2272)
T ss_pred             CCceEEEEEEEEEECC-------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch
Confidence            3458999999999952       135799999999999999999999999999999999999999999999999865211


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCCCH----HHHHHHHHHcCCC--cCccCCCCCHH
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGIDP----QRRAELIKVLDID--LSWRMHKVSDG  177 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgG  177 (348)
                                  ....++.++|.++...+...+++.+.+.   ...+...    +.+.++++.+++.  .++++++||||
T Consensus      2007 ------------~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGG 2074 (2272)
T TIGR01257      2007 ------------ISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGG 2074 (2272)
T ss_pred             ------------HHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHH
Confidence                        0123456778777666666667665432   1223222    2345678888886  47789999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+||+||+.+|+||||||||+||||.+++.++++|++++++ |+|||++||++++++.+|||+++|++|+++..|+
T Consensus      2075 qKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257      2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence            999999999999999999999999999999999999999998654 8999999999999999999999999999999999


Q ss_pred             hhHHHHh
Q 018938          258 MDKVKEA  264 (348)
Q Consensus       258 ~~~~~~~  264 (348)
                      ++++...
T Consensus      2154 ~q~Lk~~ 2160 (2272)
T TIGR01257      2154 IQHLKSK 2160 (2272)
T ss_pred             HHHHHHH
Confidence            9998654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=4.9e-42  Score=350.63  Aligned_cols=215  Identities=21%  Similarity=0.381  Sum_probs=179.0

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++|++|+|++       +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..-  
T Consensus       337 ~~i~~~~v~f~y~~-------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~--  407 (574)
T PRK11160        337 VSLTLNNVSFTYPD-------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADY--  407 (574)
T ss_pred             CeEEEEEEEEECCC-------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC--
Confidence            46999999999963       235799999999999999999999999999999999999999999999999864321  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCc--C----------ccCCCCCH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL--S----------WRMHKVSD  176 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~----------~~~~~LSg  176 (348)
                               ....+++.+++++|+..++.....+++.++.+..+.+++.++++..++..  .          .....|||
T Consensus       408 ---------~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSg  478 (574)
T PRK11160        408 ---------SEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSG  478 (574)
T ss_pred             ---------CHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCH
Confidence                     11345677888877766655544455545544456677777888777641  1          13467999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+++|++|||||||++||+.+.+.+.+.|.++.  .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus       479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g  555 (574)
T PRK11160        479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQG  555 (574)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeC
Confidence            99999999999999999999999999999999999999999874  37899999999999865 9999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +.+++.+.
T Consensus       556 ~~~~l~~~  563 (574)
T PRK11160        556 THQELLAQ  563 (574)
T ss_pred             CHHHHHhc
Confidence            99988754

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=6.7e-42  Score=356.95  Aligned_cols=214  Identities=24%  Similarity=0.383  Sum_probs=177.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+|+|++       +.+++|+|+||+|++||.++|+|+||||||||+|+|+|++.|++|+|.++|.++..-  
T Consensus       462 ~~I~~~~vsf~Y~~-------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~--  532 (694)
T TIGR03375       462 GEIEFRNVSFAYPG-------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI--  532 (694)
T ss_pred             ceEEEEEEEEEeCC-------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC--
Confidence            35999999999963       245799999999999999999999999999999999999999999999999865321  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LS  175 (348)
                               ....+++.+++++|+..++.....+++.++.+..+.++..++++..++.         .    ......||
T Consensus       533 ---------~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS  603 (694)
T TIGR03375       533 ---------DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS  603 (694)
T ss_pred             ---------CHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence                     1134677888888877666554445555554445666666666665541         1    23346799


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+.+|++||||||||+||+.+...+.+.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.
T Consensus       604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~  680 (694)
T TIGR03375       604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVAD  680 (694)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHH-hCCEEEEEeCCEEEee
Confidence            999999999999999999999999999999999999999999875  3789999999999875 6999999999999999


Q ss_pred             cChhHHHH
Q 018938          256 MPMDKVKE  263 (348)
Q Consensus       256 g~~~~~~~  263 (348)
                      |+.+++.+
T Consensus       681 G~~~eLl~  688 (694)
T TIGR03375       681 GPKDQVLE  688 (694)
T ss_pred             CCHHHHHH
Confidence            99988764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.6e-42  Score=306.47  Aligned_cols=193  Identities=24%  Similarity=0.366  Sum_probs=153.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++|++++|+         +.++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+...   
T Consensus         1 ml~~~~l~~~~~---------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~---   68 (200)
T PRK13540          1 MLDVIELDFDYH---------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD---   68 (200)
T ss_pred             CEEEEEEEEEeC---------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC---
Confidence            488999999994         35799999999999999999999999999999999999999999999999754210   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-CCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC  185 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA  185 (348)
                               ...+++.++|.++....+...+..+.. +.. .......+.++++.+++.  .++++.+|||||+||++||
T Consensus        69 ---------~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~la  139 (200)
T PRK13540         69 ---------LCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALL  139 (200)
T ss_pred             ---------HHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHH
Confidence                     012344566665544333334444332 221 111234567788888875  3667889999999999999


Q ss_pred             HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938          186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV  245 (348)
Q Consensus       186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~  245 (348)
                      |||+.+|++|||||||++||+.++..+.++|+++.+ .|.|||++||+.+++.. ||.-.
T Consensus       140 ral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~-~d~~~  197 (200)
T PRK13540        140 RLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPLNK-ADYEE  197 (200)
T ss_pred             HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhccc-cchhh
Confidence            999999999999999999999999999999999854 58999999999999865 88654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-41  Score=344.78  Aligned_cols=210  Identities=23%  Similarity=0.307  Sum_probs=157.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+++|+         ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|...      
T Consensus         1 ml~i~~ls~~~~---------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~------   65 (530)
T PRK15064          1 MLSTANITMQFG---------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNER------   65 (530)
T ss_pred             CEEEEEEEEEeC---------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE------
Confidence            489999999994         36799999999999999999999999999999999999999999999986310      


Q ss_pred             cccCcccccchh--------hhhhhhhc--------------CCC--ccccccchHHHH---HhccCCCC-HHHHHHHHH
Q 018938          110 TSSGDLSYLGGE--------WRREVAFA--------------GFE--VPIQMDVSAEKM---IFGVAGID-PQRRAELIK  161 (348)
Q Consensus       110 ~~~~~~~~~~~~--------~~~~~~~~--------------~~~--~~~~~~~~~~~~---~~~~~~~~-~~~~~~~l~  161 (348)
                           +.++.+.        ....+.+.              ...  ..........+.   .....+.. ..++.++++
T Consensus        66 -----i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  140 (530)
T PRK15064         66 -----LGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLL  140 (530)
T ss_pred             -----EEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence                 1111110        00000000              000  000000001100   00011111 245667888


Q ss_pred             HcCCCc---CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938          162 VLDIDL---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       162 ~l~l~~---~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                      .+++..   ++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|.+    .|.|||+||||++++.
T Consensus       141 ~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~  216 (530)
T PRK15064        141 GVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLN  216 (530)
T ss_pred             hCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHH
Confidence            899852   357899999999999999999999999999999999999999999999863    4889999999999999


Q ss_pred             hhCCEEEEEcCCEEe-eecChhHHHH
Q 018938          239 NWPSHIVYVAHGKLQ-LAMPMDKVKE  263 (348)
Q Consensus       239 ~~~d~v~~l~~G~i~-~~g~~~~~~~  263 (348)
                      .+||++++|++|+++ +.|+++++.+
T Consensus       217 ~~~d~i~~l~~g~i~~~~g~~~~~~~  242 (530)
T PRK15064        217 SVCTHMADLDYGELRVYPGNYDEYMT  242 (530)
T ss_pred             hhcceEEEEeCCEEEEecCCHHHHHH
Confidence            999999999999994 7898888764

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-42  Score=291.03  Aligned_cols=203  Identities=21%  Similarity=0.357  Sum_probs=173.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .++++++.+.-         ++.++|+++||++.+||+++|+||||||||||+|+++-++.|++|.+.+.|+++...   
T Consensus         3 lle~kq~~y~a---------~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~---   70 (223)
T COG4619           3 LLELKQVGYLA---------GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL---   70 (223)
T ss_pred             chHHHHHHhhc---------CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc---
Confidence            35566665443         457899999999999999999999999999999999999999999999999875322   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc----CCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV----AGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv  182 (348)
                              -...++.+++|..|+..++......++++..    ...++.....+++.+++.   +++.+.+||||||||+
T Consensus        71 --------~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qri  142 (223)
T COG4619          71 --------KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRI  142 (223)
T ss_pred             --------ChHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHH
Confidence                    1245778889988777776665555555432    234566777889999986   4778999999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      +|+|-|..-|+|||||||||+||+.+++.+.++|.++.+++..++++||||.+++.+.+|+++-+..|++
T Consensus       143 AliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         143 ALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             HHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            9999999999999999999999999999999999999988899999999999999999999999999876

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=4.2e-42  Score=330.06  Aligned_cols=209  Identities=24%  Similarity=0.378  Sum_probs=178.0

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      +.+++++++|.|+         +..++++|||+|++||+.+|+|+||||||||+++|.|+++|++|+|.++|+.+....+
T Consensus         3 ~~l~~~~itK~f~---------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP   73 (501)
T COG3845           3 PALEMRGITKRFP---------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSP   73 (501)
T ss_pred             ceEEEeccEEEcC---------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCH
Confidence            4799999999995         4789999999999999999999999999999999999999999999999987533221


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC-----CCC----HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA-----GID----PQRRAELIKVLDID--LSWRMHKVSD  176 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~----~~~~~~~l~~l~l~--~~~~~~~LSg  176 (348)
                                ....+..++++.|.+.+.+.+++.++ ..+..     ..+    .+++.++.+.+|+.  ++.++.+||-
T Consensus        74 ----------~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsV  143 (501)
T COG3845          74 ----------RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSV  143 (501)
T ss_pred             ----------HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCc
Confidence                      11234557777777777777776554 44432     112    24566788888875  5788999999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||.|.+||..+|++|||||||+-|-|...+++++.|+++.+ .|+|||+|||.++++.++|||+.+|++|+++...
T Consensus       144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~  222 (501)
T COG3845         144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV  222 (501)
T ss_pred             chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence            999999999999999999999999999999999999999999975 5999999999999999999999999999988765


Q ss_pred             C
Q 018938          257 P  257 (348)
Q Consensus       257 ~  257 (348)
                      +
T Consensus       223 ~  223 (501)
T COG3845         223 D  223 (501)
T ss_pred             c
Confidence            5

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-41  Score=335.06  Aligned_cols=206  Identities=19%  Similarity=0.302  Sum_probs=164.8

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++++++||++.|++.      ..+++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.....  
T Consensus        19 ~~mL~lknL~~~~~~~------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i--   90 (549)
T PRK13545         19 KPFDKLKDLFFRSKDG------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALI--   90 (549)
T ss_pred             cceeEEEEEEEecCCC------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeE--
Confidence            4579999999999531      12469999999999999999999999999999999999999999999999864210  


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                              .+       ...+       ...++..+.+ +.  ..+.+.    +.+.++++.+++.  .++++.+|||||
T Consensus        91 --------~~-------~~~l-------~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQ  148 (549)
T PRK13545         91 --------AI-------SSGL-------NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGM  148 (549)
T ss_pred             --------Ee-------cccc-------CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHH
Confidence                    00       0000       0112222221 11  112222    2345678888885  467899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      |||++|||||+.+|++|||||||+|||+.++..++++|.++. +.|.|||++|||++++..+||++++|++|+++..|++
T Consensus       149 rQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~-~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~  227 (549)
T PRK13545        149 KSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK-EQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDI  227 (549)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            999999999999999999999999999999999999999985 4589999999999999999999999999999999999


Q ss_pred             hHHHHh
Q 018938          259 DKVKEA  264 (348)
Q Consensus       259 ~~~~~~  264 (348)
                      +++...
T Consensus       228 ~el~~~  233 (549)
T PRK13545        228 KEVVDH  233 (549)
T ss_pred             HHHHhh
Confidence            887653

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=2e-41  Score=344.85  Aligned_cols=202  Identities=25%  Similarity=0.294  Sum_probs=158.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|++        ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++..      
T Consensus         5 ~~l~i~~l~~~y~~--------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~------   70 (556)
T PRK11819          5 YIYTMNRVSKVVPP--------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI------   70 (556)
T ss_pred             EEEEEeeEEEEeCC--------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC------
Confidence            58999999999941        4679999999999999999999999999999999999999999999886421      


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-h-----------------------------------------
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-F-----------------------------------------  146 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------------------------  146 (348)
                           .+.++.+           ...+...+++.+.+ +                                         
T Consensus        71 -----~i~~v~Q-----------~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (556)
T PRK11819         71 -----KVGYLPQ-----------EPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIID  134 (556)
T ss_pred             -----EEEEEec-----------CCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHH
Confidence                 1112211           11110011110000 0                                         


Q ss_pred             ccCCCC-HHHHHHHHHHcCCC-cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcC
Q 018938          147 GVAGID-PQRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  224 (348)
Q Consensus       147 ~~~~~~-~~~~~~~l~~l~l~-~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g  224 (348)
                      ....+. ..++.++++.+++. .++++.+|||||||||+|||||+.+|++||||||||+||+.++..+.++|+++    +
T Consensus       135 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~  210 (556)
T PRK11819        135 AADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----P  210 (556)
T ss_pred             hcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----C
Confidence            000011 23456778888885 46788999999999999999999999999999999999999999999999875    3


Q ss_pred             cEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhHHHHh
Q 018938          225 ATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKEA  264 (348)
Q Consensus       225 ~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~  264 (348)
                      .|||+||||++++..+||+|++|++|+++ +.|+.+++.+.
T Consensus       211 ~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~  251 (556)
T PRK11819        211 GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQ  251 (556)
T ss_pred             CeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHHH
Confidence            59999999999999999999999999986 77888877543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.6e-42  Score=346.31  Aligned_cols=200  Identities=21%  Similarity=0.304  Sum_probs=162.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..      
T Consensus       318 ~~l~~~~l~~~~~---------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~------  382 (530)
T PRK15064        318 NALEVENLTKGFD---------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA------  382 (530)
T ss_pred             ceEEEEeeEEeeC---------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce------
Confidence            4899999999994         3579999999999999999999999999999999999999999999987631      


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHHhcc--CCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIFGV--AGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRR  181 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQR  181 (348)
                           .+.           |+++...  +....+..+.+...  .....+++.++++.+++.   .++++.+||||||||
T Consensus       383 -----~i~-----------~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr  446 (530)
T PRK15064        383 -----NIG-----------YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGR  446 (530)
T ss_pred             -----EEE-----------EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHH
Confidence                 122           2222211  11122333322111  112344567889999883   367899999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDK  260 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~  260 (348)
                      |+|||||+.+|++|||||||+|||+.++..++++|+++    +.|||+||||++++..+||++++|++|+++ ..|++++
T Consensus       447 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~  522 (530)
T PRK15064        447 MLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEE  522 (530)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHH
Confidence            99999999999999999999999999999999999865    459999999999999999999999999998 7788877


Q ss_pred             HHH
Q 018938          261 VKE  263 (348)
Q Consensus       261 ~~~  263 (348)
                      +.+
T Consensus       523 ~~~  525 (530)
T PRK15064        523 YLR  525 (530)
T ss_pred             HHH
Confidence            654

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1.3e-41  Score=348.98  Aligned_cols=212  Identities=18%  Similarity=0.270  Sum_probs=177.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|++++|++        +.++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.++..-   
T Consensus       340 ~i~~~~v~f~y~~--------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~---  408 (592)
T PRK10790        340 RIDIDNVSFAYRD--------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL---  408 (592)
T ss_pred             eEEEEEEEEEeCC--------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhC---
Confidence            5999999999962        35799999999999999999999999999999999999999999999999865321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg  176 (348)
                              ....+++.++|++|++.++.....+++.++. ..+.+++.++++..++.         .+    .....|||
T Consensus       409 --------~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG  479 (592)
T PRK10790        409 --------SHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV  479 (592)
T ss_pred             --------CHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence                    1235677889998887776665455555543 44566677777766642         11    23457999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+  ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus       480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G  556 (592)
T PRK10790        480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIV-EADTILVLHRGQAVEQG  556 (592)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEEEc
Confidence            999999999999999999999999999999999999999998753  689999999998876 59999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +.+++.+.
T Consensus       557 ~~~~L~~~  564 (592)
T PRK10790        557 THQQLLAA  564 (592)
T ss_pred             CHHHHHhC
Confidence            99998754

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=7.7e-42  Score=303.86  Aligned_cols=192  Identities=25%  Similarity=0.331  Sum_probs=150.6

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|+++.|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....   
T Consensus         1 l~~~~l~~~~~---------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---   68 (198)
T TIGR01189         1 LAARNLACSRG---------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR---   68 (198)
T ss_pred             CEEEEEEEEEC---------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch---
Confidence            47899999994         367999999999999999999999999999999999999999999999997642210   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC  185 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA  185 (348)
                               ..+++.++|.++........+..+.+ +.  ........+.++++.+++.  .++++.+|||||||||+||
T Consensus        69 ---------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  139 (198)
T TIGR01189        69 ---------DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALA  139 (198)
T ss_pred             ---------HHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHH
Confidence                     11233455554443333333443322 11  1111233567788888885  3678899999999999999


Q ss_pred             HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938          186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  246 (348)
Q Consensus       186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~  246 (348)
                      |||+.+|++|||||||++||+.++..++++|.++.+ .|.|||++||+...+  .|++++.
T Consensus       140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~--~~~~~~~  197 (198)
T TIGR01189       140 RLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGL--VEARELR  197 (198)
T ss_pred             HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccc--cceEEee
Confidence            999999999999999999999999999999999864 489999999998655  4777764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=3.5e-42  Score=345.70  Aligned_cols=210  Identities=23%  Similarity=0.413  Sum_probs=163.1

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-CCceEEEcCeecccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-EPEMVKVLGRSAFHD  106 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-~~G~i~i~G~~~~~~  106 (348)
                      .++|+++|+++.|+         ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.++ ++|+|.++|++....
T Consensus       258 ~~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~  328 (490)
T PRK10938        258 EPRIVLNNGVVSYN---------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSG  328 (490)
T ss_pred             CceEEEeceEEEEC---------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCC
Confidence            46899999999994         35699999999999999999999999999999999998765 689999999753211


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccc--cchHHHHHh-cc------C-CCC---HHHHHHHHHHcCCCc---Ccc
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQM--DVSAEKMIF-GV------A-GID---PQRRAELIKVLDIDL---SWR  170 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~------~-~~~---~~~~~~~l~~l~l~~---~~~  170 (348)
                      ...          ...+..++|+++......  ..+..++.. ..      . ...   .+++.++++.+++..   +++
T Consensus       329 ~~~----------~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  398 (490)
T PRK10938        329 ETI----------WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAP  398 (490)
T ss_pred             CCH----------HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCc
Confidence            000          012334555544322211  123344321 11      0 111   234567888898853   567


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh-hCCEEEEEcC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN-WPSHIVYVAH  249 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~-~~d~v~~l~~  249 (348)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.+.|||+||||++++.. +||++++|++
T Consensus       399 ~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~  478 (490)
T PRK10938        399 FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPD  478 (490)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecC
Confidence            899999999999999999999999999999999999999999999999976534579999999999987 5999999999


Q ss_pred             CEEeeec
Q 018938          250 GKLQLAM  256 (348)
Q Consensus       250 G~i~~~g  256 (348)
                      |++++..
T Consensus       479 G~i~~~~  485 (490)
T PRK10938        479 GDIYRYV  485 (490)
T ss_pred             CceEEee
Confidence            9987654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=5.5e-42  Score=297.99  Aligned_cols=171  Identities=28%  Similarity=0.463  Sum_probs=138.0

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|++       ....+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..+....   
T Consensus         1 l~~~~l~~~~~~-------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~---   70 (171)
T cd03228           1 IEFKNVSFSYPG-------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD---   70 (171)
T ss_pred             CEEEEEEEEcCC-------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC---
Confidence            468999999953       1136999999999999999999999999999999999999999999999997542110   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~  190 (348)
                              ...+++.++|.+++..++. .+..               +-+             |||||||||+|||||+.
T Consensus        71 --------~~~~~~~i~~~~~~~~~~~-~t~~---------------e~l-------------LS~G~~~rl~la~al~~  113 (171)
T cd03228          71 --------LESLRKNIAYVPQDPFLFS-GTIR---------------ENI-------------LSGGQRQRIAIARALLR  113 (171)
T ss_pred             --------HHHHHhhEEEEcCCchhcc-chHH---------------HHh-------------hCHHHHHHHHHHHHHhc
Confidence                    0112334555543321111 1111               101             99999999999999999


Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      +|++|||||||+|||+.++..+.++|+++. + ++|||++|||++++.. ||++++|++|+
T Consensus       114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~~~~l~~g~  171 (171)
T cd03228         114 DPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLSTIRD-ADRIIVLDDGR  171 (171)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence            999999999999999999999999999985 3 6899999999999987 99999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=9.2e-42  Score=308.91  Aligned_cols=208  Identities=25%  Similarity=0.347  Sum_probs=155.7

Q ss_pred             eEEEeceEEEecCCCCCCCCC-CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe----ecc
Q 018938           30 TVEINALKFTYPGIDGHPPPG-STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR----SAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g-~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~----~~~  104 (348)
                      ||+++||+++|+....   .+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.    ++.
T Consensus         1 ml~~~~l~~~~~~~~~---~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~   77 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQ---GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA   77 (224)
T ss_pred             CEEEEeeEEEeecccC---CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchh
Confidence            4889999999952100   01 246999999999999999999999999999999999999999999999742    111


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCCc---CccCCCC
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDIDL---SWRMHKV  174 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~~---~~~~~~L  174 (348)
                      ....    ...   ....++.++|++++...+..++..+.+ +.  ..+..    .+++.++++.+++..   ++++.+|
T Consensus        78 ~~~~----~~~---~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  150 (224)
T TIGR02324        78 QASP----REV---LEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF  150 (224)
T ss_pred             hcCH----HHH---HHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence            0000    000   000122356665554444444444332 11  11222    234567788888852   5678999


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      |||||||++|||||+.+|++|||||||++||+.++..+.++|+++.+ .|.|||++||+++++..+||+++.+.
T Consensus       151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeEecC
Confidence            99999999999999999999999999999999999999999999864 58999999999999999999998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6e-42  Score=331.69  Aligned_cols=212  Identities=22%  Similarity=0.329  Sum_probs=186.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+++|++        ++++|+++||+|++||.+||+|+|||||||++|+|.+++. .+|+|.++|+++..-. 
T Consensus       350 ~~I~F~dV~f~y~~--------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~-  419 (591)
T KOG0057|consen  350 GSIEFDDVHFSYGP--------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVS-  419 (591)
T ss_pred             CcEEEEeeEEEeCC--------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhC-
Confidence            35999999999963        4569999999999999999999999999999999999987 9999999998764321 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-----c--------CccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-----L--------SWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-----~--------~~~~~~LS  175 (348)
                                ...+|+.+++++|+..++.+...+++.++....+.+++.++++..++.     +        ..+...||
T Consensus       420 ----------~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LS  489 (591)
T KOG0057|consen  420 ----------LESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLS  489 (591)
T ss_pred             ----------hHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccc
Confidence                      134678899999998888777778888888777888888888888763     1        12346799


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+||||++.+|+|+++|||||+||.++..++++.+.+.  ..++|+|+|-|+++.+.. ||+|+++++|++.+.
T Consensus       490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~  566 (591)
T KOG0057|consen  490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY  566 (591)
T ss_pred             cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe
Confidence            99999999999999999999999999999999999999999984  458999999999999975 899999999999999


Q ss_pred             cChhHHHH
Q 018938          256 MPMDKVKE  263 (348)
Q Consensus       256 g~~~~~~~  263 (348)
                      |+.+++..
T Consensus       567 gth~ell~  574 (591)
T KOG0057|consen  567 GTHSELLA  574 (591)
T ss_pred             ccHHHHhh
Confidence            99999886

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=1.2e-41  Score=304.06  Aligned_cols=187  Identities=22%  Similarity=0.325  Sum_probs=140.6

Q ss_pred             EEEeceEEEecCCCCCCCCCC---CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGS---TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~---~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      |+++||+++|++       ..   +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..     
T Consensus         1 l~~~~l~~~~~~-------~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i-----   68 (204)
T cd03250           1 ISVEDASFTWDS-------GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSI-----   68 (204)
T ss_pred             CEEeEEEEecCC-------CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEE-----
Confidence            478999999953       11   369999999999999999999999999999999999999999999998831     


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-----------C--cCccCCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-----------D--LSWRMHKV  174 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~L  174 (348)
                              .++           +++..+. ..+..+.+........+...+.++.+++           .  .+..+.+|
T Consensus        69 --------~~~-----------~q~~~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l  128 (204)
T cd03250          69 --------AYV-----------SQEPWIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINL  128 (204)
T ss_pred             --------EEE-----------ecCchhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcC
Confidence                    111           1111111 1222222211111122222222222221           1  23457899


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      |+|||||++|||||+.+|+++||||||++||+.+++.+++ +++++.++ |.|||++||+++.+.. ||++++|++|+
T Consensus       129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l~~G~  204 (204)
T cd03250         129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLDNGR  204 (204)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence            9999999999999999999999999999999999999998 46666544 8999999999999987 99999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.7e-42  Score=357.99  Aligned_cols=217  Identities=23%  Similarity=0.321  Sum_probs=180.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+|+|+..      .+.++|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|.++|.++..-  
T Consensus       349 g~ief~nV~FsYPsR------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~--  420 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSR------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNL--  420 (1228)
T ss_pred             cceEEEEEEecCCCC------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhc--
Confidence            469999999999852      246899999999999999999999999999999999999999999999999865321  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-----------C--cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-----------D--LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LS  175 (348)
                               ....++..++.+.|++.++.....+++.++.++.+.+++.++.+..+.           +  ...+-.+||
T Consensus       421 ---------~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS  491 (1228)
T KOG0055|consen  421 ---------NLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS  491 (1228)
T ss_pred             ---------chHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence                     112456778888777655555555667777766666655555544321           1  123345699


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||||||||+.+|+|||||||||+||+++...+.+.|.+..  .|+|-|+|+|++..+.. +|+|++|++|+|++.
T Consensus       492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~  568 (1228)
T KOG0055|consen  492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQ  568 (1228)
T ss_pred             hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhhhc-cCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999874  48899999999999987 999999999999999


Q ss_pred             cChhHHHHhh
Q 018938          256 MPMDKVKEAS  265 (348)
Q Consensus       256 g~~~~~~~~~  265 (348)
                      |+.+++....
T Consensus       569 G~h~ELi~~~  578 (1228)
T KOG0055|consen  569 GTHDELIALG  578 (1228)
T ss_pred             cCHHHHHhcc
Confidence            9999998765

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.7e-42  Score=343.32  Aligned_cols=210  Identities=18%  Similarity=0.270  Sum_probs=165.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      +.++++|++  +           ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....
T Consensus       256 ~~l~~~~~~--~-----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~  322 (501)
T PRK11288        256 VRLRLDGLK--G-----------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSP  322 (501)
T ss_pred             cEEEEeccc--c-----------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCH
Confidence            468899987  3           148999999999999999999999999999999999999999999999976421100


Q ss_pred             ccccCcccccchhhhhhhhhcCCCcc---ccccchHHHH-HhccC------C---CC---HHHHHHHHHHcCCC---cCc
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVP---IQMDVSAEKM-IFGVA------G---ID---PQRRAELIKVLDID---LSW  169 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~------~---~~---~~~~~~~l~~l~l~---~~~  169 (348)
                                ....+..++|.++...   .+...+..+. .++..      +   ..   .+.+.++++.+++.   .++
T Consensus       323 ----------~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  392 (501)
T PRK11288        323 ----------RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQ  392 (501)
T ss_pred             ----------HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccC
Confidence                      0011233455544321   2223333332 22110      0   01   13456788889883   367


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ .|.|||+||||++++..+||++++|++
T Consensus       393 ~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~i~~l~~  471 (501)
T PRK11288        393 LIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEVLGVADRIVVMRE  471 (501)
T ss_pred             ccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHhhCCEEEEEEC
Confidence            8999999999999999999999999999999999999999999999999875 589999999999999999999999999


Q ss_pred             CEEeeecChhHHH
Q 018938          250 GKLQLAMPMDKVK  262 (348)
Q Consensus       250 G~i~~~g~~~~~~  262 (348)
                      |++++.|+++++.
T Consensus       472 g~i~~~~~~~~~~  484 (501)
T PRK11288        472 GRIAGELAREQAT  484 (501)
T ss_pred             CEEEEEEccccCC
Confidence            9999999887654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=2.2e-41  Score=345.54  Aligned_cols=213  Identities=22%  Similarity=0.380  Sum_probs=179.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|++|+|+        +++++|+|+||++++||.+||+||||||||||+++|+|++.|++|+|.++|.++..-   
T Consensus       328 ~I~f~~vsf~y~--------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i---  396 (567)
T COG1132         328 SIEFENVSFSYP--------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI---  396 (567)
T ss_pred             eEEEEEEEEEcC--------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc---
Confidence            499999999995        247899999999999999999999999999999999999999999999999875321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-----------C--cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-----------D--LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LSg  176 (348)
                              ....+++.+++++|+..++.....+++.++.+..+.+++.++++..++           +  .......|||
T Consensus       397 --------~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg  468 (567)
T COG1132         397 --------SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG  468 (567)
T ss_pred             --------CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence                    123567888988877777665555666677665566666555554332           1  1233467999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+.+|++||||||||+||+.+...+.+.+.++.  +++|+|+|+|.+..+.. ||+|++|++|++++.|
T Consensus       469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G  545 (567)
T COG1132         469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERG  545 (567)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhHHHh-CCEEEEEECCEEEEec
Confidence            99999999999999999999999999999999999999999775  36799999999999987 9999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +.+++...
T Consensus       546 ~h~eLl~~  553 (567)
T COG1132         546 THEELLAK  553 (567)
T ss_pred             CHHHHHHc
Confidence            99999875

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=8.7e-42  Score=344.21  Aligned_cols=211  Identities=17%  Similarity=0.257  Sum_probs=165.5

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++|+++              .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus       266 ~~~l~~~~l~~--------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~  331 (510)
T PRK15439        266 APVLTVEDLTG--------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALS  331 (510)
T ss_pred             CceEEEeCCCC--------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCC
Confidence            45799999982              1599999999999999999999999999999999999999999999997643211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCc---cccccchHHHHH-h------ccC-CCC--HHHHHHHHHHcCCC---cCccC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMI-F------GVA-GID--PQRRAELIKVLDID---LSWRM  171 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~------~~~-~~~--~~~~~~~l~~l~l~---~~~~~  171 (348)
                      ..          ...+..++|+++..   .++...+..+.+ .      ... ...  .+.+.++++.+++.   .++++
T Consensus       332 ~~----------~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~  401 (510)
T PRK15439        332 TA----------QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA  401 (510)
T ss_pred             HH----------HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc
Confidence            00          01122355554432   122223332221 1      010 111  12356788889885   36789


Q ss_pred             CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      .+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|.|||+||||++++..+||++++|++|+
T Consensus       402 ~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~~i~~~~d~i~~l~~G~  480 (510)
T PRK15439        402 RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLEEIEQMADRVLVMHQGE  480 (510)
T ss_pred             ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence            99999999999999999999999999999999999999999999999975 48999999999999999999999999999


Q ss_pred             EeeecChhHHHH
Q 018938          252 LQLAMPMDKVKE  263 (348)
Q Consensus       252 i~~~g~~~~~~~  263 (348)
                      ++..+.++++..
T Consensus       481 i~~~~~~~~~~~  492 (510)
T PRK15439        481 ISGALTGAAINV  492 (510)
T ss_pred             EEEEEccccCCH
Confidence            999998877653

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=3.1e-41  Score=304.33  Aligned_cols=202  Identities=19%  Similarity=0.283  Sum_probs=150.6

Q ss_pred             EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938           32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS  111 (348)
Q Consensus        32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~  111 (348)
                      .+.|++++|++        ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|..+........
T Consensus         2 ~~~~~~~~~~~--------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~   73 (218)
T cd03290           2 QVTNGYFSWGS--------GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAT   73 (218)
T ss_pred             eeeeeEEecCC--------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccccccc
Confidence            57899999963        3679999999999999999999999999999999999999999999999975422110000


Q ss_pred             cCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCCHHH
Q 018938          112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVSDGQ  178 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGq  178 (348)
                             ....++.++|.+++..++ ..+..+.+........+...++++.+++.             .+.++.+|||||
T Consensus        74 -------~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~  145 (218)
T cd03290          74 -------RSRNRYSVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ  145 (218)
T ss_pred             -------chhhcceEEEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence                   001123455555544333 23444333211112233334455555432             134678999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH--HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR--FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~--~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      ||||+|||||+.+|++|||||||++||+.++..+++  +++.+ ++.|.|||++||+++++. .||++++|++|.
T Consensus       146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQYLP-HADWIIAMKDGS  218 (218)
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence            999999999999999999999999999999999998  56655 455899999999999985 699999999873

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=2.2e-41  Score=353.43  Aligned_cols=214  Identities=22%  Similarity=0.333  Sum_probs=173.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+|+|++.      .++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..-  
T Consensus       477 ~~I~~~nVsf~Y~~~------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~--  548 (711)
T TIGR00958       477 GLIEFQDVSFSYPNR------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQY--  548 (711)
T ss_pred             CeEEEEEEEEECCCC------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc--
Confidence            359999999999631      135799999999999999999999999999999999999999999999999875321  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LS  175 (348)
                               ....+++.+++++|+..++.....+++.++....+.++..++++..++.         .+    ....+||
T Consensus       549 ---------~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS  619 (711)
T TIGR00958       549 ---------DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLS  619 (711)
T ss_pred             ---------CHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCC
Confidence                     1134567788888877666555455665555545566666666665542         11    2345799


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+++|++||||||||+||+++...+.+ ..   ...++|+|+|||+++.+. .||+|++|++|+|++.
T Consensus       620 GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~  694 (711)
T TIGR00958       620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEM  694 (711)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999998888 22   234789999999999886 5999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+.+++.+.
T Consensus       695 Gt~~eL~~~  703 (711)
T TIGR00958       695 GTHKQLMED  703 (711)
T ss_pred             eCHHHHHhC
Confidence            999988754

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=5.1e-41  Score=344.28  Aligned_cols=213  Identities=21%  Similarity=0.298  Sum_probs=174.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|++|+|++        ++++|+|+||++++||+++|+|+||||||||+|+|+|+++|++|+|.++|.++..-   
T Consensus       334 ~I~~~~vsf~y~~--------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~---  402 (588)
T PRK13657        334 AVEFDDVSFSYDN--------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV---  402 (588)
T ss_pred             eEEEEEEEEEeCC--------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhC---
Confidence            5999999999952        35699999999999999999999999999999999999999999999999865321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg  176 (348)
                              ....+++.++|++|+..++.....+++.++.+..+.++..++++..++.         .+    .....|||
T Consensus       403 --------~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg  474 (588)
T PRK13657        403 --------TRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG  474 (588)
T ss_pred             --------CHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence                    1234567788888777666554445555544444555555565554431         12    23457999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+++|++||||||||+||+.+...+++.|.++.  .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus       475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g  551 (588)
T PRK13657        475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVR-NADRILVFDNGRVVESG  551 (588)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999998864  3789999999998875 69999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +.+++.+.
T Consensus       552 ~~~~l~~~  559 (588)
T PRK13657        552 SFDELVAR  559 (588)
T ss_pred             CHHHHHHC
Confidence            99888653

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=2.4e-41  Score=353.56  Aligned_cols=212  Identities=23%  Similarity=0.337  Sum_probs=175.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|+.        ++++|+|+||+|++|+.++|+||||||||||+|+|+|++.|++|+|.++|.++..-   
T Consensus       473 ~I~~~~vsf~y~~--------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~---  541 (708)
T TIGR01193       473 DIVINDVSYSYGY--------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI---  541 (708)
T ss_pred             cEEEEEEEEEcCC--------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc---
Confidence            5999999999952        35799999999999999999999999999999999999999999999999865321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhc-cCCCCHHHHHHHHHHcCCC---------c----CccCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG-VAGIDPQRRAELIKVLDID---------L----SWRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LS  175 (348)
                              ....+++.++|++|+..++.....+++.++ ....+.++..++++..++.         .    ......||
T Consensus       542 --------~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS  613 (708)
T TIGR01193       542 --------DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS  613 (708)
T ss_pred             --------CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence                    123467788998887766655444555554 2345566666666655441         1    22346799


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++   .++|+|+|||+++.+. .||+|++|++|++++.
T Consensus       614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~  689 (708)
T TIGR01193       614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQ  689 (708)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHHH-cCCEEEEEECCEEEEE
Confidence            99999999999999999999999999999999999999999874   3789999999999875 6999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+.+++.+.
T Consensus       690 G~~~~L~~~  698 (708)
T TIGR01193       690 GSHDELLDR  698 (708)
T ss_pred             CCHHHHHhc
Confidence            999988653

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.3e-41  Score=342.40  Aligned_cols=209  Identities=21%  Similarity=0.363  Sum_probs=166.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||++              .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus       256 ~~l~~~~l~~--------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~  321 (501)
T PRK10762        256 VRLKVDNLSG--------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP  321 (501)
T ss_pred             cEEEEeCccc--------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence            5789999873              26999999999999999999999999999999999999999999999976421100


Q ss_pred             ccccCcccccchhhhhhhhhcCCCc---cccccchHHHHH-hcc----C---C-CC----HHHHHHHHHHcCCC---cCc
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEV---PIQMDVSAEKMI-FGV----A---G-ID----PQRRAELIKVLDID---LSW  169 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~----~---~-~~----~~~~~~~l~~l~l~---~~~  169 (348)
                                ....+..++|+++..   .....++..+.+ +..    .   + ..    .+++.++++.+++.   .++
T Consensus       322 ----------~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  391 (501)
T PRK10762        322 ----------QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ  391 (501)
T ss_pred             ----------HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccC
Confidence                      001233466665543   122334443322 110    0   0 11    23456788888883   367


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |.|||++|||++++..+||++++|++
T Consensus       392 ~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~  470 (501)
T PRK10762        392 AIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHE  470 (501)
T ss_pred             chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence            89999999999999999999999999999999999999999999999998754 99999999999999999999999999


Q ss_pred             CEEeeecChhHHH
Q 018938          250 GKLQLAMPMDKVK  262 (348)
Q Consensus       250 G~i~~~g~~~~~~  262 (348)
                      |+++..++++++.
T Consensus       471 G~i~~~~~~~~~~  483 (501)
T PRK10762        471 GRISGEFTREQAT  483 (501)
T ss_pred             CEEEEEeccccCC
Confidence            9999988877653

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.8e-42  Score=302.91  Aligned_cols=212  Identities=24%  Similarity=0.415  Sum_probs=170.7

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      ..++|+++|+++.|+         ++++|+|||++|++||.++|+|||||||||||++++|.++|++|.+.+.|+..-..
T Consensus        28 ~~~li~l~~v~v~r~---------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~   98 (257)
T COG1119          28 NEPLIELKNVSVRRN---------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG   98 (257)
T ss_pred             CcceEEecceEEEEC---------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCC
Confidence            456899999999995         57899999999999999999999999999999999999999999999999864322


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHH-------hccC--CCCH---HHHHHHHHHcCCC--cCcc
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMI-------FGVA--GIDP---QRRAELIKVLDID--LSWR  170 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~--~~~~---~~~~~~l~~l~l~--~~~~  170 (348)
                      .         .. .++++.++++.....  +....++.+.+       .+..  ..+.   +++..+++.+++.  .+++
T Consensus        99 ~---------~~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~  168 (257)
T COG1119          99 E---------TI-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRP  168 (257)
T ss_pred             c---------ch-HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCc
Confidence            1         11 356677777642211  11111222221       1111  2222   4556788888886  4788


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ..+||-||||||.|||||+.+|++|||||||+|||...+..+.+.|.+++.. .+.++|+|||..+++....++++.+++
T Consensus       169 ~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~  248 (257)
T COG1119         169 FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKE  248 (257)
T ss_pred             hhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeC
Confidence            9999999999999999999999999999999999999999999999998743 367899999999999999999999999


Q ss_pred             CEEeeecC
Q 018938          250 GKLQLAMP  257 (348)
Q Consensus       250 G~i~~~g~  257 (348)
                      |+++..|.
T Consensus       249 g~v~~~g~  256 (257)
T COG1119         249 GEVVAQGK  256 (257)
T ss_pred             Cceeeccc
Confidence            99998763

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=1.8e-41  Score=317.57  Aligned_cols=234  Identities=23%  Similarity=0.318  Sum_probs=182.0

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-----CCceEEEcCee
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-----EPEMVKVLGRS  102 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-----~~G~i~i~G~~  102 (348)
                      .++|+++||++.|...+     +...++++|||+|++||.++|+|+||||||-..+.|+|+++-     .+|+|.++|.+
T Consensus         4 ~~lL~v~nLsV~f~~~~-----~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~d   78 (534)
T COG4172           4 MPLLSIRNLSVAFHQEG-----GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGED   78 (534)
T ss_pred             CcceeeeccEEEEecCC-----cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChh
Confidence            46899999999995421     467899999999999999999999999999999999999743     24678888876


Q ss_pred             ccccccccccCcccccchhhhhhhhhcCCCcc--ccccchHHH-H---HhccCCCC----HHHHHHHHHHcCCC-----c
Q 018938          103 AFHDTALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEK-M---IFGVAGID----PQRRAELIKVLDID-----L  167 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~---~~~~~~~~----~~~~~~~l~~l~l~-----~  167 (348)
                      +..-...    .+..   ....++++++|++-  +++-.+... +   +....+.+    +.++.++++.+|+.     +
T Consensus        79 ll~~se~----~lr~---iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl  151 (534)
T COG4172          79 LLAASER----QLRG---VRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL  151 (534)
T ss_pred             hhcCCHH----HHhh---hcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh
Confidence            5432211    0000   01134555544321  222222221 1   11111222    24456778888885     3


Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      +.+|++|||||||||.||+||+++|++||.||||++||...+.+|+++|+++.++.|+++++||||+..+.+++|||+||
T Consensus       152 ~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM  231 (534)
T COG4172         152 DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVM  231 (534)
T ss_pred             hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEE
Confidence            66899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEeeecChhHHHHhhhhhhHHHH
Q 018938          248 AHGKLQLAMPMDKVKEASKLSLMRTV  273 (348)
Q Consensus       248 ~~G~i~~~g~~~~~~~~~~~~~~~~~  273 (348)
                      .+|++++.|..+.++..+.+.+.+.+
T Consensus       232 ~~G~ivE~~~t~~lF~~PqHpYTr~L  257 (534)
T COG4172         232 QHGEIVETGTTETLFAAPQHPYTRKL  257 (534)
T ss_pred             eccEEeecCcHHHHhhCCCChHHHHH
Confidence            99999999999999998888765543

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-41  Score=341.10  Aligned_cols=212  Identities=19%  Similarity=0.236  Sum_probs=163.4

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||++.|           +.+|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++....
T Consensus       248 ~~~i~~~~l~~~~-----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~  316 (491)
T PRK10982        248 EVILEVRNLTSLR-----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHN  316 (491)
T ss_pred             CcEEEEeCccccc-----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCC
Confidence            3589999999975           25899999999999999999999999999999999999999999999997653211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCcc---ccccch------HHHHHhcc--CC-CC----HHHHHHHHHHcCCC---cC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVP---IQMDVS------AEKMIFGV--AG-ID----PQRRAELIKVLDID---LS  168 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~~--~~-~~----~~~~~~~l~~l~l~---~~  168 (348)
                      ..          ...+..++|+++...   .+...+      ..++....  .+ ..    .+.+.++++.+++.   .+
T Consensus       317 ~~----------~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  386 (491)
T PRK10982        317 AN----------EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHR  386 (491)
T ss_pred             HH----------HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcc
Confidence            00          001122333332210   111111      11111110  01 11    23456778888873   36


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +++.+|||||||||+|||||+.+|+||||||||+|||+.++..++++|.++.+ .|.|||++|||++++..+||++++|+
T Consensus       387 ~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~~~~~~~d~v~~l~  465 (491)
T PRK10982        387 TQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPELLGITDRILVMS  465 (491)
T ss_pred             cccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChHHHHhhCCEEEEEE
Confidence            78999999999999999999999999999999999999999999999999865 59999999999999999999999999


Q ss_pred             CCEEeeecChhHH
Q 018938          249 HGKLQLAMPMDKV  261 (348)
Q Consensus       249 ~G~i~~~g~~~~~  261 (348)
                      +|+++..++.+++
T Consensus       466 ~g~i~~~~~~~~~  478 (491)
T PRK10982        466 NGLVAGIVDTKTT  478 (491)
T ss_pred             CCEEEEEEccccC
Confidence            9999987766543

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2e-41  Score=375.59  Aligned_cols=216  Identities=22%  Similarity=0.297  Sum_probs=181.5

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .+.|+++||+|.|++       +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... 
T Consensus       926 ~~~L~I~nLsK~y~~-------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~-  997 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEP-------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN-  997 (2272)
T ss_pred             CceEEEEeEEEEecC-------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcch-
Confidence            357999999999952       246799999999999999999999999999999999999999999999999865211 


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                 ....++.+++.++...+...+++.+.+ +.  ..+..    .+++.++++.+++.  .++++.+|||||
T Consensus       998 -----------~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGq 1066 (2272)
T TIGR01257       998 -----------LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGM 1066 (2272)
T ss_pred             -----------HHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence                       112345677777766566666666543 21  22222    23456788899986  467899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+||+||+.+|++|||||||+|||+.+++.++++|+++. + |+|||++|||++++..+||||++|++|+++..|++
T Consensus      1067 KQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257      1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCH
Confidence            999999999999999999999999999999999999999984 3 89999999999999999999999999999999999


Q ss_pred             hHHHHh
Q 018938          259 DKVKEA  264 (348)
Q Consensus       259 ~~~~~~  264 (348)
                      +.+.+.
T Consensus      1145 ~~Lk~~ 1150 (2272)
T TIGR01257      1145 LFLKNC 1150 (2272)
T ss_pred             HHHHHh
Confidence            988654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=6e-41  Score=340.81  Aligned_cols=214  Identities=22%  Similarity=0.323  Sum_probs=169.3

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++|++|+|++       +++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..-. 
T Consensus       315 ~~i~~~~v~~~y~~-------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~-  386 (544)
T TIGR01842       315 GHLSVENVTIVPPG-------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWD-  386 (544)
T ss_pred             CeEEEEEEEEEcCC-------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCC-
Confidence            35999999999963       2457999999999999999999999999999999999999999999999997643211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHH---------c--CCC--cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV---------L--DID--LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------l--~l~--~~~~~~~LS  175 (348)
                                ...+++.+++++++..++.....+++.+.....+.++..+.++.         +  |++  .......||
T Consensus       387 ----------~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS  456 (544)
T TIGR01842       387 ----------RETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS  456 (544)
T ss_pred             ----------HHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC
Confidence                      12345667788776655544333343323222344444333333         3  222  234567899


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+.+|++|||||||++||+.++..+.+.|.++. ..++|+|++||+++.+. .||+|++|++|++++.
T Consensus       457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~  534 (544)
T TIGR01842       457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK-ARGITVVVITHRPSLLG-CVDKILVLQDGRIARF  534 (544)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHh-hCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEee
Confidence            999999999999999999999999999999999999999999875 34789999999999764 6999999999999999


Q ss_pred             cChhHHH
Q 018938          256 MPMDKVK  262 (348)
Q Consensus       256 g~~~~~~  262 (348)
                      |+.+++.
T Consensus       535 g~~~~l~  541 (544)
T TIGR01842       535 GERDEVL  541 (544)
T ss_pred             CCHHHHh
Confidence            9987764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=7.1e-41  Score=349.19  Aligned_cols=215  Identities=20%  Similarity=0.306  Sum_probs=175.9

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+|+|++       +.+++|+|+||+|++|+.++|+|+||||||||+|+|+|++.|++|+|.++|.++..-  
T Consensus       454 ~~i~~~~vsf~y~~-------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~--  524 (694)
T TIGR01846       454 GAITFENIRFRYAP-------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIA--  524 (694)
T ss_pred             CeEEEEEEEEEcCC-------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhC--
Confidence            35999999999963       345799999999999999999999999999999999999999999999999865321  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-----------C--cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-----------D--LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LS  175 (348)
                               ....+++.+++++|+..++.....+++.++.+..+.++..++++..++           +  .......||
T Consensus       525 ---------~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LS  595 (694)
T TIGR01846       525 ---------DPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLS  595 (694)
T ss_pred             ---------CHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCC
Confidence                     112456778888777665554444455444444455555555555443           1  123456899


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.  .++|+|++||+++.+.. ||+|++|++|++++.
T Consensus       596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~  672 (694)
T TIGR01846       596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAES  672 (694)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEe
Confidence            999999999999999999999999999999999999999999874  47899999999999865 999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+.+++.+.
T Consensus       673 g~~~~l~~~  681 (694)
T TIGR01846       673 GRHEELLAL  681 (694)
T ss_pred             CCHHHHHHc
Confidence            999988764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=4e-41  Score=291.30  Aligned_cols=164  Identities=20%  Similarity=0.323  Sum_probs=133.3

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|++        .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.         
T Consensus         1 i~~~~~~~~~~~--------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------   63 (166)
T cd03223           1 IELENLSLATPD--------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------   63 (166)
T ss_pred             CEEEEEEEEcCC--------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------
Confidence            468999999952        357999999999999999999999999999999999999999999988762         


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~  190 (348)
                                   +.++|.+++..+. ..+..+.+..                .     ++.+||||||||++|||||+.
T Consensus        64 -------------~~i~~~~q~~~~~-~~tv~~nl~~----------------~-----~~~~LS~G~~~rv~laral~~  108 (166)
T cd03223          64 -------------EDLLFLPQRPYLP-LGTLREQLIY----------------P-----WDDVLSGGEQQRLAFARLLLH  108 (166)
T ss_pred             -------------ceEEEECCCCccc-cccHHHHhhc----------------c-----CCCCCCHHHHHHHHHHHHHHc
Confidence                         1122332222111 1222222210                0     468999999999999999999


Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      +|++|||||||++||+.++..+.++|+++    +.|+|++|||++++ .+||++++|+++-
T Consensus       109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~~~  164 (166)
T cd03223         109 KPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLW-KFHDRVLDLDGEG  164 (166)
T ss_pred             CCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence            99999999999999999999999999864    58999999999876 5999999998763

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=1e-40  Score=341.54  Aligned_cols=213  Identities=22%  Similarity=0.296  Sum_probs=170.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|++|+|++        .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..-.  
T Consensus       334 ~i~~~~v~~~y~~--------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--  403 (585)
T TIGR01192       334 AVEFRHITFEFAN--------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVT--  403 (585)
T ss_pred             eEEEEEEEEECCC--------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCC--
Confidence            5999999999952        356899999999999999999999999999999999999999999999997643211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcC-----------CC--cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-----------ID--LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-----------l~--~~~~~~~LSg  176 (348)
                               ...+++.+++++++..++.....+++.++....+.++..++++..+           ++  .......|||
T Consensus       404 ---------~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg  474 (585)
T TIGR01192       404 ---------RESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG  474 (585)
T ss_pred             ---------HHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence                     1234566777777655544433344444433334444433333322           22  2345678999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+.+|++|||||||++||+.+++.+.+.|.++.  .++|||+|||+++.+. .||+|++|++|++++.|
T Consensus       475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g  551 (585)
T TIGR01192       475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKG  551 (585)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHHH-cCCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999999873  3899999999999985 59999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +.+++.+.
T Consensus       552 ~~~~l~~~  559 (585)
T TIGR01192       552 SFQELIQK  559 (585)
T ss_pred             CHHHHHHC
Confidence            99888654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=9.6e-41  Score=340.87  Aligned_cols=214  Identities=23%  Similarity=0.360  Sum_probs=173.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|++++|+.       ++.++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...   
T Consensus       313 ~I~~~~v~~~y~~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~---  382 (569)
T PRK10789        313 ELDVNIRQFTYPQ-------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKL---  382 (569)
T ss_pred             cEEEEEEEEECCC-------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhC---
Confidence            5899999999963       235799999999999999999999999999999999999999999999999864321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LSg  176 (348)
                              ....+++.+++++++..++.....+++.++....+.++..++++..++.             .......|||
T Consensus       383 --------~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSg  454 (569)
T PRK10789        383 --------QLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSG  454 (569)
T ss_pred             --------CHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCH
Confidence                    1124566788887776655443344444443344555555555554431             1234567999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+++|++|||||||++||+.+...+.+.|+++.  .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus       455 Gq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g  531 (569)
T PRK10789        455 GQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALT-EASEILVMQHGHIAQRG  531 (569)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHH-cCCEEEEEeCCEEEEec
Confidence            99999999999999999999999999999999999999999874  4899999999999886 59999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +.+++.+.
T Consensus       532 ~~~~l~~~  539 (569)
T PRK10789        532 NHDQLAQQ  539 (569)
T ss_pred             CHHHHHHc
Confidence            99988754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-40  Score=343.94  Aligned_cols=214  Identities=22%  Similarity=0.253  Sum_probs=159.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+++|+         ++.+|+|+||+|++|+++||+||||||||||||+|+|++.|++|+|.++|.........
T Consensus         1 ~i~i~nls~~~g---------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q   71 (638)
T PRK10636          1 MIVFSSLQIRRG---------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQ   71 (638)
T ss_pred             CEEEEEEEEEeC---------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEec
Confidence            489999999994         46799999999999999999999999999999999999999999999987521000000


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchH-----------HHH--Hh----ccCCCC-HHHHHHHHHHcCCC---cC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-----------EKM--IF----GVAGID-PQRRAELIKVLDID---LS  168 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~----~~~~~~-~~~~~~~l~~l~l~---~~  168 (348)
                      ... ..      .+..+.++.+.......++.           ..+  ..    ...... ..++.++++.+|+.   .+
T Consensus        72 ~~~-~~------~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~  144 (638)
T PRK10636         72 ETP-AL------PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE  144 (638)
T ss_pred             CCC-CC------CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc
Confidence            000 00      00111111111000000000           000  00    011111 34667889999984   36


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +++.+|||||||||+||+||+.+|+||||||||||||+.++.++.++|+++    +.|||+||||++++..+||++++|+
T Consensus       145 ~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~  220 (638)
T PRK10636        145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIE  220 (638)
T ss_pred             CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEe
Confidence            789999999999999999999999999999999999999999999988764    5699999999999999999999999


Q ss_pred             CCEEe-eecChhHHHH
Q 018938          249 HGKLQ-LAMPMDKVKE  263 (348)
Q Consensus       249 ~G~i~-~~g~~~~~~~  263 (348)
                      +|+++ +.|+.+.+..
T Consensus       221 ~G~i~~~~g~~~~~~~  236 (638)
T PRK10636        221 QQSLFEYTGNYSSFEV  236 (638)
T ss_pred             CCEEEEecCCHHHHHH
Confidence            99996 5688777654

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.8e-41  Score=345.72  Aligned_cols=202  Identities=20%  Similarity=0.303  Sum_probs=160.6

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||++.|+         ++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++..     
T Consensus       310 ~~~l~~~~l~~~y~---------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----  375 (638)
T PRK10636        310 NPLLKMEKVSAGYG---------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGI-----  375 (638)
T ss_pred             CceEEEEeeEEEeC---------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCE-----
Confidence            45899999999994         3679999999999999999999999999999999999999999999886321     


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc-CCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~  183 (348)
                            .+.|+.+..   ..      .+....+....+... .......+.++++.+++.   .++++.+|||||||||+
T Consensus       376 ------~igy~~Q~~---~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~  440 (638)
T PRK10636        376 ------KLGYFAQHQ---LE------FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLV  440 (638)
T ss_pred             ------EEEEecCcc---hh------hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHH
Confidence                  122222210   00      001111121111111 112234567888999884   36789999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhHHH
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVK  262 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  262 (348)
                      ||++|+.+|++|||||||+|||+.++..+.++|.++    +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       441 La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        441 LALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence            999999999999999999999999999999999876    349999999999999999999999999997 788888874

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=7.1e-41  Score=307.27  Aligned_cols=188  Identities=22%  Similarity=0.298  Sum_probs=144.1

Q ss_pred             CceeeeeeeEEe-----CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhh
Q 018938           52 TPLINDFTLTLN-----AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREV  126 (348)
Q Consensus        52 ~~~l~~vsl~i~-----~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      .+.+++++|++.     +||+++|+||||||||||+++|+|+++|++|+|.++|..            +.++.       
T Consensus         7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~------------i~~~~-------   67 (246)
T cd03237           7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT------------VSYKP-------   67 (246)
T ss_pred             ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCce------------EEEec-------
Confidence            346777777776     799999999999999999999999999999999998741            11111       


Q ss_pred             hhcCCCccccccchHHHHHh-ccC--CCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccC
Q 018938          127 AFAGFEVPIQMDVSAEKMIF-GVA--GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT  201 (348)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPt  201 (348)
                          +........++.+++. ...  ........++++.+++.  .++++.+|||||||||+|||||+.+|+++||||||
T Consensus        68 ----q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt  143 (246)
T cd03237          68 ----QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS  143 (246)
T ss_pred             ----ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence                1111111223333221 111  11123356788888885  46788999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe--eecChhHHH
Q 018938          202 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ--LAMPMDKVK  262 (348)
Q Consensus       202 sgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~--~~g~~~~~~  262 (348)
                      ++||+.++..+.++|++++++.|+|||+||||++++..+||++++|+++..+  ..+++..+.
T Consensus       144 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~  206 (246)
T cd03237         144 AYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR  206 (246)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence            9999999999999999998766899999999999999999999999765433  334555443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1.1e-40  Score=340.80  Aligned_cols=214  Identities=24%  Similarity=0.347  Sum_probs=175.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|++       .+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..-   
T Consensus       330 ~i~~~~v~f~y~~-------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~---  399 (571)
T TIGR02203       330 DVEFRNVTFRYPG-------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY---  399 (571)
T ss_pred             eEEEEEEEEEcCC-------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc---
Confidence            5999999999963       235799999999999999999999999999999999999999999999999864221   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccC-CCCHHHHHHHHHHcCCC---------cCc----cCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA-GIDPQRRAELIKVLDID---------LSW----RMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~---------~~~----~~~~LS  175 (348)
                              ....+++.++|++|++.++.....+++.++.. ..+.++..++++.+++.         .+.    ....||
T Consensus       400 --------~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LS  471 (571)
T TIGR02203       400 --------TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS  471 (571)
T ss_pred             --------CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCC
Confidence                    11245677888887776665544455554433 45666777777766542         122    235699


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++||||++.+|++||||||||+||+.+.+.+++.|.++.  .++|+|+|||+...+ ..||+|++|++|++++.
T Consensus       472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~  548 (571)
T TIGR02203       472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLSTI-EKADRIVVMDDGRIVER  548 (571)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhHHH-HhCCEEEEEeCCEEEee
Confidence            999999999999999999999999999999999999999999874  378999999999876 46999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+.+++.+.
T Consensus       549 g~~~~l~~~  557 (571)
T TIGR02203       549 GTHNELLAR  557 (571)
T ss_pred             CCHHHHHHc
Confidence            999988653

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=2e-40  Score=337.29  Aligned_cols=202  Identities=24%  Similarity=0.262  Sum_probs=156.7

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+++|++        ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++..      
T Consensus         3 ~~i~~~nls~~~~~--------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~------   68 (552)
T TIGR03719         3 YIYTMNRVSKVVPP--------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGI------   68 (552)
T ss_pred             EEEEEeeEEEecCC--------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC------
Confidence            47999999999951        3579999999999999999999999999999999999999999999886421      


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-h-----------------------------------------
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-F-----------------------------------------  146 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------------------------  146 (348)
                           .+.++.+           ....+..+++.+.+ +                                         
T Consensus        69 -----~i~~v~Q-----------~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (552)
T TIGR03719        69 -----KVGYLPQ-----------EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIID  132 (552)
T ss_pred             -----EEEEEec-----------cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHH
Confidence                 1122211           11111111111100 0                                         


Q ss_pred             ccCCC-CHHHHHHHHHHcCCC-cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcC
Q 018938          147 GVAGI-DPQRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG  224 (348)
Q Consensus       147 ~~~~~-~~~~~~~~l~~l~l~-~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g  224 (348)
                      ....+ ...++.++++.+++. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++    +
T Consensus       133 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~  208 (552)
T TIGR03719       133 AADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----P  208 (552)
T ss_pred             hcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----C
Confidence            00000 012345667777774 36788999999999999999999999999999999999999999999999864    3


Q ss_pred             cEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhHHHHh
Q 018938          225 ATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKEA  264 (348)
Q Consensus       225 ~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~  264 (348)
                      .|||+||||++++..+||++++|++|+++ +.|+.+++.+.
T Consensus       209 ~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~~  249 (552)
T TIGR03719       209 GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQ  249 (552)
T ss_pred             CeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHHH
Confidence            59999999999999999999999999976 67888877653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-41  Score=304.66  Aligned_cols=205  Identities=22%  Similarity=0.387  Sum_probs=176.9

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCC
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFE  132 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (348)
                      .+| +++|+++.-.+++|.|+||||||||+|+|+|+.+|+.|.|.++|....+...     .+ ++ ...+++++|++|+
T Consensus        13 ~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k-----~i-~l-p~~~RriGYVFQD   84 (352)
T COG4148          13 FAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEK-----GI-FL-PPEKRRIGYVFQD   84 (352)
T ss_pred             eEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccC-----Cc-cc-ChhhheeeeEeec
Confidence            344 5899998867999999999999999999999999999999999987643221     11 11 1245788999888


Q ss_pred             ccccccchHH-HHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHH
Q 018938          133 VPIQMDVSAE-KMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR  209 (348)
Q Consensus       133 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~  209 (348)
                      ..+++.+++. ++.++.........+++...+|+.  ++++|.+|||||||||+|+|||+..|++|+||||.++||...+
T Consensus        85 ARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK  164 (352)
T COG4148          85 ARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK  164 (352)
T ss_pred             cccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence            7777777665 444555444556778899999997  5899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhh
Q 018938          210 ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       210 ~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  265 (348)
                      .+++-+|+++.++.+..|++|||.++++.++||+|++|++|++.+.|+.++++...
T Consensus       165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~  220 (352)
T COG4148         165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP  220 (352)
T ss_pred             hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999998754

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=2e-40  Score=339.13  Aligned_cols=214  Identities=21%  Similarity=0.301  Sum_probs=174.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|++.      .++++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.++..-   
T Consensus       337 ~i~~~~v~f~y~~~------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~---  407 (576)
T TIGR02204       337 EIEFEQVNFAYPAR------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL---  407 (576)
T ss_pred             eEEEEEEEEECCCC------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc---
Confidence            59999999999631      125799999999999999999999999999999999999999999999999764321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSg  176 (348)
                              ....+++.++|.+|++.++.....+++.++.+..+.++..++++..++.         .    ......|||
T Consensus       408 --------~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSg  479 (576)
T TIGR02204       408 --------DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG  479 (576)
T ss_pred             --------CHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCH
Confidence                    1124566788887776665554455555544444555666666665531         1    123457999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++||||++.+|++||||||||+||+.+++.+++.|+++.  .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus       480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g  556 (576)
T TIGR02204       480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQG  556 (576)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHH-hCCEEEEEECCEEEeee
Confidence            99999999999999999999999999999999999999999874  3799999999998875 69999999999999999


Q ss_pred             ChhHHHH
Q 018938          257 PMDKVKE  263 (348)
Q Consensus       257 ~~~~~~~  263 (348)
                      +.+++.+
T Consensus       557 ~~~~l~~  563 (576)
T TIGR02204       557 THAELIA  563 (576)
T ss_pred             cHHHHHH
Confidence            9888754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=5.6e-40  Score=306.70  Aligned_cols=198  Identities=23%  Similarity=0.311  Sum_probs=148.3

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      ..+.|+++|+++..           +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|...   
T Consensus        36 ~~~~l~i~nls~~~-----------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~---  101 (282)
T cd03291          36 DDNNLFFSNLCLVG-----------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRIS---  101 (282)
T ss_pred             CCCeEEEEEEEEec-----------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEE---
Confidence            34579999999852           4699999999999999999999999999999999999999999999987421   


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHK  173 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~  173 (348)
                                |+.           +...++.....+++.+... .......++++.+++.             ....+.+
T Consensus       102 ----------yv~-----------q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~  159 (282)
T cd03291         102 ----------FSS-----------QFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGIT  159 (282)
T ss_pred             ----------EEe-----------CcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCc
Confidence                      111           1111111111112211111 0111112222222221             1234679


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHH-HHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL-RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l-~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      ||||||||++|||||+.+|++|||||||+|||+.++..+.+.+ ..+.  .+.|||++||+++++. .||++++|++|++
T Consensus       160 LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~~~-~~d~i~~l~~G~i  236 (282)
T cd03291         160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSS  236 (282)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChHHHH-hCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999865 4543  3789999999999985 7999999999999


Q ss_pred             eeecChhHHHH
Q 018938          253 QLAMPMDKVKE  263 (348)
Q Consensus       253 ~~~g~~~~~~~  263 (348)
                      +..|+++++..
T Consensus       237 ~~~g~~~~~~~  247 (282)
T cd03291         237 YFYGTFSELQS  247 (282)
T ss_pred             EEECCHHHHHh
Confidence            99999888764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=4.3e-40  Score=339.61  Aligned_cols=222  Identities=22%  Similarity=0.265  Sum_probs=160.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc-
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA-  108 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~-  108 (348)
                      +|+++||+++|+         ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|........ 
T Consensus         3 ~l~i~~ls~~~~---------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q   73 (635)
T PRK11147          3 LISIHGAWLSFS---------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQ   73 (635)
T ss_pred             EEEEeeEEEEeC---------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEecc
Confidence            799999999994         4679999999999999999999999999999999999999999999998742110000 


Q ss_pred             ccccCcccccchhhhhhhhhcC--C-----------Cccccccch-HHHH---HhccCCC-CHHHHHHHHHHcCCCcCcc
Q 018938          109 LTSSGDLSYLGGEWRREVAFAG--F-----------EVPIQMDVS-AEKM---IFGVAGI-DPQRRAELIKVLDIDLSWR  170 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~-~~~~---~~~~~~~-~~~~~~~~l~~l~l~~~~~  170 (348)
                      ........++.+..........  .           .......+. ....   +...... ...++.++++.+++..+++
T Consensus        74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~  153 (635)
T PRK11147         74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAA  153 (635)
T ss_pred             CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCc
Confidence            0000011111110000000000  0           000000000 0000   0000111 1345678899999877788


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|+++    +.|||+||||++++..+||+|++|++|
T Consensus       154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~L~~G  229 (635)
T PRK11147        154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVDLDRG  229 (635)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence            9999999999999999999999999999999999999999999999876    359999999999999999999999999


Q ss_pred             EEe-eecChhHHHHh
Q 018938          251 KLQ-LAMPMDKVKEA  264 (348)
Q Consensus       251 ~i~-~~g~~~~~~~~  264 (348)
                      +++ +.|+...+...
T Consensus       230 ~i~~~~g~~~~~~~~  244 (635)
T PRK11147        230 KLVSYPGNYDQYLLE  244 (635)
T ss_pred             EEEEecCCHHHHHHH
Confidence            997 45888776543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=1e-40  Score=282.11  Aligned_cols=144  Identities=33%  Similarity=0.460  Sum_probs=129.3

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++|++++|+         +.++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|..        
T Consensus         1 l~~~~l~~~~~---------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~--------   63 (144)
T cd03221           1 IELENLSKTYG---------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV--------   63 (144)
T ss_pred             CEEEEEEEEEC---------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE--------
Confidence            46899999995         3479999999999999999999999999999999999999999999987731        


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~  190 (348)
                                    .++|.++                                          ||+||+||++|||||+.
T Consensus        64 --------------~i~~~~~------------------------------------------lS~G~~~rv~laral~~   87 (144)
T cd03221          64 --------------KIGYFEQ------------------------------------------LSGGEKMRLALAKLLLE   87 (144)
T ss_pred             --------------EEEEEcc------------------------------------------CCHHHHHHHHHHHHHhc
Confidence                          1122211                                          99999999999999999


Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      +|+++||||||++||+.++..+.+.|+++    +.|||++||+++++..+||++++|++|+
T Consensus        88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221          88 NPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            99999999999999999999999999875    4699999999999999999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.1e-40  Score=301.79  Aligned_cols=186  Identities=24%  Similarity=0.297  Sum_probs=147.9

Q ss_pred             eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcccc--c
Q 018938           60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ--M  137 (348)
Q Consensus        60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  137 (348)
                      |+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..                .++.++|+++.....  .
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----------------~~~~i~~v~q~~~~~~~~   64 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK----------------GWRHIGYVPQRHEFAWDF   64 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH----------------hhCcEEEecccccccCCC
Confidence            6789999999999999999999999999999999999999975310                112344443332221  1


Q ss_pred             cchHHHHH-hcc------C-CC---CHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCC
Q 018938          138 DVSAEKMI-FGV------A-GI---DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDL  204 (348)
Q Consensus       138 ~~~~~~~~-~~~------~-~~---~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgL  204 (348)
                      ..+..+.+ +..      . ..   ...++.++++.+++.  .+.++.+|||||||||+|||||+.+|++|||||||++|
T Consensus        65 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L  144 (223)
T TIGR03771        65 PISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL  144 (223)
T ss_pred             CccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            22333322 111      0 01   123456788888886  36678999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          205 DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       205 D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      |+.++..+.++|+++++ .|.|||++|||++++..+||+++++ +|+++..++.+++.+
T Consensus       145 D~~~~~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~  201 (223)
T TIGR03771       145 DMPTQELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD  201 (223)
T ss_pred             CHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence            99999999999999864 4899999999999999999999999 899999999888754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=1.3e-40  Score=293.96  Aligned_cols=177  Identities=25%  Similarity=0.342  Sum_probs=136.1

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG  130 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....     .    ...+++.++|++
T Consensus         4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-----~----~~~~~~~i~~~~   74 (190)
T TIGR01166         4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK-----G----LLERRQRVGLVF   74 (190)
T ss_pred             ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcccccc-----c----hHHHHhhEEEEe
Confidence            4679999999999999999999999999999999999999999999999986521100     0    011234456655


Q ss_pred             CCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeecc
Q 018938          131 FEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI  200 (348)
Q Consensus       131 ~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEP  200 (348)
                      ++.. .....+..+ +.+..  .....    +++.++++.+++.  .++++.+||||||||++|||||+.+|++||||||
T Consensus        75 q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  154 (190)
T TIGR01166        75 QDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP  154 (190)
T ss_pred             cChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            5431 111223333 22211  12221    2456778888885  4678899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938          201 TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  237 (348)
Q Consensus       201 tsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~  237 (348)
                      |+|||+.++..+.++|+++.+ .|.|||++|||++++
T Consensus       155 t~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~~~  190 (190)
T TIGR01166       155 TAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVDLA  190 (190)
T ss_pred             cccCCHHHHHHHHHHHHHHHH-cCCEEEEEeeccccC
Confidence            999999999999999999865 489999999998763

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=6.6e-40  Score=333.67  Aligned_cols=202  Identities=22%  Similarity=0.289  Sum_probs=160.1

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||++.|+         ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..     
T Consensus       322 ~~~l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~-----  387 (556)
T PRK11819        322 DKVIEAENLSKSFG---------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETV-----  387 (556)
T ss_pred             CeEEEEEeEEEEEC---------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCce-----
Confidence            35899999999994         3579999999999999999999999999999999999999999999884310     


Q ss_pred             cccccCcccccchhhhhhhhhcCCCc-cccccchHHHHH-hcc--CC--CCHHHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMI-FGV--AG--IDPQRRAELIKVLDID---LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~--~~~~~~~~~l~~l~l~---~~~~~~~LSgGq  178 (348)
                            .+           +|+++.. .+...+++.+.+ +..  ..  ........+++.+++.   .++++.+|||||
T Consensus       388 ------~i-----------~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~  450 (556)
T PRK11819        388 ------KL-----------AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGE  450 (556)
T ss_pred             ------EE-----------EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHH
Confidence                  12           2222221 122223333322 211  11  1123345688889884   367899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC-CEEe-eec
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH-GKLQ-LAM  256 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~-G~i~-~~g  256 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|.++    +.|||+||||++++..+||++++|++ |++. ..|
T Consensus       451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g  526 (556)
T PRK11819        451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF----PGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEG  526 (556)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecC
Confidence            99999999999999999999999999999999999999876    23899999999999999999999986 7876 578


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +.+++.+.
T Consensus       527 ~~~~~~~~  534 (556)
T PRK11819        527 NFQEYEED  534 (556)
T ss_pred             CHHHHHHH
Confidence            87776554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=6.1e-40  Score=333.75  Aligned_cols=201  Identities=22%  Similarity=0.295  Sum_probs=158.4

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||+++|+         ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..     
T Consensus       320 ~~~l~~~~l~~~~~---------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~-----  385 (552)
T TIGR03719       320 DKVIEAENLSKGFG---------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETV-----  385 (552)
T ss_pred             CeEEEEeeEEEEEC---------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCce-----
Confidence            45899999999994         3579999999999999999999999999999999999999999999884320     


Q ss_pred             cccccCcccccchhhhhhhhhcCCCcc-ccccchHHHHH-hccC--CC--CHHHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEKMI-FGVA--GI--DPQRRAELIKVLDID---LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~--~~~~~~~~l~~l~l~---~~~~~~~LSgGq  178 (348)
                            .+           +|+++... .....++.+.+ +...  ..  ......++++.+++.   .++++.+|||||
T Consensus       386 ------~i-----------~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe  448 (552)
T TIGR03719       386 ------KL-----------AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGE  448 (552)
T ss_pred             ------EE-----------EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHH
Confidence                  12           22222211 22223333322 2211  11  122345688888884   367899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC-CEEe-eec
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH-GKLQ-LAM  256 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~-G~i~-~~g  256 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|+++    +.|||+||||++++..+||++++|++ |++. +.|
T Consensus       449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g  524 (552)
T TIGR03719       449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF----AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEG  524 (552)
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC----CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCC
Confidence            99999999999999999999999999999999999999876    23899999999999999999999986 5876 557


Q ss_pred             ChhHHHH
Q 018938          257 PMDKVKE  263 (348)
Q Consensus       257 ~~~~~~~  263 (348)
                      +.+++.+
T Consensus       525 ~~~~~~~  531 (552)
T TIGR03719       525 NYSEYEE  531 (552)
T ss_pred             CHHHHHH
Confidence            7766543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=6e-40  Score=340.22  Aligned_cols=200  Identities=23%  Similarity=0.331  Sum_probs=158.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||++.|++        ...+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++..      
T Consensus       507 ~~L~~~~ls~~y~~--------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~------  572 (718)
T PLN03073        507 PIISFSDASFGYPG--------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV------  572 (718)
T ss_pred             ceEEEEeeEEEeCC--------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce------
Confidence            68999999999952        3569999999999999999999999999999999999999999999876421      


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHH--Hh-ccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM--IF-GVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv  182 (348)
                           .+.|+.+           .............  .. .......+++.++++.+++.   .++++.+|||||||||
T Consensus       573 -----~igyv~Q-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv  636 (718)
T PLN03073        573 -----RMAVFSQ-----------HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  636 (718)
T ss_pred             -----eEEEEec-----------cccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHH
Confidence                 1222221           1100001111101  10 11223455677889999985   3678999999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhHH
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKV  261 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  261 (348)
                      +|||||+.+|++|||||||+|||+.++..+.+.|.++    +.|||+||||++++..+||++++|++|+++ +.|+.+++
T Consensus       637 aLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~  712 (718)
T PLN03073        637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY  712 (718)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            9999999999999999999999999999998888754    349999999999999999999999999998 67776655


Q ss_pred             H
Q 018938          262 K  262 (348)
Q Consensus       262 ~  262 (348)
                      .
T Consensus       713 ~  713 (718)
T PLN03073        713 K  713 (718)
T ss_pred             H
Confidence            3

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=4.9e-40  Score=334.23  Aligned_cols=202  Identities=20%  Similarity=0.302  Sum_probs=161.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|++|+|++        +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....  
T Consensus       322 ~i~~~~v~f~y~~--------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--  391 (547)
T PRK10522        322 TLELRNVTFAYQD--------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ--  391 (547)
T ss_pred             eEEEEEEEEEeCC--------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC--
Confidence            6999999999952        356999999999999999999999999999999999999999999999998653211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcC-----c--cCCCCCHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLS-----W--RMHKVSDGQRRRV  182 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----~--~~~~LSgGqrQRv  182 (348)
                               ...+++.+++++++..++.....++    ....+.+...++++.+++...     .  ....||||||||+
T Consensus       392 ---------~~~~~~~i~~v~q~~~lf~~ti~~n----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl  458 (547)
T PRK10522        392 ---------PEDYRKLFSAVFTDFHLFDQLLGPE----GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRL  458 (547)
T ss_pred             ---------HHHHhhheEEEecChhHHHHhhccc----cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHH
Confidence                     1234566777766554433221111    112234556677777776421     1  1358999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      +|||||+++|++|||||||++||+++...+.+.+.+..++.++|+|+|||+++.+. .||+|++|++|++++.
T Consensus       459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSEL  530 (547)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999988765445899999999998764 7999999999999876

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.7e-40  Score=292.39  Aligned_cols=188  Identities=15%  Similarity=0.275  Sum_probs=145.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++|++++|+         ++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++....  
T Consensus         1 ~l~~~~l~~~~~---------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~--   68 (195)
T PRK13541          1 MLSLHQLQFNIE---------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA--   68 (195)
T ss_pred             CeEEEEeeEEEC---------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh--
Confidence            478999999994         345555 99999999999999999999999999999999999999999997542110  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC  185 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA  185 (348)
                                   ...++|.++........+..+.+ +.... ...+.+.++++.+++.  .++.+.+||||||||++||
T Consensus        69 -------------~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la  135 (195)
T PRK13541         69 -------------KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIA  135 (195)
T ss_pred             -------------hhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHH
Confidence                         01123333332222333433322 21111 1234566778888875  3667899999999999999


Q ss_pred             HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          186 MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       186 raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                      |||+.+|++|||||||++||+.++..+.++|++.. +.|.|||++||+++++.. ||.+
T Consensus       136 ~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~-~~~~  192 (195)
T PRK13541        136 RLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLESSIKS-AQIL  192 (195)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCccccch-hhee
Confidence            99999999999999999999999999999998754 458999999999998875 6655

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=9.7e-40  Score=326.01  Aligned_cols=211  Identities=31%  Similarity=0.397  Sum_probs=157.7

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++|++++|+         .+++|+++||+|.+|+++||||+||||||||||+|+|.+.|++|+|...+..      
T Consensus         2 ~~i~~~~ls~~~g---------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~------   66 (530)
T COG0488           2 SMITLENLSLAYG---------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL------   66 (530)
T ss_pred             ceEEEeeeEEeeC---------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCc------
Confidence            4799999999994         5789999999999999999999999999999999999999999999886521      


Q ss_pred             ccccCcccccchhh--------hhhhhhcCCC---------------ccccccchHHHH---HhccCCCC-HHHHHHHHH
Q 018938          109 LTSSGDLSYLGGEW--------RREVAFAGFE---------------VPIQMDVSAEKM---IFGVAGID-PQRRAELIK  161 (348)
Q Consensus       109 ~~~~~~~~~~~~~~--------~~~~~~~~~~---------------~~~~~~~~~~~~---~~~~~~~~-~~~~~~~l~  161 (348)
                           .++++.+..        ...+ +....               ...........+   ......+. ..++..++.
T Consensus        67 -----~v~~l~Q~~~~~~~~tv~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~  140 (530)
T COG0488          67 -----RVGYLSQEPPLDPEKTVLDYV-IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL  140 (530)
T ss_pred             -----eEEEeCCCCCcCCCccHHHHH-HhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHh
Confidence                 011111100        0000 00000               000000000000   00011122 245567777


Q ss_pred             HcCCCc-CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh
Q 018938          162 VLDIDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW  240 (348)
Q Consensus       162 ~l~l~~-~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~  240 (348)
                      .+++.. ++++++||||||.||+||+||+.+|++||||||||+||..+..++.++|+++   .| |||+||||.+|+..+
T Consensus       141 gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V  216 (530)
T COG0488         141 GLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNV  216 (530)
T ss_pred             cCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHH
Confidence            788765 6889999999999999999999999999999999999999999999999864   36 999999999999999


Q ss_pred             CCEEEEEcCCEEe-eecChhHHHHh
Q 018938          241 PSHIVYVAHGKLQ-LAMPMDKVKEA  264 (348)
Q Consensus       241 ~d~v~~l~~G~i~-~~g~~~~~~~~  264 (348)
                      |++|+.++.|++. +.|+.+.+.+.
T Consensus       217 ~t~I~~ld~g~l~~y~Gny~~~~~~  241 (530)
T COG0488         217 ATHILELDRGKLTPYKGNYSSYLEQ  241 (530)
T ss_pred             hhheEEecCCceeEecCCHHHHHHH
Confidence            9999999999885 55788776554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=3.5e-40  Score=287.36  Aligned_cols=158  Identities=23%  Similarity=0.277  Sum_probs=134.5

Q ss_pred             eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccC
Q 018938           34 NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG  113 (348)
Q Consensus        34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~  113 (348)
                      .||+|+|+         ++.+++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..+          
T Consensus         4 ~~l~~~~~---------~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i----------   63 (177)
T cd03222           4 PDCVKRYG---------VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP----------   63 (177)
T ss_pred             CCeEEEEC---------CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE----------
Confidence            58999994         46788884 99999999999999999999999999999999999999987521          


Q ss_pred             cccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCc
Q 018938          114 DLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFK  193 (348)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~  193 (348)
                                   ++.++..                                       .||||||||++|||||+.+|+
T Consensus        64 -------------~~~~q~~---------------------------------------~LSgGq~qrv~laral~~~p~   91 (177)
T cd03222          64 -------------VYKPQYI---------------------------------------DLSGGELQRVAIAAALLRNAT   91 (177)
T ss_pred             -------------EEEcccC---------------------------------------CCCHHHHHHHHHHHHHhcCCC
Confidence                         1111100                                       099999999999999999999


Q ss_pred             EEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee--cChhHHHH
Q 018938          194 VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA--MPMDKVKE  263 (348)
Q Consensus       194 lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~--g~~~~~~~  263 (348)
                      ++||||||++||+.++..+.++|.+++++.+.|||++|||++++..+||++++|+++-.+..  +++...++
T Consensus        92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~  163 (177)
T cd03222          92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTRE  163 (177)
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhH
Confidence            99999999999999999999999998755348999999999999999999999998766544  55554443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=5.4e-40  Score=334.70  Aligned_cols=195  Identities=24%  Similarity=0.270  Sum_probs=157.3

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++|++++|+         + ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ .      
T Consensus       338 ~~~l~~~~ls~~~~---------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~------  400 (590)
T PRK13409        338 ETLVEYPDLTKKLG---------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L------  400 (590)
T ss_pred             ceEEEEcceEEEEC---------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e------
Confidence            46899999999994         2 35999999999999999999999999999999999999999998774 1      


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-ccCCC-CHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVAGI-DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~  183 (348)
                            .++|+           ++........++.+++. ..... ......++++.+++.  .++++.+|||||||||+
T Consensus       401 ------~i~y~-----------~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRva  463 (590)
T PRK13409        401 ------KISYK-----------PQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVA  463 (590)
T ss_pred             ------eEEEe-----------cccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHH
Confidence                  12222           22211122333433321 11111 123456788889886  47789999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+.+|++|||||||+|||+.++..+.++|++++++.|.|||+||||++++..+|||+++|+ |++...|.
T Consensus       464 iAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~  536 (590)
T PRK13409        464 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH  536 (590)
T ss_pred             HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence            99999999999999999999999999999999999987678999999999999999999999996 47776665

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=1.4e-39  Score=292.74  Aligned_cols=185  Identities=15%  Similarity=0.202  Sum_probs=143.1

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE-EcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK-VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~-i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      .+|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|. ++|....             ++           +
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-------------~~-----------~   56 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------------LG-----------A   56 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-------------cc-----------c
Confidence            379999999999999999999999999999999999999999986 6654210             00           0


Q ss_pred             CccccccchHHHHH-h--ccCCCCHHH-HHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCC
Q 018938          132 EVPIQMDVSAEKMI-F--GVAGIDPQR-RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD  205 (348)
Q Consensus       132 ~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD  205 (348)
                      ...+...++..+++ +  ...+..... ...+.+.+++.  .++++.+||||||||++|||||+.+|+++||||||++||
T Consensus        57 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD  136 (213)
T PRK15177         57 NSFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGD  136 (213)
T ss_pred             ccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCC
Confidence            01111222333322 1  111223222 22333445554  366789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          206 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       206 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      +.++..+.+.+.+..+  +.|+|++||+++++..+||++++|++|++++.++.++...
T Consensus       137 ~~~~~~~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  192 (213)
T PRK15177        137 NATQLRMQAALACQLQ--QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA  192 (213)
T ss_pred             HHHHHHHHHHHHHHhh--CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence            9999999998866543  4689999999999999999999999999999998887753

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5e-40  Score=276.85  Aligned_cols=233  Identities=25%  Similarity=0.324  Sum_probs=178.8

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .|.+++.+|||.|+         .....++|||++.+||+.+|+|+||||||||++||+|-+.|+.|+|.+.-..-. ..
T Consensus         4 ~PLL~V~~lsk~Yg---------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~-~~   73 (258)
T COG4107           4 KPLLSVSGLSKLYG---------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQ-PR   73 (258)
T ss_pred             CcceeehhhhhhhC---------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCC-ch
Confidence            46899999999995         456899999999999999999999999999999999999999999987432100 00


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccc--cccchH-----HH-HHhccC--CCCHHHHHHHHHHcCCCc---CccCCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPI--QMDVSA-----EK-MIFGVA--GIDPQRRAELIKVLDIDL---SWRMHKV  174 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~-~~~~~~--~~~~~~~~~~l~~l~l~~---~~~~~~L  174 (348)
                      .+....+.. -..-.+..++|+.+.+..  .+..++     +. +..+..  +.-.....++++.+.++.   +..|.++
T Consensus        74 dl~~msEae-RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtF  152 (258)
T COG4107          74 DLYTMSEAE-RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTF  152 (258)
T ss_pred             hHhhhchHH-HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCccccc
Confidence            000000000 000123456666443322  122221     11 111211  112344567888888864   5578999


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||||+||+.|||-|+..|+++++||||.|||..-+..++++++.+..+.|.++++||||+..+.-+++|.++|++|++++
T Consensus       153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve  232 (258)
T COG4107         153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE  232 (258)
T ss_pred             chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecChhHHHHhhhhhhHH
Q 018938          255 AMPMDKVKEASKLSLMR  271 (348)
Q Consensus       255 ~g~~~~~~~~~~~~~~~  271 (348)
                      .|-++.+...+.+.+.+
T Consensus       233 ~GLTDrvLDDP~hPYTQ  249 (258)
T COG4107         233 SGLTDRVLDDPHHPYTQ  249 (258)
T ss_pred             cccccccccCCCCchHH
Confidence            99999998887776544

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=6.8e-40  Score=312.44  Aligned_cols=184  Identities=23%  Similarity=0.344  Sum_probs=150.1

Q ss_pred             EECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc
Q 018938           70 LVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV  148 (348)
Q Consensus        70 liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  148 (348)
                      |+||||||||||+|+|+|+++|++|+|.++|+++....             ..++.++|++++..++..++..++ .++.
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-------------~~~~~i~~v~q~~~l~~~~tv~enl~~~~   67 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-------------PHLRHINMVFQSYALFPHMTVEENVAFGL   67 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-------------HHHCCEEEEecCccccCCCcHHHHHHHHH
Confidence            68999999999999999999999999999998653211             112345666555545545555443 2222


Q ss_pred             --CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHH
Q 018938          149 --AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  220 (348)
Q Consensus       149 --~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~  220 (348)
                        .+..    .+++.++++.+++.  .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.
T Consensus        68 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~  147 (325)
T TIGR01187        68 KMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ  147 (325)
T ss_pred             hhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence              1222    13456788888886  477899999999999999999999999999999999999999999999999998


Q ss_pred             HhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhhh
Q 018938          221 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       221 ~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~  266 (348)
                      ++.|.|||+||||++++..+||++++|++|+++..|+++++...+.
T Consensus       148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~  193 (325)
T TIGR01187       148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPA  193 (325)
T ss_pred             HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            7779999999999999999999999999999999999999876543

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.2e-39  Score=336.37  Aligned_cols=200  Identities=22%  Similarity=0.345  Sum_probs=158.2

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||+++|+         ++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+ |..+    
T Consensus       317 ~~~l~~~~l~~~~~---------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----  382 (635)
T PRK11147        317 KIVFEMENVNYQID---------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----  382 (635)
T ss_pred             CceEEEeeeEEEEC---------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----
Confidence            45899999999994         357999999999999999999999999999999999999999999988 4311    


Q ss_pred             cccccCcccccchhhhhhhhhcCCCc-cccccchHHHHH-hccCCC--C--HHHHHHHHHHcCCC---cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMI-FGVAGI--D--PQRRAELIKVLDID---LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--~--~~~~~~~l~~l~l~---~~~~~~~LSgGq  178 (348)
                            .+.           |.++.. .+....++.+.+ +.....  .  ...+.+++..+++.   .++++.+|||||
T Consensus       383 ------~i~-----------y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe  445 (635)
T PRK11147        383 ------EVA-----------YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGE  445 (635)
T ss_pred             ------EEE-----------EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHH
Confidence                  122           222211 122223333322 211111  1  33456778888874   367899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc-CCEEee-ec
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA-HGKLQL-AM  256 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~-~G~i~~-~g  256 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..+.++|+++    +.|||+||||++++..+||++++|+ +|++.. .|
T Consensus       446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g  521 (635)
T PRK11147        446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVG  521 (635)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccC
Confidence            99999999999999999999999999999999999988764    4599999999999999999999997 899865 57


Q ss_pred             ChhHHH
Q 018938          257 PMDKVK  262 (348)
Q Consensus       257 ~~~~~~  262 (348)
                      +.+++.
T Consensus       522 ~y~~y~  527 (635)
T PRK11147        522 GYHDAR  527 (635)
T ss_pred             CHHHHH
Confidence            777764

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1.7e-39  Score=330.64  Aligned_cols=208  Identities=20%  Similarity=0.268  Sum_probs=160.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+|+|++.++    ..+++|+|+||++++|++++|+||||||||||+++|+|++.|++|+|.++|.++.... 
T Consensus       336 ~~i~~~~v~f~y~~~~~----~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~-  410 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEG----SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS-  410 (555)
T ss_pred             ceEEEEEEEEEeCCCCC----CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-
Confidence            35999999999963100    0236999999999999999999999999999999999999999999999998653211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCc--C------ccCCCCCHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL--S------WRMHKVSDGQRR  180 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~------~~~~~LSgGqrQ  180 (348)
                                ...+++.+++++++..++.....++.   ....+.++..++++.+++..  .      .....|||||||
T Consensus       411 ----------~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q  477 (555)
T TIGR01194       411 ----------RDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK  477 (555)
T ss_pred             ----------HHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence                      12345667777665544433322221   12223455667788877642  1      123679999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |++|||||+.+|++|||||||++||+.+.+.+.+.+.+..+..++|+|+|||+++.+. .||+|++|++|++++.
T Consensus       478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD  551 (555)
T ss_pred             HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999988664322345899999999998764 7999999999999865

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=5.6e-40  Score=338.40  Aligned_cols=197  Identities=19%  Similarity=0.269  Sum_probs=160.5

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC--CceEEEcCeeccccccccccCcccccchhhhhhhhh
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE--PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF  128 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~--~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      ++.+|+|+||++++||+++|+||||||||||+++|+|..+|+  +|+|.++|++...               ..++.++|
T Consensus        80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---------------~~~~~i~y  144 (659)
T PLN03211         80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---------------QILKRTGF  144 (659)
T ss_pred             CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---------------hhccceEE
Confidence            467999999999999999999999999999999999998875  8999999976421               11234566


Q ss_pred             cCCCccccccchHHHHH-hc--c--C-CCCH----HHHHHHHHHcCCCc-------CccCCCCCHHHHHHHHHHHHHccC
Q 018938          129 AGFEVPIQMDVSAEKMI-FG--V--A-GIDP----QRRAELIKVLDIDL-------SWRMHKVSDGQRRRVQICMGLLKP  191 (348)
Q Consensus       129 ~~~~~~~~~~~~~~~~~-~~--~--~-~~~~----~~~~~~l~~l~l~~-------~~~~~~LSgGqrQRv~lAraL~~~  191 (348)
                      +.++......+++.+.+ +.  .  . ....    ++++++++.+++..       ++.+..|||||||||+||++|+.+
T Consensus       145 v~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~  224 (659)
T PLN03211        145 VTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN  224 (659)
T ss_pred             ECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence            65555554455555433 21  1  1 1222    23567888888852       235678999999999999999999


Q ss_pred             CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          192 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       192 P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      |++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|++++.|+++++.+
T Consensus       225 P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~  296 (659)
T PLN03211        225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA  296 (659)
T ss_pred             CCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence            999999999999999999999999999875 5999999999998 5889999999999999999999988764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1.4e-39  Score=358.93  Aligned_cols=216  Identities=21%  Similarity=0.261  Sum_probs=178.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC------------------
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV------------------   91 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~------------------   91 (348)
                      .|+++||+|+|++.      .+.++|+|+||+|++|+++||+||||||||||+++|+|++.|                  
T Consensus      1165 ~I~f~nVsF~Y~~~------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~ 1238 (1466)
T PTZ00265       1165 KIEIMDVNFRYISR------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTN 1238 (1466)
T ss_pred             eEEEEEEEEECCCC------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccc
Confidence            59999999999631      135799999999999999999999999999999999999998                  


Q ss_pred             ------------------------------------CCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccc
Q 018938           92 ------------------------------------EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPI  135 (348)
Q Consensus        92 ------------------------------------~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (348)
                                                          ++|+|.++|.++..-           ....+++.+++++|++.+
T Consensus      1239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~-----------~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265       1239 EQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY-----------NLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhC-----------CHHHHHhhccEeCCCCcc
Confidence                                                589999999875321           123567889999888777


Q ss_pred             cccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCC
Q 018938          136 QMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV  202 (348)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPts  202 (348)
                      +.....+++.++....+.+.+.++++..++.         .+    .....||||||||++|||||+++|+|||||||||
T Consensus      1308 F~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTS 1387 (1466)
T PTZ00265       1308 FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATS 1387 (1466)
T ss_pred             ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence            6655556666665555666666666665431         12    2346799999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC----CEEe-eecChhHHHH
Q 018938          203 DLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH----GKLQ-LAMPMDKVKE  263 (348)
Q Consensus       203 gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~----G~i~-~~g~~~~~~~  263 (348)
                      +||+++.+.+.+.|.++....++|+|+|||++..+. .||+|++|++    |+++ +.|+.+++.+
T Consensus      1388 aLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1388 SLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             ccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence            999999999999999874234899999999999886 5999999999    9955 8999999875

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=7.2e-40  Score=301.94  Aligned_cols=199  Identities=21%  Similarity=0.229  Sum_probs=148.0

Q ss_pred             eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE-----------EcCee
Q 018938           34 NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK-----------VLGRS  102 (348)
Q Consensus        34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~-----------i~G~~  102 (348)
                      .+|+|+|+.        .+.+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|.           ++|.+
T Consensus         4 ~~~~~~y~~--------~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~   74 (255)
T cd03236           4 DEPVHRYGP--------NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE   74 (255)
T ss_pred             cCcceeecC--------cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCch
Confidence            488999952        2469999995 999999999999999999999999999999999996           44433


Q ss_pred             ccccccccccCcccccchhhh--hhhhhcCCCccccccchHHHHHhccCCC-CHHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938          103 AFHDTALTSSGDLSYLGGEWR--REVAFAGFEVPIQMDVSAEKMIFGVAGI-DPQRRAELIKVLDID--LSWRMHKVSDG  177 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~--~~~~~~~LSgG  177 (348)
                      +....           ....+  ..+++..+............+....... ......++++.+++.  .++.+.+||||
T Consensus        75 ~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G  143 (255)
T cd03236          75 LQNYF-----------TKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGG  143 (255)
T ss_pred             hhhhh-----------HHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHH
Confidence            21100           00000  0122322222222111112221111111 124567788889886  36778999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||||++|||||+.+|+++||||||++||+.++..+.++|+++.+ .++|||++|||++++..+||+|++|+ |++.+
T Consensus       144 ~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~  218 (255)
T cd03236         144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA  218 (255)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence            99999999999999999999999999999999999999999875 48999999999999999999999995 55654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=8.9e-40  Score=277.33  Aligned_cols=233  Identities=17%  Similarity=0.306  Sum_probs=181.3

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      +.++++||+|.|....+-.......+++.|||++++|+.++|||.||||||||.|+|+|.++|++|+|.++|+....+..
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy   82 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY   82 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence            47899999999843211000123568999999999999999999999999999999999999999999999986532211


Q ss_pred             ccccCcccccchhhhhhhh--hcCCCccccccchHHHHHhc---c-CCCCH----HHHHHHHHHcCCCc---CccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVA--FAGFEVPIQMDVSAEKMIFG---V-AGIDP----QRRAELIKVLDIDL---SWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~-~~~~~----~~~~~~l~~l~l~~---~~~~~~LS  175 (348)
                             .+    ..+.+.  |++....+++.+....++-.   + ..++.    +++.+.+..+|+-.   +.+++.||
T Consensus        83 -------~~----R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la  151 (267)
T COG4167          83 -------SF----RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLA  151 (267)
T ss_pred             -------Hh----hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcC
Confidence                   11    012222  33222233333333332211   1 12222    34556677788743   56799999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      -||||||+|||||+.+|+++|.||..++||...+.++.+++.++.++.|.+.|+|+.++..+..++|.|+||++|++++.
T Consensus       152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~  231 (267)
T COG4167         152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER  231 (267)
T ss_pred             chhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhHHHHhhhhhhHHH
Q 018938          256 MPMDKVKEASKLSLMRT  272 (348)
Q Consensus       256 g~~~~~~~~~~~~~~~~  272 (348)
                      |.+.+++..+.+...+.
T Consensus       232 G~t~~v~a~P~~~~TkR  248 (267)
T COG4167         232 GSTADVLASPLHELTKR  248 (267)
T ss_pred             CChhhhhcCCccHHHHH
Confidence            99999999887765543

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=8e-39  Score=355.24  Aligned_cols=214  Identities=18%  Similarity=0.237  Sum_probs=177.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|++       +..++|+|+||+|++||.+||+|+||||||||+++|.|++.|++|+|.++|.++..-   
T Consensus      1234 ~I~f~nVsf~Y~~-------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i--- 1303 (1495)
T PLN03232       1234 SIKFEDVHLRYRP-------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKF--- 1303 (1495)
T ss_pred             cEEEEEEEEEECC-------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhC---
Confidence            5999999999953       235799999999999999999999999999999999999999999999999875321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg  176 (348)
                              -...+++.+++++|++.++.. +..+++......+.+++.++++..++.         .+    .....|||
T Consensus      1304 --------~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1374 (1495)
T PLN03232       1304 --------GLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSV 1374 (1495)
T ss_pred             --------CHHHHHhhcEEECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCH
Confidence                    113567888999888766655 444443222234556666666665542         12    23457999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+++|+|||||||||+||+++.+.+.+.|++..  .++|||+|+|+++.+.. ||+|++|++|++++.|
T Consensus      1375 GQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~G 1451 (1495)
T PLN03232       1375 GQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYD 1451 (1495)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999999864  47999999999999976 9999999999999999


Q ss_pred             ChhHHHHhh
Q 018938          257 PMDKVKEAS  265 (348)
Q Consensus       257 ~~~~~~~~~  265 (348)
                      +++++.+..
T Consensus      1452 t~~eLl~~~ 1460 (1495)
T PLN03232       1452 SPQELLSRD 1460 (1495)
T ss_pred             CHHHHHhCC
Confidence            999998643

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=4.3e-39  Score=326.20  Aligned_cols=197  Identities=26%  Similarity=0.373  Sum_probs=160.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|++       +.+++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|.++..-   
T Consensus       320 ~i~~~~v~f~y~~-------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~---  389 (529)
T TIGR02857       320 SLEFSGLSVAYPG-------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA---  389 (529)
T ss_pred             eEEEEEEEEECCC-------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC---
Confidence            6999999999963       235799999999999999999999999999999999999999999999999865321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSg  176 (348)
                              ....+++.+++++|+..++.....+++.++....+.++..++++..++.         .    .....+|||
T Consensus       390 --------~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSg  461 (529)
T TIGR02857       390 --------DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSG  461 (529)
T ss_pred             --------CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCH
Confidence                    1134667788887776665544444554444444556666666665542         1    223567999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      |||||++|||||+++|++||||||||+||+.+.+.+.+.|.++.  .++|+|+|||+++.+. .||+|++|
T Consensus       462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l  529 (529)
T TIGR02857       462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALAE-RADRIVVL  529 (529)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHH-hCCEEEeC
Confidence            99999999999999999999999999999999999999999874  4799999999999885 69999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.8e-39  Score=278.09  Aligned_cols=217  Identities=18%  Similarity=0.266  Sum_probs=173.7

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcC-eeccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLG-RSAFHDT  107 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G-~~~~~~~  107 (348)
                      ++|+++||+++|+         +..||+++||+|.+||.-+|||||||||||++.+|+|.-+|+.|++.++| .++..-.
T Consensus         4 ~iL~~~~vsVsF~---------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~   74 (249)
T COG4674           4 IILYLDGVSVSFG---------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP   74 (249)
T ss_pred             ceEEEeceEEEEc---------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC
Confidence            5799999999995         47899999999999999999999999999999999999999999999998 4332211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHh--------------c-cCCCCHHHHHHHHHHcCCCc--Ccc
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF--------------G-VAGIDPQRRAELIKVLDIDL--SWR  170 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~l~~l~l~~--~~~  170 (348)
                      .    ..+      .+..++--+|.+..+..+++.+++.              . .......+++++++..++..  ++.
T Consensus        75 e----~~I------Ar~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~  144 (249)
T COG4674          75 E----HRI------ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL  144 (249)
T ss_pred             H----HHH------HHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh
Confidence            0    011      1122232233333444444433220              0 11112346788999989864  556


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      ...||-||||++.|++.++++|++|+||||++|+-.....+.-++|+.++.  +.+|++|.|||.|+..++++|.+|++|
T Consensus       145 A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G  222 (249)
T COG4674         145 AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEG  222 (249)
T ss_pred             hhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEecc
Confidence            789999999999999999999999999999999999999999999999964  679999999999999999999999999


Q ss_pred             EEeeecChhHHHHhhh
Q 018938          251 KLQLAMPMDKVKEASK  266 (348)
Q Consensus       251 ~i~~~g~~~~~~~~~~  266 (348)
                      .+.+.|+.+++...+.
T Consensus       223 ~VL~EGsld~v~~dp~  238 (249)
T COG4674         223 SVLAEGSLDEVQNDPK  238 (249)
T ss_pred             ceeecccHHHhhcCcc
Confidence            9999999999876544

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=8.8e-39  Score=355.60  Aligned_cols=213  Identities=16%  Similarity=0.220  Sum_probs=176.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|.+       +..++|+|+||+|++||.+||+|+||||||||+++|.|++.|++|+|.++|.++..-   
T Consensus      1237 ~I~f~nVsf~Y~~-------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i--- 1306 (1622)
T PLN03130       1237 SIKFEDVVLRYRP-------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF--- 1306 (1622)
T ss_pred             cEEEEEEEEEeCC-------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC---
Confidence            5999999999953       235799999999999999999999999999999999999999999999999875321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg  176 (348)
                              -...+|+.+++++|++.++.. +..+++......+.+++.++++..++.         .+    .....|||
T Consensus      1307 --------~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130       1307 --------GLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred             --------CHHHHHhccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence                    123567888999888776655 444443222234556666666665441         12    23457999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+++|+|||||||||+||+++...|.+.|++..  .++|||+|+|+++.+.. ||+|++|++|+|++.|
T Consensus      1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130       1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFD 1454 (1622)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999864  37999999999999976 9999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +++++.+.
T Consensus      1455 t~~eLl~~ 1462 (1622)
T PLN03130       1455 TPENLLSN 1462 (1622)
T ss_pred             CHHHHHhC
Confidence            99999864

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=7.7e-39  Score=330.70  Aligned_cols=220  Identities=23%  Similarity=0.361  Sum_probs=172.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++|++++|+...     +..++|+++||+|++||+++|+||||||||||+++|+|+++|++|++.++|+++.....
T Consensus         3 ~~l~~~nl~~~y~~~~-----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~   77 (648)
T PRK10535          3 ALLELKDIRRSYPSGE-----EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDA   77 (648)
T ss_pred             cEEEEeeEEEEeCCCC-----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCH
Confidence            4799999999995210     12469999999999999999999999999999999999999999999999986432110


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                      .    .+   ....++.++|.+++..++...+..+ +.+.  ..+..    .+++.++++.+++.  .++.+.+|||||+
T Consensus        78 ~----~~---~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~  150 (648)
T PRK10535         78 D----AL---AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQ  150 (648)
T ss_pred             H----HH---HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHH
Confidence            0    00   0001234566655544444444333 2211  11111    23456788888886  3678899999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      ||++|||||+.+|++|||||||+|||+.+++.+.++|+++++ .|.|+|++||+++.+. .||++++|++|++++.|+++
T Consensus       151 qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~  228 (648)
T PRK10535        151 QRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQ  228 (648)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCcc
Confidence            999999999999999999999999999999999999999864 5899999999999886 69999999999999999988


Q ss_pred             HHH
Q 018938          260 KVK  262 (348)
Q Consensus       260 ~~~  262 (348)
                      +..
T Consensus       229 ~~~  231 (648)
T PRK10535        229 EKV  231 (648)
T ss_pred             ccc
Confidence            764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=7.1e-39  Score=353.45  Aligned_cols=203  Identities=19%  Similarity=0.292  Sum_probs=158.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEc-Ceecccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVL-GRSAFHDTA  108 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~-G~~~~~~~~  108 (348)
                      .|+++||+|+|+..      .+.++|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.++ |.++...  
T Consensus       382 ~I~~~nVsf~Y~~~------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~--  453 (1466)
T PTZ00265        382 KIQFKNVRFHYDTR------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI--  453 (1466)
T ss_pred             cEEEEEEEEEcCCC------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC--
Confidence            59999999999631      12479999999999999999999999999999999999999999999995 5543110  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccC---------------------------------------
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA---------------------------------------  149 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  149 (348)
                               ....+++.+++++|+..++.....+++.++..                                       
T Consensus       454 ---------~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  524 (1466)
T PTZ00265        454 ---------NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLND  524 (1466)
T ss_pred             ---------CHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhh
Confidence                     01235667888877655554332333333321                                       


Q ss_pred             ------------------CCCHHHHHHHHHHcCCC-------------cCccCCCCCHHHHHHHHHHHHHccCCcEEEee
Q 018938          150 ------------------GIDPQRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD  198 (348)
Q Consensus       150 ------------------~~~~~~~~~~l~~l~l~-------------~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLD  198 (348)
                                        ..+.+++.++++.+++.             ......+||||||||++|||||+.+|+|||||
T Consensus       525 ~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLD  604 (1466)
T PTZ00265        525 MSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILD  604 (1466)
T ss_pred             cccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence                              01223445555555442             13456789999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          199 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       199 EPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      |||++||+.++..+.+.|.++.++.|+|+|+|||+++.+ ..||+|++|++|
T Consensus       605 EpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        605 EATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR  655 (1466)
T ss_pred             CcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence            999999999999999999998654589999999999998 579999999986

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=100.00  E-value=1.2e-38  Score=274.85  Aligned_cols=248  Identities=69%  Similarity=1.142  Sum_probs=220.1

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      +..|++.++.|+|+.        ..+++-|+|++++.|....++|.||||||||||+|+|-.....|.|.+.|.+.+.+.
T Consensus        11 ~~aievsgl~f~y~~--------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt   82 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKV--------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDT   82 (291)
T ss_pred             cceEEEeccEEeccc--------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccc
Confidence            457999999999973        568999999999999999999999999999999999988888899999999999988


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG  187 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAra  187 (348)
                      .....+.+.|++.+|.+..++.. ++|++.+++++.++++..+.+.++.+++++.++++..++.+.+|-|||+||.||+.
T Consensus        83 ~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMG  161 (291)
T KOG2355|consen   83 SLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMG  161 (291)
T ss_pred             cccccCceeEecccccccccccc-cccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHh
Confidence            88888899999999988877764 78888899999999988877788889999999999999999999999999999999


Q ss_pred             HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHhhhh
Q 018938          188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKL  267 (348)
Q Consensus       188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~  267 (348)
                      |++.-++|+|||-|-.||..++..+++++++-++++|.||++.||..+-++.+.++++.|..|+++...+.+.+.+-...
T Consensus       162 LL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~~~~  241 (291)
T KOG2355|consen  162 LLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEFSTS  241 (291)
T ss_pred             cccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999986665555443222


Q ss_pred             -hhHHHHHHHhhhhhHHH
Q 018938          268 -SLMRTVESWLRKERDEE  284 (348)
Q Consensus       268 -~~~~~~~~~~~~~~~~~  284 (348)
                       .++...+.|++++.+..
T Consensus       242 ~nl~s~veswlr~E~k~~  259 (291)
T KOG2355|consen  242 PNLLSTVESWLRKENKNN  259 (291)
T ss_pred             chHHHHHHHHHHhhhhhh
Confidence             34455667877554433

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=9.1e-39  Score=323.84  Aligned_cols=183  Identities=27%  Similarity=0.414  Sum_probs=153.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|++        ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..    
T Consensus       334 ~I~~~~vsf~Y~~--------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~----  401 (529)
T TIGR02868       334 TLELRDLSFGYPG--------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS----  401 (529)
T ss_pred             eEEEEEEEEecCC--------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh----
Confidence            5999999999963        3469999999999999999999999999999999999999999999999986532    


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg  176 (348)
                             + ...+++.+++++|+..++.....+++.++.+..+.++..++++..++.         .+    .....|||
T Consensus       402 -------~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG  473 (529)
T TIGR02868       402 -------L-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSG  473 (529)
T ss_pred             -------H-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCH
Confidence                   1 245678899998887776665556666655555667777777776652         12    22356999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  234 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~  234 (348)
                      |||||++|||||+.+|++||||||||+||+++...+.+.|.++.  .++|+|+|||++
T Consensus       474 GQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl  529 (529)
T TIGR02868       474 GERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence            99999999999999999999999999999999999999998763  478999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-38  Score=334.37  Aligned_cols=215  Identities=24%  Similarity=0.357  Sum_probs=182.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      -|+++||+|+||..      .+.++|+|+||+|++|+.+||||||||||||.+.+|-.++.|+.|.|.+||.++..-   
T Consensus       987 ~I~~~~V~F~YPsR------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l--- 1057 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTR------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL--- 1057 (1228)
T ss_pred             EEEEeeeEeeCCCC------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC---
Confidence            49999999999852      357899999999999999999999999999999999999999999999999875321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcC-------CC--c----CccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-------ID--L----SWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~--~----~~~~~~LSg  176 (348)
                              ....+|++++.+.|++.++...-.+++.++....+.+++.++++.-+       ++  .    ..+-.+|||
T Consensus      1058 --------nl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1058 --------NLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred             --------CHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence                    12346788999988877776666677778743456666655555433       22  2    234568999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||+|||||++++|+||||||.||+||.++.+.+.+.|.+..  .|+|.|+|.|.+..+.. ||.|+|+++|+|++.|
T Consensus      1130 GQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred             hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhc-CCEEEEEECCEEEecc
Confidence            99999999999999999999999999999999999999999874  48999999999999975 9999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +-+++.+.
T Consensus      1207 tH~~L~~~ 1214 (1228)
T KOG0055|consen 1207 THDELLAK 1214 (1228)
T ss_pred             cHHHHHhC
Confidence            99999873

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=4.5e-38  Score=349.35  Aligned_cols=213  Identities=16%  Similarity=0.191  Sum_probs=177.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|++       +..++|+||||+|++||.+||+|+||||||||+++|.|++.|++|+|.++|.++..-   
T Consensus      1308 ~I~f~nVsf~Y~~-------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i--- 1377 (1560)
T PTZ00243       1308 SLVFEGVQMRYRE-------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY--- 1377 (1560)
T ss_pred             eEEEEEEEEEeCC-------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC---
Confidence            5999999999963       335699999999999999999999999999999999999999999999999875321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cCc----cCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LSW----RMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~LSg  176 (348)
                              -...+++.+++++|+..++.. +..+++......+.+++.++++..++.         .+.    ....|||
T Consensus      1378 --------~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSg 1448 (1560)
T PTZ00243       1378 --------GLRELRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSV 1448 (1560)
T ss_pred             --------CHHHHHhcceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCH
Confidence                    123567889999888766654 454444332344566777777776652         122    2357999


Q ss_pred             HHHHHHHHHHHHccC-CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          177 GQRRRVQICMGLLKP-FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       177 GqrQRv~lAraL~~~-P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||++|||||+++ |+|||||||||+||+++.+.+.+.|++..  .++|||+|+|+++.+.. ||+|++|++|+|++.
T Consensus      1449 GQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243       1449 GQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEM 1525 (1560)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHh-CCEEEEEECCEEEEE
Confidence            999999999999995 89999999999999999999999998864  37899999999998865 999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+++++.+.
T Consensus      1526 Gt~~eLl~~ 1534 (1560)
T PTZ00243       1526 GSPRELVMN 1534 (1560)
T ss_pred             CCHHHHHhC
Confidence            999999764

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=2.3e-38  Score=271.31  Aligned_cols=156  Identities=35%  Similarity=0.495  Sum_probs=133.2

Q ss_pred             EeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccccc
Q 018938           33 INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS  112 (348)
Q Consensus        33 v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~  112 (348)
                      ++|+++.|+         +..+|+++||+|++|++++|+|+||||||||+++|+|+++|+.|+|+++|.......     
T Consensus         2 ~~~~~~~~~---------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-----   67 (157)
T cd00267           2 IENLSFRYG---------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-----   67 (157)
T ss_pred             eEEEEEEeC---------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC-----
Confidence            689999995         247999999999999999999999999999999999999999999999986431100     


Q ss_pred             CcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCC
Q 018938          113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPF  192 (348)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P  192 (348)
                            ...++..++|.++                                          ||+||+||++|||||+.+|
T Consensus        68 ------~~~~~~~i~~~~q------------------------------------------lS~G~~~r~~l~~~l~~~~   99 (157)
T cd00267          68 ------LEELRRRIGYVPQ------------------------------------------LSGGQRQRVALARALLLNP   99 (157)
T ss_pred             ------HHHHHhceEEEee------------------------------------------CCHHHHHHHHHHHHHhcCC
Confidence                  0011111222211                                          9999999999999999999


Q ss_pred             cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          193 KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       193 ~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      +++||||||++||+.++..+.+.|.++.+. +.|+|++||+++++..+||++++|++|+
T Consensus       100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         100 DLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            999999999999999999999999998654 7899999999999999999999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=3.3e-38  Score=350.84  Aligned_cols=213  Identities=15%  Similarity=0.190  Sum_probs=176.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|++       +..++|+||||+|++||.+||+|+||||||||+++|.|++.|++|+|.++|.++..-.  
T Consensus      1284 ~I~f~nVsf~Y~~-------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~-- 1354 (1522)
T TIGR00957      1284 RVEFRNYCLRYRE-------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG-- 1354 (1522)
T ss_pred             cEEEEEEEEEeCC-------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccC--
Confidence            5999999999963       2357999999999999999999999999999999999999999999999998753211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cC----ccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LS----WRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~LSg  176 (348)
                               ...+|+.+++++|++.++.. +..+++......+.+++.++++..++.         ++    .....|||
T Consensus      1355 ---------~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957      1355 ---------LHDLRFKITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred             ---------HHHHHhcCeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence                     23567888999888766655 444444322234566666677765542         12    23357999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+++|+|||||||||+||+++...+.+.|++..  .++|||+|+|+++.+.. ||+|++|++|+|++.|
T Consensus      1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957      1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999998764  47999999999999875 8999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +++++.+.
T Consensus      1502 ~~~eLl~~ 1509 (1522)
T TIGR00957      1502 APSNLLQQ 1509 (1522)
T ss_pred             CHHHHHhC
Confidence            99998764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=2.6e-38  Score=275.39  Aligned_cols=156  Identities=17%  Similarity=0.264  Sum_probs=128.0

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG  130 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      .+++|+|+||+|++|++++|+||||||||||||+|.+    ++|++.++|.....                .+..+.|.+
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~----------------~~~~~~~~~   66 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKF----------------SRNKLIFID   66 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccccc----------------ccccEEEEh
Confidence            4679999999999999999999999999999999863    68888877642100                001111211


Q ss_pred             CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccC--CcEEEeeccCCCCC
Q 018938          131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKP--FKVLLLDEITVDLD  205 (348)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~--P~lLlLDEPtsgLD  205 (348)
                      +                         .++++.+++.   .++++.+||||||||++|||||+.+  |++|||||||++||
T Consensus        67 q-------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD  121 (176)
T cd03238          67 Q-------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH  121 (176)
T ss_pred             H-------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence            0                         3466777764   4678899999999999999999999  99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          206 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       206 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      +.++..+.+.|+++++ .|.|||++||+++++ ..||++++|.+|+..
T Consensus       122 ~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~-~~~d~i~~l~~g~~~  167 (176)
T cd03238         122 QQDINQLLEVIKGLID-LGNTVILIEHNLDVL-SSADWIIDFGPGSGK  167 (176)
T ss_pred             HHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEECCCCCC
Confidence            9999999999999864 699999999999997 579999999776543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=6.8e-38  Score=300.96  Aligned_cols=218  Identities=21%  Similarity=0.316  Sum_probs=176.5

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      +...|.++++++.=++       .++++++++||++.+||.+|||||||||||||.|+|.|..+|.+|.|++||-++.+ 
T Consensus       331 P~g~L~Ve~l~~~PPg-------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q-  402 (580)
T COG4618         331 PQGALSVERLTAAPPG-------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ-  402 (580)
T ss_pred             CCceeeEeeeeecCCC-------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc-
Confidence            3457999999986543       46799999999999999999999999999999999999999999999999976532 


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcC-------C--CcCcc----CCC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-------I--DLSWR----MHK  173 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l--~~~~~----~~~  173 (348)
                                |....+.+.++|.+|++.++.....+++...-...+.+++-+....-+       +  ..+..    -..
T Consensus       403 ----------Wd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~  472 (580)
T COG4618         403 ----------WDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGAT  472 (580)
T ss_pred             ----------CCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCC
Confidence                      222345678999999988887765655542222344444433322222       1  12333    357


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      ||||||||++|||||..+|.+++||||-|+||.+....+.+.|.+.. .+|.|+|+|||....+. .+|+|++|++|++.
T Consensus       473 LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~  550 (580)
T COG4618         473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRPSALA-SVDKILVLQDGRIA  550 (580)
T ss_pred             CCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecCHHHHh-hcceeeeecCChHH
Confidence            99999999999999999999999999999999999999999999975 56999999999999775 69999999999999


Q ss_pred             eecChhHHHHh
Q 018938          254 LAMPMDKVKEA  264 (348)
Q Consensus       254 ~~g~~~~~~~~  264 (348)
                      ..|+.+++..+
T Consensus       551 ~FG~r~eVLa~  561 (580)
T COG4618         551 AFGPREEVLAK  561 (580)
T ss_pred             hcCCHHHHHHH
Confidence            99999988753

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3e-38  Score=274.44  Aligned_cols=216  Identities=24%  Similarity=0.329  Sum_probs=166.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      |+.+.|+++.|...    .+..+++|+++|++|++|+++.|+|.||||||||+++|+|.+.|++|+|.++|.++...+..
T Consensus         1 Mi~~~~~~~~f~~g----~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~   76 (263)
T COG1101           1 MISLSNATKTFFKG----TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVA   76 (263)
T ss_pred             CcccccceeeecCC----ChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHH
Confidence            46788898888531    12357899999999999999999999999999999999999999999999999876543221


Q ss_pred             cccCcccccchhhhhhhhhcCCCc--cccccchHHHHH-hc-c----CCCC----HH---HHHHHHHHcCCC----cCcc
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEV--PIQMDVSAEKMI-FG-V----AGID----PQ---RRAELIKVLDID----LSWR  170 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~-~----~~~~----~~---~~~~~l~~l~l~----~~~~  170 (348)
                      ..           ...++-++|++  .....++.++++ .. .    .++.    ..   ...+.+..+++.    ++.+
T Consensus        77 ~R-----------A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~  145 (263)
T COG1101          77 KR-----------ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDR  145 (263)
T ss_pred             HH-----------hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcCh
Confidence            11           11122222221  123456665543 11 1    1111    11   223445555553    3567


Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +.-|||||||-++|++|.++.|+||+|||-|++|||.....++++-.++.++.+.|.+||||+++.+..|.+|.++|++|
T Consensus       146 iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G  225 (263)
T COG1101         146 IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSG  225 (263)
T ss_pred             hhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeecChhH
Q 018938          251 KLQLAMPMDK  260 (348)
Q Consensus       251 ~i~~~g~~~~  260 (348)
                      +|+.+...++
T Consensus       226 ~IvlDv~g~~  235 (263)
T COG1101         226 KIVLDVTGEE  235 (263)
T ss_pred             eEEEEccccc
Confidence            9998765443

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.7e-37  Score=321.87  Aligned_cols=221  Identities=22%  Similarity=0.233  Sum_probs=158.3

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC---cCCCceEEEcCeecc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH---MVEPEMVKVLGRSAF  104 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~---~~~~G~i~i~G~~~~  104 (348)
                      ..+|+++|++++|+         ++.+|+|+||+|++|+++|||||||||||||||+|+|..   .|+.|+|.+.++...
T Consensus       175 ~~~I~i~nls~~y~---------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~  245 (718)
T PLN03073        175 IKDIHMENFSISVG---------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV  245 (718)
T ss_pred             ceeEEEceEEEEeC---------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC
Confidence            35799999999995         356999999999999999999999999999999999854   578889876554321


Q ss_pred             ccccccc-----cCcccccchhhhhhhhhcCCCcc-------------ccccchH-------HHHH--hcc-CCC-CHHH
Q 018938          105 HDTALTS-----SGDLSYLGGEWRREVAFAGFEVP-------------IQMDVSA-------EKMI--FGV-AGI-DPQR  155 (348)
Q Consensus       105 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-------~~~~--~~~-~~~-~~~~  155 (348)
                      . .....     ...... ....+..+++..+...             .......       .+..  +.. ..+ ...+
T Consensus       246 g-~~~t~~~~v~~~~~~~-~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r  323 (718)
T PLN03073        246 G-DDTTALQCVLNTDIER-TQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEAR  323 (718)
T ss_pred             C-CCCCHHHHHHHhhHHH-HHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHH
Confidence            1 11000     000000 0001111222211000             0000000       0111  111 111 2345


Q ss_pred             HHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 018938          156 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  232 (348)
Q Consensus       156 ~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtH  232 (348)
                      +.+++..+++.   .++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|+++    +.|||+|||
T Consensus       324 ~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsH  399 (718)
T PLN03073        324 AASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSH  399 (718)
T ss_pred             HHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEEC
Confidence            67788888885   36778999999999999999999999999999999999999999999999764    679999999


Q ss_pred             ChhhhhhhCCEEEEEcCCEEe-eecChhHHHH
Q 018938          233 IFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE  263 (348)
Q Consensus       233 d~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  263 (348)
                      |++++..+||++++|++|++. +.|+.+.+..
T Consensus       400 d~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~  431 (718)
T PLN03073        400 AREFLNTVVTDILHLHGQKLVTYKGDYDTFER  431 (718)
T ss_pred             CHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence            999999999999999999996 6788776654

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.5e-37  Score=276.16  Aligned_cols=212  Identities=21%  Similarity=0.347  Sum_probs=167.8

Q ss_pred             CeEEEeceEEEecCCC---------------CCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC
Q 018938           29 PTVEINALKFTYPGID---------------GHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP   93 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~---------------~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~   93 (348)
                      ++|+++||++.|.-..               +........+|+||||++++||.+||||+||||||||+|+|+|.++|++
T Consensus         2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~   81 (249)
T COG1134           2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS   81 (249)
T ss_pred             cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence            4688888888884321               0001234679999999999999999999999999999999999999999


Q ss_pred             ceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCCCH----HHHHHHHHHcCCC
Q 018938           94 EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGIDP----QRRAELIKVLDID  166 (348)
Q Consensus        94 G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~l~~l~l~  166 (348)
                      |+|.+.|+..+-                +.-..+|       .+.++..+++.   ...+...    ++.+++.+.-+|.
T Consensus        82 G~v~v~G~v~~l----------------i~lg~Gf-------~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG  138 (249)
T COG1134          82 GKVKVTGKVAPL----------------IELGAGF-------DPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELG  138 (249)
T ss_pred             ceEEEcceEehh----------------hhcccCC-------CcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            999999975311                0001122       22334433221   1123332    3455666665554


Q ss_pred             --cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       167 --~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                        .+.++.++|-||+-|+++|.|...+|++||+||-.+-.|+.-+++-.+.+.++.++ +.|||+||||++.+.++||++
T Consensus       139 ~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~  217 (249)
T COG1134         139 DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLGAIKQYCDRA  217 (249)
T ss_pred             HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhcCee
Confidence              57899999999999999999999999999999999999999999999999998654 799999999999999999999


Q ss_pred             EEEcCCEEeeecChhHHHHh
Q 018938          245 VYVAHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       245 ~~l~~G~i~~~g~~~~~~~~  264 (348)
                      ++|++|++...|.++++...
T Consensus       218 i~l~~G~i~~~G~~~~vi~~  237 (249)
T COG1134         218 IWLEHGQIRMEGSPEEVIPA  237 (249)
T ss_pred             EEEeCCEEEEcCCHHHHHHH
Confidence            99999999999999998753

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=5.7e-37  Score=340.12  Aligned_cols=211  Identities=18%  Similarity=0.268  Sum_probs=175.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|++       +..++|+|+||+|++||.+||+|+||||||||+++|+|++. .+|+|.++|.++..-   
T Consensus      1217 ~I~f~nVs~~Y~~-------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i--- 1285 (1490)
T TIGR01271      1217 QMDVQGLTAKYTE-------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSV--- 1285 (1490)
T ss_pred             eEEEEEEEEEeCC-------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccC---
Confidence            5999999999963       34679999999999999999999999999999999999986 899999999875321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------cCc----cCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------LSW----RMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~LSg  176 (348)
                              -...+++.+++++|++.++.. +..+++......+.+++.++++..++.         ++.    ....|||
T Consensus      1286 --------~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSg 1356 (1490)
T TIGR01271      1286 --------TLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN 1356 (1490)
T ss_pred             --------CHHHHHhceEEEeCCCccCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCH
Confidence                    113467788898887766655 444444322234566777777777652         122    2247999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++|||||+++|+|||||||||+||+.+...+.+.|++..  .++|||+|||+++.+.. ||+|++|++|+|++.|
T Consensus      1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g 1433 (1490)
T TIGR01271      1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYD 1433 (1490)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999864  47999999999998875 9999999999999999


Q ss_pred             ChhHHHH
Q 018938          257 PMDKVKE  263 (348)
Q Consensus       257 ~~~~~~~  263 (348)
                      +++++.+
T Consensus      1434 ~p~~Ll~ 1440 (1490)
T TIGR01271      1434 SIQKLLN 1440 (1490)
T ss_pred             CHHHHHc
Confidence            9999885

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=1.3e-37  Score=317.33  Aligned_cols=194  Identities=20%  Similarity=0.256  Sum_probs=146.8

Q ss_pred             ceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE-----------EcCeec
Q 018938           35 ALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK-----------VLGRSA  103 (348)
Q Consensus        35 ~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~-----------i~G~~~  103 (348)
                      +++++|++        ...+|++++ .+++|+++||+||||||||||+|+|+|+++|+.|+|.           ++|.++
T Consensus        78 ~~~~~yg~--------~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l  148 (590)
T PRK13409         78 EPVHRYGV--------NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTEL  148 (590)
T ss_pred             CceEEecC--------CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHH
Confidence            48899952        246999999 9999999999999999999999999999999999987           666543


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCccccc---cchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM---DVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                      ..........         ...+++..+.....+   ..++.+++...  ....++.++++.+++.  .++.+.+|||||
T Consensus       149 ~~~~~~~~~~---------~~~~~~~~q~~~~~p~~~~~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe  217 (590)
T PRK13409        149 QNYFKKLYNG---------EIKVVHKPQYVDLIPKVFKGKVRELLKKV--DERGKLDEVVERLGLENILDRDISELSGGE  217 (590)
T ss_pred             HHHHHHHhcc---------CcceeecccchhhhhhhhcchHHHHHHhh--hHHHHHHHHHHHcCCchhhcCChhhCCHHH
Confidence            2100000000         001111111111111   11333333211  1234567888999986  478899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      ||||+||+||+.+|++|||||||++||+..+..+.++|+++. + |.|||+||||++++..+||++++|+++
T Consensus       218 ~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        218 LQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            999999999999999999999999999999999999999986 4 899999999999999999999999863

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=5.8e-37  Score=315.28  Aligned_cols=199  Identities=22%  Similarity=0.296  Sum_probs=163.4

Q ss_pred             CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeeccccccccccCcccccchhhhhhh
Q 018938           50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREV  126 (348)
Q Consensus        50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      +++++|+|+|+++++||+++|+|||||||||||++|+|...+.   +|+|.++|.+...              ..+++.+
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--------------~~~~~~i  101 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--------------KEMRAIS  101 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--------------HHHhhhc
Confidence            4578999999999999999999999999999999999988764   7899999975321              1244567


Q ss_pred             hhcCCCccccccchHHHHH-hc----cC-CCC----HHHHHHHHHHcCCCc--CccCC------CCCHHHHHHHHHHHHH
Q 018938          127 AFAGFEVPIQMDVSAEKMI-FG----VA-GID----PQRRAELIKVLDIDL--SWRMH------KVSDGQRRRVQICMGL  188 (348)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~-~~----~~-~~~----~~~~~~~l~~l~l~~--~~~~~------~LSgGqrQRv~lAraL  188 (348)
                      +|++++......+++.+.+ +.    .. ...    .++++++++.+++..  +..++      .|||||||||+||++|
T Consensus       102 ~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL  181 (617)
T TIGR00955       102 AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL  181 (617)
T ss_pred             eeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence            7877776666666666543 21    11 112    134677888888852  44444      5999999999999999


Q ss_pred             ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      +.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|++. ++..+||++++|++|++++.|+++++.+
T Consensus       182 ~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~  256 (617)
T TIGR00955       182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP  256 (617)
T ss_pred             HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence            999999999999999999999999999999975 4999999999995 7888999999999999999999988754

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=7.6e-37  Score=336.84  Aligned_cols=210  Identities=20%  Similarity=0.278  Sum_probs=168.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc---CCCceEEEcCeeccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFH  105 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~---~~~G~i~i~G~~~~~  105 (348)
                      .+|+++||++.|+..     .+.+.+|+|||+++++||+++|+|||||||||||++|+|+.+   |++|+|.++|.+...
T Consensus       758 ~~l~~~nl~~~~~~~-----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~  832 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIK-----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS  832 (1394)
T ss_pred             ceEEEEeeEEEecCC-----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence            358999999999521     134679999999999999999999999999999999999986   678999999986421


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--c--C-CCCH----HHHHHHHHHcCCC--cCccCC-
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--V--A-GIDP----QRRAELIKVLDID--LSWRMH-  172 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~--~-~~~~----~~~~~~l~~l~l~--~~~~~~-  172 (348)
                                     .+++.++|+.|+.......++.+.+ +.  +  + ..+.    ++++++++.+++.  .+..++ 
T Consensus       833 ---------------~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~  897 (1394)
T TIGR00956       833 ---------------SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV  897 (1394)
T ss_pred             ---------------hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCC
Confidence                           1334566766655444555665543 21  1  1 1222    3456788888885  355555 


Q ss_pred             ---CCCHHHHHHHHHHHHHccCCc-EEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh-hhhhCCEEEEE
Q 018938          173 ---KVSDGQRRRVQICMGLLKPFK-VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG-LENWPSHIVYV  247 (348)
Q Consensus       173 ---~LSgGqrQRv~lAraL~~~P~-lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~-~~~~~d~v~~l  247 (348)
                         .|||||||||+||++|+.+|+ ||||||||+|||+.++..+++.|+++++ .|+|||++||+++. +...||++++|
T Consensus       898 ~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L  976 (1394)
T TIGR00956       898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLL  976 (1394)
T ss_pred             CCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEE
Confidence               799999999999999999997 9999999999999999999999999975 59999999999996 45679999999


Q ss_pred             cCC-EEeeecChh
Q 018938          248 AHG-KLQLAMPMD  259 (348)
Q Consensus       248 ~~G-~i~~~g~~~  259 (348)
                      ++| ++++.|++.
T Consensus       977 ~~GG~iv~~G~~~  989 (1394)
T TIGR00956       977 QKGGQTVYFGDLG  989 (1394)
T ss_pred             cCCCEEEEECCcc
Confidence            997 999999863

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=9.4e-37  Score=315.54  Aligned_cols=184  Identities=16%  Similarity=0.334  Sum_probs=144.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+++|++        ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.       
T Consensus       450 ~~i~~~nv~~~~~~--------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~-------  514 (659)
T TIGR00954       450 NGIKFENIPLVTPN--------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK-------  514 (659)
T ss_pred             CeEEEEeeEEECCC--------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC-------
Confidence            46999999999952        357999999999999999999999999999999999999999998876431       


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc-------CCCCHHHHHHHHHHcCCCc--Cc---------
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV-------AGIDPQRRAELIKVLDIDL--SW---------  169 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~l~~l~l~~--~~---------  169 (348)
                                     ..+++++|+..+... +.. ++.++.       .....+++.++++.+++..  ++         
T Consensus       515 ---------------~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~  578 (659)
T TIGR00954       515 ---------------GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQD  578 (659)
T ss_pred             ---------------CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccc
Confidence                           123344343333323 333 333221       1123455667788777641  22         


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      ...+||||||||++|||||+++|++|||||||++||+.++..+.+.+++    .|.|+|+|||+++.+ .+||++++|+
T Consensus       579 ~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~-~~~d~il~l~  652 (659)
T TIGR00954       579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLW-KYHEYLLYMD  652 (659)
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHH-HhCCEEEEEe
Confidence            2378999999999999999999999999999999999999999988864    389999999999987 5799999996

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.1e-36  Score=262.45  Aligned_cols=214  Identities=21%  Similarity=0.234  Sum_probs=165.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCeecccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~~~~~~  106 (348)
                      .+|+++||+.+-.        +++.+|++|||+|++||+++|+||||||||||.++|+|.  +.+++|+|.++|+++..-
T Consensus         2 ~~L~I~dLhv~v~--------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l   73 (251)
T COG0396           2 MMLEIKDLHVEVE--------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILEL   73 (251)
T ss_pred             ceeEEeeeEEEec--------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccC
Confidence            3799999999984        225899999999999999999999999999999999996  367899999999876432


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc----cCC---C---CHHHHHHHHHHcCCC---cCccCC-
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG----VAG---I---DPQRRAELIKVLDID---LSWRMH-  172 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~---~~~~~~~~l~~l~l~---~~~~~~-  172 (348)
                      ....          ..+..+.+.+|.++..+..+..+++..    ..+   .   ..+...+.++.++++   +++.+. 
T Consensus        74 ~~~E----------RAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~  143 (251)
T COG0396          74 SPDE----------RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE  143 (251)
T ss_pred             CHhH----------HHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC
Confidence            2110          011122222233333344444433210    011   0   124456778888886   356664 


Q ss_pred             CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEEEEcCCE
Q 018938          173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGK  251 (348)
Q Consensus       173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~~l~~G~  251 (348)
                      .+|||||+|..|+.+++.+|++.|||||-||||..+-+.+.+.+.++. +.|.++++|||.-..+..+ .|++.+|.+|+
T Consensus       144 GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr-~~~~~~liITHy~rll~~i~pD~vhvl~~Gr  222 (251)
T COG0396         144 GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR-EEGRGVLIITHYQRLLDYIKPDKVHVLYDGR  222 (251)
T ss_pred             CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHhhcCCCEEEEEECCE
Confidence            699999999999999999999999999999999999999999999986 4599999999998888765 39999999999


Q ss_pred             EeeecChhHHH
Q 018938          252 LQLAMPMDKVK  262 (348)
Q Consensus       252 i~~~g~~~~~~  262 (348)
                      |+..|.+ ++.
T Consensus       223 Iv~sG~~-el~  232 (251)
T COG0396         223 IVKSGDP-ELA  232 (251)
T ss_pred             EEecCCH-HHH
Confidence            9999998 443

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.7e-37  Score=293.07  Aligned_cols=213  Identities=21%  Similarity=0.328  Sum_probs=176.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      -|+++||+|.|.+        ++++|+||||++.+|+.++|+||||+||||++|++..+....+|.|+++|+++..-   
T Consensus       537 ~i~fsnvtF~Y~p--------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv---  605 (790)
T KOG0056|consen  537 KIEFSNVTFAYDP--------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV---  605 (790)
T ss_pred             eEEEEEeEEecCC--------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHH---
Confidence            5999999999964        58999999999999999999999999999999999999999999999999875321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHc-------CCCc------CccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVL-------DIDL------SWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------~l~~------~~~~~~LSg  176 (348)
                              ....+|+.++.++|+..++.+....++.++.+..+.+++.++.+.-       ++..      ..+.-.|||
T Consensus       606 --------t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSG  677 (790)
T KOG0056|consen  606 --------TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSG  677 (790)
T ss_pred             --------HHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCC
Confidence                    1234678888888877766655555665655554444443333322       2221      223457999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||+++..|.+++|||.||+||..+.+.+...|.++|.  ++|-|+|.|.+..+-. ||.|+++++|+|++.|
T Consensus       678 GEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG  754 (790)
T KOG0056|consen  678 GEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVN-ADLILVISNGRIVERG  754 (790)
T ss_pred             cchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheec-ccEEEEEeCCeEeecC
Confidence            999999999999999999999999999999999999999999985  6799999999999875 9999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      ..+++...
T Consensus       755 ~HeeLl~r  762 (790)
T KOG0056|consen  755 RHEELLKR  762 (790)
T ss_pred             cHHHHHhc
Confidence            99998764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=3.2e-36  Score=300.73  Aligned_cols=203  Identities=25%  Similarity=0.304  Sum_probs=158.9

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      ..++++++|+++.|++        .+.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-.     
T Consensus       318 g~~vl~~~~~~~~y~~--------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----  384 (530)
T COG0488         318 GKLVLEFENVSKGYDG--------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----  384 (530)
T ss_pred             CCeeEEEeccccccCC--------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----
Confidence            3568999999999953        368999999999999999999999999999999999998999998877432     


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc-cCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHH
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG-VAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv  182 (348)
                            -.++|+.+...          .+....+..+.+.. .+......+...+..|++.   ..+++..||||||.|+
T Consensus       385 ------v~igyf~Q~~~----------~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl  448 (530)
T COG0488         385 ------VKIGYFDQHRD----------ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARL  448 (530)
T ss_pred             ------eEEEEEEehhh----------hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHH
Confidence                  12333332210          00111223333221 2222245677888899886   3568899999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee-cChhHH
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA-MPMDKV  261 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~  261 (348)
                      .||+.++.+|.+||||||||+||..++..+.+.|.++    ..|||+||||.+|+..+|++++.+.+ ++... |+.+++
T Consensus       449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y  523 (530)
T COG0488         449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY  523 (530)
T ss_pred             HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence            9999999999999999999999999999999998754    56999999999999999999999998 55544 776665


Q ss_pred             HH
Q 018938          262 KE  263 (348)
Q Consensus       262 ~~  263 (348)
                      .+
T Consensus       524 ~~  525 (530)
T COG0488         524 LE  525 (530)
T ss_pred             HH
Confidence            43

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1.3e-35  Score=330.09  Aligned_cols=200  Identities=19%  Similarity=0.296  Sum_probs=156.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|++++|++       ...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..       
T Consensus       636 ~i~~~~~~~~~~~-------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i-------  701 (1522)
T TIGR00957       636 SITVHNATFTWAR-------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV-------  701 (1522)
T ss_pred             cEEEEEeEEEcCC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEE-------
Confidence            6999999999963       23579999999999999999999999999999999999999999999988742       


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHH-HHHhccCCCCHHHHHHHHHHcCC---------C----cCccCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGVAGIDPQRRAELIKVLDI---------D----LSWRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LS  175 (348)
                                       +|++|+..+. ..+.. ++.++.. .+.++..++++..++         .    ...+..+||
T Consensus       702 -----------------~yv~Q~~~l~-~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LS  762 (1522)
T TIGR00957       702 -----------------AYVPQQAWIQ-NDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS  762 (1522)
T ss_pred             -----------------EEEcCCcccc-CCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCC
Confidence                             2222322222 22333 3333321 233333333332221         1    234578899


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHH-HhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC-EERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~-~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||||||++|||||+.+|+++||||||++||+...+.+++.+.+.. ...++|+|+|||+++.+.. ||+|++|++|++++
T Consensus       763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~  841 (1522)
T TIGR00957       763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISE  841 (1522)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEe
Confidence            999999999999999999999999999999999999999986531 1247899999999999876 99999999999999


Q ss_pred             ecChhHHHH
Q 018938          255 AMPMDKVKE  263 (348)
Q Consensus       255 ~g~~~~~~~  263 (348)
                      .|+.+++.+
T Consensus       842 ~g~~~~l~~  850 (1522)
T TIGR00957       842 MGSYQELLQ  850 (1522)
T ss_pred             eCCHHHHHh
Confidence            999998865

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.7e-35  Score=324.15  Aligned_cols=215  Identities=17%  Similarity=0.293  Sum_probs=166.7

Q ss_pred             eEEEeceEEEecCCCC-C---CCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC--CCceEEEcCeec
Q 018938           30 TVEINALKFTYPGIDG-H---PPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV--EPEMVKVLGRSA  103 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~-~---~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~--~~G~i~i~G~~~  103 (348)
                      .+..+||++..+.... +   ...+++.+|+|||+++++|++++|+|||||||||||++|+|...+  .+|+|.++|.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            5899999998843110 0   001245799999999999999999999999999999999998653  578999988642


Q ss_pred             cccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc----cC-CCCH----HHHHHHHHHcCCC--cCccC
Q 018938          104 FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG----VA-GIDP----QRRAELIKVLDID--LSWRM  171 (348)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~-~~~~----~~~~~~l~~l~l~--~~~~~  171 (348)
                      ..              ..+++.++|+.|+......+++.+.+ +.    .. ..+.    +.++++++.+++.  .+..+
T Consensus       947 ~~--------------~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~v 1012 (1470)
T PLN03140        947 KQ--------------ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIV 1012 (1470)
T ss_pred             Ch--------------HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCcc
Confidence            10              11234466776665555556665543 21    11 1222    2356788889885  24443


Q ss_pred             -----CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEE
Q 018938          172 -----HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIV  245 (348)
Q Consensus       172 -----~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~  245 (348)
                           ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++ .+..+||+++
T Consensus      1013 g~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vl 1091 (1470)
T PLN03140       1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELL 1091 (1470)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEE
Confidence                 58999999999999999999999999999999999999999999999975 4999999999998 4778999999


Q ss_pred             EEcC-CEEeeecChh
Q 018938          246 YVAH-GKLQLAMPMD  259 (348)
Q Consensus       246 ~l~~-G~i~~~g~~~  259 (348)
                      +|++ |++++.|++.
T Consensus      1092 lL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140       1092 LMKRGGQVIYSGPLG 1106 (1470)
T ss_pred             EEcCCCEEEEECCcc
Confidence            9996 8999999863

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=2.8e-35  Score=267.01  Aligned_cols=195  Identities=15%  Similarity=0.217  Sum_probs=127.0

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHH-HHHhCCCcCCCceEEEc-CeeccccccccccCcccccchh--hh-hh
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTIL-KIIGGKHMVEPEMVKVL-GRSAFHDTALTSSGDLSYLGGE--WR-RE  125 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl-k~i~Gl~~~~~G~i~i~-G~~~~~~~~~~~~~~~~~~~~~--~~-~~  125 (348)
                      +..+|+++||+|++||+++|+||||||||||+ .+|..     .|.+.+. +.........   +.+ +..+.  .+ ..
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~   77 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFL---GQM-DKPDVDSIEGLS   77 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhh---ccc-CccccccccCCC
Confidence            46799999999999999999999999999995 44431     2221110 0000000000   000 00000  00 00


Q ss_pred             hhhcCCCcc--ccccch---HHH---HHhcc-CCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC-
Q 018938          126 VAFAGFEVP--IQMDVS---AEK---MIFGV-AGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF-  192 (348)
Q Consensus       126 ~~~~~~~~~--~~~~~~---~~~---~~~~~-~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P-  192 (348)
                      ..+..++..  .....+   ..+   ..... .........++++.+++.   .++++.+|||||||||+|||||+.+| 
T Consensus        78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~  157 (226)
T cd03270          78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLT  157 (226)
T ss_pred             ceEEecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence            000000000  000001   001   11001 111122235678888874   36789999999999999999999998 


Q ss_pred             -cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE------cCCEEeeec
Q 018938          193 -KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV------AHGKLQLAM  256 (348)
Q Consensus       193 -~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l------~~G~i~~~g  256 (348)
                       ++|||||||++||+..+..+.++|+++++ .|.|||++|||++++ .+||++++|      ++|+|+++|
T Consensus       158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence             59999999999999999999999999864 599999999999997 489999999      999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=5.1e-35  Score=324.94  Aligned_cols=202  Identities=21%  Similarity=0.319  Sum_probs=159.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|++|+|+..      .++++|+|+||+|++|+.++|+||+|||||||+++|+|.++|.+|.+..           
T Consensus       614 ~I~~~~vsF~y~~~------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-----------  676 (1495)
T PLN03232        614 AISIKNGYFSWDSK------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-----------  676 (1495)
T ss_pred             cEEEEeeEEEcCCC------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-----------
Confidence            59999999999631      1357999999999999999999999999999999999999998875421           


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSg  176 (348)
                                  ++..++|++|++.++.....+++.++. ..+.++..++++..++.         .    ..+...|||
T Consensus       677 ------------~~~~Iayv~Q~p~Lf~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSG  743 (1495)
T PLN03232        677 ------------IRGSVAYVPQVSWIFNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISG  743 (1495)
T ss_pred             ------------ecCcEEEEcCccccccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCH
Confidence                        123455666665555444445555554 34566666676665542         1    123457999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF-LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~-l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||++||||+..+|+++|||||||+||+.+.+.+++. +....  .++|+|+|||+++.+. .||+|++|++|++++.
T Consensus       744 GQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~  820 (1495)
T PLN03232        744 GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEE  820 (1495)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHH-hCCEEEEEeCCEEEEe
Confidence            999999999999999999999999999999999988765 54432  4789999999999875 5999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+.+++.+.
T Consensus       821 Gt~~eL~~~  829 (1495)
T PLN03232        821 GTFAELSKS  829 (1495)
T ss_pred             cCHHHHHhc
Confidence            999988753

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=5.8e-35  Score=325.15  Aligned_cols=202  Identities=22%  Similarity=0.360  Sum_probs=160.0

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC-ceEEEcCeeccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP-EMVKVLGRSAFHDT  107 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~-G~i~i~G~~~~~~~  107 (348)
                      ..|+++|++|+|+..      .++++|+|+||+|++|+.++|+||+|||||||+++|+|.++|.+ |+|.+.|.      
T Consensus       613 ~~I~~~nvsf~y~~~------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~------  680 (1622)
T PLN03130        613 PAISIKNGYFSWDSK------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT------  680 (1622)
T ss_pred             CceEEEeeEEEccCC------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCe------
Confidence            359999999999631      13579999999999999999999999999999999999999999 88875432      


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKV  174 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~L  174 (348)
                                        ++|++|++.++.....+++.++.+ .+.++..++++..++.         .    ..+...|
T Consensus       681 ------------------Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~L  741 (1622)
T PLN03130        681 ------------------VAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI  741 (1622)
T ss_pred             ------------------EEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCC
Confidence                              344445544444333445555433 3566666666665542         1    1234579


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      ||||||||+||||+..+|+++|||||||+||+...+.+++ .+..+.  .++|+|+|||+++.+. .||+|++|++|+++
T Consensus       742 SGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~  818 (1622)
T PLN03130        742 SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLS-QVDRIILVHEGMIK  818 (1622)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHH-hCCEEEEEeCCEEE
Confidence            9999999999999999999999999999999999888764 555543  4799999999998875 59999999999999


Q ss_pred             eecChhHHHHh
Q 018938          254 LAMPMDKVKEA  264 (348)
Q Consensus       254 ~~g~~~~~~~~  264 (348)
                      +.|+.+++.+.
T Consensus       819 e~Gt~~eL~~~  829 (1622)
T PLN03130        819 EEGTYEELSNN  829 (1622)
T ss_pred             EeCCHHHHHhc
Confidence            99999998653

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.7e-35  Score=326.14  Aligned_cols=200  Identities=18%  Similarity=0.234  Sum_probs=159.6

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC----cCCCceEEEcCeeccccccccccCcccccchhhhhhh
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH----MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREV  126 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~----~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      .+.+|+|+|+++++||+++|+||||||||||||+|+|+.    .|.+|+|.++|.+.....            ..+++.+
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~------------~~~r~~i  140 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK------------KHYRGDV  140 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH------------hhcCcee
Confidence            356999999999999999999999999999999999985    468999999997542110            0123345


Q ss_pred             hhcCCCccccccchHHHHH-hc--c--C-----CCCHH----H-HHHHHHHcCCCc--Cc-----cCCCCCHHHHHHHHH
Q 018938          127 AFAGFEVPIQMDVSAEKMI-FG--V--A-----GIDPQ----R-RAELIKVLDIDL--SW-----RMHKVSDGQRRRVQI  184 (348)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~-~~--~--~-----~~~~~----~-~~~~l~~l~l~~--~~-----~~~~LSgGqrQRv~l  184 (348)
                      +|+.++......+++.+.+ +.  .  +     ....+    + .+.+++.+++..  +.     .+..|||||||||+|
T Consensus       141 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsI  220 (1394)
T TIGR00956       141 VYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSI  220 (1394)
T ss_pred             EEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHH
Confidence            6666655555556665533 21  1  1     11221    2 245788888852  32     457899999999999


Q ss_pred             HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh-hhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938          185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGKLQLAMPMDKVK  262 (348)
Q Consensus       185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~  262 (348)
                      |++|+.+|++|+|||||+|||+.++..+++.|++++++.|.|||+++|+. +.+..++|++++|++|++++.|+++++.
T Consensus       221 A~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~  299 (1394)
T TIGR00956       221 AEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK  299 (1394)
T ss_pred             HHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence            99999999999999999999999999999999999876699999999996 7888999999999999999999998774

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-35  Score=250.24  Aligned_cols=187  Identities=25%  Similarity=0.354  Sum_probs=153.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +++.+||+...         ++..+|.++||++.+||++-|.||||||||||||+|+|+..|++|+|.+.|..+...   
T Consensus         2 ~L~a~~L~~~R---------~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~---   69 (209)
T COG4133           2 MLEAENLSCER---------GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV---   69 (209)
T ss_pred             cchhhhhhhcc---------CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc---
Confidence            47788998877         467899999999999999999999999999999999999999999999988653221   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~  183 (348)
                               ...+.+...|.+.+..+...+++.+++ |.  +.+ .+...+.++++.+|+.  .+.++.+||-|||+||+
T Consensus        70 ---------~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvA  140 (209)
T COG4133          70 ---------RESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVA  140 (209)
T ss_pred             ---------hhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHH
Confidence                     112345566776666666666665543 22  122 2456778899999986  47789999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                      |||.+++.+++.||||||++||..+...+-.++..-+. .|..||++||+.-.+.
T Consensus       141 lArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~~  194 (209)
T COG4133         141 LARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPIA  194 (209)
T ss_pred             HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCCC
Confidence            99999999999999999999999999999999998765 5889999999976553

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=3.7e-35  Score=311.60  Aligned_cols=217  Identities=20%  Similarity=0.329  Sum_probs=184.4

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..+.++|+++.|+.        .+.|++++||.|++|||.|++|+|||||||++|+|+|..+|++|++.+.|.++.....
T Consensus       563 ~~~~~~~L~k~y~~--------~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~  634 (885)
T KOG0059|consen  563 SALVLNNLSKVYGG--------KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD  634 (885)
T ss_pred             ceEEEcceeeeecc--------hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc
Confidence            56899999999963        1229999999999999999999999999999999999999999999998876533211


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh---ccCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GVAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                                ....++.++|.+|...+...++.++.+.   ...+...    +.++.+++.+++.  .+++++.+|||+|
T Consensus       635 ----------~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~k  704 (885)
T KOG0059|consen  635 ----------FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNK  704 (885)
T ss_pred             ----------hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcch
Confidence                      1124567889988888888888776542   2233332    3456788888885  4677999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      +|+.+|.||+.+|++++|||||+|+||.+|+.+|+++.++.+ .|+.||++||.+++++.+|||+.+|.+|++...|+++
T Consensus       705 RkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q  783 (885)
T KOG0059|consen  705 RRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQ  783 (885)
T ss_pred             hhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChH
Confidence            999999999999999999999999999999999999999875 4669999999999999999999999999999999999


Q ss_pred             HHHHh
Q 018938          260 KVKEA  264 (348)
Q Consensus       260 ~~~~~  264 (348)
                      ++...
T Consensus       784 ~LKsr  788 (885)
T KOG0059|consen  784 ELKSR  788 (885)
T ss_pred             HHHhh
Confidence            98754

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.1e-35  Score=324.99  Aligned_cols=199  Identities=20%  Similarity=0.273  Sum_probs=159.1

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeeccccccccccCcccccchhhhhhhh
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA  127 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (348)
                      .+.+|+|+|+.|++||+++|+||||||||||||+|+|.+.|+   +|+|.++|.+.....              .++.++
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~--------------~~~~i~  242 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV--------------PRKTSA  242 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc--------------ccceeE
Confidence            456999999999999999999999999999999999999888   899999997642110              123355


Q ss_pred             hcCCCccccccchHHHHH-hc--cCC----------CC-H---------------------------HHHHHHHHHcCCC
Q 018938          128 FAGFEVPIQMDVSAEKMI-FG--VAG----------ID-P---------------------------QRRAELIKVLDID  166 (348)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~-~~--~~~----------~~-~---------------------------~~~~~~l~~l~l~  166 (348)
                      |+.++......+++.+.+ +.  ..+          .. .                           ..++.+++.+|+.
T Consensus       243 yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~  322 (1470)
T PLN03140        243 YISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLD  322 (1470)
T ss_pred             EecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCc
Confidence            555554444445554432 11  100          00 0                           0134578888885


Q ss_pred             c-------CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh-hhhh
Q 018938          167 L-------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF-DGLE  238 (348)
Q Consensus       167 ~-------~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~  238 (348)
                      .       +..+..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++++.|.|||+++|+. .++.
T Consensus       323 ~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~  402 (1470)
T PLN03140        323 ICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETF  402 (1470)
T ss_pred             cccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHH
Confidence            2       4467899999999999999999999999999999999999999999999999876799999999996 6888


Q ss_pred             hhCCEEEEEcCCEEeeecChhHHHH
Q 018938          239 NWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       239 ~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      .+||+|++|++|++++.|+.+++..
T Consensus       403 ~lfD~vilL~~G~ivy~G~~~~~~~  427 (1470)
T PLN03140        403 DLFDDIILLSEGQIVYQGPRDHILE  427 (1470)
T ss_pred             HHhheEEEeeCceEEEeCCHHHHHH
Confidence            9999999999999999999988753

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.7e-35  Score=274.48  Aligned_cols=213  Identities=23%  Similarity=0.336  Sum_probs=179.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .+.+.+++|.|.        +.+++|+++||++++|+.++++||+|+||||++++|-..+.+.+|.|.++|+++...   
T Consensus       262 ~v~F~~V~F~y~--------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~v---  330 (497)
T COG5265         262 AVAFINVSFAYD--------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV---  330 (497)
T ss_pred             eEEEEEEEeecc--------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHh---
Confidence            478999999996        368999999999999999999999999999999999999999999999999876432   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-------C--cC----ccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-------D--LS----WRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~--~~----~~~~~LSg  176 (348)
                              ..+..++.++.++|+..++.+....++.++......+.+....+...+       +  .+    .+.-.|||
T Consensus       331 --------tq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSg  402 (497)
T COG5265         331 --------TQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSG  402 (497)
T ss_pred             --------HHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccC
Confidence                    123467889999998888777777777776655554444333333221       1  12    23456999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||+++.+|++|+|||.||+||..+.+++...|++..  .|.|-+++-|.+..+.. ||.|++|++|+|++.|
T Consensus       403 gekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlsti~~-adeiivl~~g~i~erg  479 (497)
T COG5265         403 GEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERG  479 (497)
T ss_pred             chHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhccC-CceEEEeeCCEEEecC
Confidence            99999999999999999999999999999999999999999975  48899999999999976 9999999999999999


Q ss_pred             ChhHHHHh
Q 018938          257 PMDKVKEA  264 (348)
Q Consensus       257 ~~~~~~~~  264 (348)
                      +.+++...
T Consensus       480 ~h~~ll~~  487 (497)
T COG5265         480 THEELLAA  487 (497)
T ss_pred             cHHHHHHc
Confidence            99998765

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.3e-34  Score=321.48  Aligned_cols=184  Identities=24%  Similarity=0.367  Sum_probs=141.8

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|..                        +|+++
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~i------------------------ayv~Q  494 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRI------------------------SFSPQ  494 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE------------------------EEEeC
Confidence            468999999999999999999999999999999999999999999998742                        22222


Q ss_pred             CccccccchHHHHHhccCCCCHHHHHHHHH---------HcCCC----cCccCCCCCHHHHHHHHHHHHHccCCcEEEee
Q 018938          132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIK---------VLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD  198 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~l~l~----~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLD  198 (348)
                      +..++.....+++.++.. .+.++..++++         .+...    ...+..+|||||||||+|||||+.+|+++|||
T Consensus       495 ~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD  573 (1490)
T TIGR01271       495 TSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD  573 (1490)
T ss_pred             CCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            222222212233333321 12222222222         22111    23456899999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          199 EITVDLDVLARADLLRF-LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       199 EPtsgLD~~~~~~l~~~-l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      |||++||+..+..+++. +..+.  .|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++..
T Consensus       574 ep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~  636 (1490)
T TIGR01271       574 SPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQA  636 (1490)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999985 56654  38999999999999875 99999999999999999998865

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-34  Score=243.49  Aligned_cols=215  Identities=22%  Similarity=0.338  Sum_probs=156.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|.++|++|+|--....  .-.-++|+++||+++.|||++|-||||||||||||+|-|-+.|++|+|.+.-..-+-+..
T Consensus         3 ~~l~v~~~~KtFtlH~q~--Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~   80 (235)
T COG4778           3 TPLNVSNVSKTFTLHQQG--GVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLV   80 (235)
T ss_pred             ceeeeecchhheEeeecC--CEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhh
Confidence            358999999998210000  013579999999999999999999999999999999999999999999885322111100


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc---cCCCC----HHHHHHHHHHcCCCc---CccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VAGID----PQRRAELIKVLDIDL---SWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~l~~l~l~~---~~~~~~LSgGq  178 (348)
                        ...... +-...++.++|+.|.....+....-+....   -.+..    ..++..++.++++..   .-.|.++||||
T Consensus        81 --~a~pr~-vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE  157 (235)
T COG4778          81 --TAEPRE-VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE  157 (235)
T ss_pred             --ccChHH-HHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence              000000 011123556776543332222222222110   11222    245567888888862   34689999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ||||.|||.++.+-+||+|||||++||..+++.+.++|.+. +..|.++|=|-||-+.=+.+|||++.|..
T Consensus       158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-HhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            99999999999999999999999999999999999999985 56799999999999888899999988753

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.9e-34  Score=233.41  Aligned_cols=195  Identities=21%  Similarity=0.281  Sum_probs=154.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeecccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAFHD  106 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~~~  106 (348)
                      ++.++||+.+.+         +.-.|-++||+|.+||++.|+||||||||||+..+.|.+.+.   +|++.++++.+..-
T Consensus         2 ~l~l~nvsl~l~---------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~l   72 (213)
T COG4136           2 MLCLKNVSLRLP---------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML   72 (213)
T ss_pred             ceeeeeeeecCC---------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecccc
Confidence            588999998874         467899999999999999999999999999999999977553   57788877653211


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhccC----CC-CHHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGVA----GI-DPQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~-~~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                                  + .-++.+++.+++..+++.+++. ++.+.++    +. .+..+...++..+++  .++.|.+|||||
T Consensus        73 ------------P-a~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQ  139 (213)
T COG4136          73 ------------P-AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQ  139 (213)
T ss_pred             ------------c-hhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcch
Confidence                        1 1245566665555555555543 3333332    11 123456778888886  478899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      |-||+|-|+|+..|+.++||||+|.||...+.++.+++-.-.++.|...|+||||.+.+. ...||+.|
T Consensus       140 rARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~  207 (213)
T COG4136         140 RARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM  207 (213)
T ss_pred             HHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence            999999999999999999999999999999999999998888888999999999999987 45666654

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=5.2e-33  Score=309.07  Aligned_cols=186  Identities=19%  Similarity=0.260  Sum_probs=140.4

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG  130 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.                        ++|++
T Consensus       672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~------------------------i~yv~  727 (1560)
T PTZ00243        672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS------------------------IAYVP  727 (1560)
T ss_pred             CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCe------------------------EEEEe
Confidence            356999999999999999999999999999999999999999999876432                        22332


Q ss_pred             CCccccccchHHH-HHhccCCCCHHHHH---------HHHHHc--CCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEE
Q 018938          131 FEVPIQMDVSAEK-MIFGVAGIDPQRRA---------ELIKVL--DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLL  196 (348)
Q Consensus       131 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~l~~l--~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLl  196 (348)
                      |+..++ ..+..+ +.++. ..+.++..         +.++.+  |+.  .+.+..+|||||||||+|||||+.+|+++|
T Consensus       728 Q~~~l~-~~Tv~enI~~~~-~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~ill  805 (1560)
T PTZ00243        728 QQAWIM-NATVRGNILFFD-EEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYL  805 (1560)
T ss_pred             CCCccC-CCcHHHHHHcCC-hhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            332222 223333 22221 11111222         223333  332  256788999999999999999999999999


Q ss_pred             eeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHh
Q 018938          197 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       197 LDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  264 (348)
                      |||||++||+.....+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus       806 LDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~~  871 (1560)
T PTZ00243        806 LDDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMRT  871 (1560)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHhC
Confidence            9999999999999888764432222 4899999999999985 6999999999999999999988753

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=6e-33  Score=283.72  Aligned_cols=215  Identities=19%  Similarity=0.322  Sum_probs=176.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC---CCceEEEcCeecccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV---EPEMVKVLGRSAFHD  106 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~---~~G~i~i~G~~~~~~  106 (348)
                      .+..++++..-.....    ..+.+|++||..+++||+.||+||+||||||||++|+|....   .+|+|.+||+...  
T Consensus        25 ~~~~~~~~~~~~~~~~----~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~--   98 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSK----KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD--   98 (613)
T ss_pred             eeEEEEEEEEecCCCC----ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc--
Confidence            4778899888753110    147899999999999999999999999999999999998653   6789999995421  


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-----ccCC-CC----HHHHHHHHHHcCCC--cCccC---
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-----GVAG-ID----PQRRAELIKVLDID--LSWRM---  171 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~----~~~~~~~l~~l~l~--~~~~~---  171 (348)
                                  ...+++..+|+.|+..+...++++|.+.     .++. .+    .++++++++.+++.  .+..+   
T Consensus        99 ------------~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~  166 (613)
T KOG0061|consen   99 ------------SRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNP  166 (613)
T ss_pred             ------------hhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCC
Confidence                        1235566788888888888888887542     1222 12    24677889999986  34444   


Q ss_pred             --CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEc
Q 018938          172 --HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVA  248 (348)
Q Consensus       172 --~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~  248 (348)
                        ..+|||||+||+||.-|+++|.||+|||||+|||..+..++++.|++++++ |+|||++-|.+. .+..+.|++++|.
T Consensus       167 ~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs  245 (613)
T KOG0061|consen  167 GIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLS  245 (613)
T ss_pred             CCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhc
Confidence              469999999999999999999999999999999999999999999999987 999999999985 6777899999999


Q ss_pred             CCEEeeecChhHHHH
Q 018938          249 HGKLQLAMPMDKVKE  263 (348)
Q Consensus       249 ~G~i~~~g~~~~~~~  263 (348)
                      +|++++.|++++..+
T Consensus       246 ~G~~vy~G~~~~~~~  260 (613)
T KOG0061|consen  246 EGEVVYSGSPRELLE  260 (613)
T ss_pred             CCcEEEecCHHHHHH
Confidence            999999999986643

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1.3e-32  Score=253.27  Aligned_cols=202  Identities=17%  Similarity=0.237  Sum_probs=139.3

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh--------CC--CcCCCc-----------eEEEcCeecccccccc
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG--------GK--HMVEPE-----------MVKVLGRSAFHDTALT  110 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~--------Gl--~~~~~G-----------~i~i~G~~~~~~~~~~  110 (348)
                      ...|+|||++|+.|.+++|+|+||||||||++.+.        +.  ..|..+           -|.++..++.......
T Consensus         8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~   87 (261)
T cd03271           8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN   87 (261)
T ss_pred             hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence            45799999999999999999999999999998662        11  012111           2333333321111100


Q ss_pred             ccCccccc--chhh-------------hh---hhhhcCCCccccccchHHHHHhccCC-CCHHHHHHHHHHcCCC---cC
Q 018938          111 SSGDLSYL--GGEW-------------RR---EVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRRAELIKVLDID---LS  168 (348)
Q Consensus       111 ~~~~~~~~--~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~---~~  168 (348)
                         ...|.  .+..             ..   .+.|.+.+......++..+....+.. ....+..++++.+++.   .+
T Consensus        88 ---~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~  164 (261)
T cd03271          88 ---PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLG  164 (261)
T ss_pred             ---HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhc
Confidence               01111  0111             11   12222333333334444443211111 1124456788888885   36


Q ss_pred             ccCCCCCHHHHHHHHHHHHHccC---CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKP---FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV  245 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~---P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~  245 (348)
                      +++.+|||||+||++||++|+.+   |+++||||||+|||+..+..++++|+++.+ .|.|||++||+++++. .||+++
T Consensus       165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~i~-~aD~ii  242 (261)
T cd03271         165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDVIK-CADWII  242 (261)
T ss_pred             CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCEEE
Confidence            78899999999999999999996   799999999999999999999999999864 5899999999999986 699999


Q ss_pred             EE------cCCEEeeecCh
Q 018938          246 YV------AHGKLQLAMPM  258 (348)
Q Consensus       246 ~l------~~G~i~~~g~~  258 (348)
                      +|      ++|+|++.|++
T Consensus       243 ~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         243 DLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             EecCCcCCCCCEEEEeCCC
Confidence            99      89999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=7e-33  Score=240.13  Aligned_cols=277  Identities=19%  Similarity=0.261  Sum_probs=194.0

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC----CCceEEEcCeecc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV----EPEMVKVLGRSAF  104 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~----~~G~i~i~G~~~~  104 (348)
                      +.+.++||+..+....     |...+++++|+++++||+-||+|+||||||-..|.|+|..+-    +....++++.+..
T Consensus         2 ~LLDIrnL~IE~~Tsq-----G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL   76 (330)
T COG4170           2 PLLDIRNLTIEFKTSQ-----GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLL   76 (330)
T ss_pred             CcccccceEEEEecCC-----CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhh
Confidence            4788999999996532     567899999999999999999999999999999999997531    1111222222111


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccch---HHHHHhc------------cCCCCHHHHHHHHHHcCCCc--
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS---AEKMIFG------------VAGIDPQRRAELIKVLDIDL--  167 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------~~~~~~~~~~~~l~~l~l~~--  167 (348)
                      .-.+   .....    ...+.+++.+++..-..+-+   ...++..            ..++.+.++-+++..+|+..  
T Consensus        77 ~L~P---r~RRk----~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk  149 (330)
T COG4170          77 RLSP---RERRK----LVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK  149 (330)
T ss_pred             cCCh---HHhhh----hhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH
Confidence            1100   00000    11233444433322111111   1111111            11234456678888999853  


Q ss_pred             ---CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          168 ---SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       168 ---~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                         ..++.+|--||-|+|+||.|++.+|++||.||||+++|+.++.+++.+|.++.+..|.||+++|||+..+.++||++
T Consensus       150 DIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i  229 (330)
T COG4170         150 DIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI  229 (330)
T ss_pred             HHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhhe
Confidence               34789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCEEeeecChhHHHHhhhhhhHHHHHHHhhhhhHH-HHHHHHHHHhCCCCCcccCCCCCccccChHHHHH
Q 018938          245 VYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDE-ERKRRRERKASGLPEFDKQIHGSRVTGDPAQAAV  317 (348)
Q Consensus       245 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (348)
                      -||.-|+-++.++.+++.+.+.+.+.+.+...+....+. ..+.+.....+.+|.++..+-||+.-++.+-+..
T Consensus       230 ~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~PDF~~~lp~KsrL~tL~G~iP~Le~lPiGCRLGPRCP~AQk  303 (330)
T COG4170         230 NVLYCGQTVESAPSEELVTMPHHPYTQALIRAIPDFGSALPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQR  303 (330)
T ss_pred             EEEEecccccccchhHHhcCCCCchHHHHHHhCccccccCcchhhhccCCCcCchhhhCCcccccCCCCchhhh
Confidence            999999999999999999988877655443332211110 1112223334667777777888887665544443

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.98  E-value=3.6e-33  Score=235.51  Aligned_cols=209  Identities=22%  Similarity=0.303  Sum_probs=163.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ++.++||+..-             -|-.+|.++..||++-+|||||||||||+-.++|+. |-+|+|.+.|.+....   
T Consensus         3 l~qln~v~~~t-------------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~---   65 (248)
T COG4138           3 LMQLNDVAEST-------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAW---   65 (248)
T ss_pred             eeeeccccccc-------------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHH---
Confidence            57888887642             467899999999999999999999999999999985 7899999999865321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCH---HHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDP---QRRAELIKVLDID--LSWRMHKVSDGQRRRVQI  184 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l  184 (348)
                              -..++.+..+|..++....+.+.+..++. +...+.   ..+.++...++++  +.+.+++|||||.|||-+
T Consensus        66 --------~~~eLArhRAYLsQqq~p~f~mpV~~YL~-L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRL  136 (248)
T COG4138          66 --------SATELARHRAYLSQQQTPPFAMPVWHYLT-LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL  136 (248)
T ss_pred             --------hHhHHHHHHHHHhhccCCcchhhhhhhhh-hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEE
Confidence                    11234444555544433333333333321 111112   3455677777775  467889999999999999


Q ss_pred             HHHHcc-------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          185 CMGLLK-------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       185 AraL~~-------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |...++       ..++||+|||.++||...+..+..+|.++|+. |.+|||++||++.-.+.+|++++++.|++...|.
T Consensus       137 Aav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~  215 (248)
T COG4138         137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGR  215 (248)
T ss_pred             eEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecc
Confidence            988764       33799999999999999999999999999965 9999999999999999999999999999999999


Q ss_pred             hhHHHHhh
Q 018938          258 MDKVKEAS  265 (348)
Q Consensus       258 ~~~~~~~~  265 (348)
                      .+++.+..
T Consensus       216 ~~eVlt~~  223 (248)
T COG4138         216 REEVLTPP  223 (248)
T ss_pred             hhhhcChH
Confidence            99987643

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.98  E-value=1.4e-31  Score=286.56  Aligned_cols=216  Identities=16%  Similarity=0.225  Sum_probs=176.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      -.|+++|++.+|.+       +-..||+||||+|++||.+||||..|||||||+++|-.+..|.+|+|.|||.++.+   
T Consensus      1137 G~I~f~~~~~RYrp-------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~--- 1206 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP-------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISK--- 1206 (1381)
T ss_pred             CeEEEEEeEEEeCC-------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccc---
Confidence            35999999999964       45689999999999999999999999999999999999999999999999987532   


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC---------CcCcc----CCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI---------DLSWR----MHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~LS  175 (348)
                            +..  .++|.+++..+|++.++..... .++-.+...++++..++++...+         .++..    ..++|
T Consensus      1207 ------igL--~dLRsrlsIIPQdPvLFsGTvR-~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~S 1277 (1381)
T KOG0054|consen 1207 ------IGL--HDLRSRLSIIPQDPVLFSGTVR-FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFS 1277 (1381)
T ss_pred             ------ccH--HHHHhcCeeeCCCCceecCccc-cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCC
Confidence                  111  3578888888887766544322 22222223345566666666543         12322    35799


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      -||||.++|||||+++.+||+|||+|+++|+++-..|.+.|++.-  .++|||.|-|+++.+.. ||||+||++|++++.
T Consensus      1278 vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1278 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF 1354 (1381)
T ss_pred             hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccchhhh-cCeEEEeeCCeEeec
Confidence            999999999999999999999999999999999999999999864  37999999999999987 899999999999999


Q ss_pred             cChhHHHHhhh
Q 018938          256 MPMDKVKEASK  266 (348)
Q Consensus       256 g~~~~~~~~~~  266 (348)
                      ++|.++.+++.
T Consensus      1355 dsP~~Ll~~~~ 1365 (1381)
T KOG0054|consen 1355 DSPAELLSDKD 1365 (1381)
T ss_pred             CChHHHHhCCc
Confidence            99999987543

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.97  E-value=3.3e-31  Score=256.41  Aligned_cols=220  Identities=24%  Similarity=0.319  Sum_probs=149.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      -+.+.|+++.|.         +..+++|++|++.+|+.+||+|+|||||||+|++|.|-..|.+-++.+.-..  .+...
T Consensus        75 dvk~~sls~s~~---------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls--~e~~p  143 (614)
T KOG0927|consen   75 DVKIESLSLSFH---------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS--REIEP  143 (614)
T ss_pred             cceeeeeeeccC---------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc--ccCCC
Confidence            489999999995         4789999999999999999999999999999999999888877654332110  00000


Q ss_pred             cccCcccccc---hhhhhhhhhcC----CCccccccchHHHHHhccCCCC----HHHHHHHHHHcCCC---cCccCCCCC
Q 018938          110 TSSGDLSYLG---GEWRREVAFAG----FEVPIQMDVSAEKMIFGVAGID----PQRRAELIKVLDID---LSWRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~l~l~---~~~~~~~LS  175 (348)
                      .....+..+.   ...+.++.+..    +.......-...+........+    ..++.+++.-++..   .++....||
T Consensus       144 s~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S  223 (614)
T KOG0927|consen  144 SEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS  223 (614)
T ss_pred             chHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence            0000000000   00011111100    0000000000001110010111    22344555556543   356789999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE-Eee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK-LQL  254 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~-i~~  254 (348)
                      ||||.|++|||+|..+|++|||||||+|||++++.++-+.|.++-   ..++++++|+.+++..+|++|+.|++++ +.+
T Consensus       224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y  300 (614)
T KOG0927|consen  224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY  300 (614)
T ss_pred             chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---CceEEEEecchhhhhhHhhhhheecccceeee
Confidence            999999999999999999999999999999999999999998652   1289999999999999999999999999 567


Q ss_pred             ecChhHHHH
Q 018938          255 AMPMDKVKE  263 (348)
Q Consensus       255 ~g~~~~~~~  263 (348)
                      .|+.+++..
T Consensus       301 ~Gnydqy~~  309 (614)
T KOG0927|consen  301 EGNYDQYVK  309 (614)
T ss_pred             cCCHHHHhh
Confidence            789888754

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.97  E-value=8.4e-32  Score=239.18  Aligned_cols=164  Identities=19%  Similarity=0.216  Sum_probs=119.6

Q ss_pred             eeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc---------eEEEcCeeccccccccccCcccccchhhhhhh
Q 018938           56 NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE---------MVKVLGRSAFHDTALTSSGDLSYLGGEWRREV  126 (348)
Q Consensus        56 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G---------~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (348)
                      ++++|++++| +++|+||||||||||+++|+|++.+..|         .+.+.|.....              ......+
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~v   78 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK--------------PANFAEV   78 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC--------------CCceEEE
Confidence            6789999999 9999999999999999999998765533         22222221100              0011234


Q ss_pred             hhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHc----cCCcEEEeeccCC
Q 018938          127 AFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITV  202 (348)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~----~~P~lLlLDEPts  202 (348)
                      +++++....+         +...  ..+++.++++. .-..++++.+||||||||++||++|+    .+|+++||||||+
T Consensus        79 ~~vfq~~~~~---------~~~~--~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~  146 (197)
T cd03278          79 TLTFDNSDGR---------YSII--SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDA  146 (197)
T ss_pred             EEEEEcCCCc---------eeEE--ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcc
Confidence            4443332221         1110  12345566665 21246678999999999999999987    4679999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          203 DLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       203 gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      +||+..+..+.++|+++.+  +.|||++||+++++ .+||+++.|..
T Consensus       147 ~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~~~-~~~d~v~~~~~  190 (197)
T cd03278         147 ALDDANVERFARLLKEFSK--ETQFIVITHRKGTM-EAADRLYGVTM  190 (197)
T ss_pred             cCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-hhcceEEEEEe
Confidence            9999999999999999853  68999999999987 58999998864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=7.8e-31  Score=280.92  Aligned_cols=204  Identities=23%  Similarity=0.349  Sum_probs=165.0

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      ..+.++++|.+++++..      +..+.|+||||+|++|+.+||+|+-|||||+||.+|+|.++..+|++.++|..    
T Consensus       515 ~~~~i~i~~~sfsW~~~------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsi----  584 (1381)
T KOG0054|consen  515 GENAIEIKNGSFSWDSE------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSV----  584 (1381)
T ss_pred             CCceEEEeeeeEecCCC------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeE----
Confidence            34579999999999641      24559999999999999999999999999999999999999999999998852    


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCc-------------CccCCC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL-------------SWRMHK  173 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------------~~~~~~  173 (348)
                                          +|.+|+.-++.....++++++. ..++++.+++++...|..             ..+.-+
T Consensus       585 --------------------aYv~Q~pWI~ngTvreNILFG~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGin  643 (1381)
T KOG0054|consen  585 --------------------AYVPQQPWIQNGTVRENILFGS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGIN  643 (1381)
T ss_pred             --------------------EEeccccHhhCCcHHHhhhcCc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccC
Confidence                                2333333333333345555553 346777778877766531             234568


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      ||||||||++||||+.++.|++|||-|+|++|.+....+++-.-... -.++|+|+|||.++++.. ||.|++|++|+|.
T Consensus       644 LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~  721 (1381)
T KOG0054|consen  644 LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQLQFLPH-ADQIIVLKDGKIV  721 (1381)
T ss_pred             CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCchhhhhh-CCEEEEecCCeEe
Confidence            99999999999999999999999999999999999998876554332 347899999999998875 9999999999999


Q ss_pred             eecChhHHHH
Q 018938          254 LAMPMDKVKE  263 (348)
Q Consensus       254 ~~g~~~~~~~  263 (348)
                      +.|+.+++.+
T Consensus       722 ~~Gty~el~~  731 (1381)
T KOG0054|consen  722 ESGTYEELLK  731 (1381)
T ss_pred             cccCHHHHHh
Confidence            9999999875

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.3e-30  Score=255.30  Aligned_cols=219  Identities=21%  Similarity=0.314  Sum_probs=164.8

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .+.++++|++..             ..++|+||++.+||++||.|-=|||+|-|+++|.|..++.+|+|.++|+++....
T Consensus       261 ~~~l~v~~l~~~-------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s  327 (500)
T COG1129         261 EPVLEVRNLSGG-------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS  327 (500)
T ss_pred             CcEEEEecCCCC-------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC
Confidence            467888888743             2589999999999999999999999999999999998899999999999754322


Q ss_pred             cc-cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc-cCCCCH----HHHHHHHHHcCCC---cCccCCCCCHH
Q 018938          108 AL-TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG-VAGIDP----QRRAELIKVLDID---LSWRMHKVSDG  177 (348)
Q Consensus       108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~----~~~~~~l~~l~l~---~~~~~~~LSgG  177 (348)
                      +. .-...+.|++.+.+..-.+......  .+++...+. +. ....+.    ....++.+.+++.   .+..+.+||||
T Consensus       328 p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~--~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGG  405 (500)
T COG1129         328 PRDAIKAGIAYVPEDRKSEGLVLDMSIA--ENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGG  405 (500)
T ss_pred             HHHHHHcCCEeCCcccccCcCcCCCcHH--HheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCch
Confidence            11 0112344444433322222222211  122221111 01 001222    2345677778774   45778999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      .||||.|||.|+.+|++|||||||.|+|.-++.+|+++|++++++ |++||++|-++.++..+||||+||++|+++..-+
T Consensus       406 NQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~  484 (500)
T COG1129         406 NQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELD  484 (500)
T ss_pred             hhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence            999999999999999999999999999999999999999999865 9999999999999999999999999999998766


Q ss_pred             hhHHH
Q 018938          258 MDKVK  262 (348)
Q Consensus       258 ~~~~~  262 (348)
                      .+++.
T Consensus       485 ~~~~t  489 (500)
T COG1129         485 REEAT  489 (500)
T ss_pred             cccCC
Confidence            66543

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.97  E-value=2.1e-31  Score=257.69  Aligned_cols=205  Identities=23%  Similarity=0.335  Sum_probs=158.1

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      +.|.|.++|++|.|.+        +..++++++|-|..++.+++|||||||||||||+++|.+.|..|.|.-.-..    
T Consensus       386 p~pvi~~~nv~F~y~~--------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~----  453 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSD--------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN----  453 (614)
T ss_pred             CCCeEEEeccccCCCC--------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc----
Confidence            4678999999999963        3479999999999999999999999999999999999999999876432111    


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCC-CCHHHHHHHHHHcCCCc---CccCCCCCHHHHHH
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAG-IDPQRRAELIKVLDIDL---SWRMHKVSDGQRRR  181 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~l~l~~---~~~~~~LSgGqrQR  181 (348)
                             .+.+.    .++.+.     ....+.+.-++. -.+.. ...+.+..++..+|+..   ..++.+||+|||.|
T Consensus       454 -------~~~~y----~Qh~~e-----~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~r  517 (614)
T KOG0927|consen  454 -------KLPRY----NQHLAE-----QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRR  517 (614)
T ss_pred             -------cchhh----hhhhHh-----hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchh
Confidence                   11111    111111     011112222222 12222 34567788999999963   45789999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDK  260 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~  260 (348)
                      |.+|++++.+|.+|||||||||||..+...+.+.|.++    ..+||+||||+.++.+++++|++..+|.+. ..|....
T Consensus       518 VlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~  593 (614)
T KOG0927|consen  518 VLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI  593 (614)
T ss_pred             HHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence            99999999999999999999999999999988888754    568999999999999999999999998875 4577666


Q ss_pred             HHH
Q 018938          261 VKE  263 (348)
Q Consensus       261 ~~~  263 (348)
                      ...
T Consensus       594 yk~  596 (614)
T KOG0927|consen  594 YKE  596 (614)
T ss_pred             HHH
Confidence            544

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=8.6e-31  Score=252.22  Aligned_cols=198  Identities=25%  Similarity=0.311  Sum_probs=142.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      -|.+.+++..|+         ++.+|.+-++++..|..+||+|+||+|||||||+|+-      |.|......  +    
T Consensus        80 Di~~~~fdLa~G---------~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve--q----  138 (582)
T KOG0062|consen   80 DIHIDNFDLAYG---------GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE--Q----  138 (582)
T ss_pred             ceeeeeeeeeec---------chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch--h----
Confidence            488899999994         5789999999999999999999999999999999986      222221110  0    


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc----CCCCHHHHH-HHHHHcCCCc---CccCCCCCHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV----AGIDPQRRA-ELIKVLDIDL---SWRMHKVSDGQRRR  181 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~l~~l~l~~---~~~~~~LSgGqrQR  181 (348)
                          ++.  +.... .  .  ++ ....+.....++..-    .....+.+. ++|.-+|...   .++..+||||+|.|
T Consensus       139 ----E~~--g~~t~-~--~--~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMr  206 (582)
T KOG0062|consen  139 ----EVR--GDDTE-A--L--QS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMR  206 (582)
T ss_pred             ----hee--ccchH-H--H--hh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhH
Confidence                000  00000 0  0  00 001111111111100    111222233 3777788763   46789999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDK  260 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~  260 (348)
                      ++|||||..+|||||||||||.||..+..++.+.|..+    +.|+|+||||..|+..+|..|+.+++-++- +.|+.++
T Consensus       207 laLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~  282 (582)
T KOG0062|consen  207 LALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQ  282 (582)
T ss_pred             HHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence            99999999999999999999999999999998888754    589999999999999999999999988874 5688887


Q ss_pred             HHHh
Q 018938          261 VKEA  264 (348)
Q Consensus       261 ~~~~  264 (348)
                      +...
T Consensus       283 Fvk~  286 (582)
T KOG0062|consen  283 FVKT  286 (582)
T ss_pred             HHHh
Confidence            7543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.97  E-value=8.5e-31  Score=218.81  Aligned_cols=131  Identities=26%  Similarity=0.411  Sum_probs=102.0

Q ss_pred             eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938           55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP  134 (348)
Q Consensus        55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (348)
                      |+|+||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.++....           ....+..+++.++...
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~   69 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID-----------IEELRRRIGYVPQDPQ   69 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH-----------HHHHHHTEEEEESSHC
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc-----------cccccccccccccccc
Confidence            78999999999999999999999999999999999999999999998754311           1123455666655544


Q ss_pred             ccccchHHHHHhccCCCCHHHHHHHHHHcCCCc------CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCC
Q 018938          135 IQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL------SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV  202 (348)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPts  202 (348)
                      +....+..+.      ....+..++++.+++..      ++++.+||+||||||+||+||+.+|++||||||||
T Consensus        70 ~~~~~tv~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   70 LFPGLTVREN------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHTTSBHHHH------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccc------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            4444444433      12345667778777532      33459999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.97  E-value=3.6e-30  Score=231.55  Aligned_cols=191  Identities=19%  Similarity=0.165  Sum_probs=124.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEe-CCCEEEEECCCCCcHHHHHHHHhCCC-cCCCceEEEcCeeccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLN-AGDRCLLVGSNGAGKTTILKIIGGKH-MVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~-~Ge~~~liG~NGsGKSTLlk~i~Gl~-~~~~G~i~i~G~~~~~~~  107 (348)
                      .|+++|+. +|.+         .   .+++|+.. +|++++|+||||||||||+++|++.+ -+..+.......     .
T Consensus         5 ~i~l~nf~-~y~~---------~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~-----~   66 (213)
T cd03279           5 KLELKNFG-PFRE---------E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENL-----R   66 (213)
T ss_pred             EEEEECCc-CcCC---------c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhH-----H
Confidence            48899988 6631         2   56677654 58999999999999999999999643 222222211100     0


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHH--HHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAE--LIKVLDID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l~l~--~~~~~~~LSgGqrQRv~  183 (348)
                      .     .+..  ......+.+..+........      ....+.+.+...+  .+...++.  .++++.+|||||+||++
T Consensus        67 ~-----~~~~--~~~~~~v~~~f~~~~~~~~~------~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~  133 (213)
T cd03279          67 S-----VFAP--GEDTAEVSFTFQLGGKKYRV------ERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLAS  133 (213)
T ss_pred             H-----HhcC--CCccEEEEEEEEECCeEEEE------EEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHH
Confidence            0     0000  00011111111110000000      0011233322222  12222222  36778999999999999


Q ss_pred             HHHHHcc----------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          184 ICMGLLK----------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       184 lAraL~~----------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      |||||+.          +|++|||||||++||+..+..+.+.|.++++ .+.|||++||+++++..+||+++++++|..
T Consensus       134 la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence            9999984          6789999999999999999999999999864 488999999999999999999999998853

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.8e-30  Score=240.83  Aligned_cols=201  Identities=22%  Similarity=0.369  Sum_probs=158.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|+.|.|..        ...-+..||++|++||++-|+|.||||||||+++++|++.|++|+|.++|+++..+.. 
T Consensus       322 ~lelrnvrfay~~--------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~l-  392 (546)
T COG4615         322 TLELRNVRFAYQD--------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQL-  392 (546)
T ss_pred             ceeeeeeeeccCc--------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCH-
Confidence            5999999999963        2256789999999999999999999999999999999999999999999987643221 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCC-CCHHHHHHHHHHcCCCc-----Cc--cCCCCCHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG-IDPQRRAELIKVLDIDL-----SW--RMHKVSDGQRRR  181 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~-----~~--~~~~LSgGqrQR  181 (348)
                                .++|+-++-++.+..++     ... .+..+ .+...++..++++.+..     +.  ..-.||.|||+|
T Consensus       393 ----------edYR~LfSavFsDyhLF-----~~l-l~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR  456 (546)
T COG4615         393 ----------EDYRKLFSAVFSDYHLF-----DQL-LGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR  456 (546)
T ss_pred             ----------HHHHHHHHHHhhhHhhh-----Hhh-hCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHH
Confidence                      12333333221111111     111 12222 34566777888776631     22  346899999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      +++.-||+-+-+|+++||=.+.-||.-|+.+++.+.-+.++.|+||+.||||-... ..|||++.|++|++++..
T Consensus       457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT  530 (546)
T ss_pred             HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence            99999999999999999999999999999999998888889999999999996544 579999999999998764

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=1.4e-29  Score=231.95  Aligned_cols=78  Identities=24%  Similarity=0.336  Sum_probs=69.3

Q ss_pred             CccCCCCCHHHHHHHHHHHHHc----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  243 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~  243 (348)
                      +.++.+||||||||++|||||+    .+|+++||||||++||+.++..+++.|+++.+  +.+||++||+.+ +..+||+
T Consensus       153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~-~~~~~d~  229 (243)
T cd03272         153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPE-LLEVADK  229 (243)
T ss_pred             cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH-HHhhCCE
Confidence            5678999999999999999996    36899999999999999999999999999753  778888888865 6689999


Q ss_pred             EEEEc
Q 018938          244 IVYVA  248 (348)
Q Consensus       244 v~~l~  248 (348)
                      +++|.
T Consensus       230 i~~l~  234 (243)
T cd03272         230 FYGVK  234 (243)
T ss_pred             EEEEE
Confidence            99885

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=9.1e-30  Score=228.60  Aligned_cols=185  Identities=16%  Similarity=0.247  Sum_probs=116.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      -|+++|.. +|+         +..++++++|     ++++|+||||||||||+++|.-.          +|.+....   
T Consensus         5 ~l~l~nfk-~~~---------~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~----------~G~~~~~~---   56 (212)
T cd03274           5 KLVLENFK-SYA---------GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV----------FGFRASKM---   56 (212)
T ss_pred             EEEEECcc-cCC---------CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH----------hccCHHHh---
Confidence            37788876 773         4679999988     89999999999999999999721          12111000   


Q ss_pred             cccCcccccchhhhhhhhhcC---CCccccc-cchHHHH--HhccCCCCHH---HHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAG---FEVPIQM-DVSAEKM--IFGVAGIDPQ---RRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~--~~~~~~~~~~---~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                       ....+.++.+.   ...+..   .+..... .......  ..+.......   ...++++.+++.  .++++..||+||
T Consensus        57 -~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~  132 (212)
T cd03274          57 -RQKKLSDLIHN---SAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGE  132 (212)
T ss_pred             -hhhhHHHHhcC---CCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHH
Confidence             00011111000   000000   0000000 0000000  0111100000   013344555554  355688999999


Q ss_pred             HHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          179 RRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       179 rQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      |||++||+|++.    +|+++||||||+|||+.++..+++.|+++.  .+.|+|++||+. ++..+||++++|..
T Consensus       133 ~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~--~~~~~iivs~~~-~~~~~~d~v~~~~~  204 (212)
T cd03274         133 KTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT--KNAQFIVISLRN-NMFELADRLVGIYK  204 (212)
T ss_pred             HHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence            999999999974    589999999999999999999999999974  367999999995 56789999999864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.96  E-value=8.7e-28  Score=253.67  Aligned_cols=108  Identities=20%  Similarity=0.313  Sum_probs=97.0

Q ss_pred             HHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 018938          156 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  229 (348)
Q Consensus       156 ~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvii  229 (348)
                      ..++++.+++.   .++++.+|||||+||+.||++|+.+|   +++||||||+|||+..+..++++|+++.+ .|.|||+
T Consensus       810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIi  888 (943)
T PRK00349        810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVV  888 (943)
T ss_pred             HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence            34567777875   36788999999999999999999999   99999999999999999999999999864 5899999


Q ss_pred             EecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHhh
Q 018938          230 ATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       230 vtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~  265 (348)
                      |||+++++. .||+|++|      ++|++++.|+++++...+
T Consensus       889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~  929 (943)
T PRK00349        889 IEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKVE  929 (943)
T ss_pred             EecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence            999999985 79999999      799999999999987644

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.9e-28  Score=231.83  Aligned_cols=202  Identities=20%  Similarity=0.302  Sum_probs=154.2

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      ..|+|-+.+|+|.|+        |.++.+..++|-|.--..+||+||||.||||||++|.|-+.|..|+.+-+-.     
T Consensus       583 ~PPvLGlH~VtFgy~--------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr-----  649 (807)
T KOG0066|consen  583 NPPVLGLHDVTFGYP--------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR-----  649 (807)
T ss_pred             CCCeeecccccccCC--------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce-----
Confidence            457899999999997        5689999999999999999999999999999999999999998886432211     


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCcc--ccccchHHHHHhccCCCCHHHHHHHHHHcCCCc---CccCCCCCHHHHHH
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVP--IQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDL---SWRMHKVSDGQRRR  181 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~LSgGqrQR  181 (348)
                                       -.++|..+...  +...-+.-+++......+...+...+-.+|+..   .-.+..|||||+-|
T Consensus       650 -----------------L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaR  712 (807)
T KOG0066|consen  650 -----------------LRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKAR  712 (807)
T ss_pred             -----------------eeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHH
Confidence                             11222222111  111122223332223345566677788888863   23678999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee-ecChhH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL-AMPMDK  260 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~  260 (348)
                      |++|-.-+..|+||||||||++||.++...+.+.|.++    ...||+||||-.++......++|+.+..|-+ +|..++
T Consensus       713 ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD  788 (807)
T KOG0066|consen  713 VALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED  788 (807)
T ss_pred             HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence            99999999999999999999999999999999998765    5589999999999988878889888766543 355555


Q ss_pred             HH
Q 018938          261 VK  262 (348)
Q Consensus       261 ~~  262 (348)
                      +.
T Consensus       789 Yk  790 (807)
T KOG0066|consen  789 YK  790 (807)
T ss_pred             HH
Confidence            44

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2.7e-28  Score=235.06  Aligned_cols=197  Identities=22%  Similarity=0.285  Sum_probs=155.0

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      ..|.|++.+|+|.|.+       +..+.+.++++.++.-+.++++|+||+||||++|++.|-..|..|.+.+.+..    
T Consensus       359 ~~p~l~i~~V~f~y~p-------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~----  427 (582)
T KOG0062|consen  359 SPPNLRISYVAFEYTP-------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRL----  427 (582)
T ss_pred             CCCeeEEEeeeccCCC-------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccc----
Confidence            3578999999999964       23379999999999999999999999999999999999888888876554421    


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHHcCCCc---CccCCCCCHHHHHHH
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKVLDIDL---SWRMHKVSDGQRRRV  182 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~LSgGqrQRv  182 (348)
                             .+.+.   .+..+.+.      ......-.+ ....++..++...+-+..+|++.   .+.+..||||||-||
T Consensus       428 -------ri~~f---~Qhhvd~l------~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrv  491 (582)
T KOG0062|consen  428 -------RIKYF---AQHHVDFL------DKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRV  491 (582)
T ss_pred             -------eecch---hHhhhhHH------HHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHH
Confidence                   12211   11111111      011111111 12234556777888899999862   456889999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ++|.+...+|.+|+||||||+||.++...+...|+.+    +..||+||||.+++..+|+.+|+.++|++..
T Consensus       492 afA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  492 AFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             HHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            9999999999999999999999999999988888754    5689999999999999999999999999975

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.95  E-value=4.3e-28  Score=216.57  Aligned_cols=166  Identities=19%  Similarity=0.157  Sum_probs=111.7

Q ss_pred             eeeEEeCCCEEEEECCCCCcHHHHHHHHh----CCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938           58 FTLTLNAGDRCLLVGSNGAGKTTILKIIG----GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV  133 (348)
Q Consensus        58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~----Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (348)
                      .++++.+| +++|+||||||||||+++|.    |...|..|.+..+...+....      .        ...+.+..+..
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~------~--------~~~v~~~f~~~   80 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGE------V--------RAQVKLAFENA   80 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCC------C--------cEEEEEEEEeC
Confidence            34566677 99999999999999999994    887776665431111111000      0        00111111111


Q ss_pred             -----cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHH------HHHHHHHccCCcEEEeeccCC
Q 018938          134 -----PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRR------VQICMGLLKPFKVLLLDEITV  202 (348)
Q Consensus       134 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQR------v~lAraL~~~P~lLlLDEPts  202 (348)
                           .....++..+.+...   ......+.+       ++.+.+||+||+||      ++||||++.+|+++||||||+
T Consensus        81 ~~~~~~v~r~~~~~~~~~~~---~~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~  150 (204)
T cd03240          81 NGKKYTITRSLAILENVIFC---HQGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT  150 (204)
T ss_pred             CCCEEEEEEEhhHhhceeee---chHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence                 011111221111110   112222222       56789999999996      789999999999999999999


Q ss_pred             CCCHHHHH-HHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          203 DLDVLARA-DLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       203 gLD~~~~~-~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      +||+..+. .+.++|.++.++.+.|||++||+++.+. .||+++.|.+
T Consensus       151 ~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~  197 (204)
T cd03240         151 NLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEK  197 (204)
T ss_pred             ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEee
Confidence            99999999 9999999986554889999999999875 6999999864

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.95  E-value=9.4e-28  Score=228.33  Aligned_cols=184  Identities=22%  Similarity=0.281  Sum_probs=136.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +++-.+++|.|++          ..|+-=.=+|..||+++++||||-|||||.++|+|.++|++|. ..+=         
T Consensus       342 lv~y~~~~k~~g~----------F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~---------  401 (591)
T COG1245         342 LVEYPDLKKTYGD----------FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDL---------  401 (591)
T ss_pred             eeecchheeecCc----------eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Cccc---------
Confidence            4555566666631          2333334456678999999999999999999999999999986 1100         


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCC--C-CHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG--I-DPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQI  184 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l  184 (348)
                          .++           |-+|........++++++.....  + +.....++++-|.++  .++++.+|||||.|||+|
T Consensus       402 ----~vS-----------yKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaI  466 (591)
T COG1245         402 ----KVS-----------YKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAI  466 (591)
T ss_pred             ----eEe-----------ecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHH
Confidence                111           11111111122334443322110  1 122334566667665  478899999999999999


Q ss_pred             HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      |.||..++++.|||||++.||.+.|-.+...|+++..+.++|.++|.||+..+..++||++++.
T Consensus       467 aa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         467 AAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             HHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence            9999999999999999999999999999999999999999999999999999999999999986

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.95  E-value=6.8e-27  Score=256.60  Aligned_cols=104  Identities=20%  Similarity=0.296  Sum_probs=94.6

Q ss_pred             HHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHc---cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 018938          158 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLL---KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  231 (348)
Q Consensus       158 ~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~---~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivt  231 (348)
                      ++++.+++.   .++++.+|||||+|||+||+||+   .+|++|||||||+|||+..+..++++|+++++ .|.|||+||
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIs  869 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIE  869 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence            466777875   36788999999999999999997   69999999999999999999999999999874 599999999


Q ss_pred             cChhhhhhhCCEEEEEc------CCEEeeecChhHHHH
Q 018938          232 HIFDGLENWPSHIVYVA------HGKLQLAMPMDKVKE  263 (348)
Q Consensus       232 Hd~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~  263 (348)
                      |+++++ .+||++++|.      +|++++.|+++++..
T Consensus       870 Hdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        870 HNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             CCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            999999 7999999996      799999999999875

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=5.7e-28  Score=222.53  Aligned_cols=179  Identities=16%  Similarity=0.224  Sum_probs=114.1

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCC-CceEEEcCe-eccccccc--cccCcccccchhhhhhhhhcCCCccccccch
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKHMVE-PEMVKVLGR-SAFHDTAL--TSSGDLSYLGGEWRREVAFAGFEVPIQMDVS  140 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-~G~i~i~G~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (348)
                      ..+++|+||||||||||+++|++++.+. .|++.+.|. ++......  .....+....+.....  ..+......+.++
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~--~~~~~~~~~~~lt  102 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKS--QSPIGFENYPEIT  102 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcc--cCcccccCCceEE
Confidence            4599999999999999999999998765 356766654 22111000  0000111111100000  0000000000011


Q ss_pred             HHH-------HHhccC--CCCHHHHHHHHHHcCCCc----------------------CccCCCCCHHHHHHHHHHHHHc
Q 018938          141 AEK-------MIFGVA--GIDPQRRAELIKVLDIDL----------------------SWRMHKVSDGQRRRVQICMGLL  189 (348)
Q Consensus       141 ~~~-------~~~~~~--~~~~~~~~~~l~~l~l~~----------------------~~~~~~LSgGqrQRv~lAraL~  189 (348)
                      +..       ..+...  ....+++.++++.+++..                      +.++.+||+|||||++||+||+
T Consensus       103 V~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~  182 (251)
T cd03273         103 VTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA  182 (251)
T ss_pred             EEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence            000       000011  112355667788887752                      2568899999999999999998


Q ss_pred             ----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          190 ----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       190 ----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                          .+|+++||||||++||+..+..+++.|+++.  .|.|||++||+.+ +...||+++-+.
T Consensus       183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~~-~~~~~d~v~~~~  242 (251)
T cd03273         183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKEG-MFNNANVLFRTR  242 (251)
T ss_pred             HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCHH-HHHhCCEEEEEE
Confidence                5789999999999999999999999999974  3889999999955 445799998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.95  E-value=7.7e-27  Score=246.08  Aligned_cols=104  Identities=20%  Similarity=0.303  Sum_probs=92.5

Q ss_pred             HHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHcc---CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEE
Q 018938          156 RAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLK---PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY  229 (348)
Q Consensus       156 ~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~---~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvii  229 (348)
                      ..++++.+++.   .++++.+|||||+||+.||++|+.   +|+++||||||+|||+..+..++++|+++.+ .|.|||+
T Consensus       808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIv  886 (924)
T TIGR00630       808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVV  886 (924)
T ss_pred             HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEE
Confidence            34566777775   367889999999999999999997   5999999999999999999999999999864 5999999


Q ss_pred             EecChhhhhhhCCEEEEE------cCCEEeeecChhHH
Q 018938          230 ATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKV  261 (348)
Q Consensus       230 vtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~  261 (348)
                      +||+++++. .||++++|      ++|++++.|+++++
T Consensus       887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       887 IEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             EeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            999999985 69999999      79999999988764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=2.5e-27  Score=217.72  Aligned_cols=178  Identities=12%  Similarity=0.149  Sum_probs=113.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee-cc-ccccccccCcccccchhhhhhhhhcCCCccc--ccc
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS-AF-HDTALTSSGDLSYLGGEWRREVAFAGFEVPI--QMD  138 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  138 (348)
                      .++ +++|+||||||||||+.+|++++.++.|++...+.. .. .+........-..      -.+.|..+....  ...
T Consensus        21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~------v~~~f~~~~~~~~~~~~   93 (247)
T cd03275          21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY------VTAVYEDDDGEEKTFRR   93 (247)
T ss_pred             CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE------EEEEEEcCCCcEEEEEE
Confidence            344 999999999999999999999887766665543311 00 0000000000000      011111111000  000


Q ss_pred             -chHHHHHhccC--CCCHHHHHHHHHHcCCCc------------------------CccCCCCCHHHHHHHHHHHHHccC
Q 018938          139 -VSAEKMIFGVA--GIDPQRRAELIKVLDIDL------------------------SWRMHKVSDGQRRRVQICMGLLKP  191 (348)
Q Consensus       139 -~~~~~~~~~~~--~~~~~~~~~~l~~l~l~~------------------------~~~~~~LSgGqrQRv~lAraL~~~  191 (348)
                       .......+...  ........++++.+++..                        ..++.+||+|||||++||+|++.+
T Consensus        94 ~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~  173 (247)
T cd03275          94 IITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH  173 (247)
T ss_pred             EEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence             00000000111  123344556666666631                        123488999999999999999864


Q ss_pred             ----CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          192 ----FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       192 ----P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                          |+++||||||++||+..+..+.++|++++++ |.+||+|||+.+.+ .+||++++|..
T Consensus       174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~-~~~d~i~~~~~  233 (247)
T cd03275         174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFF-SKADALVGVYR  233 (247)
T ss_pred             ccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHH-hhCCeEEEEEe
Confidence                8999999999999999999999999998644 89999999997766 68999998864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.94  E-value=1.7e-26  Score=230.36  Aligned_cols=187  Identities=20%  Similarity=0.300  Sum_probs=139.8

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      +..|+++||+..-+.        +...++++||+|++||.+.|.||||||||||+|+|+|+-+.-+|+|.+-..      
T Consensus       390 ~~~i~~~nl~l~~p~--------~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~------  455 (604)
T COG4178         390 DHGITLENLSLRTPD--------GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD------  455 (604)
T ss_pred             cceeEEeeeeEECCC--------CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC------
Confidence            467999999999863        468999999999999999999999999999999999998766666543210      


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccC--CCCHHHHHHHHHHcCCCc--------CccCCCCCHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA--GIDPQRRAELIKVLDIDL--------SWRMHKVSDG  177 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~l~~--------~~~~~~LSgG  177 (348)
                                      ....|.+|.+.+......+.+.+...  ..+.+...++|..++|+.        ++--..||+|
T Consensus       456 ----------------~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~G  519 (604)
T COG4178         456 ----------------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGG  519 (604)
T ss_pred             ----------------CceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChh
Confidence                            11223333333322221222323221  245667778888888741        1223679999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ||||+++||.|+++|++++|||.|++||+.+...+++++++-+  .+.|||-|+|..... .+.++.+.+
T Consensus       520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~-~~h~~~l~l  586 (604)
T COG4178         520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPTLW-NFHSRQLEL  586 (604)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchhhH-HHHhhheee
Confidence            9999999999999999999999999999999999999998743  489999999996654 455655544

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=5.7e-27  Score=208.35  Aligned_cols=174  Identities=17%  Similarity=0.206  Sum_probs=114.3

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE--cCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV--LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      .++++++++.+| +.+|+||||||||||+.+|....   .|....  .|....   .+...+.      . ...+.+...
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l---~~~~~~~~r~~~~~---~~i~~~~------~-~~~i~~~~~   76 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL---GGKASDTNRGSSLK---DLIKDGE------S-SAKITVTLK   76 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh---cCCcccccccccHH---HHhhCCC------C-eEEEEEEEE
Confidence            457788898888 88999999999999999987422   222110  011000   0000000      0 000111000


Q ss_pred             CccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH----ccCCcEEEeeccCCCCCHH
Q 018938          132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVL  207 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL----~~~P~lLlLDEPtsgLD~~  207 (348)
                      ......        ..........+.++++. .-..++++.+||+|||||++||+||    +.+|+++||||||++||+.
T Consensus        77 ~~~~~~--------~~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~  147 (198)
T cd03276          77 NQGLDA--------NPLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV  147 (198)
T ss_pred             cCCccC--------CcCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence            000000        00111122344555555 2224678899999999999999999    6899999999999999999


Q ss_pred             HHHHHHHHHHHHHHh--cCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          208 ARADLLRFLRKECEE--RGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       208 ~~~~l~~~l~~l~~~--~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      .+..+.++|.+++++  .+.|||++||+++++..+ |+|.+|..++
T Consensus       148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence            999999999998654  246899999999999886 9999998653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.94  E-value=2.6e-26  Score=221.28  Aligned_cols=219  Identities=17%  Similarity=0.300  Sum_probs=167.1

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc-c
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF-H  105 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~-~  105 (348)
                      ..+.|++++|+..-.        .+...+++|||+|.+||++||.|-.|-|-+.|+.+|+|+.++.+|+|.++|+++. .
T Consensus       254 g~~vL~V~~L~v~~~--------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~  325 (501)
T COG3845         254 GEVVLEVEDLSVKDR--------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR  325 (501)
T ss_pred             CCeEEEEeeeEeecC--------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEecccc
Confidence            457899999998753        2357899999999999999999999999999999999999889999999998751 1


Q ss_pred             ccc-ccccCcccccchhhhhhhhhcCCCccccccchH-HHHHhcc--------CC-CCH----HHHHHHHHHcCCC---c
Q 018938          106 DTA-LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA-EKMIFGV--------AG-IDP----QRRAELIKVLDID---L  167 (348)
Q Consensus       106 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~-~~~----~~~~~~l~~l~l~---~  167 (348)
                      ... ......+++++.+..+. +.+       ..++. ++.....        .+ .+.    ....++++.+++.   .
T Consensus       326 ~~~~~~r~~G~~~VPedR~~~-Glv-------~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~  397 (501)
T COG3845         326 LSPRERRRLGLAYVPEDRHGH-GLV-------LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP  397 (501)
T ss_pred             CCHHHHHhcCCccCChhhccC-ccc-------cCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC
Confidence            010 00111233333221111 111       11222 2222111        11 222    2345778888874   3


Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ..+..+||||.+||+-+||-|..+|++||+.+||-|||..+.+.+.+.|.+.. +.|++|+++|-|++++..+||||++|
T Consensus       398 ~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r-~~G~AVLLiS~dLDEil~lsDrIaVi  476 (501)
T COG3845         398 DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR-DAGKAVLLISEDLDEILELSDRIAVI  476 (501)
T ss_pred             CcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH-hcCCEEEEEehhHHHHHHhhheeeee
Confidence            45689999999999999999999999999999999999999999999999986 56999999999999999999999999


Q ss_pred             cCCEEeeecChhHHH
Q 018938          248 AHGKLQLAMPMDKVK  262 (348)
Q Consensus       248 ~~G~i~~~g~~~~~~  262 (348)
                      .+|+++...++++..
T Consensus       477 ~~Gri~~~~~~~~~t  491 (501)
T COG3845         477 YEGRIVGIVPPEEAT  491 (501)
T ss_pred             eCCceecccccccCC
Confidence            999999988877643

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.92  E-value=1.9e-25  Score=198.91  Aligned_cols=145  Identities=23%  Similarity=0.302  Sum_probs=106.9

Q ss_pred             eeeeeeEEeCCC-EEEEECCCCCcHHHHHHHHh--------CCCcCCCceEEEcCeeccccccccccCcccccchhhhhh
Q 018938           55 INDFTLTLNAGD-RCLLVGSNGAGKTTILKIIG--------GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRRE  125 (348)
Q Consensus        55 l~~vsl~i~~Ge-~~~liG~NGsGKSTLlk~i~--------Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~  125 (348)
                      +-++||++.+|+ +++|+||||||||||+|+|+        |...|....+                            .
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------------------------~   68 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------------------------S   68 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------------------------c
Confidence            457899999995 79999999999999999998        4332211000                            0


Q ss_pred             hhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCC
Q 018938          126 VAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD  205 (348)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD  205 (348)
                      +++..+..             ...+ ..+           .......++|+||+|++.|+++ +.+|+++|+||||+|||
T Consensus        69 ~~~~~~~~-------------~~lg-~~~-----------~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD  122 (200)
T cd03280          69 LPVFENIF-------------ADIG-DEQ-----------SIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTD  122 (200)
T ss_pred             CcCccEEE-------------EecC-chh-----------hhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCC
Confidence            00000000             0000 000           1234567899999999999988 48999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          206 VLARADLL-RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       206 ~~~~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      +..+..++ .+++++. +.+.++|++||+. ++..+||+++.|++|++..+
T Consensus       123 ~~~~~~i~~~~l~~l~-~~~~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~~  171 (200)
T cd03280         123 PVEGAALAIAILEELL-ERGALVIATTHYG-ELKAYAYKREGVENASMEFD  171 (200)
T ss_pred             HHHHHHHHHHHHHHHH-hcCCEEEEECCHH-HHHHHHhcCCCeEEEEEEEe
Confidence            99999996 4677765 4589999999995 56689999999999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=2.3e-25  Score=234.55  Aligned_cols=196  Identities=23%  Similarity=0.355  Sum_probs=153.8

Q ss_pred             CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc--CCCceEEEcCeeccccccccccCcccccchhhhhhhh
Q 018938           50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM--VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA  127 (348)
Q Consensus        50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~--~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (348)
                      +.+.+|+||+=-+.||-.+||+|+|||||||||++|+|-..  ...|.|.|+|.+..+              ..+++.++
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--------------~tF~R~~G  867 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--------------ETFARVSG  867 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--------------hhhccccc
Confidence            46789999999999999999999999999999999999321  124577888865321              23567788


Q ss_pred             hcCCCccccccchHHHHH-h----ccC-CCCH----HHHHHHHHHcCCC--cCccC----CCCCHHHHHHHHHHHHHccC
Q 018938          128 FAGFEVPIQMDVSAEKMI-F----GVA-GIDP----QRRAELIKVLDID--LSWRM----HKVSDGQRRRVQICMGLLKP  191 (348)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~-~----~~~-~~~~----~~~~~~l~~l~l~--~~~~~----~~LSgGqrQRv~lAraL~~~  191 (348)
                      |+.|+......++++|-+ +    ..+ ..+.    +.++++++.++++  .+.-+    ..||..||+|+.||--|+.+
T Consensus       868 YvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~  947 (1391)
T KOG0065|consen  868 YVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVAN  947 (1391)
T ss_pred             eeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecC
Confidence            886666555667776532 1    111 2222    3467889999986  23333    45999999999999999999


Q ss_pred             C-cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh-hhhhCCEEEEEcC-CEEeeecChhH
Q 018938          192 F-KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG-LENWPSHIVYVAH-GKLQLAMPMDK  260 (348)
Q Consensus       192 P-~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~~  260 (348)
                      | .||+|||||||||..+...+++++++++. .|.|||++-|.+.- +.+-.|++++|+. |+.++.|+..+
T Consensus       948 P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen  948 PSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred             CceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence            9 99999999999999999999999999986 69999999999873 4455799999975 78999888754

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1.4e-24  Score=205.60  Aligned_cols=216  Identities=24%  Similarity=0.236  Sum_probs=145.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCeecccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~~~~~~  106 (348)
                      .-|.++|.+.+-.         ++..+.+.||.|-.|..+||+||||-||||||+.|+.-  -.|..=.+.++.+.+...
T Consensus       263 ~DIKiEnF~ISA~---------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad  333 (807)
T KOG0066|consen  263 MDIKIENFDISAQ---------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVAD  333 (807)
T ss_pred             ccceeeeeeeecc---------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeec
Confidence            4589999998874         36789999999999999999999999999999999762  112222333333322111


Q ss_pred             ccccccCccc-ccchhhhhhhhhcCCC-----ccccccchHH--------HHHhccCCCCHHHHHHHHHHcCCCc---Cc
Q 018938          107 TALTSSGDLS-YLGGEWRREVAFAGFE-----VPIQMDVSAE--------KMIFGVAGIDPQRRAELIKVLDIDL---SW  169 (348)
Q Consensus       107 ~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~l~l~~---~~  169 (348)
                      ..    .-+. .+..+. ++..+....     .......++.        ++...-......++..++.-+|+..   ++
T Consensus       334 ~t----~Ai~tvl~aD~-kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~r  408 (807)
T KOG0066|consen  334 ST----SAIDTVLKADK-KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQER  408 (807)
T ss_pred             Cc----HHHHHHHHhhH-HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence            00    0000 000000 111110000     0001111111        1110001112345667888888762   56


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      +...+|||+|.||+|||||...|-+|.|||||++||.....++-++|+-|    .+|++|||||..|+..+|+.|+.|++
T Consensus       409 Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~  484 (807)
T KOG0066|consen  409 PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDN  484 (807)
T ss_pred             CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhh
Confidence            67889999999999999999999999999999999999988888888765    46999999999999999999999999


Q ss_pred             CEEeee-cChhHHH
Q 018938          250 GKLQLA-MPMDKVK  262 (348)
Q Consensus       250 G~i~~~-g~~~~~~  262 (348)
                      -++.+. |+...+.
T Consensus       485 qkLhyYrGNY~~FK  498 (807)
T KOG0066|consen  485 QKLHYYRGNYTLFK  498 (807)
T ss_pred             hhhhhhcchHHHHH
Confidence            998654 6655443

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.91  E-value=6.3e-24  Score=190.80  Aligned_cols=84  Identities=19%  Similarity=0.224  Sum_probs=72.8

Q ss_pred             CccCCCCCHHHHHHHHHHHHH----ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcC-cEEEEEecChhhhhhhCC
Q 018938          168 SWRMHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG-ATIIYATHIFDGLENWPS  242 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL----~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g-~tviivtHd~~~~~~~~d  242 (348)
                      ...+.+||+||||++.+|++|    +.+|+++|+||||++||+..+..+++.|.++.++.| .|+|++||++..+..+||
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~  200 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE  200 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence            446789999999999877554    589999999999999999999999999999865434 589999999988888887


Q ss_pred             --EEEEEcCCE
Q 018938          243 --HIVYVAHGK  251 (348)
Q Consensus       243 --~v~~l~~G~  251 (348)
                        +|++|++|+
T Consensus       201 ~~~v~~l~~g~  211 (213)
T cd03277         201 KMTVLCVYNGP  211 (213)
T ss_pred             ceEEEEEecCc
Confidence              788888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.90  E-value=2.2e-23  Score=198.68  Aligned_cols=176  Identities=22%  Similarity=0.334  Sum_probs=123.4

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhh-hc---------CC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA-FA---------GF  131 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~  131 (348)
                      ..+|.++||+|+||-||||-+|+|+|.+.|.=|.-  ++.+-|... +.     .+-+.+++..+. ..         +|
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeV-i~-----~FrGtELq~YF~~l~~g~~r~v~K~Q  168 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEV-IK-----RFRGTELQNYFKKLYEGELRAVHKPQ  168 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHH-HH-----HhhhhHHHHHHHHHHcCCcceecchH
Confidence            46899999999999999999999999998887641  121111100 00     000111111100 00         00


Q ss_pred             Ccccc---ccchHHHHHhccCCCC-HHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCC
Q 018938          132 EVPIQ---MDVSAEKMIFGVAGID-PQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD  205 (348)
Q Consensus       132 ~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD  205 (348)
                      .+...   ..-++.+++-   ..+ .-..+++.+.+++.  .++.+++|||||-||++||.|++++.+++++|||||-||
T Consensus       169 YVd~iPk~~KG~v~elLk---~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLD  245 (591)
T COG1245         169 YVDLIPKVVKGKVGELLK---KVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD  245 (591)
T ss_pred             HHHHHHHHhcchHHHHHH---hhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccccc
Confidence            00000   0000111110   111 12356788888886  588899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          206 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       206 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ...|-...+.++++++. +++||+|.||+..+..++|-|.++..
T Consensus       246 i~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~YG  288 (591)
T COG1245         246 IRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILYG  288 (591)
T ss_pred             HHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEec
Confidence            99999999999999865 89999999999999999999998874

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.89  E-value=1.7e-22  Score=197.44  Aligned_cols=191  Identities=19%  Similarity=0.298  Sum_probs=134.9

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      +.+|++++|+..=+.       .+..+++|+||+|++|.-+.|+||||||||+|+|+++|+-+...|.+..-...-.   
T Consensus       431 Dn~i~~e~v~l~tPt-------~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---  500 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPT-------NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---  500 (659)
T ss_pred             cceEEeeeeeecCCC-------CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC---
Confidence            468999999998764       2467889999999999999999999999999999999997768888764322100   


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc-------CCCCHHHHHHHHHHcCC----------C--cC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-------AGIDPQRRAELIKVLDI----------D--LS  168 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~l~l----------~--~~  168 (348)
                           .+           +-|++|.+........+++++..       ...+.+++.+.++.+++          +  .+
T Consensus       501 -----~~-----------lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~  564 (659)
T KOG0060|consen  501 -----KD-----------LFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVD  564 (659)
T ss_pred             -----Cc-----------eEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhh
Confidence                 01           11222221111111111222111       11233445555554433          2  11


Q ss_pred             -ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          169 -WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       169 -~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                       .....||+||+||+++||.+.++|++-||||-||++|.+....+.+.++    +.|+|.|-|+|..... ++=|.++-|
T Consensus       565 ~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r----~~giT~iSVgHRkSL~-kfHd~~L~~  639 (659)
T KOG0060|consen  565 WDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR----EMGITFISVGHRKSLW-KFHDYVLRM  639 (659)
T ss_pred             ccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH----HcCCeEEEeccHHHHH-hhhhEEEEe
Confidence             1246899999999999999999999999999999999988777777665    5699999999998866 467888888


Q ss_pred             cC
Q 018938          248 AH  249 (348)
Q Consensus       248 ~~  249 (348)
                      +.
T Consensus       640 ~g  641 (659)
T KOG0060|consen  640 DG  641 (659)
T ss_pred             cC
Confidence            65

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.89  E-value=2.4e-22  Score=189.61  Aligned_cols=179  Identities=26%  Similarity=0.382  Sum_probs=137.0

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--------CcCCCceEEEcCeeccccccccccCcccccchhh
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--------HMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW  122 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--------~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~  122 (348)
                      ...+++|+||++++|++++|+|+|||||||+|++|+|.        ++|++|.|.+--..+            +      
T Consensus       395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~------------~------  456 (593)
T COG2401         395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV------------S------  456 (593)
T ss_pred             eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch------------h------
Confidence            45689999999999999999999999999999999984        457777665421110            0      


Q ss_pred             hhhhhhcCC--CccccccchHHHHHhccCCCCHHHHHHHHHHcCCC----cCccCCCCCHHHHHHHHHHHHHccCCcEEE
Q 018938          123 RREVAFAGF--EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLL  196 (348)
Q Consensus       123 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~LSgGqrQRv~lAraL~~~P~lLl  196 (348)
                          ++.+-  ++.+. ..+..+.+....+ +...+.+++...|+.    ..+++++||-|||.|+.||++++..|.+++
T Consensus       457 ----a~iPge~Ep~f~-~~tilehl~s~tG-D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~  530 (593)
T COG2401         457 ----ALIPGEYEPEFG-EVTILEHLRSKTG-DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLL  530 (593)
T ss_pred             ----hccCcccccccC-chhHHHHHhhccC-chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEE
Confidence                01110  11111 1122222221111 334466788888875    235689999999999999999999999999


Q ss_pred             eeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEEEEcCCEEe
Q 018938          197 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKLQ  253 (348)
Q Consensus       197 LDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~~l~~G~i~  253 (348)
                      .||-.|+||+.+...+..-|.+++++.|.|++++||..+...++ -|.++.+.-|+..
T Consensus       531 iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         531 IDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             hhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence            99999999999999999999999999999999999999999998 7888888766653

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.88  E-value=2.8e-22  Score=175.24  Aligned_cols=74  Identities=20%  Similarity=0.277  Sum_probs=68.2

Q ss_pred             CCHHHHHHHHHHHHHc----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          174 VSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       174 LSgGqrQRv~lAraL~----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ||+||+||++|||+|+    .+|+++|+|||+++||+..+..+.+.|.++.+. |.|+|++||+.+.+. .||+++.+..
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~-~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFE-NADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCeEEEEEE
Confidence            9999999999999996    699999999999999999999999999998654 799999999998775 7999999864

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.87  E-value=4.9e-22  Score=171.13  Aligned_cols=75  Identities=23%  Similarity=0.324  Sum_probs=68.8

Q ss_pred             CCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          173 KVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       173 ~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +||+||+||++||++|+.    +|+++|+|||++|+|+..+..+.+.+.++.++ +.++|++||+.+.+. .+|+++.|.
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l~  154 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-LADKLIHIK  154 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEEE
Confidence            399999999999999986    78999999999999999999999999998766 889999999999886 589999885


Q ss_pred             C
Q 018938          249 H  249 (348)
Q Consensus       249 ~  249 (348)
                      .
T Consensus       155 ~  155 (162)
T cd03227         155 K  155 (162)
T ss_pred             E
Confidence            3

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.87  E-value=6.2e-22  Score=178.95  Aligned_cols=153  Identities=18%  Similarity=0.193  Sum_probs=110.7

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhh-hcC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA-FAG  130 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  130 (348)
                      ..+.+|++|++.+|++++|+||||+|||||+++|+=. .                               +...++ +++
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~-------------------------------~la~~g~~vp   64 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-V-------------------------------LMAQIGCFVP   64 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-H-------------------------------HHHHhCCCcC
Confidence            5689999999999999999999999999999998721 0                               001111 111


Q ss_pred             CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH--ccCCcEEEeecc---CCCCC
Q 018938          131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL--LKPFKVLLLDEI---TVDLD  205 (348)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL--~~~P~lLlLDEP---tsgLD  205 (348)
                      ...   ..+.              ..++++..+++. +.....+|.|++|++.+++++  +.+|+++|||||   |++||
T Consensus        65 a~~---~~~~--------------~~~~il~~~~l~-d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD  126 (222)
T cd03285          65 CDS---ADIP--------------IVDCILARVGAS-DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD  126 (222)
T ss_pred             ccc---EEEe--------------ccceeEeeeccc-cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence            100   0000              012233334433 223578999999999999999  899999999999   99999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          206 VLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       206 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      +.+....  .++.+.++.|.++|++||+ .++..+||++..+.+|++.....
T Consensus       127 ~~~~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         127 GFGLAWA--IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             HHHHHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence            9888543  3344444458899999996 77788999999999999977654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.86  E-value=4.2e-21  Score=179.23  Aligned_cols=78  Identities=14%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             CCCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          172 HKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ..|||||+||++||++++.    +|+++||||||++||+..+..+.+.|.++.+  +.|+|++||++..+ .+||++++|
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~-~~~d~~~~l  245 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVA-AMADNHFLV  245 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHH-HhcCcEEEE
Confidence            3599999999999997654    9999999999999999999999999998753  78999999999865 689999999


Q ss_pred             cCCEE
Q 018938          248 AHGKL  252 (348)
Q Consensus       248 ~~G~i  252 (348)
                      .+|..
T Consensus       246 ~~~~~  250 (276)
T cd03241         246 EKEVE  250 (276)
T ss_pred             EEecC
Confidence            88643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.86  E-value=1.3e-20  Score=207.61  Aligned_cols=105  Identities=23%  Similarity=0.314  Sum_probs=93.6

Q ss_pred             HHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccC---CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 018938          158 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKP---FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  231 (348)
Q Consensus       158 ~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~---P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivt  231 (348)
                      +.+..+||.   +.++..+|||||.||+-||.-|..+   +.++||||||.||++.....+++.|+++. +.|.|||+|.
T Consensus      1681 ~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~-~~g~tvivie 1759 (1809)
T PRK00635       1681 QALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLV-SLGHSVIYID 1759 (1809)
T ss_pred             HHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHH-hcCCeEEEEe
Confidence            455566765   5788899999999999999999865   79999999999999999999999999997 5699999999


Q ss_pred             cChhhhhhhCCEEEEEc------CCEEeeecChhHHHHh
Q 018938          232 HIFDGLENWPSHIVYVA------HGKLQLAMPMDKVKEA  264 (348)
Q Consensus       232 Hd~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~  264 (348)
                      ||++.+.. ||+|+-|-      .|+|++.|+|+++...
T Consensus      1760 H~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635       1760 HDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred             CCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence            99999986 99999985      4799999999999764

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.85  E-value=2.4e-21  Score=172.74  Aligned_cols=155  Identities=17%  Similarity=0.227  Sum_probs=102.7

Q ss_pred             eeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-CCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938           56 NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP  134 (348)
Q Consensus        56 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (348)
                      -..|+++.+|++++|+||||||||||+|+|++... ...|..                     +.. ....+++..+   
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~---------------------~~~-~~~~i~~~dq---   74 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCF---------------------VPA-ESASIPLVDR---   74 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCC---------------------ccc-cccccCCcCE---
Confidence            44567777999999999999999999999995321 111110                     000 0001111000   


Q ss_pred             ccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH
Q 018938          135 IQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  214 (348)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~  214 (348)
                      ....         ... . +           ......+.+|.+++| +..+.+++.+|+++|+||||+|||+..+..+..
T Consensus        75 i~~~---------~~~-~-d-----------~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~  131 (202)
T cd03243          75 IFTR---------IGA-E-D-----------SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY  131 (202)
T ss_pred             EEEE---------ecC-c-c-----------cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence            0000         000 0 0           112334567777776 666678889999999999999999998888765


Q ss_pred             -HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          215 -FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       215 -~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                       +++.+. +.+.++|++||+.+++. .|+++..+..|++...+...+
T Consensus       132 ~ll~~l~-~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~  176 (202)
T cd03243         132 AVLEHLL-EKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG  176 (202)
T ss_pred             HHHHHHH-hcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence             455554 55899999999987766 688888899999887776433

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.84  E-value=1.9e-20  Score=181.18  Aligned_cols=189  Identities=18%  Similarity=0.323  Sum_probs=124.1

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |.++|+-.--+.        ...++..++|+|++|-.+.|+||||||||+|+|+|.|+.+...|...+--          
T Consensus       482 I~lenIpvItP~--------~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~----------  543 (728)
T KOG0064|consen  482 IILENIPVITPA--------GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR----------  543 (728)
T ss_pred             eEEecCceeccC--------cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC----------
Confidence            778888776653        45688999999999999999999999999999999999766555432210          


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC----------c-CccCCCCCHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID----------L-SWRMHKVSDGQR  179 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----------~-~~~~~~LSgGqr  179 (348)
                       ...+-|+++.  ..++......+.....+.+++.  ..+........++..+.++          . ...-..||||||
T Consensus       544 -~~~mFYIPQR--PYms~gtlRDQIIYPdS~e~~~--~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGek  618 (728)
T KOG0064|consen  544 -PNNIFYIPQR--PYMSGGTLRDQIIYPDSSEQMK--RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEK  618 (728)
T ss_pred             -CcceEeccCC--CccCcCcccceeecCCcHHHHH--hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHH
Confidence             0111122111  0011000000111111233332  1233444444555554432          1 011256999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ||+++||.+.++|+.-+|||.||+..+.....+++..+    ..|.+.|-|||...... +-.+++-.
T Consensus       619 QR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak----~~gi~llsithrpslwk-~h~~ll~~  681 (728)
T KOG0064|consen  619 QRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK----DAGISLLSITHRPSLWK-YHTHLLEF  681 (728)
T ss_pred             HHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHH----hcCceEEEeecCccHHH-HHHHHHhc
Confidence            99999999999999999999999999988777777665    56999999999998775 34454444

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.83  E-value=3e-19  Score=180.55  Aligned_cols=106  Identities=22%  Similarity=0.315  Sum_probs=92.9

Q ss_pred             HHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Q 018938          158 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYAT  231 (348)
Q Consensus       158 ~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivt  231 (348)
                      +.|..+||.   +.++..+|||||.|||-||.-|....   -+.||||||+||-..-.+.+++.|.++.. .|-|||+|.
T Consensus       804 qtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIE  882 (935)
T COG0178         804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIE  882 (935)
T ss_pred             HHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence            344445664   56788999999999999999999877   99999999999999999999999999975 699999999


Q ss_pred             cChhhhhhhCCEEEEEc------CCEEeeecChhHHHHhh
Q 018938          232 HIFDGLENWPSHIVYVA------HGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       232 Hd~~~~~~~~d~v~~l~------~G~i~~~g~~~~~~~~~  265 (348)
                      |+++.+. .||+|+-|-      .|+|++.|+|+++.+..
T Consensus       883 HNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~  921 (935)
T COG0178         883 HNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAKVK  921 (935)
T ss_pred             cccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHhCc
Confidence            9999885 699999883      58999999999998743

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.82  E-value=4.5e-20  Score=164.12  Aligned_cols=144  Identities=20%  Similarity=0.230  Sum_probs=86.8

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      ..+++|++|+.  |++++|+||||||||||+|+|+|....     ...|..+...                  ...++  
T Consensus        14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~~G~~v~a~------------------~~~~q--   66 (199)
T cd03283          14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL-----AQAGAPVCAS------------------SFELP--   66 (199)
T ss_pred             CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH-----HHcCCEEecC------------------ccCcc--
Confidence            35677776665  799999999999999999999985321     1123221100                  00111  


Q ss_pred             CccccccchHHH-HHhccCCC--CHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHH
Q 018938          132 EVPIQMDVSAEK-MIFGVAGI--DPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA  208 (348)
Q Consensus       132 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~  208 (348)
                      ....+..++..+ ...+....  ...+..++++.++.                        .+|+++|+||||+|+|+..
T Consensus        67 ~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~------------------------~~p~llllDEp~~glD~~~  122 (199)
T cd03283          67 PVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKK------------------------GEPVLFLLDEIFKGTNSRE  122 (199)
T ss_pred             cceEEEeccchhccccccChHHHHHHHHHHHHHhccC------------------------CCCeEEEEecccCCCCHHH
Confidence            011111122211 11111100  01122333333321                        5999999999999999999


Q ss_pred             HHHHH-HHHHHHHHhcCcEEEEEecChhhhhhh--CCEEEEE
Q 018938          209 RADLL-RFLRKECEERGATIIYATHIFDGLENW--PSHIVYV  247 (348)
Q Consensus       209 ~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~--~d~v~~l  247 (348)
                      +..+. .+++.+. +.+.|+|++||+++++..+  .++|-.+
T Consensus       123 ~~~l~~~ll~~l~-~~~~tiiivTH~~~~~~~~~~~~~v~~~  163 (199)
T cd03283         123 RQAASAAVLKFLK-NKNTIGIISTHDLELADLLDLDSAVRNY  163 (199)
T ss_pred             HHHHHHHHHHHHH-HCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence            98775 4677775 4589999999999998766  4455443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.82  E-value=9.9e-20  Score=162.42  Aligned_cols=142  Identities=18%  Similarity=0.181  Sum_probs=98.3

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG  130 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      +..+.+|++|++++|++++|+||||+||||++|+|+++...                                .++++. 
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--------------------------------a~~G~~-   61 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--------------------------------AQIGCF-   61 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--------------------------------HHcCCC-
Confidence            35789999999999999999999999999999999875210                                011110 


Q ss_pred             CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHH
Q 018938          131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA  208 (348)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~  208 (348)
                       -......++..              +.+...++..  ..+..+++|+|++|+ ..+.+++.+|+++|||||++|+|+..
T Consensus        62 -vpa~~~~l~~~--------------d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~  125 (204)
T cd03282          62 -VPAEYATLPIF--------------NRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD  125 (204)
T ss_pred             -cchhhcCccCh--------------hheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence             00000001110              1112222222  234567899999975 55566889999999999999999977


Q ss_pred             HHHH-HHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938          209 RADL-LRFLRKECEERGATIIYATHIFDGLENWPS  242 (348)
Q Consensus       209 ~~~l-~~~l~~l~~~~g~tviivtHd~~~~~~~~d  242 (348)
                      ...+ ...++.+. +.|.++|++||+.+++..+++
T Consensus       126 ~~~l~~~il~~l~-~~~~~~i~~TH~~~l~~~~~~  159 (204)
T cd03282         126 GFAISLAILECLI-KKESTVFFATHFRDIAAILGN  159 (204)
T ss_pred             HHHHHHHHHHHHH-hcCCEEEEECChHHHHHHhhc
Confidence            6665 45566665 459999999999999987664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.82  E-value=9.2e-20  Score=192.72  Aligned_cols=102  Identities=17%  Similarity=0.274  Sum_probs=92.0

Q ss_pred             HHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh
Q 018938          160 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  234 (348)
Q Consensus       160 l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~  234 (348)
                      +..+++.   +++.+.+|||||+|||.||++|+.+|  +++||||||+|||+..+..++++|+++.+ .|.|||+||||+
T Consensus       471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~  549 (924)
T TIGR00630       471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDE  549 (924)
T ss_pred             HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            4445654   46789999999999999999999986  89999999999999999999999999964 599999999999


Q ss_pred             hhhhhhCCEEEEE------cCCEEeeecChhHHHH
Q 018938          235 DGLENWPSHIVYV------AHGKLQLAMPMDKVKE  263 (348)
Q Consensus       235 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~  263 (348)
                      +++. +||+|++|      ++|+|++.|+++++..
T Consensus       550 ~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~  583 (924)
T TIGR00630       550 ETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILA  583 (924)
T ss_pred             HHHh-hCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence            9986 89999999      8999999999988754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.81  E-value=1.2e-19  Score=192.31  Aligned_cols=104  Identities=19%  Similarity=0.284  Sum_probs=93.4

Q ss_pred             HHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938          159 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  233 (348)
Q Consensus       159 ~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd  233 (348)
                      .++.+|+.   +++++.+|||||+|||+||++|+.+|  +++||||||+|||+..+..++++|+++. +.|.|||+||||
T Consensus       472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~-~~G~TVIvVeH~  550 (943)
T PRK00349        472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLR-DLGNTLIVVEHD  550 (943)
T ss_pred             HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHH-hCCCEEEEEeCC
Confidence            34556664   47789999999999999999999997  9999999999999999999999999996 469999999999


Q ss_pred             hhhhhhhCCEEEEE------cCCEEeeecChhHHHHh
Q 018938          234 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       234 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~  264 (348)
                      ++++. .||+|++|      ++|++++.|+++++...
T Consensus       551 ~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~  586 (943)
T PRK00349        551 EDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMKN  586 (943)
T ss_pred             HHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence            99986 69999999      99999999999988643

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=1.2e-19  Score=191.76  Aligned_cols=198  Identities=23%  Similarity=0.318  Sum_probs=152.2

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc---CCCceEEEcCeeccccccccccCcccccchhhhhhhhh
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM---VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF  128 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~---~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      ..+|+|+|.-+++|+.+.++||.||||||||++++|-+.   -.+|+|.++|.+......              ++.++|
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--------------~~~~aY  193 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--------------KKTVAY  193 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--------------CceEEe
Confidence            469999999999999999999999999999999999542   224578888875322111              233445


Q ss_pred             cCCCccccccchHHHHH---hccC-------CCCH-H----HHHHHHHHcCCCc-------CccCCCCCHHHHHHHHHHH
Q 018938          129 AGFEVPIQMDVSAEKMI---FGVA-------GIDP-Q----RRAELIKVLDIDL-------SWRMHKVSDGQRRRVQICM  186 (348)
Q Consensus       129 ~~~~~~~~~~~~~~~~~---~~~~-------~~~~-~----~~~~~l~~l~l~~-------~~~~~~LSgGqrQRv~lAr  186 (348)
                      .+++......+++.+.+   ....       ...+ +    ..+.+++.+|++.       +....-.|||||+||.+|-
T Consensus       194 ~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E  273 (1391)
T KOG0065|consen  194 NSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGE  273 (1391)
T ss_pred             ccccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeee
Confidence            55544444445444322   1111       1122 1    2346788899862       3446789999999999999


Q ss_pred             HHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh-hhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD-GLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       187 aL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      +++.+|+++.+||+|.|||..+.-++.+.|+++++..+.|++++-|... ++-.+.|.|++|.+|++++.|+.+++..
T Consensus       274 ~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~  351 (1391)
T KOG0065|consen  274 MLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP  351 (1391)
T ss_pred             eeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence            9999999999999999999999999999999999888899888887754 5667889999999999999999998764

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.78  E-value=1.8e-18  Score=160.95  Aligned_cols=77  Identities=26%  Similarity=0.353  Sum_probs=67.3

Q ss_pred             CCCCCHHHHHHHHHHHHHc---------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhC
Q 018938          171 MHKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  241 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~---------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~  241 (348)
                      ...||+||+|+++||++|+         .+|+++||||||++||+..+..+++.|.++    + .+++++|+.+.+..+|
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~  255 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDALW  255 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccchh
Confidence            3568999999999999985         799999999999999999999999999764    2 4677788878888888


Q ss_pred             ---CEEEEEcCCEE
Q 018938          242 ---SHIVYVAHGKL  252 (348)
Q Consensus       242 ---d~v~~l~~G~i  252 (348)
                         ++++.+++|++
T Consensus       256 ~~~~~i~~l~~g~i  269 (270)
T cd03242         256 LRRAQIFRVDAGTL  269 (270)
T ss_pred             ccCccEEEEeCcEE
Confidence               78999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.76  E-value=5e-18  Score=161.08  Aligned_cols=175  Identities=22%  Similarity=0.344  Sum_probs=124.8

Q ss_pred             CCCceeeeeeeEEeCCC-----EEEEECCCCCcHHHHHHHHhCCCcCCCce-EEEcCeeccccccccccCcccccchhhh
Q 018938           50 GSTPLINDFTLTLNAGD-----RCLLVGSNGAGKTTILKIIGGKHMVEPEM-VKVLGRSAFHDTALTSSGDLSYLGGEWR  123 (348)
Q Consensus        50 g~~~~l~~vsl~i~~Ge-----~~~liG~NGsGKSTLlk~i~Gl~~~~~G~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~  123 (348)
                      +.+.-+.++.|.|+.|+     ++..+|+||.|||||+++++|.++|+.|. +-...              +++-++.+ 
T Consensus       347 ~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln--------------VSykpqki-  411 (592)
T KOG0063|consen  347 KMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN--------------VSYKPQKI-  411 (592)
T ss_pred             cceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc--------------eecccccc-
Confidence            34567889999999885     68899999999999999999999888762 21111              11111111 


Q ss_pred             hhhhhcCCCccccccchHHHHHhc---cCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEee
Q 018938          124 REVAFAGFEVPIQMDVSAEKMIFG---VAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD  198 (348)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLD  198 (348)
                                ......++..++..   -......-+.++++-|.++  .++.+..|||||.|||+||.+|=..+++.+.|
T Consensus       412 ----------spK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliD  481 (592)
T KOG0063|consen  412 ----------SPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLID  481 (592)
T ss_pred             ----------CccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEec
Confidence                      00011111111110   0001222333444444443  35678899999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          199 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       199 EPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      ||.+-||.+.+..--..++++.-..++|-.+|.||+-.+..++||+++.+.
T Consensus       482 EpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  482 EPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             CchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence            999999999999888888887655688999999999999999999988753

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.71  E-value=6.7e-18  Score=148.55  Aligned_cols=83  Identities=17%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLENWPSHIVY  246 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~  246 (348)
                      ....++||+|++|...+++. +.+|+++|+|||++|+|+.....+. .+++.+.++.+.++|++||+.+ +..+|++.--
T Consensus        56 ~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~~~~  133 (185)
T smart00534       56 AQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADEHPG  133 (185)
T ss_pred             hccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhcCcc
Confidence            34567899998874444432 4599999999999999999877764 5566665434889999999996 5667875433


Q ss_pred             EcCCEE
Q 018938          247 VAHGKL  252 (348)
Q Consensus       247 l~~G~i  252 (348)
                      +.++.+
T Consensus       134 v~~~~~  139 (185)
T smart00534      134 VRNLHM  139 (185)
T ss_pred             ceEEEE
Confidence            444443

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.71  E-value=1.5e-17  Score=149.74  Aligned_cols=153  Identities=22%  Similarity=0.244  Sum_probs=94.5

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      ..+.+|++|+..+ ++++|+||||||||||+|+|++....  +.   .|..+.               . ....+++.. 
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp---------------~-~~~~i~~~~-   74 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP---------------A-SKAEIGVVD-   74 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec---------------c-ccceeccee-
Confidence            4588999999987 89999999999999999999874311  00   010000               0 000111110 


Q ss_pred             CccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHH----HHHHHHHH--ccCCcEEEeecc---CC
Q 018938          132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRR----RVQICMGL--LKPFKVLLLDEI---TV  202 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQ----Rv~lAraL--~~~P~lLlLDEP---ts  202 (348)
                        .++..+            .                 ...++|.|+.+    ++.|++++  +.+|+++|||||   |+
T Consensus        75 --~i~~~~------------~-----------------~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~  123 (216)
T cd03284          75 --RIFTRI------------G-----------------ASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTS  123 (216)
T ss_pred             --eEeccC------------C-----------------chhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence              000000            0                 01234444443    33455555  579999999999   99


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          203 DLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       203 gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      ++|....  ...+++.+.+..+.++|++||+.+ +..++|++..+.+|++......+++
T Consensus       124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~-l~~l~~~~~~v~~~~~~~~~~~~~l  179 (216)
T cd03284         124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYHE-LTELEGKLPRVKNFHVAVKEKGGGV  179 (216)
T ss_pred             hHHHHHH--HHHHHHHHHhccCCcEEEEeCcHH-HHHHhhcCCCeEEEEEEEEeeCCeE
Confidence            9998653  233444443333889999999975 5568898877888888776655544

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.67  E-value=5.2e-16  Score=143.79  Aligned_cols=143  Identities=17%  Similarity=0.112  Sum_probs=88.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI  145 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (348)
                      .-++|+||||||||||+++|+|++.|.+|++.++|+++.....          ..++...+.+.++. .....+      
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~----------~~ei~~~~~~~~q~-~~~~r~------  174 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDE----------RSEIAGCVNGVPQH-DVGIRT------  174 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchh----------HHHHHHHhcccccc-cccccc------
Confidence            5689999999999999999999999999999999986521000          00111111111110 000000      


Q ss_pred             hccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCc
Q 018938          146 FGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGA  225 (348)
Q Consensus       146 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~  225 (348)
                                                .-|.+=.|.....+.+++++|+++|+|||++      .+.+..+++.+ + .|.
T Consensus       175 --------------------------~v~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~-~G~  220 (270)
T TIGR02858       175 --------------------------DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H-AGV  220 (270)
T ss_pred             --------------------------cccccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h-CCC
Confidence                                      0000001111123333447999999999974      23445555554 3 499


Q ss_pred             EEEEEecChhh--h-----------hhhCCEEEEEcCCEEeeecChhHH
Q 018938          226 TIIYATHIFDG--L-----------ENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       226 tviivtHd~~~--~-----------~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      +||++||+.+.  +           ..+++|+++|++|+  ..|.++++
T Consensus       221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i  267 (270)
T TIGR02858       221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV  267 (270)
T ss_pred             EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence            99999997665  4           36789999999876  55665554

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.65  E-value=1.2e-15  Score=137.15  Aligned_cols=65  Identities=17%  Similarity=0.142  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHH-HHHHHHHHHHHh--cCcEEEEEecChhhhhhhC
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA-DLLRFLRKECEE--RGATIIYATHIFDGLENWP  241 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~-~l~~~l~~l~~~--~g~tviivtHd~~~~~~~~  241 (348)
                      -+.||+++|++++.+|.++|||||++|+|+.... .+..+++.+.+.  .+.++|++||+.+.+..+.
T Consensus        94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~  161 (213)
T cd03281          94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL  161 (213)
T ss_pred             HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence            5679999999999999999999999999997644 446788887643  1358999999999987653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=99.65  E-value=2.9e-16  Score=164.47  Aligned_cols=133  Identities=22%  Similarity=0.278  Sum_probs=92.1

Q ss_pred             eeeeEEeCC-CEEEEECCCCCcHHHHHHHHhCC-CcCCCce-EEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938           57 DFTLTLNAG-DRCLLVGSNGAGKTTILKIIGGK-HMVEPEM-VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV  133 (348)
Q Consensus        57 ~vsl~i~~G-e~~~liG~NGsGKSTLlk~i~Gl-~~~~~G~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (348)
                      .+|+++..+ ++++|+||||+|||||||+|+|. +.+..|. |...       .    .           ..+.+.    
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~-------~----~-----------~~~~~~----  366 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPAN-------E----H-----------SEIPYF----  366 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCC-------c----c-----------ccccch----
Confidence            479999888 89999999999999999999986 3333331 0000       0    0           000000    


Q ss_pred             cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHH
Q 018938          134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  213 (348)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~  213 (348)
                              ... +  ......  +.        ....+++||+||++++.|++++ .+|.++|||||++|+||.....+.
T Consensus       367 --------d~i-~--~~i~~~--~s--------i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala  424 (771)
T TIGR01069       367 --------EEI-F--ADIGDE--QS--------IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALA  424 (771)
T ss_pred             --------hhe-e--eecChH--hH--------HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHH
Confidence                    000 0  000100  11        1234678999999999999886 789999999999999999999994


Q ss_pred             -HHHHHHHHhcCcEEEEEecChhhhh
Q 018938          214 -RFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       214 -~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                       .++..+. +.|.++|++||+.++..
T Consensus       425 ~aiLe~l~-~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       425 ISILEYLL-KQNAQVLITTHYKELKA  449 (771)
T ss_pred             HHHHHHHH-hcCCEEEEECChHHHHH
Confidence             6666665 56899999999988643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.62  E-value=2.5e-15  Score=135.48  Aligned_cols=86  Identities=27%  Similarity=0.353  Sum_probs=61.7

Q ss_pred             HHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH----ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEE
Q 018938          155 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA  230 (348)
Q Consensus       155 ~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL----~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviiv  230 (348)
                      ...+.+....+..    ..||||||.+++||-.|    ..+.+++|||||.++||...+..+.++|+++.+  +.-+|++
T Consensus       122 ~~~~~l~~~~i~~----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~  195 (220)
T PF02463_consen  122 DLEELLPEVGISP----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIIT  195 (220)
T ss_dssp             HHHHHHHCTTTTT----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE
T ss_pred             ccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence            3444455444432    39999999999999765    357899999999999999999999999998743  4789999


Q ss_pred             ecChhhhhhhCCEEEEE
Q 018938          231 THIFDGLENWPSHIVYV  247 (348)
Q Consensus       231 tHd~~~~~~~~d~v~~l  247 (348)
                      ||+...+. .||+.+.+
T Consensus       196 Th~~~~~~-~a~~~~~v  211 (220)
T PF02463_consen  196 THNPEMFE-DADKLIGV  211 (220)
T ss_dssp             -S-HHHHT-T-SEEEEE
T ss_pred             cccccccc-cccccccc
Confidence            99977665 57887654

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.58  E-value=7.1e-15  Score=132.66  Aligned_cols=140  Identities=16%  Similarity=0.167  Sum_probs=87.0

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC-CCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG-KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG  130 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G-l~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      ..+..|++|++.+|++++|+||||+||||++++|++ .+.+..|.....-.           ..+.+..           
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~-----------~~~~~~~-----------   75 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASS-----------ATLSIFD-----------   75 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCc-----------eEEeccc-----------
Confidence            468899999999999999999999999999999999 45556654322110           0000000           


Q ss_pred             CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHH
Q 018938          131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA  210 (348)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~  210 (348)
                         .++..+         ...+  .           .....++++ .+-+++.-+.--+.+|.++|||||.+|.|+....
T Consensus        76 ---~i~~~~---------~~~d--~-----------~~~~~StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~  129 (222)
T cd03287          76 ---SVLTRM---------GASD--S-----------IQHGMSTFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGI  129 (222)
T ss_pred             ---eEEEEe---------cCcc--c-----------cccccchHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHH
Confidence               000000         0000  0           000011111 2333343333446789999999998888876666


Q ss_pred             HH-HHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938          211 DL-LRFLRKECEERGATIIYATHIFDGLEN  239 (348)
Q Consensus       211 ~l-~~~l~~l~~~~g~tviivtHd~~~~~~  239 (348)
                      .+ +.+++.+.+..+.++|++||+.+....
T Consensus       130 ~i~~~il~~l~~~~~~~~i~~TH~~~l~~~  159 (222)
T cd03287         130 AIAYATLHYLLEEKKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             HHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence            64 566666654448899999999998653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.56  E-value=9.3e-15  Score=153.54  Aligned_cols=77  Identities=22%  Similarity=0.098  Sum_probs=65.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH-HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-FLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~-~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ..+++||+||+|++.|++++ .+|.++|||||++|+||.....+.. ++..+. +.|.++|++||+.+.+...+++..++
T Consensus       386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~-~~~~~vIitTH~~el~~~~~~~~~v~  463 (782)
T PRK00409        386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR-KRGAKIIATTHYKELKALMYNREGVE  463 (782)
T ss_pred             hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECChHHHHHHHhcCCCeE
Confidence            45688999999999999998 8999999999999999999988865 555554 56899999999999888777765543

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.55  E-value=1.1e-14  Score=138.67  Aligned_cols=176  Identities=23%  Similarity=0.282  Sum_probs=117.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccc-hhhhhh---hhhcCCCcccccc
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLG-GEWRRE---VAFAGFEVPIQMD  138 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~  138 (348)
                      .+|++.|++|.||-||||-+++++|-++|.-|.- .++ +.|.       ..+.+.. .+++..   +.-.......-+.
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~p-p~w~-------~il~~frgselq~yftk~le~~lk~~~kpQ  168 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNP-PDWQ-------EILTYFRGSELQNYFTKILEDNLKAIIKPQ  168 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCC-cchH-------HHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence            4799999999999999999999999988876641 000 0000       0011110 011100   0000000000000


Q ss_pred             chHHHHH-------hcc-CC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHH
Q 018938          139 VSAEKMI-------FGV-AG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL  207 (348)
Q Consensus       139 ~~~~~~~-------~~~-~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~  207 (348)
                       -+..+.       -+. .. .+.....++++.+.+.  +++.+.+||||+-||.+||.+.+++.++.++|||.+.||..
T Consensus       169 -yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVK  247 (592)
T KOG0063|consen  169 -YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVK  247 (592)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHH
Confidence             000000       000 00 0112344566666654  57788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          208 ARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       208 ~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      .+..-...|+.+.. -..=||+|.||+..+..+.|-+.++..
T Consensus       248 QRLkaA~~IRsl~~-p~~YiIVVEHDLsVLDylSDFiCcLYG  288 (592)
T KOG0063|consen  248 QRLKAAITIRSLIN-PDRYIIVVEHDLSVLDYLSDFICCLYG  288 (592)
T ss_pred             HhhhHHHHHHHhhC-CCCeEEEEEeechHHHhhhcceeEEec
Confidence            99999999999875 467899999999999999999998874

>TIGR00618 sbcc exonuclease SbcC

Probab=99.54  E-value=1.6e-14  Score=157.34  Aligned_cols=82  Identities=18%  Similarity=0.131  Sum_probs=76.4

Q ss_pred             CccCCCCCHHHHHHHHHHHHHcc----------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLK----------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  237 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~----------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~  237 (348)
                      .+++.+|||||++||+||+||+.          +|++|||||||++||+.++..+++.|.++.. .|++|+||||++++.
T Consensus       945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618       945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFR 1023 (1042)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH
Confidence            45689999999999999999986          7999999999999999999999999999875 699999999999999


Q ss_pred             hhhCCEEEEEcCC
Q 018938          238 ENWPSHIVYVAHG  250 (348)
Q Consensus       238 ~~~~d~v~~l~~G  250 (348)
                      ..+||+|.|++.|
T Consensus      1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred             HhhCCEEEEEECC
Confidence            9999999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00634 recN DNA repair protein RecN

Probab=99.53  E-value=2.3e-14  Score=146.42  Aligned_cols=77  Identities=17%  Similarity=0.228  Sum_probs=70.5

Q ss_pred             CCCCHHHHHHHHHHHHHccC----CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          172 HKVSDGQRRRVQICMGLLKP----FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~~----P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ..|||||+||++||++++..    |++|||||||+|||+..+..+.+.|+++. + +.+||+|||++..+. +||++++|
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~~~~~-~ad~~~~l  515 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLPQVAA-HADAHFKV  515 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChHHHHH-hcCeEEEE
Confidence            36899999999999999985    69999999999999999999999999986 3 799999999999885 89999999


Q ss_pred             cCCE
Q 018938          248 AHGK  251 (348)
Q Consensus       248 ~~G~  251 (348)
                      ++|.
T Consensus       516 ~k~~  519 (563)
T TIGR00634       516 EKEG  519 (563)
T ss_pred             EEcc
Confidence            8864

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.52  E-value=9.8e-14  Score=126.18  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=52.3

Q ss_pred             CCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEecChhh--------
Q 018938          173 KVSDGQRRRVQICMGLLK----PFKVLLLDEITVDL----DVLARADLLRFLRKECEERGATIIYATHIFDG--------  236 (348)
Q Consensus       173 ~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgL----D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--------  236 (348)
                      .+|+++.++-.+++.+-.    +|+++++||||+++    |+..+..++++++.+.+ .|.|+++ ||+...        
T Consensus        95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~-t~~~~~~~~~~~~~  172 (230)
T PRK08533         95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIIL-TANPKELDESVLTI  172 (230)
T ss_pred             cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEE-Eeccccccccccee
Confidence            366666666555554433    69999999999999    88888899999998864 4776555 566543        


Q ss_pred             hhhhCCEEEEEc
Q 018938          237 LENWPSHIVYVA  248 (348)
Q Consensus       237 ~~~~~d~v~~l~  248 (348)
                      +..+||-|+.|+
T Consensus       173 ~~~~~DgvI~L~  184 (230)
T PRK08533        173 LRTAATMLIRLE  184 (230)
T ss_pred             EEEeeeEEEEEE
Confidence            244566666665

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.50  E-value=2.9e-13  Score=133.26  Aligned_cols=186  Identities=16%  Similarity=0.235  Sum_probs=111.4

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      ..+++++ |++.+|++++|+|+||+|||||+++|+|+..++.|.|.+.|+....-..+.. ..+.  ...+++.+.+...
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~-~~l~--~~~l~r~v~vv~~  221 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIE-RDLG--PEGLKRSIVVVAT  221 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHH-hhcC--hhhhcCeEEEEEC
Confidence            5689999 9999999999999999999999999999999999988887653211000000 0000  0112223333321


Q ss_pred             CccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCH-HHHHHHHHHHHHccCCcEEEeecc--CCCCCHHH
Q 018938          132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSD-GQRRRVQICMGLLKPFKVLLLDEI--TVDLDVLA  208 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg-GqrQRv~lAraL~~~P~lLlLDEP--tsgLD~~~  208 (348)
                      ....    ....+....   ..-.+.+.+..-|.+.--...+|+- -|-+| .|+         +.+.||  |+|+||..
T Consensus       222 ~~~~----~~~r~~~~~---~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~r-Eis---------l~~ge~P~~~G~dp~~  284 (438)
T PRK07721        222 SDQP----ALMRIKGAY---TATAIAEYFRDQGLNVMLMMDSVTRVAMAQR-EIG---------LAVGEPPTTKGYTPSV  284 (438)
T ss_pred             CCCC----HHHHHHHHH---HHHHHHHHHHHCCCcEEEEEeChHHHHHHHH-HHH---------HhcCCCCccccCCHHH
Confidence            1100    011110000   0011223332223210001122221 11111 011         123454  79999999


Q ss_pred             HHHHHHHHHHHHH-hcCc-----EEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          209 RADLLRFLRKECE-ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       209 ~~~l~~~l~~l~~-~~g~-----tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ...+.+++.++.+ +.|.     ||++.+||+++  .+||++..|.+|+|+.++...+
T Consensus       285 ~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        285 FAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             HHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence            9999999999864 3474     99999999995  7999999999999999887654

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.49  E-value=1.3e-13  Score=124.21  Aligned_cols=143  Identities=14%  Similarity=0.164  Sum_probs=88.8

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      ..+-+|++|+..+|++++|+||||+||||+++++++......     .|-.+               +... ..+.+  +
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~-----~G~~v---------------pa~~-~~i~~--~   73 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ-----MGMDV---------------PAKS-MRLSL--V   73 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH-----cCCcc---------------Cccc-cEecc--c
Confidence            468899999999999999999999999999999987421100     00000               0000 00000  0


Q ss_pred             CccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHH
Q 018938          132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  211 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~  211 (348)
                      . .++..+..          . +.           .....++++ -|-+++.-....+.+|.++|||||++|+|+.....
T Consensus        74 ~-~i~~~~~~----------~-d~-----------~~~~~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~  129 (218)
T cd03286          74 D-RIFTRIGA----------R-DD-----------IMKGESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYA  129 (218)
T ss_pred             c-EEEEecCc----------c-cc-----------cccCcchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence            0 00000000          0 00           000011122 24444444444467899999999999999999988


Q ss_pred             HHHH-HHHHHHhcCcEEEEEecChhhhhhhC
Q 018938          212 LLRF-LRKECEERGATIIYATHIFDGLENWP  241 (348)
Q Consensus       212 l~~~-l~~l~~~~g~tviivtHd~~~~~~~~  241 (348)
                      +... ++.+.+..+.++|++||+++.+..++
T Consensus       130 la~ail~~L~~~~~~~~i~~TH~~el~~~~~  160 (218)
T cd03286         130 IAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH  160 (218)
T ss_pred             HHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence            8877 56665433899999999999988776

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.48  E-value=4.5e-14  Score=144.40  Aligned_cols=79  Identities=18%  Similarity=0.272  Sum_probs=69.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHc----------cCCcEEEeeccC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938          170 RMHKVSDGQRRRVQICMGLL----------KPFKVLLLDEIT-VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~----------~~P~lLlLDEPt-sgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                      .+.+|||||+||++||+||+          .+|++||||||| ++||+.++..+.++|.++   .|.|||+|||+.+.. 
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~~~-  540 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDHDP-  540 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchhch-
Confidence            45789999999999999987          599999999998 789999999999999987   378999999997665 


Q ss_pred             hhCCEEEEEcC-CEE
Q 018938          239 NWPSHIVYVAH-GKL  252 (348)
Q Consensus       239 ~~~d~v~~l~~-G~i  252 (348)
                      ..||++++|.+ |+.
T Consensus       541 ~~~d~~~~l~~~~~~  555 (562)
T PHA02562        541 QKFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhhcEEEEEEECCe
Confidence            56899999986 554

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.47  E-value=2.5e-13  Score=121.93  Aligned_cols=49  Identities=10%  Similarity=0.076  Sum_probs=44.4

Q ss_pred             CCCCHH--HHHHHHHHHHHccCCcEEEeeccC-----CCCCHHHHHHHHHHHHHHH
Q 018938          172 HKVSDG--QRRRVQICMGLLKPFKVLLLDEIT-----VDLDVLARADLLRFLRKEC  220 (348)
Q Consensus       172 ~~LSgG--qrQRv~lAraL~~~P~lLlLDEPt-----sgLD~~~~~~l~~~l~~l~  220 (348)
                      +..||+  |++++.||++++.+|+++++||||     ++||+..++.+.+.+++++
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~  204 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA  204 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence            344444  999999999999999999999999     9999999999999999875

>PRK10869 recombination and repair protein; Provisional

Probab=99.47  E-value=1.5e-13  Score=139.60  Aligned_cols=76  Identities=18%  Similarity=0.303  Sum_probs=69.1

Q ss_pred             CCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          173 KVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       173 ~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      .|||||+|||+||++++.    +|+++|||||++|||+.+...+.+.|+++.+  +.+||+|||++..+ .+||+.+.+.
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~ad~~~~v~  506 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVA-GCGHQHFFVS  506 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH-HhCCEEEEEe
Confidence            479999999999999997    6899999999999999999999999999853  68999999999876 6999999998


Q ss_pred             CCE
Q 018938          249 HGK  251 (348)
Q Consensus       249 ~G~  251 (348)
                      ++.
T Consensus       507 k~~  509 (553)
T PRK10869        507 KET  509 (553)
T ss_pred             ccc
Confidence            753

>PRK13695 putative NTPase; Provisional

Probab=99.46  E-value=9e-14  Score=120.95  Aligned_cols=81  Identities=12%  Similarity=0.108  Sum_probs=65.7

Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeec--cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDE--ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  246 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDE--PtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~  246 (348)
                      +....+||+++-++.+++..+.+|++||+||  |+.++|+.    +.+.+.++. +.+.++|+++|+ ..+..++|++..
T Consensus        74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~-~~~~~~i~v~h~-~~~~~~~~~i~~  147 (174)
T PRK13695         74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVL-DSEKPVIATLHR-RSVHPFVQEIKS  147 (174)
T ss_pred             eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHH-hCCCeEEEEECc-hhhHHHHHHHhc
Confidence            3456799999999999999999999999999  55566654    455555555 458999999999 456678999999


Q ss_pred             EcCCEEeee
Q 018938          247 VAHGKLQLA  255 (348)
Q Consensus       247 l~~G~i~~~  255 (348)
                      +.+|+|...
T Consensus       148 ~~~~~i~~~  156 (174)
T PRK13695        148 RPGGRVYEL  156 (174)
T ss_pred             cCCcEEEEE
Confidence            999999765

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.44  E-value=6.1e-13  Score=122.00  Aligned_cols=76  Identities=13%  Similarity=0.101  Sum_probs=61.7

Q ss_pred             CCCCHHH--------HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHH-HHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938          172 HKVSDGQ--------RRRVQICMGLLKPFKVLLLDEITVDLDVLARAD-LLRFLRKECEERGATIIYATHIFDGLENWPS  242 (348)
Q Consensus       172 ~~LSgGq--------rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~-l~~~l~~l~~~~g~tviivtHd~~~~~~~~d  242 (348)
                      ..+|||+        +||+++||++..++.|.+|  ||+.+|..+... ++  +.++. ..+.|.|++||++.... ..|
T Consensus       128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~-~~~~~~ivls~~la~~~-~~p  201 (249)
T cd01128         128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFK-GTGNMELVLDRRLAERR-IFP  201 (249)
T ss_pred             CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHh-cCCCcEEEEchHHhhCC-CCC
Confidence            3469999        9999999999999999999  999999644332 33  34432 34789999999999886 579


Q ss_pred             EEEEEcCCEEe
Q 018938          243 HIVYVAHGKLQ  253 (348)
Q Consensus       243 ~v~~l~~G~i~  253 (348)
                      .|.+|+.|.+.
T Consensus       202 aI~vl~s~sr~  212 (249)
T cd01128         202 AIDILKSGTRK  212 (249)
T ss_pred             eEEEcCCCCcc
Confidence            99999999973

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.42  E-value=3.9e-13  Score=144.39  Aligned_cols=78  Identities=22%  Similarity=0.253  Sum_probs=68.9

Q ss_pred             ccCCCCCHHHHH------HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938          169 WRMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS  242 (348)
Q Consensus       169 ~~~~~LSgGqrQ------Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d  242 (348)
                      .++..|||||+|      |++||++++.+|+++||||||++||+..+..+.++|..+.. .+.+||+||||.++. .+||
T Consensus       784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~~~-~~~d  861 (880)
T PRK03918        784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEELK-DAAD  861 (880)
T ss_pred             CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHH-HhCC
Confidence            467899999999      55666788899999999999999999999999999998764 478999999999855 6899


Q ss_pred             EEEEEc
Q 018938          243 HIVYVA  248 (348)
Q Consensus       243 ~v~~l~  248 (348)
                      ++++|.
T Consensus       862 ~~~~l~  867 (880)
T PRK03918        862 YVIRVS  867 (880)
T ss_pred             eEEEEE
Confidence            999997

>PRK01156 chromosome segregation protein; Provisional

Probab=99.42  E-value=6.5e-13  Score=142.96  Aligned_cols=78  Identities=21%  Similarity=0.217  Sum_probs=68.7

Q ss_pred             cCCCCCHHHHHHHHH------HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcC--cEEEEEecChhhhhhhC
Q 018938          170 RMHKVSDGQRRRVQI------CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG--ATIIYATHIFDGLENWP  241 (348)
Q Consensus       170 ~~~~LSgGqrQRv~l------AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g--~tviivtHd~~~~~~~~  241 (348)
                      .+..|||||++|++|      |++|+.+|++++|||||++||+..+..+.++|....+..+  .|||+||||.+++ .+|
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~  876 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA  876 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc
Confidence            578999999999975      5999999999999999999999999999999986554433  4899999999987 589


Q ss_pred             CEEEEEc
Q 018938          242 SHIVYVA  248 (348)
Q Consensus       242 d~v~~l~  248 (348)
                      |+++.+.
T Consensus       877 d~ii~~~  883 (895)
T PRK01156        877 DVAYEVK  883 (895)
T ss_pred             CeEEEEE
Confidence            9999987

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.41  E-value=5.7e-13  Score=144.81  Aligned_cols=81  Identities=23%  Similarity=0.160  Sum_probs=74.9

Q ss_pred             CccCCCCCHHHHHHHHHHHHHcc--------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLK--------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN  239 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~--------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~  239 (348)
                      .+++.+|||||+++++||+||+.        +|++||+||||++||+.+...+++.|..+.+ .|+||+||||..++..+
T Consensus       944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246        944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKER 1022 (1047)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHHh
Confidence            46789999999999999999995        8999999999999999999999999999864 59999999999999999


Q ss_pred             hCCEEEEEcC
Q 018938          240 WPSHIVYVAH  249 (348)
Q Consensus       240 ~~d~v~~l~~  249 (348)
                      +..+|.|-..
T Consensus      1023 i~~qi~V~k~ 1032 (1047)
T PRK10246       1023 IPVQIKVKKI 1032 (1047)
T ss_pred             ccceEEEEEC
Confidence            9999888865

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.41  E-value=1.8e-12  Score=113.37  Aligned_cols=80  Identities=13%  Similarity=0.013  Sum_probs=67.8

Q ss_pred             CccCCCCCHHHHH------HHHHHHHHccCCcEEEeeccCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEEecChhh--
Q 018938          168 SWRMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLD---VLARADLLRFLRKECEERGATIIYATHIFDG--  236 (348)
Q Consensus       168 ~~~~~~LSgGqrQ------Rv~lAraL~~~P~lLlLDEPtsgLD---~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--  236 (348)
                      +..+..+|+|++|      ....+.+...+|+++++|||++.+|   ...+..+.+++..+.+ .|.|+|+++|+...  
T Consensus        66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~  144 (187)
T cd01124          66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEG  144 (187)
T ss_pred             ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCC
Confidence            5567889999998      5555556778999999999999999   8888888888888764 59999999998875  


Q ss_pred             -------hhhhCCEEEEEc
Q 018938          237 -------LENWPSHIVYVA  248 (348)
Q Consensus       237 -------~~~~~d~v~~l~  248 (348)
                             +..+||.++.|+
T Consensus       145 ~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         145 TGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             cccCcCceeEeeeEEEEEE
Confidence                   678899999886

A related protein is found in archaea.

>TIGR00606 rad50 rad50

Probab=99.36  E-value=1.1e-12  Score=145.70  Aligned_cols=73  Identities=23%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             cCCCCCHHHHH------HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEecChhhhhh
Q 018938          170 RMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE----ERGATIIYATHIFDGLEN  239 (348)
Q Consensus       170 ~~~~LSgGqrQ------Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~----~~g~tviivtHd~~~~~~  239 (348)
                      ..+.|||||+|      |++||+||+.+|++|||||||++||+.+...+.+.|..+..    ..|.|||+||||++++..
T Consensus      1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence            45789999999      99999999999999999999999999999999999988742    247899999999999998


Q ss_pred             hCC
Q 018938          240 WPS  242 (348)
Q Consensus       240 ~~d  242 (348)
                      +|.
T Consensus      1276 ~~~ 1278 (1311)
T TIGR00606      1276 LGR 1278 (1311)
T ss_pred             Hhh
Confidence            863

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.36  E-value=2.6e-12  Score=125.70  Aligned_cols=164  Identities=14%  Similarity=0.165  Sum_probs=114.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .++.+.++..|..        +..+++.+ |.+.+|++++|+|+||+|||||+++|+|...++.|.|.+.|+...     
T Consensus       130 ~~~r~~i~~~l~T--------GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~-----  195 (432)
T PRK06793        130 AFEREEITDVFET--------GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR-----  195 (432)
T ss_pred             chheechhhccCC--------CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-----
Confidence            4677888888852        35788885 999999999999999999999999999998887776655553210     


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQICM  186 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAr  186 (348)
                                 +                   ..+++           ...+..-++.   .-....+.|.|+|+|++.+.
T Consensus       196 -----------e-------------------v~e~~-----------~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a  234 (432)
T PRK06793        196 -----------E-------------------VKDFI-----------RKELGEEGMRKSVVVVATSDESHLMQLRAAKLA  234 (432)
T ss_pred             -----------c-------------------HHHHH-----------HHHhhhcccceeEEEEECCCCCHHHHHHHHHHH
Confidence                       0                   00000           0000000111   01234678999999999999


Q ss_pred             HHc-------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          187 GLL-------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       187 aL~-------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      +.+       .++-+|++|+||+..|+.  +++...+.+.-. .|.+..+.||...    +++|......|.|...
T Consensus       235 ~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~----L~ERag~~~~GSiT~~  303 (432)
T PRK06793        235 TSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKK----LLERSGKTQKGSITGI  303 (432)
T ss_pred             HHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchh----HHHHhccCCCcceEEE
Confidence            988       899999999999999995  566666666543 3788888888544    4444444578887543

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.29  E-value=2.9e-11  Score=123.36  Aligned_cols=98  Identities=19%  Similarity=0.275  Sum_probs=86.8

Q ss_pred             cCccCCCCCHHHHHHHHHHHHHccC--CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          167 LSWRMHKVSDGQRRRVQICMGLLKP--FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       167 ~~~~~~~LSgGqrQRv~lAraL~~~--P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                      +++...+|||||.||+-||.-+=.+  -=+.+||||+.||-+.--..+++.|+++. +.|-|+|+|.||.+.+. .||+|
T Consensus       475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDedti~-~AD~i  552 (935)
T COG0178         475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDEDTIR-AADHI  552 (935)
T ss_pred             ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCHHHHh-hcCEE
Confidence            5788999999999999999998654  34789999999999999999999999985 67999999999988775 69999


Q ss_pred             EEE------cCCEEeeecChhHHHHhhh
Q 018938          245 VYV------AHGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       245 ~~l------~~G~i~~~g~~~~~~~~~~  266 (348)
                      +-|      +.|+|++.|++++++..+.
T Consensus       553 IDiGPgAG~~GGeIv~~Gtp~~i~~~~~  580 (935)
T COG0178         553 IDIGPGAGEHGGEIVAEGTPEELLANPE  580 (935)
T ss_pred             EeeCCCCCcCCCEEEEccCHHHHHhCCc
Confidence            987      4689999999999987653

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.28  E-value=4.3e-12  Score=139.69  Aligned_cols=77  Identities=18%  Similarity=0.251  Sum_probs=68.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHc----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEE
Q 018938          169 WRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHI  244 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v  244 (348)
                      ..+..|||||+||++||++++    .+|+++||||||++||+..+..+.++|..+++  +.+||||||++.++ .+||++
T Consensus      1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168      1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred             ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHH-HHhhhH
Confidence            457899999999999999984    67799999999999999999999999998853  47899999999987 579998


Q ss_pred             EEEc
Q 018938          245 VYVA  248 (348)
Q Consensus       245 ~~l~  248 (348)
                      +.+.
T Consensus      1162 ~~~~ 1165 (1179)
T TIGR02168      1162 YGVT 1165 (1179)
T ss_pred             eeee
Confidence            7553

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.27  E-value=5.6e-11  Score=102.34  Aligned_cols=82  Identities=24%  Similarity=0.229  Sum_probs=68.0

Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +..+..|-||-=---+.+.+- +--+.|||||-++|.|.-+-.++..|+++++. |.-+||+||.+=.+.-=.-+|+-++
T Consensus       125 ~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~  202 (233)
T COG3910         125 RSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEIS  202 (233)
T ss_pred             cchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEe
Confidence            346788999988777777754 55799999999999999999999999999864 8999999999877665456788887


Q ss_pred             CCEE
Q 018938          249 HGKL  252 (348)
Q Consensus       249 ~G~i  252 (348)
                      .+.+
T Consensus       203 ~~g~  206 (233)
T COG3910         203 ESGI  206 (233)
T ss_pred             cCCc
Confidence            7654

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.25  E-value=6.6e-11  Score=125.70  Aligned_cols=70  Identities=14%  Similarity=0.176  Sum_probs=61.4

Q ss_pred             ccCCcEEEeeccCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh---------hhCCEEEEEcCCEEeeecCh
Q 018938          189 LKPFKVLLLDEITVDL-DVLARADLLRFLRKECEERGATIIYATHIFDGLE---------NWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       189 ~~~P~lLlLDEPtsgL-D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~---------~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ..+|+++++|||+.+| |+..+..+.++++.+.+ .|.++|++||+++.+.         ..|+++++|.+|++...+..
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR  728 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence            6799999999999999 79999999999999854 5899999999999886         57999999999998766544


Q ss_pred             h
Q 018938          259 D  259 (348)
Q Consensus       259 ~  259 (348)
                      +
T Consensus       729 ~  729 (818)
T PRK13830        729 E  729 (818)
T ss_pred             H
Confidence            3

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.23  E-value=4.1e-12  Score=120.53  Aligned_cols=144  Identities=13%  Similarity=0.075  Sum_probs=94.5

Q ss_pred             eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccc
Q 018938           58 FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM  137 (348)
Q Consensus        58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (348)
                      +++.+..|+.++|+||+|||||||+++|++++++..+.+.+....           ++...  . ...+.+.        
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~-----------El~~~--~-~~~~~l~--------  194 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTR-----------EIFLP--H-PNYVHLF--------  194 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCcc-----------ccCCC--C-CCEEEEE--------
Confidence            557788999999999999999999999999988777766553210           00000  0 0000000        


Q ss_pred             cchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHH
Q 018938          138 DVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR  217 (348)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~  217 (348)
                                ... .               ..  .  +++....-.++.+|-.+|++|++|||.+       .+++++++
T Consensus       195 ----------~~~-~---------------~~--~--~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~  237 (308)
T TIGR02788       195 ----------YSK-G---------------GQ--G--LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFIR  237 (308)
T ss_pred             ----------ecC-C---------------CC--C--cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHH
Confidence                      000 0               00  0  1111122356778899999999999996       35567777


Q ss_pred             HHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938          218 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  262 (348)
Q Consensus       218 ~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  262 (348)
                      .+. ..+.+++.++|..+ +....+|+..|..|++...|.+.+..
T Consensus       238 a~~-~g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       238 AVN-TGHPGSITTLHAGS-PEEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             HHh-cCCCeEEEEEeCCC-HHHHHHHHHHHhhccccccCCCHHHH
Confidence            664 32335799999998 44568999999999988877777665

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK00064 recF recombination protein F; Reviewed

Probab=99.20  E-value=4.1e-11  Score=116.11  Aligned_cols=77  Identities=30%  Similarity=0.410  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHHHHc---------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhC-
Q 018938          172 HKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP-  241 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~---------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~-  241 (348)
                      ..+|.||+|+++||++|+         .+|+|||||||+++||+..+..+++.+.++    +..++++||+.+.+..++ 
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~~  347 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLLE  347 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhhc
Confidence            579999999999999986         799999999999999999999999988653    458999999998877764 


Q ss_pred             -CEEEEEcCCEE
Q 018938          242 -SHIVYVAHGKL  252 (348)
Q Consensus       242 -d~v~~l~~G~i  252 (348)
                       ++++.|++|++
T Consensus       348 ~~~i~~v~~G~i  359 (361)
T PRK00064        348 NAKIFHVEQGKI  359 (361)
T ss_pred             cCcEEEEeCCEE
Confidence             57999999987

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.20  E-value=2.7e-11  Score=96.35  Aligned_cols=46  Identities=17%  Similarity=0.278  Sum_probs=42.3

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA  103 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~  103 (348)
                      ..+|++++|++++|++++|+||||||||||++++.      .|.+.+.|.++
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di   47 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDN   47 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence            47999999999999999999999999999999986      78899988765

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK02224 chromosome segregation protein; Provisional

Probab=99.19  E-value=4e-11  Score=128.95  Aligned_cols=79  Identities=25%  Similarity=0.238  Sum_probs=68.3

Q ss_pred             cCCCCCHHHHH------HHHHHHHHccC-----C-cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCc-EEEEEecChhh
Q 018938          170 RMHKVSDGQRR------RVQICMGLLKP-----F-KVLLLDEITVDLDVLARADLLRFLRKECEERGA-TIIYATHIFDG  236 (348)
Q Consensus       170 ~~~~LSgGqrQ------Rv~lAraL~~~-----P-~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~-tviivtHd~~~  236 (348)
                      .+..||||||+      |++||++++.+     | +++||||||++||+..+..+.++|..+.. .|. +||+||||.++
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~~~  856 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDDEL  856 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECChHH
Confidence            36789999999      89999998863     3 67999999999999999999999999864 354 89999999999


Q ss_pred             hhhhCCEEEEEcCC
Q 018938          237 LENWPSHIVYVAHG  250 (348)
Q Consensus       237 ~~~~~d~v~~l~~G  250 (348)
                      +. .||+++.|...
T Consensus       857 ~~-~ad~~~~~~~~  869 (880)
T PRK02224        857 VG-AADDLVRVEKD  869 (880)
T ss_pred             HH-hcCeeEEeecC
Confidence            85 69999999644

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.18  E-value=2.6e-10  Score=96.52  Aligned_cols=65  Identities=15%  Similarity=0.184  Sum_probs=48.9

Q ss_pred             CCCHHHHHHHHHHHHHccCCcEEEeeccCC----------CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938          173 KVSDGQRRRVQICMGLLKPFKVLLLDEITV----------DLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPts----------gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                      ..+.++.++++.+++...+|+++++|||++          +.|......+.+++.. .++.+.|+|+++|......
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~~~  141 (165)
T cd01120          67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSGDK  141 (165)
T ss_pred             CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCccc
Confidence            345566678889999999999999999995          4555555666666554 4556999999999876543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.17  E-value=4.5e-11  Score=131.77  Aligned_cols=77  Identities=16%  Similarity=0.251  Sum_probs=68.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938          170 RMHKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV  245 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~  245 (348)
                      ++..||||||++++||++|+.    +|+++|||||+++||+..+..+.++|.++.+  +.++|++||+...+ .+||+++
T Consensus      1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169      1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMI-EYADRAI 1147 (1164)
T ss_pred             cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHH-HhcceeE
Confidence            467899999999999999984    7899999999999999999999999998753  57899999998766 6899998


Q ss_pred             EEcC
Q 018938          246 YVAH  249 (348)
Q Consensus       246 ~l~~  249 (348)
                      .+..
T Consensus      1148 ~~~~ 1151 (1164)
T TIGR02169      1148 GVTM 1151 (1164)
T ss_pred             eEEE
Confidence            7653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.17  E-value=3.5e-10  Score=103.06  Aligned_cols=76  Identities=13%  Similarity=0.156  Sum_probs=56.1

Q ss_pred             CCCCHHHHHHHHHHHHHcc--CCcEEEeeccCCC---CCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh-------hhh
Q 018938          172 HKVSDGQRRRVQICMGLLK--PFKVLLLDEITVD---LDVLARADLLRFLRKECEERGATIIYATHIFDG-------LEN  239 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~--~P~lLlLDEPtsg---LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~-------~~~  239 (348)
                      ...|.++.+.+..+..++.  +|+++++||||+.   +|......+++.++.+.+ .|.|+++++|+..+       +..
T Consensus        99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~  177 (234)
T PRK06067         99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRS  177 (234)
T ss_pred             ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHh
Confidence            3457788999999999987  9999999999964   555555566566666554 58999999998765       344


Q ss_pred             hCCEEEEEc
Q 018938          240 WPSHIVYVA  248 (348)
Q Consensus       240 ~~d~v~~l~  248 (348)
                      ++|-++.|+
T Consensus       178 l~DgvI~L~  186 (234)
T PRK06067        178 ICDVYLKLR  186 (234)
T ss_pred             heEEEEEEE
Confidence            555555554

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.11  E-value=6.5e-11  Score=116.07  Aligned_cols=51  Identities=24%  Similarity=0.342  Sum_probs=46.8

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEEcCeeccc
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFH  105 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i~G~~~~~  105 (348)
                      .+|++|||++++||+++|+|||||||||||+  +|+..|++| +|.++|..+..
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~   71 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS   71 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence            5899999999999999999999999999999  788888888 79999987654

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.99  E-value=2.4e-09  Score=97.83  Aligned_cols=49  Identities=24%  Similarity=0.400  Sum_probs=42.2

Q ss_pred             HHccCCcEEEeeccCCC------CCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938          187 GLLKPFKVLLLDEITVD------LDVLARADLLRFLRKECEERGATIIYATHIFDG  236 (348)
Q Consensus       187 aL~~~P~lLlLDEPtsg------LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~  236 (348)
                      +...+|+++|+| |+++      +|+.....+++.|.+++++.|+|||+++|....
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~  161 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG  161 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence            346899999999 7764      799999999999999988889999999998643

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.99  E-value=8.2e-09  Score=101.94  Aligned_cols=186  Identities=19%  Similarity=0.237  Sum_probs=107.0

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchh-hhhhhhhc
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGE-WRREVAFA  129 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  129 (348)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.+.+...|.....-..+..    ...+.. +.+.+.+.
T Consensus       150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~----~~~~~~~l~~tvvv~  224 (440)
T TIGR01026       150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIE----HDLGEEGLKRSVVVV  224 (440)
T ss_pred             eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHH----HHhcccccceEEEEE
Confidence            36799999 9999999999999999999999999999988777655554432100000000    000000 00000110


Q ss_pred             CCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCH-HHHHHHHHHHHHccCCcEEEeecc--CCCCCH
Q 018938          130 GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSD-GQRRRVQICMGLLKPFKVLLLDEI--TVDLDV  206 (348)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg-GqrQRv~lAraL~~~P~lLlLDEP--tsgLD~  206 (348)
                      ....    ......+....   ..-...+.+...|.+.--...+|+- -|-+| .|+         +.+.||  +.|+||
T Consensus       225 ~~~d----~~p~~r~~~~~---~a~t~AE~frd~G~~Vll~~DslTr~A~A~R-Eis---------l~~ge~P~~~Gypp  287 (440)
T TIGR01026       225 ATSD----QSPLLRLKGAY---VATAIAEYFRDQGKDVLLLMDSVTRFAMAQR-EIG---------LAAGEPPATKGYTP  287 (440)
T ss_pred             ECCC----CCHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEeChHHHHHHHH-HHH---------HhcCCCCcccccCh
Confidence            0000    00011111000   0011223332223221111233332 22222 122         445675  569999


Q ss_pred             HHHHHHHHHHHHHHHhcCc-------EEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          207 LARADLLRFLRKECEERGA-------TIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       207 ~~~~~l~~~l~~l~~~~g~-------tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      .....+.+++.+... .+.       ||++.+||+  .+.+||++..+.+|+|+.+....+.
T Consensus       288 ~~~~~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~--~dpi~d~~~~i~dG~ivLsr~la~~  346 (440)
T TIGR01026       288 SVFSTLPRLLERAGA-SGKGSITAFYTVLVEGDDM--NEPIADSVRGILDGHIVLSRALAQR  346 (440)
T ss_pred             hHHHHHHHHHHHhcc-CCCCeeeEEEEEEccCcCC--CcchhhhhccccceEEEEecchhhC
Confidence            999999999998764 467       899999998  4668999999999999988776554

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR00611 recf recF protein

Probab=98.98  E-value=9.9e-10  Score=106.50  Aligned_cols=63  Identities=27%  Similarity=0.443  Sum_probs=57.5

Q ss_pred             CCCCHHHHHHHHHHHHHcc---------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938          172 HKVSDGQRRRVQICMGLLK---------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~---------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                      ..+|.||++++.||.+|+.         +|+|||||||+++||+..+..+++.|.+.    |.+|+++||+++.+.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~  345 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK  345 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence            3589999999999999999         99999999999999999999999999642    679999999988765

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.93  E-value=8.3e-11  Score=118.22  Aligned_cols=70  Identities=14%  Similarity=0.274  Sum_probs=55.3

Q ss_pred             CccCCCCCHHHHHHHHHH--HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh--------h
Q 018938          168 SWRMHKVSDGQRRRVQIC--MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG--------L  237 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lA--raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--------~  237 (348)
                      ++....+|+|++|||.|+  .+|...|+.+          +..+..++++++.+. +.|+|+|++||+.+.        +
T Consensus       110 ~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~~~~~~~~~~  178 (484)
T TIGR02655       110 ERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLK-QIGVTTVMTTERIEEYGPIARYGV  178 (484)
T ss_pred             HHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHH-HCCCEEEEEecCcccccccccCCc
Confidence            344578999999999999  5665655544          567888999988875 569999999999764        2


Q ss_pred             -hhhCCEEEEEc
Q 018938          238 -ENWPSHIVYVA  248 (348)
Q Consensus       238 -~~~~d~v~~l~  248 (348)
                       +.+||.|+.|+
T Consensus       179 ~e~laDgVI~L~  190 (484)
T TIGR02655       179 EEFVSDNVVILR  190 (484)
T ss_pred             eeEeeeeEEEEE
Confidence             67899999886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.93  E-value=3e-08  Score=80.79  Aligned_cols=63  Identities=32%  Similarity=0.245  Sum_probs=48.5

Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH-----HHHHHHHhcCcEEEEEecC
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR-----FLRKECEERGATIIYATHI  233 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~-----~l~~l~~~~g~tviivtHd  233 (348)
                      ....++++..+..+++|-...|.+|++||+..-.+.........     .........+..+|+++|.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            34667888888888888888899999999999999988776654     1222333457888999985

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.93  E-value=3.9e-09  Score=112.50  Aligned_cols=69  Identities=23%  Similarity=0.177  Sum_probs=50.7

Q ss_pred             CCCCHHHHHHHHHHHHHcc--CCcEEEeecc---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938          172 HKVSDGQRRRVQICMGLLK--PFKVLLLDEI---TVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  243 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~--~P~lLlLDEP---tsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~  243 (348)
                      ..+|-=+.....++.+|-.  ++.++|||||   |+.+|..+  ..+.+++.+.+..+.++|++||+.+ +..++++
T Consensus       665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~e-l~~l~~~  738 (854)
T PRK05399        665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHE-LTELEEK  738 (854)
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechHH-HHHHhhh
Confidence            4567777777777777655  9999999999   99999544  4555666665444689999999954 4456664

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.91  E-value=3.4e-09  Score=114.26  Aligned_cols=79  Identities=23%  Similarity=0.266  Sum_probs=68.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHHc------cC--CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh
Q 018938          169 WRMHKVSDGQRRRVQICMGLL------KP--FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW  240 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~------~~--P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~  240 (348)
                      +.+.+|||||+-.++||.+|+      .+  -++|||||||..||+..+..+++.|..+... +.+|+||||+-++.+ .
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~eel~e-~  888 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEELKE-R  888 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHHH-h
Confidence            567899999999888877764      45  6999999999999999999999999998754 899999999988775 5


Q ss_pred             CCEEEEEcC
Q 018938          241 PSHIVYVAH  249 (348)
Q Consensus       241 ~d~v~~l~~  249 (348)
                      +|+++.+..
T Consensus       889 ~~~~i~V~k  897 (908)
T COG0419         889 ADVRIRVKK  897 (908)
T ss_pred             CCeEEEEEe
Confidence            788887754

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.89  E-value=6.4e-09  Score=92.42  Aligned_cols=57  Identities=19%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +|+++|..+|+++++|||.   |++....+   + +.+ ..|..++.++|..+.+. .++|++.+.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l-~~a-~~G~~v~~t~Ha~~~~~-~~~Rl~~l~  122 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLA---L-TAA-ETGHLVMSTLHTNSAAK-TIDRIIDVF  122 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHH---H-HHH-HcCCEEEEEecCCcHHH-HHhHHHhhc
Confidence            5889999999999999996   66543333   3 233 35889999999988664 578876663

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK14079 recF recombination protein F; Provisional

Probab=98.86  E-value=5.1e-09  Score=101.05  Aligned_cols=78  Identities=24%  Similarity=0.315  Sum_probs=63.6

Q ss_pred             CCCCHHHHHHHHHHHHHc---------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938          172 HKVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS  242 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~---------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d  242 (348)
                      .-+|+||++++.||..|+         .+|+++|||||+++||+..+..+.+.|...    ..++|-.|+    ...+|+
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~----~~~~~~  333 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTE----APPGAA  333 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCC----CCCCCc
Confidence            358999999999999999         899999999999999999999999888643    124444333    456899


Q ss_pred             EEEEEcCCEEeeecC
Q 018938          243 HIVYVAHGKLQLAMP  257 (348)
Q Consensus       243 ~v~~l~~G~i~~~g~  257 (348)
                      +++.+.+|++.-..|
T Consensus       334 ~~~~~~~~~~~~~~~  348 (349)
T PRK14079        334 LTLRIEAGVFTPEAP  348 (349)
T ss_pred             eEEEEeccEecCCCC
Confidence            999999998865443

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.84  E-value=3.9e-08  Score=105.18  Aligned_cols=69  Identities=23%  Similarity=0.190  Sum_probs=55.9

Q ss_pred             HHHHHccCCcEEEeeccCCCC-CHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh--hCCEEEEEcCCEEe
Q 018938          184 ICMGLLKPFKVLLLDEITVDL-DVLARADLLRFLRKECEERGATIIYATHIFDGLEN--WPSHIVYVAHGKLQ  253 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgL-D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~--~~d~v~~l~~G~i~  253 (348)
                      |++++..+|+++++|||+.+| |+..+..+.++++.+.+ .|.+++++||+++.+..  +++.++.....+|.
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~  751 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAANSGILDVIVESTATKIF  751 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhCchHHHHHHcCCccee
Confidence            677889999999999999999 79999999999998764 58899999999999875  34444444444444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.79  E-value=9e-09  Score=114.65  Aligned_cols=63  Identities=25%  Similarity=0.296  Sum_probs=55.2

Q ss_pred             cCCCCCHHHHHHHH----HHHH--------HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938          170 RMHKVSDGQRRRVQ----ICMG--------LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  236 (348)
Q Consensus       170 ~~~~LSgGqrQRv~----lAra--------L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~  236 (348)
                      .++.|||||||+++    +|++        +..+|++|||||||+|||+.++..++++|.++    +.++||+||.+.-
T Consensus      1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~Wg 1318 (1353)
T TIGR02680      1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSEREWG 1318 (1353)
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccchhc
Confidence            46889999999996    5755        55899999999999999999999999999765    7899999998753

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR00152 dephospho-CoA kinase

Probab=98.75  E-value=9.5e-09  Score=90.43  Aligned_cols=71  Identities=14%  Similarity=0.092  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh--hhhhCCEEEEEcCC
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG--LENWPSHIVYVAHG  250 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--~~~~~d~v~~l~~G  250 (348)
                      |+-+|..||.++..+|+.+..+|  +.+||..+..+.+.+.+.. +.|.+||+.+|.+.+  +..+||++++++.+
T Consensus        61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            88999999999999999998887  8899999999999998864 346799999999965  77889999887644

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.72  E-value=2.6e-08  Score=97.95  Aligned_cols=66  Identities=21%  Similarity=0.409  Sum_probs=57.6

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR  101 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~  101 (348)
                      ..+.++.+++++.|..        +..+++.++ +|.+|++++|+||||||||||+++|+++..|+.|.+.+.|+
T Consensus       136 ~p~~~~r~~v~~~l~T--------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGe  201 (450)
T PRK06002        136 APPAMTRARVETGLRT--------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGE  201 (450)
T ss_pred             CCCCeEeecceEEcCC--------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeeccc
Confidence            3457899999999963        467999996 99999999999999999999999999999998888777653

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.70  E-value=1.1e-08  Score=90.63  Aligned_cols=111  Identities=16%  Similarity=0.208  Sum_probs=64.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF  146 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (348)
                      ++||+||||||||||.++|++++  ..+.+.+.+.+.+....    ...     ......... ...+            
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~----~~~-----~~~~~~~~~-~~~~------------   56 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDL----SHE-----ELEERKNNN-YDHP------------   56 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEeccccccc----ccc-----cHHHhccCC-CCCC------------
Confidence            58999999999999999999976  34445444433211000    000     000000000 0000            


Q ss_pred             ccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCH
Q 018938          147 GVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV  206 (348)
Q Consensus       147 ~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~  206 (348)
                        ...+.+...+.+..+...  ...+..++|.|++++..+   .+.+|+++|+|.|+.+.++
T Consensus        57 --~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          57 --DAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             --CcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence              001222333444444332  345667889998877655   5788999999999999987

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.68  E-value=6.2e-08  Score=87.07  Aligned_cols=66  Identities=24%  Similarity=0.316  Sum_probs=54.4

Q ss_pred             CCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938          171 MHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  237 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~  237 (348)
                      ...+|.|++|.+.|+.+|...+   .++++|||-++|.|..+..++++|.+..+ .+.-||++||....+
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il  302 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL  302 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence            4567999999999998888766   89999999999999999999999988754 578999999998764

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.64  E-value=1.7e-08  Score=88.83  Aligned_cols=47  Identities=21%  Similarity=0.299  Sum_probs=41.1

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcC
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLG  100 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G  100 (348)
                      ..+=+.+.+++|+.++|+||||||||||+++|+|+++++.|.+.+.+
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied   60 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIED   60 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECC
Confidence            44556788999999999999999999999999999988888887754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.61  E-value=2.7e-07  Score=83.63  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=36.6

Q ss_pred             CCcEEEeeccCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEecChh--------hhhhhCCEEEEEc
Q 018938          191 PFKVLLLDEITVDL--DVLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVA  248 (348)
Q Consensus       191 ~P~lLlLDEPtsgL--D~~~~~~l~~~l~~l~~~~g~tviivtHd~~--------~~~~~~d~v~~l~  248 (348)
                      +|+++++|-|+.-+  ++.....+...|.++.++.|+|+|+++|...        .++.+||.|+.|+
T Consensus       121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence            35566666554432  3333344444555555678999999999643        3566788888876

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR00416 sms DNA repair protein RadA

Probab=98.59  E-value=4.5e-07  Score=90.38  Aligned_cols=62  Identities=18%  Similarity=0.247  Sum_probs=46.2

Q ss_pred             cCCcEEEeeccCCCC---------CHHHHHHHHHHHHHHHHhcCcEEEEEecChhh--------hhhhCCEEEEEcCCE
Q 018938          190 KPFKVLLLDEITVDL---------DVLARADLLRFLRKECEERGATIIYATHIFDG--------LENWPSHIVYVAHGK  251 (348)
Q Consensus       190 ~~P~lLlLDEPtsgL---------D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--------~~~~~d~v~~l~~G~  251 (348)
                      .+|+++++|.-++=.         +....+++...|.+++++.|.|+|+++|....        ++.+||.|+.|+.++
T Consensus       169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~  247 (454)
T TIGR00416       169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR  247 (454)
T ss_pred             cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence            589999999765421         12334556667778888899999999997654        678899999998654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.54  E-value=8.4e-07  Score=80.97  Aligned_cols=51  Identities=20%  Similarity=0.158  Sum_probs=37.4

Q ss_pred             ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEecChhhhhh
Q 018938          189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATHIFDGLEN  239 (348)
Q Consensus       189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-~g~tviivtHd~~~~~~  239 (348)
                      +.+..++|+||+..|=++.....+...+.+...+ .+..+|++||+.+....
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~  171 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL  171 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence            4567899999999999999988876555554444 58899999999987543

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.53  E-value=5e-07  Score=80.33  Aligned_cols=27  Identities=33%  Similarity=0.522  Sum_probs=25.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++|++++|+||||||||||+++|++.+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            589999999999999999999999975

>PLN03210 Resistant to P

Probab=98.53  E-value=3.5e-07  Score=101.20  Aligned_cols=146  Identities=21%  Similarity=0.218  Sum_probs=79.0

Q ss_pred             eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-cCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcccc
Q 018938           58 FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH-MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ  136 (348)
Q Consensus        58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~-~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (348)
                      +++..+.+++++|+|++|+|||||++.+.+.+ ...+|.+++++..+....                 . .+.... +..
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~-----------------~-~~~~~~-~~~  260 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM-----------------E-IYSSAN-PDD  260 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch-----------------h-hccccc-ccc
Confidence            56778899999999999999999999996543 234566665432110000                 0 000000 000


Q ss_pred             ccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHH
Q 018938          137 MDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  216 (348)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l  216 (348)
                      ..... .    .   ......+++...++    .+..+ ++.++|      |..++-+|+||+-    |..   ..++.|
T Consensus       261 ~~~~~-~----l---~~~~l~~il~~~~~----~~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L  314 (1153)
T PLN03210        261 YNMKL-H----L---QRAFLSEILDKKDI----KIYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDAL  314 (1153)
T ss_pred             cchhH-H----H---HHHHHHHHhCCCCc----ccCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHH
Confidence            00000 0    0   01112223332222    22222 556655      4467778889984    332   334444


Q ss_pred             HHHHH--hcCcEEEEEecChhhhhhh-CCEEEEEc
Q 018938          217 RKECE--ERGATIIYATHIFDGLENW-PSHIVYVA  248 (348)
Q Consensus       217 ~~l~~--~~g~tviivtHd~~~~~~~-~d~v~~l~  248 (348)
                      .....  ..|.+||++|||...+... +|+++.+.
T Consensus       315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~  349 (1153)
T PLN03210        315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC  349 (1153)
T ss_pred             HhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence            43221  2478999999999988655 68877663

syringae 6; Provisional

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.52  E-value=2.7e-06  Score=78.95  Aligned_cols=157  Identities=17%  Similarity=0.200  Sum_probs=82.4

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEEcCeeccccccccccCcccccchhhhhhh-hh-
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTSSGDLSYLGGEWRREV-AF-  128 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  128 (348)
                      .+.|+.+.--+.+|+++.|.|++|+|||||+..++-......| .+.+....    ..          ...+...+ .. 
T Consensus        17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E----~~----------~~~~~~r~~~~~   82 (271)
T cd01122          17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE----EP----------VVRTARRLLGQY   82 (271)
T ss_pred             cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc----cC----------HHHHHHHHHHHH
Confidence            4678888888999999999999999999999877653222212 22221100    00          00011110 00 


Q ss_pred             cCCCccccccchHHHHHhccCCCCHHHHHHHHHHcC-CC---cCccCCCCCHHHHHHHHHHHHHc--cCCcEEEeeccCC
Q 018938          129 AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLD-ID---LSWRMHKVSDGQRRRVQICMGLL--KPFKVLLLDEITV  202 (348)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~---~~~~~~~LSgGqrQRv~lAraL~--~~P~lLlLDEPts  202 (348)
                      ..........         ......+....+++.+. ..   .......++  ...-+..++.++  .+|+++++|..+.
T Consensus        83 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~  151 (271)
T cd01122          83 AGKRLHLPDT---------VFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSI  151 (271)
T ss_pred             hCCCcccCCc---------cccccHHHHHHHHHHhcCCCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHH
Confidence            0000000000         00112233333333331 11   111111122  233445555444  5899999998766


Q ss_pred             CCCH--------HHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938          203 DLDV--------LARADLLRFLRKECEERGATIIYATHI  233 (348)
Q Consensus       203 gLD~--------~~~~~l~~~l~~l~~~~g~tviivtHd  233 (348)
                      -.+.        .....++..|++++++.++||++++|-
T Consensus       152 l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~  190 (271)
T cd01122         152 MVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL  190 (271)
T ss_pred             HhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence            4433        123466777888888899999999984

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.52  E-value=1.3e-06  Score=93.17  Aligned_cols=52  Identities=17%  Similarity=0.210  Sum_probs=45.5

Q ss_pred             HHccCCcEEEeeccCCCCC-HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938          187 GLLKPFKVLLLDEITVDLD-VLARADLLRFLRKECEERGATIIYATHIFDGLEN  239 (348)
Q Consensus       187 aL~~~P~lLlLDEPtsgLD-~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~  239 (348)
                      .+..+|.++++|||...|| +.....+.++++.+. +.|.+++++||+++.+..
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d~~~  690 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLR-KLNTFVIFATQSVEDASK  690 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHh
Confidence            4567999999999999999 888999999999885 568899999999988654

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.51  E-value=7.6e-07  Score=85.81  Aligned_cols=54  Identities=19%  Similarity=0.188  Sum_probs=39.3

Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV  245 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~  245 (348)
                      +|+++|-++|++|++||+.   |+++....++.    + ..|.+|+.+.|-.+-.. ..+|++
T Consensus       187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a-~tGh~v~~T~Ha~~~~~-~~~Rl~  240 (343)
T TIGR01420       187 ALRAALREDPDVILIGEMR---DLETVELALTA----A-ETGHLVFGTLHTNSAAQ-TIERII  240 (343)
T ss_pred             HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----H-HcCCcEEEEEcCCCHHH-HHHHHH
Confidence            4678899999999999997   88776544432    2 45899999999865543 345544

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.51  E-value=1.3e-07  Score=92.89  Aligned_cols=64  Identities=17%  Similarity=0.329  Sum_probs=55.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR  101 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~  101 (348)
                      +.++.++++..|.        .+..+++++ |++.+|++++|+|+||+|||||+++|+|+..++.|.+.+.|.
T Consensus       128 ~~~~r~~v~~~l~--------tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe  191 (433)
T PRK07594        128 PAMVRQPITQPLM--------TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE  191 (433)
T ss_pred             CceeccCHhheeC--------CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence            4578888888885        247899999 999999999999999999999999999999888877666664

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.50  E-value=3e-07  Score=91.60  Aligned_cols=43  Identities=23%  Similarity=0.414  Sum_probs=36.4

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCce
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEM   95 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~   95 (348)
                      .++++.++.+..|.+++|+|||||||||++..|++.+....|.
T Consensus       244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~  286 (484)
T PRK06995        244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA  286 (484)
T ss_pred             hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence            3566777788899999999999999999999999977666553

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.49  E-value=1.5e-06  Score=84.35  Aligned_cols=61  Identities=20%  Similarity=0.267  Sum_probs=44.6

Q ss_pred             cCCcEEEeeccCC----CCC-----HHHHHHHHHHHHHHHHhcCcEEEEEecChh--------hhhhhCCEEEEEcCC
Q 018938          190 KPFKVLLLDEITV----DLD-----VLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVAHG  250 (348)
Q Consensus       190 ~~P~lLlLDEPts----gLD-----~~~~~~l~~~l~~l~~~~g~tviivtHd~~--------~~~~~~d~v~~l~~G  250 (348)
                      .+|+++++|+-.+    .+|     ....+++...|.+++++.+.|+|++.|-..        .++.++|.|+.++..
T Consensus       157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~  234 (372)
T cd01121         157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD  234 (372)
T ss_pred             cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence            5899999999532    232     233445666777888888999999999533        367889999988754

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.49  E-value=1.5e-07  Score=67.12  Aligned_cols=36  Identities=33%  Similarity=0.572  Sum_probs=29.1

Q ss_pred             eeeeeeEEeC-CCEEEEECCCCCcHHHHHHHHhCCCc
Q 018938           55 INDFTLTLNA-GDRCLLVGSNGAGKTTILKIIGGKHM   90 (348)
Q Consensus        55 l~~vsl~i~~-Ge~~~liG~NGsGKSTLlk~i~Gl~~   90 (348)
                      +++.++++.+ |+++.|+||||||||||+.+|.=++.
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            4556777775 57999999999999999999876543

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.46  E-value=3e-07  Score=71.15  Aligned_cols=51  Identities=24%  Similarity=0.361  Sum_probs=38.7

Q ss_pred             CccCCCCCHHHHH-HHHHHHH------Hcc------CCcEEEeeccCCCCCHHHHHHHHHHHHH
Q 018938          168 SWRMHKVSDGQRR-RVQICMG------LLK------PFKVLLLDEITVDLDVLARADLLRFLRK  218 (348)
Q Consensus       168 ~~~~~~LSgGqrQ-Rv~lAra------L~~------~P~lLlLDEPtsgLD~~~~~~l~~~l~~  218 (348)
                      .+....+||||+| .+.+|.+      +..      .|++++|||||++||+..+..++++|++
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            3467899999994 4444333      223      3799999999999999999999999864

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.46  E-value=7.3e-07  Score=92.16  Aligned_cols=107  Identities=23%  Similarity=0.257  Sum_probs=65.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcCCCc--------eEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccc
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPE--------MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPI  135 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G--------~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (348)
                      ....++|+||||+|||||+++|.+...+..|        -+.++|....            +..    ..          
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~------------~d~----~~----------  227 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR------------WDP----RE----------  227 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc------------CCH----HH----------
Confidence            4467999999999999999999987654333        2333332110            000    00          


Q ss_pred             cccchHHHHHhccCC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHH
Q 018938          136 QMDVSAEKMIFGVAG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADL  212 (348)
Q Consensus       136 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l  212 (348)
                           ....+++... .......+.++..++.  ....+.++|||                +|+||| +..||+..+..+
T Consensus       228 -----i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~L  285 (615)
T TIGR02903       228 -----VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKL  285 (615)
T ss_pred             -----HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence                 0000111000 0011223345566654  24567789999                999999 899999999999


Q ss_pred             HHHHHH
Q 018938          213 LRFLRK  218 (348)
Q Consensus       213 ~~~l~~  218 (348)
                      ++.|++
T Consensus       286 l~~Le~  291 (615)
T TIGR02903       286 LKVLED  291 (615)
T ss_pred             HHHHhh
Confidence            998864

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.43  E-value=3.9e-07  Score=86.62  Aligned_cols=50  Identities=24%  Similarity=0.494  Sum_probs=44.1

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR  101 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~  101 (348)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.|.+...|.
T Consensus        56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe  105 (326)
T cd01136          56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE  105 (326)
T ss_pred             CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence            46799999 999999999999999999999999999998887766655553

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>TIGR00767 rho transcription termination factor Rho

Probab=98.43  E-value=3.7e-07  Score=88.46  Aligned_cols=52  Identities=29%  Similarity=0.407  Sum_probs=47.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceee-----------eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLIN-----------DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~-----------~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .+.++||++.|+.        ++.+|+           |+++.|.+|+.++|+||.|||||||++.|+..+
T Consensus       130 ri~Fe~LTf~YP~--------er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I  192 (415)
T TIGR00767       130 RVLFENLTPLYPN--------ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI  192 (415)
T ss_pred             CeEEEEeeecCCC--------ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence            5899999999973        457886           999999999999999999999999999998854

Members of this family differ in the specificity of RNA binding.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.42  E-value=2.2e-07  Score=91.40  Aligned_cols=42  Identities=29%  Similarity=0.464  Sum_probs=38.8

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP   93 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~   93 (348)
                      +..+++++ |++.+|++++|+|+||||||||+++|+|+..++.
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv  183 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV  183 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCe
Confidence            46799999 9999999999999999999999999999887664

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.41  E-value=2.5e-07  Score=92.87  Aligned_cols=61  Identities=20%  Similarity=0.184  Sum_probs=54.3

Q ss_pred             EeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           33 INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        33 v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      +.|+++.|+         ...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|.+.+.+..
T Consensus       187 ~~d~~~v~G---------q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~  247 (506)
T PRK09862        187 QHDLSDVIG---------QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAA  247 (506)
T ss_pred             ccCeEEEEC---------cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecch
Confidence            458888884         4679999999999999999999999999999999999999999988776654

>PRK08149 ATP synthase SpaL; Validated

Probab=98.37  E-value=5e-07  Score=88.70  Aligned_cols=50  Identities=24%  Similarity=0.416  Sum_probs=41.9

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC---ceEEEcCe
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP---EMVKVLGR  101 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~---G~i~i~G~  101 (348)
                      +..+++++ |++.+|++++|+|+||+|||||+++|++...++.   |.|...|.
T Consensus       138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~  190 (428)
T PRK08149        138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGR  190 (428)
T ss_pred             CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCc
Confidence            46799999 9999999999999999999999999999876654   44444443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.35  E-value=6.3e-07  Score=78.70  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=27.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR  101 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~  101 (348)
                      |++++|+||||||||||+++|++...+   .+.+.+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~   35 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHR   35 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCE
Confidence            789999999999999999999997543   3555444

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.31  E-value=8e-07  Score=87.69  Aligned_cols=50  Identities=18%  Similarity=0.488  Sum_probs=45.4

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR  101 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~  101 (348)
                      +..+++++ |++.+|++++|+|+||+|||||+++|+|...++.|.+.+.|+
T Consensus       150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe  199 (441)
T PRK09099        150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE  199 (441)
T ss_pred             Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence            46799999 999999999999999999999999999998888887777665

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.31  E-value=5.6e-07  Score=78.47  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      +||+++|+|+||||||||+++|+|++.+    +.++|..
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~   36 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDD   36 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcc
Confidence            6999999999999999999999998654    4566653

>PRK11823 DNA repair protein RadA; Provisional

Probab=98.30  E-value=6.8e-06  Score=81.87  Aligned_cols=59  Identities=17%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             cCCcEEEeeccCCCCC---------HHHHHHHHHHHHHHHHhcCcEEEEEecChh--------hhhhhCCEEEEEc
Q 018938          190 KPFKVLLLDEITVDLD---------VLARADLLRFLRKECEERGATIIYATHIFD--------GLENWPSHIVYVA  248 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD---------~~~~~~l~~~l~~l~~~~g~tviivtHd~~--------~~~~~~d~v~~l~  248 (348)
                      .+|+++++|+.++-..         ....+++...|.+++++.|.|+|+++|-..        .++.++|.++.++
T Consensus       155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~~ag~~~lehlvD~Vi~le  230 (446)
T PRK11823        155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGAIAGPRVLEHMVDTVLYFE  230 (446)
T ss_pred             hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCCcCCcchhhhhCeEEEEEE
Confidence            5899999999875432         223445566677788888999999999432        3678899999887

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=98.30  E-value=8.6e-06  Score=73.56  Aligned_cols=57  Identities=21%  Similarity=0.299  Sum_probs=43.4

Q ss_pred             cCCcEEEeeccCC------CCCHHHHHHHHHHHHHHHHhcCcEEEEEecC---------hhhhhhhCCEEEEEc
Q 018938          190 KPFKVLLLDEITV------DLDVLARADLLRFLRKECEERGATIIYATHI---------FDGLENWPSHIVYVA  248 (348)
Q Consensus       190 ~~P~lLlLDEPts------gLD~~~~~~l~~~l~~l~~~~g~tviivtHd---------~~~~~~~~d~v~~l~  248 (348)
                      .+++++++| |.+      +.|...+..+.++++.+. +.|.|+++++|.         ...++.+||.|++|+
T Consensus       106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk-~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~  177 (224)
T TIGR03880       106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLR-ETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK  177 (224)
T ss_pred             hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHH-hCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence            468899999 544      445556777888888875 569999999995         244678899999984

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.29  E-value=5.1e-06  Score=68.17  Aligned_cols=56  Identities=25%  Similarity=0.143  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHH----hcCcEEEEEecChh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE----ERGATIIYATHIFD  235 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~----~~g~tviivtHd~~  235 (348)
                      .+......+...++.+|++||.-.. ++.....+.+.+.....    ..+.++|++|++..
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            5556667777889999999998654 66667778888877643    24788999988765

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.28  E-value=1.7e-06  Score=73.06  Aligned_cols=59  Identities=10%  Similarity=0.062  Sum_probs=40.6

Q ss_pred             HHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHH-----ccCCcEEEeeccCCCCCHHHHHHHHHHHHHH
Q 018938          157 AELIKVLDID---LSWRMHKVSDGQRRRVQICMGL-----LKPFKVLLLDEITVDLDVLARADLLRFLRKE  219 (348)
Q Consensus       157 ~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL-----~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l  219 (348)
                      .+.+...+..   ...+...+|++++++.......     ...|+++    |+|++|..+..++++.|.++
T Consensus       103 ~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         103 LDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             HHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence            3444444432   2345667899988887666552     3456666    99999999999999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.28  E-value=3.8e-06  Score=77.71  Aligned_cols=39  Identities=23%  Similarity=0.310  Sum_probs=33.2

Q ss_pred             CceeeeeeeEEeCCC-EEEEECCCCCcHHHHHHHHhCCCc
Q 018938           52 TPLINDFTLTLNAGD-RCLLVGSNGAGKTTILKIIGGKHM   90 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge-~~~liG~NGsGKSTLlk~i~Gl~~   90 (348)
                      +.++..+++.++++. ++.|+||||+|||||++.++..+.
T Consensus        29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            457888888887766 899999999999999999988653

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK13764 ATPase; Provisional

Probab=98.26  E-value=5.8e-06  Score=84.49  Aligned_cols=62  Identities=11%  Similarity=0.228  Sum_probs=47.5

Q ss_pred             HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEec---------------ChhhhhhhCCEEEEEcCCEE
Q 018938          188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH---------------IFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtH---------------d~~~~~~~~d~v~~l~~G~i  252 (348)
                      |..+||++++||.-.   .+.    ++++..+. ..|..++-+-|               ++..+..+||+|+++++|+|
T Consensus       321 LR~rPD~IivGEiRd---~Et----~~~~~~l~-~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I  392 (602)
T PRK13764        321 LLVRPDYTIYDEMRK---TED----FKIFADMR-LAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV  392 (602)
T ss_pred             HhhCCCEEEECCCCC---HHH----HHHHHHHH-HcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence            778999999999974   322    34443333 23777899999               99999999999999999999


Q ss_pred             --eeecC
Q 018938          253 --QLAMP  257 (348)
Q Consensus       253 --~~~g~  257 (348)
                        +++..
T Consensus       393 ~~v~~~~  399 (602)
T PRK13764        393 SKVYDLE  399 (602)
T ss_pred             EEEEeee
Confidence              44444

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.26  E-value=3e-06  Score=74.27  Aligned_cols=62  Identities=19%  Similarity=0.184  Sum_probs=43.9

Q ss_pred             HHHHHHcCCC---cCccCCCCCHHHHHHHH--HHHHHcc-CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh
Q 018938          157 AELIKVLDID---LSWRMHKVSDGQRRRVQ--ICMGLLK-PFKVLLLDEITVDLDVLARADLLRFLRKECEE  222 (348)
Q Consensus       157 ~~~l~~l~l~---~~~~~~~LSgGqrQRv~--lAraL~~-~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~  222 (348)
                      .+.+...++.   ...++..+|+|++|++.  +++.+-. +++++    |+|++|..+...+++.|.++.++
T Consensus       128 ~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        128 IEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             HHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence            3444545543   23456778999999987  5566544 34443    99999999999999999887653

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.25  E-value=9.5e-07  Score=87.15  Aligned_cols=50  Identities=24%  Similarity=0.460  Sum_probs=44.6

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR  101 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~  101 (348)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.|.+...|.
T Consensus       132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~  181 (422)
T TIGR02546       132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGE  181 (422)
T ss_pred             Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEcc
Confidence            46799999 999999999999999999999999999998888777666554

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.25  E-value=1.2e-06  Score=86.03  Aligned_cols=51  Identities=22%  Similarity=0.415  Sum_probs=44.9

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      +..+++ .+|++.+|++++|+|+||+|||||+++|++...++.|.+.+.|+.
T Consensus       127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer  177 (418)
T TIGR03498       127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER  177 (418)
T ss_pred             ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence            456776 699999999999999999999999999999998888877777753

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.24  E-value=7.8e-06  Score=80.21  Aligned_cols=54  Identities=20%  Similarity=0.252  Sum_probs=40.4

Q ss_pred             HHHccCCcEEEeec----------cCCCCCHHHHHHHHHHHHHHH---HhcCcEEEEEecChhhhhh
Q 018938          186 MGLLKPFKVLLLDE----------ITVDLDVLARADLLRFLRKEC---EERGATIIYATHIFDGLEN  239 (348)
Q Consensus       186 raL~~~P~lLlLDE----------PtsgLD~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~~  239 (348)
                      .|....|.||++||          +.++.|...+..+.+++..+.   ...+..||++||.++.+..
T Consensus       233 ~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp  299 (398)
T PTZ00454        233 LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP  299 (398)
T ss_pred             HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence            34557899999999          556788888888888887653   1236679999998876644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-08
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		4e-07
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		1e-06
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-06
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		2e-06
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		2e-06
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		3e-06
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		4e-06
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		6e-06
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		7e-06
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-05
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		1e-05
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		1e-05
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-05
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		3e-05
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		5e-05
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		6e-05
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		6e-05
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		7e-05
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		8e-05
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		8e-05
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		8e-05
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		8e-05
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		1e-04
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		1e-04
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		1e-04
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		2e-04
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		2e-04
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		2e-04
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		3e-04
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		3e-04
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		3e-04
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		5e-04
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		7e-04
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		8e-04
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		9e-04

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 26/238 (10%)
Query: 26  NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
           N K  V+   + F YP    HP   +  ++   T TL  G    LVG NG+GK+T+  ++
Sbjct: 12  NMKGLVKFQDVSFAYPN---HP---NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 86  -------GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMD 138
                  GGK +++ E +        H        +    G  +R  +A+     P   +
Sbjct: 66  QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 139 VSAEKMIFG----VAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKV 194
           ++A  M  G    ++G  PQ         D ++    +++S GQR+ V +   L++  ++
Sbjct: 126 ITAVAMESGAHDFISGF-PQG-------YDTEVGETGNQLSGGQRQAVALARALIRKPRL 177
Query: 195 LLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           L+LD+ T                +  E    T++  TH    L     HI+++  G +
Sbjct: 178 LILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS-LAERAHHILFLKEGSV 234

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 25/187 (13%)
Query: 26  NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
           N K  V+   + F YP    HP   +  ++   T TL  G    LVG NG+GK+T+  ++
Sbjct: 12  NMKGLVKFQDVSFAYPN---HP---NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 86  -------GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMD 138
                  GGK +++ E +        H        +    G  +R  +A+     P   +
Sbjct: 66  QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 139 VSAEKMIFG----VAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKV 194
           ++A  M  G    ++G  PQ         D ++    +++S GQR+ V +   L++  ++
Sbjct: 126 ITAVAMESGAHDFISGF-PQG-------YDTEVGETGNQLSGGQRQAVALARALIRKPRL 177
Query: 195 LLLDEIT 201
           L+LD  T
Sbjct: 178 LILDNAT 184

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G+   +N   LT+  G+  +L+G +G GKTT L++I G  + EP      GR  F D   
Sbjct: 23  GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEP----TEGRIYFGDR-- 74
Query: 110 TSSGDLSYLGGEWRR-EVAFAGFEVPIQMDVSAEKMIFGVA-------GIDPQRR--AEL 159
               D++YL  + R   + F  + V   M V  E + F +         ID + R  AEL
Sbjct: 75  ----DVTYLPPKDRNISMVFQSYAVWPHMTVY-ENIAFPLKIKKFPKDEIDKRVRWAAEL 129
Query: 160 IKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKE 219
           +++ ++ L+    ++S GQR+RV +   ++    VLL+DE                  K 
Sbjct: 130 LQIEEL-LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 188
Query: 220 CEERGATIIYATH 232
            ++   T IY TH
Sbjct: 189 QQKLKVTTIYVTH 201

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 25/187 (13%)
Query: 26  NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
           N K  V+   + F YP    HP   +  ++   T TL  G    LVG NG+GK+T+  ++
Sbjct: 12  NMKGLVKFQDVSFAYPN---HP---NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 86  -------GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMD 138
                  GGK +++ E +        H        +    G  +R  +A+     P   +
Sbjct: 66  QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 139 VSAEKMIFG----VAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKV 194
           ++A  M  G    ++G  PQ         D ++    ++++ GQR+ V +   L++  ++
Sbjct: 126 ITAVAMESGAHDFISGF-PQG-------YDTEVGETGNQLAVGQRQAVALARALIRKPRL 177
Query: 195 LLLDEIT 201
           L+LD  T
Sbjct: 178 LILDNAT 184

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G+   +N   LT+  G+  +L+G +G GKTT L++I G  + EP      GR  F D   
Sbjct: 22  GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEP----TEGRIYFGDR-- 73
Query: 110 TSSGDLSYLGGEWRR-EVAFAGFEVPIQMDVSAEKMIFGVA-------GIDPQRR--AEL 159
               D++YL  + R   + F  + V   M V  E + F +         ID + R  AEL
Sbjct: 74  ----DVTYLPPKDRNISMVFQSYAVWPHMTVY-ENIAFPLKIKKFPKDEIDKRVRWAAEL 128
Query: 160 IKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKE 219
           +++ ++ L+    ++S GQR+RV +   ++    VLL+DE                  K 
Sbjct: 129 LQIEEL-LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 187
Query: 220 CEERGATIIYATH 232
            ++   T IY TH
Sbjct: 188 QQKLKVTTIYVTH 200

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 20/187 (10%)
Query: 23  VMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
           V+E +   VE   + FTYPG D        P + +  L + AG    LVG +G+GK+TI 
Sbjct: 334 VIERATGDVEFRNVTFTYPGRD-------VPALRNINLKIPAGKTVALVGRSGSGKSTIA 386
Query: 83  KIIG-------GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPI 135
            +I        G+ +++   ++    ++  +     S ++          +A+A  E   
Sbjct: 387 SLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYS 446
Query: 136 QMDV-SAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKV 194
           +  +  A +M + +  I+          LD  +      +S GQR+R+ I   LL+   +
Sbjct: 447 REQIEEAARMAYAMDFINKMDNG-----LDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501
Query: 195 LLLDEIT 201
           L+LDE T
Sbjct: 502 LILDEAT 508

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 35/188 (18%)
Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E   + F YP     P     P+  DF+L++ +G    LVG +G+GK+T+L ++    +
Sbjct: 373 LEFKNVHFAYPA---RP---EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL--LRL 424
Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-AEKMIFG-- 147
            +P             T      D+  L   W R       + PI    S AE + +G  
Sbjct: 425 YDPA----------SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 474
Query: 148 ----VAGIDPQRRAELIKVLDIDLSW----------RMHKVSDGQRRRVQICMGLLKPFK 193
               V   + QR AE+   +    ++          +   +S GQ++R+ I   LLK  K
Sbjct: 475 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 534
Query: 194 VLLLDEIT 201
           +LLLDE T
Sbjct: 535 ILLLDEAT 542

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 35/188 (18%)
Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E   + F YP     P     P+  DF+L++ +G    LVG +G+GK+T+L ++    +
Sbjct: 342 LEFKNVHFAYPA---RP---EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL--LRL 393
Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-AEKMIFG-- 147
            +P             T      D+  L   W R       + PI    S AE + +G  
Sbjct: 394 YDPA----------SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD 443
Query: 148 ----VAGIDPQRRAELIKVLDIDLSW----------RMHKVSDGQRRRVQICMGLLKPFK 193
               V   + QR AE+   +    ++          +   +S GQ++R+ I   LLK  K
Sbjct: 444 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPK 503
Query: 194 VLLLDEIT 201
           +LLLDE T
Sbjct: 504 ILLLDEAT 511

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 37/240 (15%)
Query: 30   TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
             V+ + + F YP     P   S P++   +L +  G    LVGS+G GK+T+++++  + 
Sbjct: 1030 NVQFSGVVFNYPT---RP---SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ER 1081
Query: 90   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-AEKMIFG- 147
              +P     +  S F D       ++  L  +W R       + PI  D S AE + +G 
Sbjct: 1082 FYDP-----MAGSVFLD-----GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131
Query: 148  ---VAGIDPQRRA-------ELIKVLDIDLSWRM----HKVSDGQRRRVQICMGLLKPFK 193
               V   +   RA       + I  L    + R+     ++S GQ++R+ I   L++   
Sbjct: 1132 NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPH 1191
Query: 194  VLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
            +LLLDE T                K  E  G T I   H    ++N    IV + +GK++
Sbjct: 1192 ILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTIQN-ADLIVVIQNGKVK 1248

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 37/240 (15%)
Query: 30   TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
             V+ + + F YP     P   S P++   +L +  G    LVGS+G GK+T+++++  + 
Sbjct: 1030 NVQFSGVVFNYPT---RP---SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ER 1081
Query: 90   MVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS-AEKMIFG- 147
              +P     +  S F D       ++  L  +W R       + PI  D S AE + +G 
Sbjct: 1082 FYDP-----MAGSVFLD-----GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGD 1131
Query: 148  ---VAGIDPQRRA-------ELIKVLDIDLSWRM----HKVSDGQRRRVQICMGLLKPFK 193
               V   +   RA       + I  L    + R+     ++S GQ++R+ I   L++   
Sbjct: 1132 NSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPH 1191
Query: 194  VLLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
            +LLLDE T                K  E  G T I   H    ++N    IV + +GK++
Sbjct: 1192 ILLLDEATSALDTESEKVVQEALDKARE--GRTCIVIAHRLSTIQN-ADLIVVIQNGKVK 1248

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 32/227 (14%)
Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    +++  + +  G+R  ++G +GAGKTT ++II G        V   G   F D  +
Sbjct: 16  GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD------VPSTGELYFDDRLV 69
Query: 110 TSSGDL------SYLG------GEWRREVAFAGFEVPI-QMDVSAEKMIFGVAGIDPQRR 156
            S+G L        +G        +    AF     P+  M +S E++         +R 
Sbjct: 70  ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI--------RKRV 121
Query: 157 AELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXX 214
            E+ K+LDI   L+    ++S GQ++RV +   L+K   +LLLDE               
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDE-PFSNLDARMRDSAR 180
Query: 215 XXXKECEER-GATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMPMD 259
              KE + R G T++  +H    +      +  +  GKL Q+  P D
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   +  D  L ++ G+  + VG +G GK+T+L++I G   +    +  +G    +DT  
Sbjct: 14  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPP 72
Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAG----IDPQRRAELIKVL 163
              G    +G      + F  + +   + V AE M FG  +AG    +  QR  ++ +VL
Sbjct: 73  AERG----VG------MVFQSYALYPHLSV-AENMSFGLKLAGAKKEVINQRVNQVAEVL 121
Query: 164 DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECE 221
            +   L  +   +S GQR+RV I   L+    V LLDE                  +  +
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 222 ERGATIIYATH 232
             G T+IY TH
Sbjct: 182 RLGRTMIYVTH 192

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 20/191 (10%)
Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   +  D  L ++ G+  + VG +G GK+T+L++I G   +    +  +G    +DT  
Sbjct: 14  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPP 72
Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAG----IDPQRRAELIKVL 163
              G    +G  ++    +    V       AE M FG  +AG    +  QR  ++ +VL
Sbjct: 73  AERG----VGMVFQSYALYPHLSV-------AENMSFGLKLAGAKKEVINQRVNQVAEVL 121
Query: 164 DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECE 221
            +   L  +   +S GQR+RV I   L+    V LLDE                  +  +
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 222 ERGATIIYATH 232
             G T+IY TH
Sbjct: 182 RLGRTMIYVTH 192

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 32/188 (17%)
Query: 28  KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
           K  + +  + FTYP     P     P++    L +NAG    LVGS+G GK+TI+ ++  
Sbjct: 413 KGDITVENVHFTYPS---RP---DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR 466
Query: 88  KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-F 146
            + V    + +       D       +L +L    R+ VA    E P   + + E+ I  
Sbjct: 467 YYDVLKGKITI-------DGVDVRDINLEFL----RKNVAVVSQE-PALFNCTIEENISL 514
Query: 147 GVAGIDPQRRAELIKVLDID-------------LSWRMHKVSDGQRRRVQICMGLLKPFK 193
           G  GI  +      K+ + +             +  R  ++S GQ++R+ I   L++  K
Sbjct: 515 GKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574
Query: 194 VLLLDEIT 201
           +LLLDE T
Sbjct: 575 ILLLDEAT 582

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 20/191 (10%)
Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G   +  D  L ++ G+  + VG +G GK+T+L++I G   +    +  +G    +DT  
Sbjct: 14  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPP 72
Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG--VAG----IDPQRRAELIKVL 163
              G    +G  ++    +    V       AE M FG  +AG    +  QR  ++ +VL
Sbjct: 73  AERG----VGMVFQSYALYPHLSV-------AENMSFGLKLAGAKKEVINQRVNQVAEVL 121
Query: 164 DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECE 221
            +   L  +   +S GQR+RV I   L+    V LLD+                  +  +
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHK 181
Query: 222 ERGATIIYATH 232
             G T+IY TH
Sbjct: 182 RLGRTMIYVTH 192

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    +++  + +  G+R  ++G +GAGKTT ++II G        V   G   F D  +
Sbjct: 16  GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD------VPSTGELYFDDRLV 69
Query: 110 TSSGDL------SYLG------GEWRREVAFAGFEVPI-QMDVSAEKMIFGVAGIDPQRR 156
            S+G L        +G        +    AF     P+  M +S E++         +R 
Sbjct: 70  ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI--------RKRV 121
Query: 157 AELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXX 214
            E+ K+LDI   L+    ++S  Q++RV +   L+K   +LLLDE               
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE-PFSNLDARMRDSAR 180
Query: 215 XXXKECEER-GATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMPMD 259
              KE + R G T++  +H    +      +  +  GKL Q+  P D
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 15/222 (6%)
Query: 38  FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
            T+  I     P S  ++++  L++  G+   +VG +G+GK+T+ K+I   ++ E   V 
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 98  VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
           + G    HD AL     L    G   ++       +   + +     S EK+I+   +AG
Sbjct: 62  IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
                 +EL +  +  +  +   +S GQR+R+ I   L+   K+L+ DE T         
Sbjct: 118 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 211 XXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
                  K C  +G T+I   H    ++N    I+ +  GK+
Sbjct: 177 VIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 215

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 15/222 (6%)
Query: 38  FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
            T+  I     P S  ++++  L++  G+   +VG +G+GK+T+ K+I   ++ E   V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 98  VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
           + G    HD AL     L    G   ++       +   + +     S EK+I+   +AG
Sbjct: 68  IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
                 +EL +  +  +  +   +S GQR+R+ I   L+   K+L+ DE T         
Sbjct: 124 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 211 XXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
                  K C  +G T+I   H    ++N    I+ +  GK+
Sbjct: 183 VIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 221

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 15/222 (6%)
Query: 38  FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
            T+  I     P S  ++++  L++  G+   +VG +G+GK+T+ K+I   ++ E   V 
Sbjct: 4   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 98  VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
           + G    HD AL     L    G   ++       +   + +     S EK+I+   +AG
Sbjct: 64  IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 119
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
                 +EL +  +  +  +   +S GQR+R+ I   L+   K+L+ DE T         
Sbjct: 120 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 211 XXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
                  K C  +G T+I   H    ++N    I+ +  GK+
Sbjct: 179 VIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 217

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 44/222 (19%)
Query: 52  TPL----INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
           TPL    + + +L +N G+  L+ G+ G+GK+T+L+I+ G  ++EP              
Sbjct: 18  TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG--LIEP-------------- 61
Query: 108 ALTSSGDLSY-----LGGEWRREVAFAGFEVPIQMDVSAEKMI----FGVAGIDPQRR-- 156
              +SGD+ Y      G E RR +  A F+ P +    AE++     F V    P R   
Sbjct: 62  ---TSGDVLYDGERKKGYEIRRNIGIA-FQYP-EDQFFAERVFDEVAFAVKNFYPDRDPV 116
Query: 157 ---AELIKVLDIDLSWRMHKV----SDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXX 209
               + ++ + +D      +V    S G++RRV I   ++    +L+LDE          
Sbjct: 117 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 176
Query: 210 XXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
                   K  +  G T+I  +H  + + N    +V +  GK
Sbjct: 177 TDLLRIVEK-WKTLGKTVILISHDIETVINHVDRVVVLEKGK 217

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 44/222 (19%)
Query: 52  TPL----INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
           TPL    + + +L +N G+  L+ G+ G+GK+T+L+I+ G  ++EP              
Sbjct: 16  TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG--LIEP-------------- 59
Query: 108 ALTSSGDLSY-----LGGEWRREVAFAGFEVPIQMDVSAEKMI----FGVAGIDPQRR-- 156
              +SGD+ Y      G E RR +  A F+ P +    AE++     F V    P R   
Sbjct: 60  ---TSGDVLYDGERKKGYEIRRNIGIA-FQYP-EDQFFAERVFDEVAFAVKNFYPDRDPV 114
Query: 157 ---AELIKVLDIDLSWRMHKV----SDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXX 209
               + ++ + +D      +V    S G++RRV I   ++    +L+LDE          
Sbjct: 115 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174
Query: 210 XXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251
                   K  +  G T+I  +H  + + N    +V +  GK
Sbjct: 175 TDLLRIVEK-WKTLGKTVILISHDIETVINHVDRVVVLEKGK 215

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 22/192 (11%)
Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G+   +N+  L +  G+   L+G +G+GK+T+L  I G  + +P      G+  F +  +
Sbjct: 14  GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG--IYKP----TSGKIYFDEKDV 67
Query: 110 TS----SGDLSYLGGEWR---REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKV 162
           T       ++  +   W        +     P+++  +  +       ID + R E+ K+
Sbjct: 68  TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE------EIDKKVR-EVAKM 120
Query: 163 LDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKEC 220
           L ID  L+    ++S GQ++RV I   L+K  +VLLLDE                  +  
Sbjct: 121 LHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180
Query: 221 EERGATIIYATH 232
           +E G T +Y TH
Sbjct: 181 KELGITTVYVTH 192

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 32/193 (16%)
Query: 23  VMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
           V++ +   +E   + FTYPG +        P + +  L + AG    LVG +G+GK+TI 
Sbjct: 334 VIDRATGDLEFRNVTFTYPGRE-------VPALRNINLKIPAGKTVALVGRSGSGKSTIA 386
Query: 83  KIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE 142
            +I   + ++   + + G    HD          Y     R +VA     V +  D  A 
Sbjct: 387 SLITRFYDIDEGHILMDG----HDLR-------EYTLASLRNQVALVSQNVHLFNDTVAN 435
Query: 143 KMIFGVAGIDPQRRAE----------LIKVLDIDLSWRMHK----VSDGQRRRVQICMGL 188
            + +       + + E           I  +D  L   + +    +S GQR+R+ I   L
Sbjct: 436 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495
Query: 189 LKPFKVLLLDEIT 201
           L+   +L+LDE T
Sbjct: 496 LRDSPILILDEAT 508

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 15/222 (6%)
Query: 38  FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
            T+  I     P S  ++++  L++  G+   +VG  G+GK+T+ K+I   ++ E   V 
Sbjct: 4   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 98  VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
           + G    HD AL     L    G   ++       +   + +     S EK+I+   +AG
Sbjct: 64  IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 119
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
                 +EL +  +  +  +   +S GQR+R+ I   L+   K+L+ DE T         
Sbjct: 120 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 211 XXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
                  K C  +G T+I   H    ++N    I+ +  GK+
Sbjct: 179 VIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 217

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 33/216 (15%)
Query: 28  KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
           K  +E   + F+Y   DG         + D + T+  G    LVG +GAGK+TIL+++  
Sbjct: 51  KGRIEFENVHFSYA--DGRET------LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR 102
Query: 88  KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG 147
            + +    +++ G+     + +T +   S++G   +  V F         D  A+ + +G
Sbjct: 103 FYDISSGCIRIDGQDI---SQVTQASLRSHIGVVPQDTVLFN--------DTIADNIRYG 151
Query: 148 --VAGIDP-QRRAELIKVLDIDLSW----------RMHKVSDGQRRRVQICMGLLKPFKV 194
              AG D  +  A+   + D  +++          R  K+S G+++RV I   +LK   +
Sbjct: 152 RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211
Query: 195 LLLDEITXXXXXXXXXXXXXXXXKECEERGATIIYA 230
           +LLDE T                K C  R  TI+ A
Sbjct: 212 ILLDEATSALDTSNERAIQASLAKVCANR-TTIVVA 246

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 36/54 (66%)
Query: 51  STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104
           +TP++ND +L+L+ G+   ++G++G GKTT+L+ + G    +   + + G++ F
Sbjct: 16  NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIF 69

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 15/222 (6%)
Query: 38  FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
            T+  I     P S  ++++  L++  G+   +VG +G+GK+T+ K+I   ++ E   V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 98  VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
           + G    HD AL     L    G   ++       +   + +     S EK+I+   +AG
Sbjct: 68  IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
                 +EL +  +  +  +   +S GQR+R+ I   L+   K+L+ D+ T         
Sbjct: 124 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEH 182
Query: 211 XXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
                  K C  +G T+I   H    ++N    I+ +  GK+
Sbjct: 183 VIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKI 221

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           + +  L +  G+   ++G +G+GK+T+L IIG        + K      + D   T+  D
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-------LDKPTEGEVYIDNIKTNDLD 73
Query: 115 LSYLGGEWRREVAFAGFE----VPI--QMDVSAEKMIF----GVAGIDPQRRA-ELIKVL 163
              L    R ++ F  F+    +P+   ++     +IF     ++G + ++RA E +K+ 
Sbjct: 74  DDELTKIRRDKIGFV-FQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA 132
Query: 164 DIDLSWRMHK---VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKEC 220
           +++  +  HK   +S GQ++RV I   L     ++L D+ T                K  
Sbjct: 133 ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN 192
Query: 221 EERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
           EE G T++  TH  + +  +   I+Y+  G+++
Sbjct: 193 EEDGKTVVVVTHDIN-VARFGERIIYLKDGEVE 224

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 18/230 (7%)
Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII----- 85
           V+   + F YP            ++   T TL  G+   LVG NG+GK+T+  ++     
Sbjct: 15  VQFQDVSFAYPNRP------DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 68
Query: 86  --GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK 143
             GG+ +++ + +        H        +    G   +  +A+   + P   +++A  
Sbjct: 69  PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 128
Query: 144 MIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXX 203
           +  G         + L +  D ++     ++S GQR+ V +   L++   VL+LD+ T  
Sbjct: 129 VKSGAHSF----ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSA 184
Query: 204 XXXXXXXXXXXXXXKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
                         +  E    +++  T     +E    HI+++  G ++
Sbjct: 185 LDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA-DHILFLEGGAIR 233

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 12/200 (6%)
Query: 38  FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
            T+  I     P S  ++++  L++  G+   +VG +G+GK+T+ K+I   ++ E   V 
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 98  VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
           + G    HD AL     L    G   ++       +   + +     S EK+I+   +AG
Sbjct: 62  IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
                 +EL +  +  +  +   +S GQR+R+ I   L+   K+L+ DE T         
Sbjct: 118 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 211 XXXXXXXKECEERGATIIYA 230
                  K C+ R   II A
Sbjct: 177 VIMRNMHKICKGRTVIIIAA 196

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 12/200 (6%)
Query: 38  FTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97
            T+  I     P S  ++++  L++  G+   +VG +G+GK+T+ K+I   ++ E   V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 98  VLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDV-----SAEKMIFG--VAG 150
           + G    HD AL     L    G   ++       +   + +     S EK+I+   +AG
Sbjct: 68  IDG----HDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123
Query: 151 IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXX 210
                 +EL +  +  +  +   +S GQR+R+ I   L+   K+L+ DE T         
Sbjct: 124 AH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 211 XXXXXXXKECEERGATIIYA 230
                  K C+ R   II A
Sbjct: 183 VIMRNMHKICKGRTVIIIAA 202

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 21/212 (9%)
Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           + +  L +  G+   ++G +G+GK+T+L IIG        + K      + D   T+  D
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-------LDKPTEGEVYIDNIKTNDLD 73
Query: 115 LSYLGGEWRREVAFAGFE---VPI--QMDVSAEKMIF----GVAGIDPQRRA-ELIKVLD 164
              L    R ++ F   +   +P+   ++     +IF     ++G + ++RA E +K+ +
Sbjct: 74  DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAE 133
Query: 165 IDLSWRMHK---VSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKECE 221
           ++  +  HK   +S GQ++RV I   L     ++L D+ T                K  E
Sbjct: 134 LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 222 ERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
           E G T++  TH  + +  +   I+Y+  G+++
Sbjct: 194 EDGKTVVVVTHDIN-VARFGERIIYLKDGEVE 224

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 25  ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
           E     V++  + FTY G +        P ++  + ++  G    LVG +G+GK+TI  +
Sbjct: 336 ERVNGEVDVKDVTFTYQGKE-------KPALSHVSFSIPQGKTVALVGRSGSGKSTIANL 388
Query: 85  IGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM 144
               + V+   + + G     D  LT+           RR  A     V +  D  A  +
Sbjct: 389 FTRFYDVDSGSICLDGHDV-RDYKLTN----------LRRHFALVSQNVHLFNDTIANNI 437
Query: 145 IFGVAGI-------DPQRRAELIKV-------LDIDLSWRMHKVSDGQRRRVQICMGLLK 190
            +   G           R+A  ++        LD  +      +S GQR+RV I   LL+
Sbjct: 438 AYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497
Query: 191 PFKVLLLDEIT 201
              VL+LDE T
Sbjct: 498 DAPVLILDEAT 508

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 23  VMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
           V    K  V++  ++F YPG        S P I D     +   R  ++G NGAGK+T++
Sbjct: 664 VKTKQKAIVKVTNMEFQYPGT-------SKPQITDINFQCSLSSRIAVIGPNGAGKSTLI 716
Query: 83  KIIGGK 88
            ++ G+
Sbjct: 717 NVLTGE 722

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 89/228 (39%), Gaps = 26/228 (11%)
Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    ++  +  +  G+   L+G +G GKTT L ++ G       + K      + D  L
Sbjct: 14  GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-------IYKPTSGEIYFDDVL 66
Query: 110 TSSGDLSYLGGEWRREV--AFAGFEVPIQMDVSAEKMIFGVAGID------PQRRAELIK 161
            +     Y      REV   F  + +   M V  E + F +           +R  E+ +
Sbjct: 67  VNDIPPKY------REVGMVFQNYALYPHMTV-FENIAFPLRARRISKDEVEKRVVEIAR 119
Query: 162 VLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITXXXXXXXXXXXXXXXXKE 219
            L ID  L  +  ++S GQ++RV +   L+K  KVLL DE                    
Sbjct: 120 KLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179
Query: 220 CEERGATIIYATHIFDGLENWPSHIVYVAHGKL-QLAMPMDKVKEASK 266
            +E G T +Y TH         S I     GKL Q   P D+V ++ K
Sbjct: 180 QQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTP-DEVYDSPK 226

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 19/179 (10%)
Query: 30  TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89
            +E + + F+YP    H    S   IN F   + +G  C LVG  G+GK+TI K++   +
Sbjct: 17  NIEFSDVNFSYPKQTNHRTLKS---INFF---IPSGTTCALVGHTGSGKSTIAKLLYRFY 70
Query: 90  MVEPEM------VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK 143
             E ++      V    R++          D        +  + +       ++D + E+
Sbjct: 71  DAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG------KLDATDEE 124
Query: 144 MIFGVAGIDPQRRAE-LIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 201
           +I            E L K  D  +  +  K+S G+R+R+ I   LLK  K+++ DE T
Sbjct: 125 VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	3e-26
1sgw_A	214	Putative ABC transporter; structural genomics, P p	7e-20
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-19
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-19
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	4e-19
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	5e-17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	9e-19
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-18
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	9e-16
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	7e-18
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	3e-16
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	6e-14
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	1e-15
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	2e-15
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-14
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	8e-08
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-07
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	4e-12
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-08
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	2e-07
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	8e-07
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	8e-07
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	9e-07
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	1e-06
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	2e-06
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	2e-06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	7e-06
2ghi_A	260	Transport protein; multidrug resistance protein, M	3e-05
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-05
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	4e-04
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	3e-05
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	5e-05
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	7e-05
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	9e-05
1ji0_A	240	ABC transporter; ATP binding protein, structural g	2e-04
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	2e-04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	2e-04
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	2e-04
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	3e-04
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	3e-04
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	4e-04
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	6e-04
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	8e-04

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  104 bits (263), Expect = 3e-26
 Identities = 52/271 (19%), Positives = 101/271 (37%), Gaps = 34/271 (12%)

Query: 14  EEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGS 73
                    V   S   ++++ +                 ++   +  +  GD+ +L G 
Sbjct: 5   HHHHHSSGLVPRGSHMLIQLDQIGRMK---------QGKTILKKISWQIAKGDKWILYGL 55

Query: 74  NGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF--AGF 131
           NGAGKTT+L I+          V + G+           G + Y     R+ + F     
Sbjct: 56  NGAGKTTLLNILNAYEPATSGTVNLFGKMP---------GKVGYSAETVRQHIGFVSHSL 106

Query: 132 EVPIQMDVSAEKMI----FGVAGI-------DPQRRAELIKVLDI-DLSWR-MHKVSDGQ 178
               Q       ++    F   G+             +L+K++ +   + + +  +S G+
Sbjct: 107 LEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGE 166

Query: 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATHIFDGL 237
           ++RV I   L+   +VL+LDE    LD +AR  LL  L    +      +IY TH  + +
Sbjct: 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEI 226

Query: 238 ENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 268
               S I+ +  G+      ++ +  +  +S
Sbjct: 227 TANFSKILLLKDGQSIQQGAVEDILTSENMS 257

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 85.6 bits (213), Expect = 7e-20
 Identities = 42/189 (22%), Positives = 86/189 (45%), Gaps = 30/189 (15%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +   T+T+  G+     G NG GKTT+LK I     ++P                   G+
Sbjct: 25  LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST--YLKP-----------------LKGE 65

Query: 115 LSYLG---GEWRREVAFAGFEVPIQMDVSAEKMIFGVAGI-----DPQRRAELIKVLDI- 165
           + Y G    + + ++ F   E+ +   +S E  +  VA +     +     + ++ +++ 
Sbjct: 66  IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL 125

Query: 166 DLSWRMHKVSDGQRRRVQICMGLL-KPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 224
           DL  ++ ++S G  RRVQ+   LL    ++ +LD+  V +D  ++  +L+ + +  +E+G
Sbjct: 126 DLKKKLGELSQGTIRRVQLASTLLVNA-EIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184

Query: 225 ATIIYATHI 233
             II +   
Sbjct: 185 IVIISSREE 193

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 37/244 (15%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           M      +++  L + Y           T  +    + +  G+   ++G NG GK+T+ +
Sbjct: 1   MSLEDYILKVEELNYNYSD--------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQ 52

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG----------FEV 133
              G  +++P      GR  F +  +  S        + R  +   G          F  
Sbjct: 53  NFNG--ILKPSS----GRILFDNKPIDYSRKGIM---KLRESI---GIVFQDPDNQLFSA 100

Query: 134 PIQMDVSAEKMIFGVAGIDPQRRA-ELIKVLDI-DLSWRM-HKVSDGQRRRVQICMGLL- 189
            +  DVS   +   +   + ++R    +K   I  L  +  H +S GQ++RV I  G+L 
Sbjct: 101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA-GVLV 159

Query: 190 -KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248
            +P KVL+LDE T  LD +  +++++ L +  +E G TII ATH  D +  +  ++  + 
Sbjct: 160 MEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMK 218

Query: 249 HGKL 252
            G++
Sbjct: 219 EGRV 222

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 85.3 bits (212), Expect = 2e-19
 Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 35/244 (14%)

Query: 20  KMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKT 79
           K+    +    V +  L+            G   ++   +  +  G+   L+G NGAGKT
Sbjct: 5   KIHHHHHHMGAVVVKDLRKRI---------GKKEILKGISFEIEEGEIFGLIGPNGAGKT 55

Query: 80  TILKIIGGKHMVEPE--MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM 137
           T L+II    +++P   +V V G++   +              E R+ +++   E     
Sbjct: 56  TTLRIIST--LIKPSSGIVTVFGKNVVEEPH------------EVRKLISYLPEEAGAYR 101

Query: 138 DVSA-EKMIF--GVAGIDPQRRAELIK-VLDI-DLSWRMHKV----SDGQRRRVQICMGL 188
           ++   E + F  G          E+++   +I  L  ++       S G  R++ I   L
Sbjct: 102 NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161

Query: 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248
           +   ++ +LDE T  LDVL   ++ + L++  +E G TI+ ++H    +E     I  + 
Sbjct: 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIH 220

Query: 249 HGKL 252
           +G +
Sbjct: 221 NGTI 224

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 23/182 (12%)

Query: 53  PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112
            ++N      +  +  +++G NG GKTT++K++ G   ++P+  + + +           
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG--ALKPDEGQDIPK----------- 412

Query: 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWR 170
            ++S       +++A   F   ++      K I G   ++PQ + +++K L ID  +   
Sbjct: 413 LNVSMK----PQKIAPK-FPGTVRQLFF--KKIRG-QFLNPQFQTDVVKPLRIDDIIDQE 464

Query: 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 230
           +  +S G+ +RV I + L  P  + L+DE +  LD   R    + +R+       T    
Sbjct: 465 VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIV 524

Query: 231 TH 232
            H
Sbjct: 525 EH 526

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 81.2 bits (201), Expect = 5e-17
 Identities = 41/205 (20%), Positives = 71/205 (34%), Gaps = 35/205 (17%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII-------GGKHMVEPEMVKVLGRS 102
            +         T   G    LVG+NG GK+T LKI+        G+    PE  +++   
Sbjct: 88  SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147

Query: 103 AFHDTALTSSGDLS-------------YLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA 149
              +     +  L               +    +  V   G      + +  EK      
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGE----LLKLRMEKSP---- 199

Query: 150 GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL 207
               +     IK+L ++  L   + K+S G+ +R  I M  ++   V + DE +  LDV 
Sbjct: 200 ----EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK 255

Query: 208 ARADLLRFLRKECEERGATIIYATH 232
            R +  + +R         +I   H
Sbjct: 256 QRLNAAQIIR-SLLAPTKYVICVEH 279

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 86.2 bits (214), Expect = 9e-19
 Identities = 52/259 (20%), Positives = 94/259 (36%), Gaps = 26/259 (10%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    +      +  G    +VG NG GKTT +KI+ G+  + P + +          A 
Sbjct: 102 GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQ--LIPNLCEDNDSWDNVIRAF 159

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA--GIDP----QRRAELIKVL 163
             +   +Y       E+      V  Q      K + G     +       +  E++K L
Sbjct: 160 RGNELQNYFERLKNGEIRPV---VKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKEL 216

Query: 164 DID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE 221
           +++  L   +H++S G+ +RV I   LL+       DE +  LD+  R  + R +R    
Sbjct: 217 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR-RLA 275

Query: 222 ERGATIIYATH---IFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTVESWLR 278
             G  ++   H   + D L +   H+VY   G   +       +          +  +L+
Sbjct: 276 NEGKAVLVVEHDLAVLDYLSDV-IHVVYGEPGVYGIFSKPKGTRNG--------INEFLQ 326

Query: 279 KERDEERKRRRERKASGLP 297
               +E  R R  +     
Sbjct: 327 GYLKDENVRFRPYEIRFTK 345

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 43/182 (23%), Positives = 68/182 (37%), Gaps = 27/182 (14%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +      +  G+   +VG NG GKTT +K++ G        V+     A+          
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP----QYIK 427

Query: 115 LSYLG--GEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-LSWR- 170
             Y G   E   ++  +                          + EL+K L I  L  R 
Sbjct: 428 AEYEGTVYELLSKIDSSKLN-------------------SNFYKTELLKPLGIIDLYDRN 468

Query: 171 MHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYA 230
           +  +S G+ +RV I   LL+   + LLDE +  LDV  R  + R +R   E+   T +  
Sbjct: 469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528

Query: 231 TH 232
            H
Sbjct: 529 EH 530

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 31/223 (13%)

Query: 12  KTEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLV 71
           K   +E   + + ++ K  ++   +                  +         G+   ++
Sbjct: 251 KFMLKEVSDLDLSKDLKTKMKWTKIIKKLGD----------FQLVVDNGEAKEGEIIGIL 300

Query: 72  GSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131
           G NG GKTT  +I+ G   +  +     G              LSY     + +  F  +
Sbjct: 301 GPNGIGKTTFARILVG--EITADE----GSVTPEKQ------ILSY-----KPQRIFPNY 343

Query: 132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-DLSWR-MHKVSDGQRRRVQICMGLL 189
           +  +Q  +  E               E+ K L++  L    ++ +S G+ +++ I   L 
Sbjct: 344 DGTVQQYL--ENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLA 401

Query: 190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           K   + +LD+ +  LDV  R  + + +++   ER A      H
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 77.0 bits (190), Expect = 9e-16
 Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 33/190 (17%)

Query: 61  TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGG 120
           T        ++G NG GKTT+LKI+ G+  + P      G     ++ +     L    G
Sbjct: 21  TPKNNTILGVLGKNGVGKTTVLKILAGE--IIPN----FGD---PNSKVGKDEVLKRFRG 71

Query: 121 EWRREVAFAGFEVP----------IQMDVSAEKMIFGV--AGIDP----QRRAELIKVLD 164
              +E+    F+            IQ    A K + G     +       ++ E+ ++L+
Sbjct: 72  ---KEIYNY-FKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN 127

Query: 165 ID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 222
           +    +   + +S G  +R+ +   LL+   V + D+ +  LDV  R ++ + +R+  + 
Sbjct: 128 MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKN 187

Query: 223 RGATIIYATH 232
           +   +I   H
Sbjct: 188 K--YVIVVDH 195

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 81.2 bits (201), Expect = 7e-18
 Identities = 49/243 (20%), Positives = 95/243 (39%), Gaps = 46/243 (18%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +++  +  T  G            + +  L +N G++ +++G NG+GKTT+L+ I G   
Sbjct: 2   IQLKNVGITLSG-----KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG--- 52

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGE-------WRREVAFAGFEVPIQMDVSAEK 143
           + P                  SG++ ++ G        + R          I + V  + 
Sbjct: 53  LLP-----------------YSGNI-FINGMEVRKIRNYIRYSTNLPEAYEIGVTV-NDI 93

Query: 144 MIFG--VAGIDPQRRAELIKVLDID--LSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLD 198
           +     + G+D     E++K L +   +  R  +K+S GQ   V+  + L    +++ LD
Sbjct: 94  VYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD 153

Query: 199 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL--QLAM 256
           E   ++D   R  + R+++    E G   I  TH  D L  +  +  Y   G        
Sbjct: 154 EPFENVDAARRHVISRYIK----EYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPIS 209

Query: 257 PMD 259
             +
Sbjct: 210 VSE 212

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 26/197 (13%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    +      +  G    +VG NG GK+T +KI+ G+  + P                
Sbjct: 32  GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQ--LIPN---------LCGDND 80

Query: 110 TSSGDLSYLGG------EWRREVAFAGFEVPIQMDVSAEKMIFG--VAGIDP----QRRA 157
           +  G +    G        + +       V  Q      K + G  +  +       +  
Sbjct: 81  SWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE 140

Query: 158 ELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 215
           E++K L+++  L   +  +S G+ +RV I   LL+       DE +  LD+  R +  R 
Sbjct: 141 EVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARA 200

Query: 216 LRKECEERGATIIYATH 232
           +R    E G +++   H
Sbjct: 201 IR-RLSEEGKSVLVVEH 216

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 44/220 (20%), Positives = 79/220 (35%), Gaps = 33/220 (15%)

Query: 15  EEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSN 74
           +  +    V    +  V    L   Y              +      +  G+   +VG N
Sbjct: 272 KFTKTGERVEIERETLVTYPRLVKDYGS----------FRLEVEPGEIKKGEVIGIVGPN 321

Query: 75  GAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP 134
           G GKTT +K++ G        ++     A+    + +  + +    E   ++  +     
Sbjct: 322 GIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGT--VYELLSKIDASKLN-- 377

Query: 135 IQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-LSWR-MHKVSDGQRRRVQICMGLLKPF 192
                                + EL+K L I  L  R ++++S G+ +RV I   LL+  
Sbjct: 378 -----------------SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA 420

Query: 193 KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
            + LLDE +  LDV  R  + R +R   E+   T +   H
Sbjct: 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 460

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 60/290 (20%), Positives = 111/290 (38%), Gaps = 62/290 (21%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +E+  +   +    G   P     + + +L +N G+  L+ G+ G+GK+T+L+I+ G  +
Sbjct: 3   IEVVNVSHIFH--RG--TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG--L 56

Query: 91  VEPEM--VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG- 147
           +EP    V   G                    E RR +  A F+ P       E   F  
Sbjct: 57  IEPTSGDVLYDGE----RKKGY----------EIRRNIGIA-FQYP-------EDQFFAE 94

Query: 148 -----VA------GIDP---QRRAELIKVLDIDLSWRM----HKVSDGQRRRVQICMGLL 189
                VA        D        + ++ + +D           +S G++RRV I   ++
Sbjct: 95  RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA-SVI 153

Query: 190 --KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247
             +P  +L+LDE  V LD   + DLLR + K  +  G T+I  +H  + + N    +V +
Sbjct: 154 VHEP-DILILDEPLVGLDREGKTDLLRIVEK-WKTLGKTVILISHDIETVINHVDRVVVL 211

Query: 248 AHGKLQLAMPMDKVKEASKLSLMRTVESWLRKERDEERKRRRERKASGLP 297
             GK         V + +++  +   +      +    +R   +      
Sbjct: 212 EKGKK--------VFDGTRMEFLEKYDPRFFTSKMLVMRRLVLKGEDPFS 253

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 37/214 (17%)

Query: 28  KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87
              + +  L F Y             L       LN GD   ++G NG GK+T+L ++ G
Sbjct: 2   NKALSVENLGFYYQA--------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53

Query: 88  KHMVEPE--MVKVLGRSAF----HDTAL-TSSGDLSYLGGEWRREVAFAGFEVPIQMDVS 140
             +  P    ++V     F      +    S  D+  +G    R      F  P      
Sbjct: 54  --IHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMG----RSTHINTFAKP-----K 102

Query: 141 AEKMIFGVAGIDPQRRAELIKVLDI-DLSWR-MHKVSDGQRRRVQICMGLLKPFKVLLLD 198
           +          D Q   + +  L++  L+ R    +S GQR+ + I   +    K++LLD
Sbjct: 103 SH---------DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD 153

Query: 199 EITVDLDVLARADLLRFLRKECEERGATIIYATH 232
           E T  LD+  +  +L  L    + +  T+++ TH
Sbjct: 154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 72.4 bits (177), Expect = 5e-14
 Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 31/206 (15%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH---MVEPEMVKVLGRSAFHD 106
           G+  L+N   L L    R  + G NG GK+T+++ I           E  + +      D
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDID 505

Query: 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID 166
              + +  L ++            FE  +    + +  +    G   +  A  I  L   
Sbjct: 506 GTHSDTSVLDFV------------FESGVGTKEAIKDKLIEF-GFTDEMIAMPISAL--- 549

Query: 167 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 226
                   S G + ++ +   +L+   +LLLDE T  LD +  A L+ +L       G T
Sbjct: 550 --------SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGIT 597

Query: 227 IIYATHIFDGLENWPSHIVYVAHGKL 252
            I  +H    L+N   +I+     KL
Sbjct: 598 SITISHDSVFLDNVCEYIINYEGLKL 623

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 53.1 bits (127), Expect = 8e-08
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 164 DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 223
           +I    R+  +S GQ+ ++ +  G  +   +++LDE T  LD  +   L + L+    E 
Sbjct: 892 EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK----EF 947

Query: 224 GATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
              +I  TH  +  +N    +  V  G++ 
Sbjct: 948 EGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 10  FHKTEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCL 69
                 E      V    K  V++  ++F YPG          P I D     +   R  
Sbjct: 651 LEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTS-------KPQITDINFQCSLSSRIA 703

Query: 70  LVGSNGAGKTTILKIIGGK 88
           ++G NGAGK+T++ ++ G+
Sbjct: 704 VIGPNGAGKSTLINVLTGE 722

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 64.1 bits (157), Expect = 4e-12
 Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 30/197 (15%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
             +  +   +  + AG+   LVG NGAGK+T+L  + G       M    G   F    L
Sbjct: 11  AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-------MTSGKGSIQFAGQPL 63

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA-GIDPQRRAELI----KVLD 164
                 ++   +     A+   +               +      + R EL+      L 
Sbjct: 64  E-----AWSATKLALHRAYLSQQQTPPFATPVWHY---LTLHQHDKTRTELLNDVAGALA 115

Query: 165 I-DLSWRM-HKVSDGQRRRVQICMGLL-------KPFKVLLLDEITVDLDVLARADLLRF 215
           + D   R  +++S G+ +RV++   +L          ++LLLDE    LDV  ++ L + 
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175

Query: 216 LRKECEERGATIIYATH 232
           L    ++ G  I+ ++H
Sbjct: 176 LSALSQQ-GLAIVMSSH 191

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 45/197 (22%)

Query: 57  DFTLTLN---AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG 113
           +F L ++     D C+L+G  GAGK+  L++I G  +V+P                   G
Sbjct: 13  NFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAG--IVKP-----------------DRG 53

Query: 114 DLSYLGGE-------WRREVAF-----AGFEVPIQMDVSAEKMIFGVAGIDP----QRRA 157
           ++  L G         RR + F     A F  P  + V    + +G+  ++     +R  
Sbjct: 54  EV-RLNGADITPLPPERRGIGFVPQDYALF--P-HLSV-YRNIAYGLRNVERVERDRRVR 108

Query: 158 ELIKVLDI-DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF 215
           E+ + L I  L  R   ++S G+R+RV +   L+   ++LLLDE    +D+  +  L+  
Sbjct: 109 EMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE 168

Query: 216 LRKECEERGATIIYATH 232
           LR    E    I++ TH
Sbjct: 169 LRFVQREFDVPILHVTH 185

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 54/228 (23%)

Query: 26  NSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
           +   T+E   ++  YPG            +   +  +  G+   L+G +G+GKTTIL++I
Sbjct: 10  HGSMTIEFVGVEKIYPG--------GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLI 61

Query: 86  GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGE-------WRREVAF-----AGFEV 133
            G  +  P                 + GD+ ++GG+        +R V       A F  
Sbjct: 62  AG--LERP-----------------TKGDV-WIGGKRVTDLPPQKRNVGLVFQNYALF-- 99

Query: 134 PIQMDVSAEKMIFG--VAGIDPQRRAELIK-VLD-IDLSW---RM-HKVSDGQRRRVQIC 185
              M V  + + FG     +        ++ +L  + L     R  H++S GQ++RV + 
Sbjct: 100 Q-HMTV-YDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157

Query: 186 MGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
             L  +P +VLL DE    +D   R +L  F+R+  +E G T ++ TH
Sbjct: 158 RALAPRP-QVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH 204

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 43/207 (20%)

Query: 48  PPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107
             G    +++  + +  G+R  ++G +GAGKTT ++II G  +                 
Sbjct: 14  KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---------------- 57

Query: 108 ALTSSGDLSYLGGE------------WRREVA--FAGFEVPIQMDVSAEKMIFG--VAGI 151
              S+G+L Y                  R++   F  + +   +    E + F      +
Sbjct: 58  ---STGEL-YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA-FENIAFPLTNMKM 112

Query: 152 DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 205
                 +R  E+ K+LDI   L+    ++S  Q++RV +   L+K   +LLLDE   +LD
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172

Query: 206 VLARADLLRFLRKECEERGATIIYATH 232
              R      +++     G T++  +H
Sbjct: 173 ARMRDSARALVKEVQSRLGVTLLVVSH 199

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 43/208 (20%), Positives = 88/208 (42%), Gaps = 50/208 (24%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
            +TP++ND +L+L+ G+   ++G++G GKTT+L+ + G    +P                
Sbjct: 15  QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG--FEQP---------------- 56

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQ----------------MDVSAEKMIFG--VAGI 151
             SG++  L G   + +      +P++                + V    + +G      
Sbjct: 57  -DSGEI-SLSG---KTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV-YRNIAYGLGNGKG 110

Query: 152 DPQRRAELIK-VLD-IDLSW---RM-HKVSDGQRRRVQICMGL-LKPFKVLLLDEITVDL 204
              +  + I+ +L+   +S    R  H++S GQ++R  +   L   P +++LLDE    L
Sbjct: 111 RTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP-ELILLDEPFSAL 169

Query: 205 DVLARADLLRFLRKECEERGATIIYATH 232
           D   R  +   +       G + ++ +H
Sbjct: 170 DEQLRRQIREDMIAALRANGKSAVFVSH 197

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 49.5 bits (119), Expect = 8e-07
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 13  TEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVG 72
            E E +      E     V++  + FTY G +        P ++  + ++  G    LVG
Sbjct: 324 LETERDNGKYEAERVNGEVDVKDVTFTYQGKE-------KPALSHVSFSIPQGKTVALVG 376

Query: 73  SNGAGKTTILKII 85
            +G+GK+TI  + 
Sbjct: 377 RSGSGKSTIANLF 389

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 13  TEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVG 72
           +E+E++    V++ +   +E   + FTYPG +        P + +  L + AG    LVG
Sbjct: 324 SEQEKDEGKRVIDRATGDLEFRNVTFTYPGRE-------VPALRNINLKIPAGKTVALVG 376

Query: 73  SNGAGKTTILKII 85
            +G+GK+TI  +I
Sbjct: 377 RSGSGKSTIASLI 389

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 58/209 (27%)

Query: 56  NDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-------GKHMVEPEMVKVLGRSAFHDTA 108
            +  L +  G+   ++G +G+GK+T+L IIG       G+  ++      L         
Sbjct: 22  KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDL--------- 72

Query: 109 LTSSGDLSYLGGEWRREVAFAGF-----------------EVPIQMDVSAEKMIF-GVAG 150
                +L+ +    RR+    GF                 E+P         +IF     
Sbjct: 73  --DDDELTKI----RRD--KIGFVFQQFNLIPLLTALENVELP---------LIFKYRGA 115

Query: 151 IDPQRRAEL-IKVLD-IDLSWRM--HK---VSDGQRRRVQICMGLLKPFKVLLLDEITVD 203
           +  + R +  ++ L   +L  R   HK   +S GQ++RV I   L     ++L D+ T  
Sbjct: 116 MSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWA 175

Query: 204 LDVLARADLLRFLRKECEERGATIIYATH 232
           LD      +++ L+K  EE G T++  TH
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 14  EEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGS 73
           EE+++     +   +  +E   + F+Y            P++ D T  +  G +  LVG 
Sbjct: 338 EEKDDPDAVELREVRGEIEFKNVWFSYDK--------KKPVLKDITFHIKPGQKVALVGP 389

Query: 74  NGAGKTTILKII 85
            G+GKTTI+ ++
Sbjct: 390 TGSGKTTIVNLL 401

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 41/195 (21%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +++ +L + +G+  +++G  GAGKT  L++I G     P                  SG 
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVP-----------------DSGR 56

Query: 115 LSYLGGE-------WRREVAF-----AGFEVPIQMDVSAEKMIFG--VAGID-PQRRAEL 159
           +  L G+        + ++AF     + F  P  M+V  + + FG  +  I  P+R  + 
Sbjct: 57  I-LLDGKDVTDLSPEKHDIAFVYQNYSLF--P-HMNV-KKNLEFGMRMKKIKDPKRVLDT 111

Query: 160 IKVLDI-DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 217
            + L I  L  R    +S G+++RV +   L+   K+LLLDE    LD   + +    L 
Sbjct: 112 ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171

Query: 218 KECEERGATIIYATH 232
              ++   T+++ TH
Sbjct: 172 VLHKKNKLTVLHITH 186

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 46.4 bits (111), Expect = 7e-06
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 14  EEEEERKMAV-MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVG 72
            + +    A  +E  +  ++I+ + F Y            P++ D  L++  G+    VG
Sbjct: 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYN-------DNEAPILKDINLSIEKGETVAFVG 374

Query: 73  SNGAGKTTILKII 85
            +G GK+T++ +I
Sbjct: 375 MSGGGKSTLINLI 387

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
          +     +E + + F+YP    H        +      + +G  C LVG  G+GK+TI K+
Sbjct: 12 KKFGVNIEFSDVNFSYPKQTNHR------TLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65

Query: 85 I 85
          +
Sbjct: 66 L 66

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 25   ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
               +  V+ + + F YP     P   S P++   +L +  G    LVGS+G GK+T++++
Sbjct: 1025 NMLEGNVQFSGVVFNYPT---RP---SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQL 1078

Query: 85   I 85
            +
Sbjct: 1079 L 1079

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 23  VMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
             +N +  +E   + F+YP            ++    L + +G    LVG++G GK+T +
Sbjct: 380 KPDNIQGNLEFKNIHFSYPS---RK---EVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433

Query: 83  KII 85
           +++
Sbjct: 434 QLM 436

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
          +    ++F Y        P S  ++++  L++  G+   +VG +G+GK+T+ K+I
Sbjct: 8  ITFRNIRFRYK-------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 59/207 (28%)

Query: 56  NDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-------GKHMVEPEMVKVLGRSAFHDTA 108
              +L++  G+   ++G++G+GK+T+L I+G       GK  +E + V            
Sbjct: 21  KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYT--------- 71

Query: 109 LTSSGDLSYLGGEWRREVAFAGF-----------------EVPIQMDVSAEKMIFGVAGI 151
             +  +LS L    R      GF                  VP         M+    G 
Sbjct: 72  --NEKELSLL----RNR--KLGFVFQFHYLIPELTALENVIVP---------MLK--MGK 112

Query: 152 DP-QRRAELIKVLD-IDLSWRMH----KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 205
              + +     +L  + L  ++     ++S G+++RV I   L     +L  DE T +LD
Sbjct: 113 PKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172

Query: 206 VLARADLLRFLRKECEERGATIIYATH 232
                 ++     +  E G +I+  TH
Sbjct: 173 SANTKRVMDIF-LKINEGGTSIVMVTH 198

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 25 ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
           N K  V+   + F YP    HP   +  ++   T TL  G    LVG NG+GK+T+  +
Sbjct: 11 LNMKGLVKFQDVSFAYPN---HP---NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64

Query: 85 I 85
          +
Sbjct: 65 L 65

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 60/211 (28%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G+   +N+  L +  G+   L+G +G+GK+T+L  I G   +                  
Sbjct: 14  GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG---IYK---------------- 54

Query: 110 TSSGDLSYLGGEW-------RREVA--FAGFEVPIQ-------MDVSAEKMIFG--VAGI 151
            +SG + Y   +         R V   F       Q       M V  + + F   +   
Sbjct: 55  PTSGKI-YFDEKDVTELPPKDRNVGLVF-------QNWALYPHMTV-YKNIAFPLELRKA 105

Query: 152 DP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 205
                 ++  E+ K+L ID  L+    ++S GQ++RV I   L+K  +VLLLDE   +LD
Sbjct: 106 PREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165

Query: 206 ----VLARADLLRFLRKECEERGATIIYATH 232
               +  RA+L R L+KE    G T +Y TH
Sbjct: 166 ALLRLEVRAELKR-LQKEL---GITTVYVTH 192

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
          S   +E+ +L   Y         G+   I    L +  G    L+G+NGAGKTT L  I 
Sbjct: 3  SDIVLEVQSLHVYY---------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA 53

Query: 87 G 87
          G
Sbjct: 54 G 54

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 48/244 (19%)

Query: 11  HKTEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLL 70
           H           + ++ K  ++++ +   +          +   +N+ +L + AG    +
Sbjct: 5   HHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQ-----GTRTIQALNNVSLHVPAGQIYGV 59

Query: 71  VGSNGAGKTTILKII-------GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGG--- 120
           +G++GAGK+T+++ +        G        V V G+            +L+ L     
Sbjct: 60  IGASGAGKSTLIRCVNLLERPTEGS-------VLVDGQ------------ELTTLSESEL 100

Query: 121 -EWRREVA--FAGFEVPIQMDVSAEKMIFG--VAGID-PQRRAELIKVLDI-DLSWRMHK 173
            + RR++   F  F +     V    +     +      + +  + ++L +  L  +   
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTV-FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159

Query: 174 ----VSDGQRRRVQICMGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 228
               +S GQ++RV I   L   P KVLL D+ T  LD      +L  L+      G TI+
Sbjct: 160 YPSNLSGGQKQRVAIARALASNP-KVLLCDQATSALDPATTRSILELLKDINRRLGLTIL 218

Query: 229 YATH 232
             TH
Sbjct: 219 LITH 222

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 66/215 (30%)

Query: 49  PGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108
            G    ++  +  +  G+   L+G +G GKTT L ++ G   +                 
Sbjct: 13  FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG---IYK--------------- 54

Query: 109 LTSSGDLSYLGGEW-------RREVA--FAGFEVPIQ-------MDVSAEKMIFG--VAG 150
             +SG++ Y             REV   F       Q       M V  E + F      
Sbjct: 55  -PTSGEI-YFDDVLVNDIPPKYREVGMVF-------QNYALYPHMTV-FENIAFPLRARR 104

Query: 151 IDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMG---LLKPFKVLLLDEIT 201
           I      +R  E+ + L ID  L  +  ++S GQ++RV   +    + +P KVLL DE  
Sbjct: 105 ISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRV--ALARALVKQP-KVLLFDEPL 161

Query: 202 VDLD----VLARADLLRFLRKECEERGATIIYATH 232
            +LD    ++ RA++   L++E    G T +Y TH
Sbjct: 162 SNLDANLRMIMRAEIKH-LQQEL---GITSVYVTH 192

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 8/55 (14%)

Query: 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII 85
          +    + F Y          S  ++ D +            G +G GK+TI  ++
Sbjct: 2  LSARHVDFAYDD--------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 175 SDGQRRRVQICM------GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATII 228
           S G+R  + +         L     +L+LDE T  LD   R  L+  +     ++   +I
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIME-RYLKKIPQVI 308

Query: 229 YATHIFDGLENWPSHIVYV 247
             +H  + L++   H++ +
Sbjct: 309 LVSHD-EELKDAADHVIRI 326

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 82/247 (33%)

Query: 17  EERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGA 76
           E  KM         V++  L   +         G+   +N   LT+  G+  +L+G +G 
Sbjct: 5   EVIKMV-------EVKLENLTKRF---------GNFTAVNKLNLTIKDGEFLVLLGPSGC 48

Query: 77  GKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW-------RREVA-- 127
           GKTT L++I G   +E                  + G + Y G           R ++  
Sbjct: 49  GKTTTLRMIAG---LEE----------------PTEGRI-YFGDRDVTYLPPKDRNISMV 88

Query: 128 FAGFEVPIQ-------MDVSAEKMIFG--VAGIDP----QRRAELIKVLDID--LSWRMH 172
           F       Q       M V  E + F   +         +R     ++L I+  L+    
Sbjct: 89  F-------QSYAVWPHMTV-YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA 140

Query: 173 KVSDGQRRRVQICMG---LLKPFKVLLLDEITVDLD----VLARADLLRFLRKECEERGA 225
           ++S GQR+RV   +    +++P  VLL+DE   +LD    V  RA++ + L+++      
Sbjct: 141 QLSGGQRQRV--AVARAIVVEP-DVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKL---KV 193

Query: 226 TIIYATH 232
           T IY TH
Sbjct: 194 TTIYVTH 200

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 64/216 (29%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    + + +L +  G+  +L+G +G GKTT L++I G   +E                 
Sbjct: 14  GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG---LEE---------------- 54

Query: 110 TSSGDLSYLGGEWRREVAFAGFEVPIQ------------------MDVSAEKMIFG--VA 149
            S G + Y+G    + VA     + +                   M V  + + F   + 
Sbjct: 55  PSRGQI-YIGD---KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTV-YDNIAFPLKLR 109

Query: 150 GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMG---LLKPFKVLLLDEI 200
            +      QR  E+ ++L +   L+ +  ++S GQR+RV   +G   + KP +V L+DE 
Sbjct: 110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRV--ALGRAIVRKP-QVFLMDEP 166

Query: 201 TVDLD----VLARADLLRFLRKECEERGATIIYATH 232
             +LD    V  RA+L + L+++    G T IY TH
Sbjct: 167 LSNLDAKLRVRMRAELKK-LQRQL---GVTTIYVTH 198

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 50/225 (22%), Positives = 79/225 (35%), Gaps = 58/225 (25%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
           +   V +  +   +         G TP++ D    +  G    + GS GAGKT++L +I 
Sbjct: 3   TTTEVVMENVTAFWE-------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 55

Query: 87  GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGE-WRREVAFAGFEVPIQMDVSAEKMI 145
           G      E+    G+           G +S+     W            I      E +I
Sbjct: 56  G------ELEPSEGKIKHS-------GRISFCSQFSW------------IMPGTIKENII 90

Query: 146 FGVAGIDPQRRAELIKV--LDIDLSWRMHK-----------VSDGQRRRVQICMGLLKPF 192
           FGV+  D  R   +IK   L+ D+S    K           +S GQR R+ +   + K  
Sbjct: 91  FGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149

Query: 193 KVLLLDEITVDLDVLARADLL--RFLRKEC---EERGATIIYATH 232
            + LLD            D+L  + + + C        T I  T 
Sbjct: 150 DLYLLD------SPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 64/211 (30%)

Query: 163 LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR--FLRKEC 220
           +D +     ++  D           +L  F     D    + D     D+ +    ++E 
Sbjct: 7   MDFETGEHQYQYKD-----------ILSVF----EDAFVDNFDCKDVQDMPKSILSKEEI 51

Query: 221 EERGATIIYATH-------IFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLSLMRTV 273
           +     II +         +F  L +    +V               V+E  +++    +
Sbjct: 52  DH----IIMSKDAVSGTLRLFWTLLSKQEEMVQKF------------VEEVLRINYKFLM 95

Query: 274 ESWLRKERDEERKRR-----RERKASGLPEFDKQIHGSRVTGDPA----QAAVRVMNNGW 324
                ++R      R     R+R  +    F K  + SR+   P     QA + +     
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRL--QPYLKLRQALLELRPAKN 152

Query: 325 AAGRLH-------STVAGEENFVLSTNRVLR 348
               +        + VA +   V  + +V  
Sbjct: 153 VL--IDGVLGSGKTWVALD---VCLSYKVQC 178

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 53/272 (19%), Positives = 94/272 (34%), Gaps = 61/272 (22%)

Query: 1   MICIADITPFHKTEEEEERKMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTL 60
            + + ++T F +    E  + A   N+           ++     +     TP++ D   
Sbjct: 4   EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSF----SNFSLLGTPVLKDINF 59

Query: 61  TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGG 120
            +  G    + GS GAGKT++L +I G      E+    G+           G +S+   
Sbjct: 60  KIERGQLLAVAGSTGAGKTSLLMMIMG------ELEPSEGKIKHS-------GRISF--- 103

Query: 121 EWRREVAFAGFEVPIQ---MDVSAEKMIFGVAGIDPQRRAELIKV--LDIDLSWRMHK-- 173
                              M  + ++ I GV+  D  R   +IK   L+ D+S    K  
Sbjct: 104 ------------CSQNSWIMPGTIKENIIGVS-YDEYRYRSVIKACQLEEDISKFAEKDN 150

Query: 174 ---------VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL--RFLRKEC-- 220
                    +S GQR R+ +   + K   + LLD            D+L  + + + C  
Sbjct: 151 IVLGEGGITLSGGQRARISLARAVYKDADLYLLD------SPFGYLDVLTEKEIFESCVC 204

Query: 221 -EERGATIIYATHIFDGLENWPSHIVYVAHGK 251
                 T I  T   + L+     I+ +  G 
Sbjct: 205 KLMANKTRILVTSKMEHLKK-ADKILILHEGS 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.98
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.97
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.96
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.96
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.95
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.94
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.93
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.93
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.92
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.92
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.91
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.91
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.91
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.91
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.9
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.9
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.9
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.89
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.89
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.89
2og2_A	359	Putative signal recognition particle receptor; nuc	99.88
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.88
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.88
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.87
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.87
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.86
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.86
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.85
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.85
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.84
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.83
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.83
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.83
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.83
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.83
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.83
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.82
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.79
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.79
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.78
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.78
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.77
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.77
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.76
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.74
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.74
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.73
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.73
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.71
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.69
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.67
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.66
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.63
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.6
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.6
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.59
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.58
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.56
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.55
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.54
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.51
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.5
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.5
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.49
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.48
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.47
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.45
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.45
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.43
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.42
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.4
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.38
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.38
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.37
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.35
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.33
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.31
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.31
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.31
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.3
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.3
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.29
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.26
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.26
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.25
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.24
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.21
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.21
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.18
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.14
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.94
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.9
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.89
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.89
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.88
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.87
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.87
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.81
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.79
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.76
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.75
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.71
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.69
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.67
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.65
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.63
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.62
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.61
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.56
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.56
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.53
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.53
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.51
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.49
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.47
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.39
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.39
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.34
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.34
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.33
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.32
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.3
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.27
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.25
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.24
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.23
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.23
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.21
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.21
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.2
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.2
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.2
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.18
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.14
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.12
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.07
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.03
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.02
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.02
3ice_A	422	Transcription termination factor RHO; transcriptio	98.01
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.99
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.98
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.93
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.88
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.87
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.86
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.83
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.8
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.79
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.75
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.75
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.73
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.69
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.67
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.67
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.67
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.65
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.65
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.61
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.58
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.58
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.57
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.56
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.56
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.56
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.55
3io5_A	333	Recombination and repair protein; storage dimer, i	97.53
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.51
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.5
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.48
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.46
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.43
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.4
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.39
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.36
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.34
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.34
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.32
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.31
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.29
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.28
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.26
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.26
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.25
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.25
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.14
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.14
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.11
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.11
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.11
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.06
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.04
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.03
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.02
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.98
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.97
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.96
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.94
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.94
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.9
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.89
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.88
1via_A	175	Shikimate kinase; structural genomics, transferase	96.88
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.87
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.86
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.85
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.84
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.83
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.82
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.81
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.78
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.77
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.76
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.75
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.74
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.74
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.73
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.73
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.71
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.71
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.67
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.65
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.63
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.62
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.61
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.59
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.59
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.58
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.56
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.51
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.5
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.5
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.48
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.46
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.45
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.44
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.42
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.42
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.42
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.42
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.41
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.41
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.39
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.38
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.36
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.36
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.34
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.33
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.33
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.33
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.32
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.32
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.32
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.3
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.29
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.29
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.29
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.29
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.28
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.27
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.26
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.26
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.24
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.24
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.24
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.22
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.22
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.2
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.19
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.19
3bos_A	242	Putative DNA replication factor; P-loop containing	96.19
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.18
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.16
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.16
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.15
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.14
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.13
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.13
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.13
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.13
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.12
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.12
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.11
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.1
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.09
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.09
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.08
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.04
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.04
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.03
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.03
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.03
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.03
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.03
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.02
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.01
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.01
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.99
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.99
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.98
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.98
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.96
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.96
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.96
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.95
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.93
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.93
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	95.92
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.92
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.88
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.87
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.86
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.86
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.85
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.85
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.84
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.84
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.84
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.82
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.81
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.81
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.81
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.81
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.81
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.8
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.79
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.79
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.79
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.78
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.78
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.77
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.77
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.77
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.76
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.75
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.75
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.74
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.74
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.73
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.72
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.7
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.69
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.68
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.68
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.67
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.67
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.66
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.66
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.66
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.65
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.62
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.62
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.61
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.61
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.59
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.59
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.59
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.58
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.58
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.58
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.56
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.56
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.55
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.55
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.54
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.52
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.52
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.52
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.52
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.51
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.51
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.5
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.5
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.49
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.48
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.48
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.47
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.45
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.45
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.45
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.44
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.44
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.42
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.4
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.4
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.39
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.35
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.31
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.31
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.29
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.23
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.22
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.18
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.18
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.12
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.11
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.07
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.04
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.98
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.97
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	94.95
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.91
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.9
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.82
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.71
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	94.71
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.69
1wxq_A	397	GTP-binding protein; structural genomics, riken st	94.6
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.55
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.54
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.43
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.4
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	94.38
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.36
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	94.29
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.32
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	94.28
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	94.26
2qgz_A	308	Helicase loader, putative primosome component; str	94.26
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.2
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	94.12
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	94.09
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.08
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	94.04
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	94.0

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=9.6e-54  Score=409.51  Aligned_cols=229  Identities=21%  Similarity=0.257  Sum_probs=189.8

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||+|+|+...     +...+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus        22 ~~mi~v~~ls~~y~~~~-----~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~   96 (366)
T 3tui_C           22 KHMIKLSNITKVFHQGT-----RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS   96 (366)
T ss_dssp             -CCEEEEEEEEEEECSS-----SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCC
T ss_pred             CceEEEEeEEEEeCCCC-----CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC
Confidence            46899999999996310     1356999999999999999999999999999999999999999999999998764211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                      ..    .    ...+++.++|++|...++..+++.+++ ++  ..+...    +++.++++.+++.  .++++.+|||||
T Consensus        97 ~~----~----~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGq  168 (366)
T 3tui_C           97 ES----E----LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ  168 (366)
T ss_dssp             HH----H----HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHH
T ss_pred             HH----H----HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence            10    0    012345688887776666666665433 32  123332    3567889999986  478899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+||||++++..+||||++|++|++++.|++
T Consensus       169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~  248 (366)
T 3tui_C          169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV  248 (366)
T ss_dssp             HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBH
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            99999999999999999999999999999999999999999877799999999999999999999999999999999999


Q ss_pred             hHHHHhhhhhh
Q 018938          259 DKVKEASKLSL  269 (348)
Q Consensus       259 ~~~~~~~~~~~  269 (348)
                      ++++..+....
T Consensus       249 ~ev~~~p~~~~  259 (366)
T 3tui_C          249 SEVFSHPKTPL  259 (366)
T ss_dssp             HHHHSSCCSHH
T ss_pred             HHHHhCCCcHH
Confidence            99987655443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=8.1e-54  Score=397.57  Aligned_cols=221  Identities=22%  Similarity=0.287  Sum_probs=181.1

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||+|+|++        ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus         5 ~~~l~i~~ls~~y~~--------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~   76 (275)
T 3gfo_A            5 DYILKVEELNYNYSD--------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSR   76 (275)
T ss_dssp             CEEEEEEEEEEECTT--------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSH
T ss_pred             CcEEEEEEEEEEECC--------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCccc
Confidence            458999999999952        356999999999999999999999999999999999999999999999998752100


Q ss_pred             cccccCcccccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDG  177 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgG  177 (348)
                               .....+++.++|++|... .....++.+ +.++.  .+...    +++.++++.+++.  .++++.+||||
T Consensus        77 ---------~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG  147 (275)
T 3gfo_A           77 ---------KGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFG  147 (275)
T ss_dssp             ---------HHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred             ---------ccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHH
Confidence                     001134566777766532 122344443 33322  22232    3567789999986  46789999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+||||++++..+||+|++|++|++++.|+
T Consensus       148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~  227 (275)
T 3gfo_A          148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN  227 (275)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence            99999999999999999999999999999999999999999974449999999999999999999999999999999999


Q ss_pred             hhHHHHhh
Q 018938          258 MDKVKEAS  265 (348)
Q Consensus       258 ~~~~~~~~  265 (348)
                      ++++....
T Consensus       228 ~~~~~~~~  235 (275)
T 3gfo_A          228 PKEVFAEK  235 (275)
T ss_dssp             HHHHTHHH
T ss_pred             HHHHhcCH
Confidence            99987643

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=3e-53  Score=392.26  Aligned_cols=216  Identities=25%  Similarity=0.332  Sum_probs=182.5

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||++.|+         ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus         9 ~~~l~~~~l~~~~~---------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~   79 (266)
T 4g1u_C            9 VALLEASHLHYHVQ---------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ   79 (266)
T ss_dssp             CCEEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC
T ss_pred             cceEEEEeEEEEeC---------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC
Confidence            36899999999994         468999999999999999999999999999999999999999999999998753211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--C--CCHHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--G--IDPQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~--~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                 ...+++.++|+++.......+++.+++ ++..  .  ...+++.++++.+++.  .++++.+|||||||
T Consensus        80 -----------~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~Q  148 (266)
T 4g1u_C           80 -----------PKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQ  148 (266)
T ss_dssp             -----------HHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHH
T ss_pred             -----------HHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHH
Confidence                       112344567776655554555665543 3321  1  1235677889999986  46789999999999


Q ss_pred             HHHHHHHHcc------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          181 RVQICMGLLK------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       181 Rv~lAraL~~------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||+|||||++      +|++|||||||+|||+.++..++++|++++++.++|||+||||++++..+||||++|++|++++
T Consensus       149 Rv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~  228 (266)
T 4g1u_C          149 RVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA  228 (266)
T ss_dssp             HHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence            9999999999      9999999999999999999999999999987767899999999999999999999999999999


Q ss_pred             ecChhHHHH
Q 018938          255 AMPMDKVKE  263 (348)
Q Consensus       255 ~g~~~~~~~  263 (348)
                      .|+++++..
T Consensus       229 ~g~~~~~~~  237 (266)
T 4g1u_C          229 CGTPEEVLN  237 (266)
T ss_dssp             EECHHHHCC
T ss_pred             EcCHHHHhC
Confidence            999998865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=5.3e-53  Score=404.07  Aligned_cols=219  Identities=20%  Similarity=0.357  Sum_probs=186.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+|+|+         +..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... 
T Consensus         4 ~l~i~~ls~~y~---------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~-   73 (359)
T 3fvq_A            4 ALHIGHLSKSFQ---------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNT-   73 (359)
T ss_dssp             CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSC-
T ss_pred             EEEEEeEEEEEC---------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECccccc-
Confidence            699999999994         4789999999999999999999999999999999999999999999999987632111 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                          ..    ...++.++|++|+..+++.+++.++ .++..  +..    .+++.++++.+++.  .++++.+|||||||
T Consensus        74 ----~~----~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~Q  145 (359)
T 3fvq_A           74 ----NL----PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQ  145 (359)
T ss_dssp             ----BC----CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHH
T ss_pred             ----cc----chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence                00    1123567787777666666676654 34432  111    24567889999986  47889999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||++||+..+..+++.|.++.++.|.|||+||||++++..+||||++|++|+|+..|++++
T Consensus       146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~e  225 (359)
T 3fvq_A          146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHE  225 (359)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHH
Confidence            99999999999999999999999999999999999988877789999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 018938          261 VKEASK  266 (348)
Q Consensus       261 ~~~~~~  266 (348)
                      +...+.
T Consensus       226 l~~~p~  231 (359)
T 3fvq_A          226 LYRQPA  231 (359)
T ss_dssp             HHHSCS
T ss_pred             HHhCcc
Confidence            887543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.4e-52  Score=403.84  Aligned_cols=216  Identities=23%  Similarity=0.321  Sum_probs=185.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+|+|+         +..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... 
T Consensus         3 ~l~~~~l~~~yg---------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~-   72 (381)
T 3rlf_A            3 SVQLQNVTKAWG---------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-   72 (381)
T ss_dssp             CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-
T ss_pred             EEEEEeEEEEEC---------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-
Confidence            599999999994         4689999999999999999999999999999999999999999999999987632111 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                  .++.++|++|+..+++.+++.+++ ++.  .+...    +++.++++.+++.  .++++.+|||||||
T Consensus        73 ------------~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQ  140 (381)
T 3rlf_A           73 ------------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ  140 (381)
T ss_dssp             ------------GGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHH
T ss_pred             ------------HHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHH
Confidence                        124567777766666666665543 322  23332    4567889999986  47889999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||||++|++|+++..|++++
T Consensus       141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~  220 (381)
T 3rlf_A          141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE  220 (381)
T ss_dssp             HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            99999999999999999999999999999999999999987779999999999999999999999999999999999999


Q ss_pred             HHHhhhh
Q 018938          261 VKEASKL  267 (348)
Q Consensus       261 ~~~~~~~  267 (348)
                      +...+..
T Consensus       221 l~~~p~~  227 (381)
T 3rlf_A          221 LYHYPAD  227 (381)
T ss_dssp             HHHCCSB
T ss_pred             HHhCCcc
Confidence            9876543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=2.4e-52  Score=385.42  Aligned_cols=218  Identities=18%  Similarity=0.264  Sum_probs=181.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...
T Consensus        23 ~~l~i~~l~~~y~---------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~   92 (263)
T 2olj_A           23 QMIDVHQLKKSFG---------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKD   92 (263)
T ss_dssp             CSEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-STT
T ss_pred             heEEEEeEEEEEC---------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Ccc
Confidence            4799999999994         467999999999999999999999999999999999999999999999998652 100


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                          ..    ...+++.++|+++...++..+++.+.+ ++   ..+..    .+++.++++.+++.  .++++.+|||||
T Consensus        93 ----~~----~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq  164 (263)
T 2olj_A           93 ----TN----LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQ  164 (263)
T ss_dssp             ----CC----HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred             ----cc----HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHH
Confidence                00    112345678887765555555555433 32   12222    23466789999985  467899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+||||++++..+||++++|++|++++.|++
T Consensus       165 kQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~  243 (263)
T 2olj_A          165 AQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP  243 (263)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence            99999999999999999999999999999999999999999765 99999999999999999999999999999999999


Q ss_pred             hHHHHhh
Q 018938          259 DKVKEAS  265 (348)
Q Consensus       259 ~~~~~~~  265 (348)
                      +++....
T Consensus       244 ~~~~~~~  250 (263)
T 2olj_A          244 EDLFDRP  250 (263)
T ss_dssp             HHHHHSC
T ss_pred             HHHHhCc
Confidence            9887543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=1.5e-52  Score=386.06  Aligned_cols=213  Identities=15%  Similarity=0.241  Sum_probs=178.2

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||+++|+         ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus         5 ~~~l~i~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~   75 (257)
T 1g6h_A            5 MEILRTENIVKYFG---------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE   75 (257)
T ss_dssp             CEEEEEEEEEEEET---------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC
T ss_pred             CcEEEEeeeEEEEC---------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC
Confidence            45799999999994         467999999999999999999999999999999999999999999999998652210


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----C-----------CC----HHHHHHHHHHcCCC-
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----G-----------ID----PQRRAELIKVLDID-  166 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-----------~~----~~~~~~~l~~l~l~-  166 (348)
                      .          ...+++.++|++++..++..+++.+.+ ++..    +           ..    .+++.++++.+++. 
T Consensus        76 ~----------~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  145 (257)
T 1g6h_A           76 P----------AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH  145 (257)
T ss_dssp             H----------HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG
T ss_pred             H----------HHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch
Confidence            0          012344577877766555555665543 3211    1           11    23456788999986 


Q ss_pred             -cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938          167 -LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV  245 (348)
Q Consensus       167 -~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~  245 (348)
                       .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+||||++++..+||+++
T Consensus       146 ~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~  224 (257)
T 1g6h_A          146 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLY  224 (257)
T ss_dssp             GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEE
T ss_pred             hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEE
Confidence             46789999999999999999999999999999999999999999999999998755 9999999999999999999999


Q ss_pred             EEcCCEEeeecChhH
Q 018938          246 YVAHGKLQLAMPMDK  260 (348)
Q Consensus       246 ~l~~G~i~~~g~~~~  260 (348)
                      +|++|++++.|++++
T Consensus       225 ~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          225 VMFNGQIIAEGRGEE  239 (257)
T ss_dssp             EEETTEEEEEEESHH
T ss_pred             EEECCEEEEEeCHHH
Confidence            999999999998887

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=2.1e-52  Score=380.19  Aligned_cols=220  Identities=20%  Similarity=0.311  Sum_probs=174.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+|+|++..     ...++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......
T Consensus         1 ~l~~~~l~~~y~~~~-----~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~   75 (235)
T 3tif_A            1 MVKLKNVTKTYKMGE-----EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD   75 (235)
T ss_dssp             CEEEEEEEEEEEETT-----EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred             CEEEEEEEEEeCCCC-----cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHH
Confidence            489999999996310     124699999999999999999999999999999999999999999999999875321110


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--C---CCCH----HHHHHHHHHcCCC--c-CccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--A---GIDP----QRRAELIKVLDID--L-SWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~---~~~~----~~~~~~l~~l~l~--~-~~~~~~LSg  176 (348)
                          .   .....++.++|++|...++..+++.+.+ ++.  .   ....    +++.++++.+++.  . ++++.+|||
T Consensus        76 ----~---~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  148 (235)
T 3tif_A           76 ----E---LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG  148 (235)
T ss_dssp             ----H---HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCH
T ss_pred             ----H---HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCH
Confidence                0   0011234578887776666665655433 221  1   2222    3456778888885  2 678999999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+||||++.+ .+||+|++|++|++++.+
T Consensus       149 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~  227 (235)
T 3tif_A          149 GQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREE  227 (235)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEc
Confidence            9999999999999999999999999999999999999999999766699999999999965 789999999999999998


Q ss_pred             ChhHHH
Q 018938          257 PMDKVK  262 (348)
Q Consensus       257 ~~~~~~  262 (348)
                      +++++.
T Consensus       228 ~~~~~~  233 (235)
T 3tif_A          228 KLRGFD  233 (235)
T ss_dssp             ECC---
T ss_pred             Chhhhc
Confidence            877654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=8.6e-52  Score=381.90  Aligned_cols=227  Identities=22%  Similarity=0.264  Sum_probs=181.7

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus         5 ~~l~i~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~   75 (262)
T 1b0u_A            5 NKLHVIDLHKRYG---------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD   75 (262)
T ss_dssp             CCEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEEC
T ss_pred             ceEEEeeEEEEEC---------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccc
Confidence            4799999999994         4679999999999999999999999999999999999999999999999986531000


Q ss_pred             cccc-Ccccc-cchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCC---cCccCCCCC
Q 018938          109 LTSS-GDLSY-LGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDID---LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~---~~~~~~~LS  175 (348)
                      .... ..... ....+++.++|+++...++..+++.+.+ ++   ..+..    .+++.++++.+++.   .++++.+||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS  155 (262)
T 1b0u_A           76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS  155 (262)
T ss_dssp             TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred             ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCC
Confidence            0000 00000 0012345678887765555555655433 21   12222    23466789999985   367899999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+||||++++..+||++++|++|++++.
T Consensus       156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~  234 (262)
T 1b0u_A          156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  234 (262)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999999765 99999999999999999999999999999999


Q ss_pred             cChhHHHHhh
Q 018938          256 MPMDKVKEAS  265 (348)
Q Consensus       256 g~~~~~~~~~  265 (348)
                      |+++++....
T Consensus       235 g~~~~~~~~~  244 (262)
T 1b0u_A          235 GDPEQVFGNP  244 (262)
T ss_dssp             ECHHHHHHSC
T ss_pred             CCHHHHHhCc
Confidence            9999887643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=1.5e-51  Score=394.89  Aligned_cols=215  Identities=25%  Similarity=0.288  Sum_probs=184.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+|+|+         ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....  
T Consensus         3 ~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--   71 (359)
T 2yyz_A            3 SIRVVNLKKYFG---------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP--   71 (359)
T ss_dssp             CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--
T ss_pred             EEEEEEEEEEEC---------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC--
Confidence            599999999994         467999999999999999999999999999999999999999999999998753211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                 ..++.++|++|+..++..+++.+++ ++..  +..    .+++.++++.+++.  .++++.+|||||||
T Consensus        72 -----------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~Q  140 (359)
T 2yyz_A           72 -----------PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQ  140 (359)
T ss_dssp             -----------GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHH
T ss_pred             -----------hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence                       1134577777766666666665543 4332  222    23567889999986  47889999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|++++
T Consensus       141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~  220 (359)
T 2yyz_A          141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDE  220 (359)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999987779999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 018938          261 VKEASK  266 (348)
Q Consensus       261 ~~~~~~  266 (348)
                      +...+.
T Consensus       221 l~~~p~  226 (359)
T 2yyz_A          221 VYDSPK  226 (359)
T ss_dssp             HHHSCS
T ss_pred             HHhCcc
Confidence            876543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.4e-51  Score=375.90  Aligned_cols=216  Identities=19%  Similarity=0.246  Sum_probs=178.0

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||+++|+         ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus         4 ~~~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~   74 (240)
T 1ji0_A            4 DIVLEVQSLHVYYG---------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP   74 (240)
T ss_dssp             SEEEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC
T ss_pred             CceEEEEeEEEEEC---------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC
Confidence            35799999999994         367999999999999999999999999999999999999999999999998653211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-CC--CC--HHHHHHHHHHcC-CC--cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-AG--ID--PQRRAELIKVLD-ID--LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~--~~--~~~~~~~l~~l~-l~--~~~~~~~LSgGq  178 (348)
                      .          ....++.++|+++...++..+++.+.+ ++. ..  ..  .+.+.++++.++ +.  .++++.+|||||
T Consensus        75 ~----------~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq  144 (240)
T 1ji0_A           75 A----------HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGE  144 (240)
T ss_dssp             H----------HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHH
T ss_pred             H----------HHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHH
Confidence            0          001123477777766555555665543 322 11  11  234567788784 63  467899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|+|||+||||++++..+||++++|++|++++.|++
T Consensus       145 ~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~  223 (240)
T 1ji0_A          145 QQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKA  223 (240)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            9999999999999999999999999999999999999999875 589999999999999999999999999999999998


Q ss_pred             hHHHH
Q 018938          259 DKVKE  263 (348)
Q Consensus       259 ~~~~~  263 (348)
                      +++..
T Consensus       224 ~~~~~  228 (240)
T 1ji0_A          224 SELLD  228 (240)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            88764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=1.7e-51  Score=393.62  Aligned_cols=219  Identities=23%  Similarity=0.362  Sum_probs=184.4

Q ss_pred             CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      ..++|+++||+|+|+        +++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...
T Consensus        11 ~~~~l~~~~l~~~y~--------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~   82 (355)
T 1z47_A           11 GSMTIEFVGVEKIYP--------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL   82 (355)
T ss_dssp             CCEEEEEEEEEECCT--------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC
T ss_pred             CCceEEEEEEEEEEc--------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC
Confidence            456899999999993        135799999999999999999999999999999999999999999999999875321


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDG  177 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgG  177 (348)
                      .             ..++.++|++|+..++..+++.+++ ++.  .+..    .+++.++++.+++.  .++++.+||||
T Consensus        83 ~-------------~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGG  149 (355)
T 1z47_A           83 P-------------PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGG  149 (355)
T ss_dssp             C-------------GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHH
T ss_pred             C-------------hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHH
Confidence            1             1234566766665555566665433 322  2223    23567889999986  47889999999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|||+||||++++..+||+|++|++|+++..|+
T Consensus       150 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~  229 (355)
T 1z47_A          150 QQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT  229 (355)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence            99999999999999999999999999999999999999999987779999999999999999999999999999999999


Q ss_pred             hhHHHHhhh
Q 018938          258 MDKVKEASK  266 (348)
Q Consensus       258 ~~~~~~~~~  266 (348)
                      ++++...+.
T Consensus       230 ~~~l~~~p~  238 (355)
T 1z47_A          230 PEEVYEKPG  238 (355)
T ss_dssp             HHHHHHSCS
T ss_pred             HHHHHhCcc
Confidence            999876543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.7e-51  Score=378.49  Aligned_cols=213  Identities=22%  Similarity=0.337  Sum_probs=179.3

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...  
T Consensus        14 ~~l~i~~l~~~y~---------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~--   82 (256)
T 1vpl_A           14 GAVVVKDLRKRIG---------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--   82 (256)
T ss_dssp             CCEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--
T ss_pred             CeEEEEEEEEEEC---------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc--
Confidence            5799999999994         46799999999999999999999999999999999999999999999999865321  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                                ...+++.++|+++...++..+++.+.+ +.  ..+...    +++.++++.+++.  .++++.+||||||
T Consensus        83 ----------~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~  152 (256)
T 1vpl_A           83 ----------PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMV  152 (256)
T ss_dssp             ----------HHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHH
T ss_pred             ----------HHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHH
Confidence                      012345577776665555555555433 21  112222    3466788999986  4678999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  259 (348)
                      |||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.|||+||||++++..+||++++|++|++++.|+++
T Consensus       153 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~  231 (256)
T 1vpl_A          153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVE  231 (256)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHH
T ss_pred             HHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHH
Confidence            999999999999999999999999999999999999999865 4899999999999999999999999999999999998


Q ss_pred             HHHH
Q 018938          260 KVKE  263 (348)
Q Consensus       260 ~~~~  263 (348)
                      ++.+
T Consensus       232 ~~~~  235 (256)
T 1vpl_A          232 ELKE  235 (256)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=8.3e-52  Score=373.62  Aligned_cols=210  Identities=20%  Similarity=0.256  Sum_probs=172.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|+         ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus         3 ~~l~~~~l~~~y~---------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   73 (224)
T 2pcj_A            3 EILRAENIKKVIR---------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNE   73 (224)
T ss_dssp             EEEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCH
T ss_pred             cEEEEEeEEEEEC---------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCH
Confidence            4799999999994         4679999999999999999999999999999999999999999999999986532110


Q ss_pred             ccccCcccccchhhh-hhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          109 LTSSGDLSYLGGEWR-REVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                      .    .    ...++ +.++|+++...++..+++.+.+ ++  ..+..    .+++.++++.+++.  .++++.+|||||
T Consensus        74 ~----~----~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq  145 (224)
T 2pcj_A           74 K----E----LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGE  145 (224)
T ss_dssp             H----H----HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHH
T ss_pred             H----H----HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence            0    0    00122 4577877765555555555433 22  12222    23466788999986  467899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      ||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||+||||++++ .+||++++|++|++++.|+
T Consensus       146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence            99999999999999999999999999999999999999999765 99999999999998 7999999999999998875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=4e-51  Score=392.29  Aligned_cols=215  Identities=25%  Similarity=0.309  Sum_probs=183.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+|+|+         ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....  
T Consensus         3 ~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--   71 (362)
T 2it1_A            3 EIKLENIVKKFG---------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP--   71 (362)
T ss_dssp             CEEEEEEEEESS---------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--
T ss_pred             EEEEEeEEEEEC---------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC--
Confidence            599999999994         467999999999999999999999999999999999999999999999998753211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                 ..++.++|++|+..++..+++.+++ ++.  .+..    .+++.++++.+++.  .++++.+|||||||
T Consensus        72 -----------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q  140 (362)
T 2it1_A           72 -----------PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQ  140 (362)
T ss_dssp             -----------GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHH
T ss_pred             -----------HhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHH
Confidence                       0124567776666666666665443 332  2222    23567889999986  47889999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++||||||||+||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|++++
T Consensus       141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~  220 (362)
T 2it1_A          141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE  220 (362)
T ss_dssp             HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999999977779999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 018938          261 VKEASK  266 (348)
Q Consensus       261 ~~~~~~  266 (348)
                      +...+.
T Consensus       221 ~~~~p~  226 (362)
T 2it1_A          221 VYYKPK  226 (362)
T ss_dssp             HHHSCS
T ss_pred             HHhCcc
Confidence            876543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1.4e-51  Score=394.83  Aligned_cols=220  Identities=20%  Similarity=0.293  Sum_probs=184.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCc--eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTP--LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~--~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      +|+++||+|+|+         ++.  +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....
T Consensus         3 ~l~i~~l~~~y~---------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~   73 (353)
T 1oxx_K            3 RIIVKNVSKVFK---------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG   73 (353)
T ss_dssp             CEEEEEEEEEEG---------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT
T ss_pred             EEEEEeEEEEEC---------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccc
Confidence            699999999994         356  999999999999999999999999999999999999999999999998753210


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq  178 (348)
                      .      .. . ...++.++|++|...++..+++.+++ ++..  +..    .+++.++++.+++.  .++++.+|||||
T Consensus        74 ~------~~-~-~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq  145 (353)
T 1oxx_K           74 K------LI-V-PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQ  145 (353)
T ss_dssp             E------ES-S-CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred             c------cc-C-ChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence            0      00 0 01234577776666666666665543 4332  223    23567889999986  478899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|++
T Consensus       146 ~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~  225 (353)
T 1oxx_K          146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP  225 (353)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            99999999999999999999999999999999999999999777799999999999999999999999999999999999


Q ss_pred             hHHHHhhh
Q 018938          259 DKVKEASK  266 (348)
Q Consensus       259 ~~~~~~~~  266 (348)
                      +++...+.
T Consensus       226 ~~l~~~p~  233 (353)
T 1oxx_K          226 EDLYDNPV  233 (353)
T ss_dssp             HHHHHSCS
T ss_pred             HHHHhCcc
Confidence            99876543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=3.9e-51  Score=390.69  Aligned_cols=214  Identities=23%  Similarity=0.348  Sum_probs=183.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+|+|+         ++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...   
T Consensus         1 ml~~~~l~~~y~---------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~---   67 (348)
T 3d31_A            1 MIEIESLSRKWK---------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL---   67 (348)
T ss_dssp             CEEEEEEEEECS---------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS---
T ss_pred             CEEEEEEEEEEC---------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC---
Confidence            489999999994         35 99999999999999999999999999999999999999999999999865321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--C-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--G-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~  183 (348)
                                ...++.++|++|+..++..+++.+++ ++..  + ...+++.++++.+++.  .++++.+|||||||||+
T Consensus        68 ----------~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRva  137 (348)
T 3d31_A           68 ----------SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVA  137 (348)
T ss_dssp             ----------CHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHH
T ss_pred             ----------chhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence                      01245677877766666666665443 3221  1 1236678899999986  47889999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      |||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++..
T Consensus       138 lAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~  217 (348)
T 3d31_A          138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE  217 (348)
T ss_dssp             HHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999999999999999999999999999987779999999999999999999999999999999999999876


Q ss_pred             hhh
Q 018938          264 ASK  266 (348)
Q Consensus       264 ~~~  266 (348)
                      .+.
T Consensus       218 ~p~  220 (348)
T 3d31_A          218 KPV  220 (348)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=3.9e-51  Score=393.72  Aligned_cols=215  Identities=22%  Similarity=0.262  Sum_probs=180.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+|+|+         ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....  
T Consensus        11 ~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--   79 (372)
T 1v43_A           11 EVKLENLTKRFG---------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP--   79 (372)
T ss_dssp             CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--
T ss_pred             eEEEEEEEEEEC---------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC--
Confidence            699999999994         467999999999999999999999999999999999999999999999998753211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                 ..++.++|++|...++..+++.+++ ++..  +...    +++.++++.+++.  .++++.+|||||||
T Consensus        80 -----------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q  148 (372)
T 1v43_A           80 -----------PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQ  148 (372)
T ss_dssp             -----------GGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHH
T ss_pred             -----------hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence                       1134567776666666666665543 4332  2222    3467889999986  47889999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|++++
T Consensus       149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~  228 (372)
T 1v43_A          149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE  228 (372)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999987779999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 018938          261 VKEASK  266 (348)
Q Consensus       261 ~~~~~~  266 (348)
                      +...+.
T Consensus       229 l~~~p~  234 (372)
T 1v43_A          229 VYLRPN  234 (372)
T ss_dssp             HHHCCS
T ss_pred             HHhCcc
Confidence            876543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=5.8e-51  Score=371.55  Aligned_cols=211  Identities=21%  Similarity=0.301  Sum_probs=176.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+++|+         +  +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|.++....  
T Consensus         1 ml~~~~l~~~y~---------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--   66 (240)
T 2onk_A            1 MFLKVRAEKRLG---------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--   66 (240)
T ss_dssp             CCEEEEEEEEET---------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--
T ss_pred             CEEEEEEEEEeC---------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--
Confidence            478999999994         2  59999999999 999999999999999999999999999999999998653210  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv  182 (348)
                                 ..++.++|+++...++..+++.+.+ ++.....    .+++.++++.+++.  .++++.+|||||||||
T Consensus        67 -----------~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv  135 (240)
T 2onk_A           67 -----------PERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV  135 (240)
T ss_dssp             -----------TTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHH
T ss_pred             -----------hhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH
Confidence                       1123466776665555555665543 3321111    24567788889885  4678999999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  262 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  262 (348)
                      +|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||++++..+||++++|++|++++.|+++++.
T Consensus       136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  215 (240)
T 2onk_A          136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999999999999999999999999999999999987666999999999999999999999999999999999999887


Q ss_pred             Hhh
Q 018938          263 EAS  265 (348)
Q Consensus       263 ~~~  265 (348)
                      ...
T Consensus       216 ~~~  218 (240)
T 2onk_A          216 SAK  218 (240)
T ss_dssp             HSC
T ss_pred             hCc
Confidence            543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=8e-51  Score=392.01  Aligned_cols=221  Identities=22%  Similarity=0.301  Sum_probs=184.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+|+|+         ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... 
T Consensus         3 ~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-   72 (372)
T 1g29_1            3 GVRLVDVWKVFG---------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK-   72 (372)
T ss_dssp             EEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG-
T ss_pred             EEEEEeEEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccc-
Confidence            699999999994         4679999999999999999999999999999999999999999999999987532100 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                          ... .. ..++.++|++|+..++..+++.+++ ++.  .+...    +++.++++.+++.  .++++.+|||||||
T Consensus        73 ----~~~-~~-~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q  146 (372)
T 1g29_1           73 ----GIF-VP-PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQ  146 (372)
T ss_dssp             ----TEE-CC-GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHH
T ss_pred             ----ccc-CC-HhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHH
Confidence                000 00 1134577777766666666665543 332  22222    3567889999986  47889999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|++++
T Consensus       147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~  226 (372)
T 1g29_1          147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE  226 (372)
T ss_dssp             HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999987779999999999999999999999999999999999999


Q ss_pred             HHHhhh
Q 018938          261 VKEASK  266 (348)
Q Consensus       261 ~~~~~~  266 (348)
                      +...+.
T Consensus       227 l~~~p~  232 (372)
T 1g29_1          227 VYDKPA  232 (372)
T ss_dssp             HHHSCS
T ss_pred             HHhCcc
Confidence            876543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=4.3e-50  Score=371.38  Aligned_cols=213  Identities=23%  Similarity=0.296  Sum_probs=177.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCC---CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGS---TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD  106 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~---~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~  106 (348)
                      +|+++||+++|+.       ++   +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...
T Consensus         2 ~l~~~~l~~~y~~-------~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~   74 (266)
T 2yz2_A            2 RIEVVNVSHIFHR-------GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY   74 (266)
T ss_dssp             CEEEEEEEEEEST-------TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH
T ss_pred             EEEEEEEEEEecC-------CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH
Confidence            5899999999951       12   4699999999999999999999999999999999999999999999999764210


Q ss_pred             ccccccCcccccchhhhhhhhhcCCCc-cccccchHHHHH-hccC----C-CCHHHHHHHHHHcCCC----cCccCCCCC
Q 018938          107 TALTSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMI-FGVA----G-IDPQRRAELIKVLDID----LSWRMHKVS  175 (348)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~----~-~~~~~~~~~l~~l~l~----~~~~~~~LS  175 (348)
                                    .+++.++|+++.. ......++.+.+ ++..    . ...+++.++++.+++.    .++++.+||
T Consensus        75 --------------~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LS  140 (266)
T 2yz2_A           75 --------------EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLS  140 (266)
T ss_dssp             --------------HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSC
T ss_pred             --------------HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCC
Confidence                          2334567776653 223344554433 3211    1 1245678899999987    367899999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||+||||++++..+||++++|++|+++..
T Consensus       141 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~  219 (266)
T 2yz2_A          141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFD  219 (266)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999998765 99999999999999999999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+++++...
T Consensus       220 g~~~~~~~~  228 (266)
T 2yz2_A          220 GTRMEFLEK  228 (266)
T ss_dssp             EEHHHHHHH
T ss_pred             CCHHHHhcC
Confidence            998887654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=7.1e-51  Score=378.79  Aligned_cols=217  Identities=23%  Similarity=0.360  Sum_probs=174.7

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||+++|+         ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... 
T Consensus        19 ~~~l~~~~l~~~y~---------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~-   88 (279)
T 2ihy_A           19 HMLIQLDQIGRMKQ---------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKV-   88 (279)
T ss_dssp             CEEEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---
T ss_pred             CceEEEEeEEEEEC---------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccc-
Confidence            34799999999994         36799999999999999999999999999999999999999999999999764200 


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccc--cccchHHHHH-hccC------C-CC---HHHHHHHHHHcCCC--cCccCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPI--QMDVSAEKMI-FGVA------G-ID---PQRRAELIKVLDID--LSWRMH  172 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~------~-~~---~~~~~~~l~~l~l~--~~~~~~  172 (348)
                      ..        ....+++.++|+++....  ...+++.+.+ ++..      . ..   .+++.++++.+++.  .++++.
T Consensus        89 ~~--------~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~  160 (279)
T 2ihy_A           89 GY--------SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG  160 (279)
T ss_dssp             -C--------CHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred             cC--------CHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh
Confidence            00        001233456666544322  1223444433 3210      1 12   23456788899985  467899


Q ss_pred             CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEE--EEEecChhhhhhhCCEEEEEcCC
Q 018938          173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI--IYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tv--iivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      +|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+||  |+||||++++..+||++++|++|
T Consensus       161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G  239 (279)
T 2ihy_A          161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDG  239 (279)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECC
Confidence            99999999999999999999999999999999999999999999999765 8999  99999999999999999999999


Q ss_pred             EEeeecChhHHHH
Q 018938          251 KLQLAMPMDKVKE  263 (348)
Q Consensus       251 ~i~~~g~~~~~~~  263 (348)
                      ++++.|+++++..
T Consensus       240 ~i~~~g~~~~~~~  252 (279)
T 2ihy_A          240 QSIQQGAVEDILT  252 (279)
T ss_dssp             EEEEEEEHHHHCS
T ss_pred             EEEEECCHHHHhc
Confidence            9999999887754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=1e-49  Score=365.03  Aligned_cols=213  Identities=23%  Similarity=0.334  Sum_probs=173.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      -|+++||+|+|++       +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....  
T Consensus         7 ~~~~~~l~~~y~~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~--   77 (247)
T 2ff7_A            7 DITFRNIRFRYKP-------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD--   77 (247)
T ss_dssp             EEEEEEEEEESST-------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC--
T ss_pred             ceeEEEEEEEeCC-------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC--
Confidence            5899999999931       2367999999999999999999999999999999999999999999999998652110  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcCCC-------------cCccCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID-------------LSWRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LS  175 (348)
                               ...+++.++|+++...++. .++.+.+ ++......+++.++++.+++.             .++++.+||
T Consensus        78 ---------~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS  147 (247)
T 2ff7_A           78 ---------PNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS  147 (247)
T ss_dssp             ---------HHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCC
T ss_pred             ---------HHHHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCC
Confidence                     1124556788876655443 3555544 332233445566667766653             123568999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|++|||||||++||+.++..++++|+++. + |+|||+||||++++.. ||++++|++|++++.
T Consensus       148 gGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~  224 (247)
T 2ff7_A          148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQ  224 (247)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGTT-SSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999983 4 8999999999999875 999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+++++...
T Consensus       225 g~~~~l~~~  233 (247)
T 2ff7_A          225 GKHKELLSE  233 (247)
T ss_dssp             ECHHHHHTS
T ss_pred             CCHHHHHhC
Confidence            999988754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=8.3e-50  Score=370.29  Aligned_cols=217  Identities=22%  Similarity=0.305  Sum_probs=173.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+++|++.      +.+++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... 
T Consensus        15 ~~l~~~~l~~~y~~~------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~-   87 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNH------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD-   87 (271)
T ss_dssp             CCEEEEEEEECCTTC------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC-
T ss_pred             ceEEEEEEEEEeCCC------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCC-
Confidence            479999999999520      1257999999999999999999999999999999999999999999999998653210 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhccCCCCH-HH---------HHHHHHHc--CCC--cCccCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGVAGIDP-QR---------RAELIKVL--DID--LSWRMHK  173 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~---------~~~~l~~l--~l~--~~~~~~~  173 (348)
                                ...+++.++|+++...++.. ++.+ +.++...... ..         +.++++.+  ++.  .++++.+
T Consensus        88 ----------~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~  156 (271)
T 2ixe_A           88 ----------HHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ  156 (271)
T ss_dssp             ----------HHHHHHHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT
T ss_pred             ----------HHHHhccEEEEecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC
Confidence                      11245567888776555443 5544 4343322111 11         12345555  443  3567899


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|+|||+||||++++.. ||+|++|++|+++
T Consensus       157 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~  235 (271)
T 2ixe_A          157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVC  235 (271)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999865568999999999999975 9999999999999


Q ss_pred             eecChhHHHHh
Q 018938          254 LAMPMDKVKEA  264 (348)
Q Consensus       254 ~~g~~~~~~~~  264 (348)
                      +.|+++++...
T Consensus       236 ~~g~~~~l~~~  246 (271)
T 2ixe_A          236 EQGTHLQLMER  246 (271)
T ss_dssp             EEECHHHHHHH
T ss_pred             EECCHHHHHhC
Confidence            99999988654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=1.7e-49  Score=373.35  Aligned_cols=214  Identities=22%  Similarity=0.331  Sum_probs=177.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+|+|++        ..++|+||||+|++||+++|+||||||||||+|+|+|++.|++|+|.++|.++.... 
T Consensus        52 ~~i~~~~vs~~y~~--------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~-  122 (306)
T 3nh6_A           52 GRIEFENVHFSYAD--------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT-  122 (306)
T ss_dssp             CCEEEEEEEEESST--------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC-
T ss_pred             CeEEEEEEEEEcCC--------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC-
Confidence            35999999999952        467999999999999999999999999999999999999999999999998753211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LS  175 (348)
                                ...+++.++|++|+..++.....+++.++......++..++++..++.             ..++..+||
T Consensus       123 ----------~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LS  192 (306)
T 3nh6_A          123 ----------QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS  192 (306)
T ss_dssp             ----------HHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCC
T ss_pred             ----------HHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCC
Confidence                      124567788887776655443344555554444455555555554431             234567999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|+||||||||++||+.++..+++.|+++.+  ++|||+||||++.+.. ||+|++|++|+|++.
T Consensus       193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~  269 (306)
T 3nh6_A          193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKDGCIVER  269 (306)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999999853  7899999999999986 999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+++++.+.
T Consensus       270 G~~~el~~~  278 (306)
T 3nh6_A          270 GRHEALLSR  278 (306)
T ss_dssp             ECHHHHHHH
T ss_pred             CCHHHHHhc
Confidence            999998764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1.8e-49  Score=364.57  Aligned_cols=201  Identities=20%  Similarity=0.319  Sum_probs=165.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|++        ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.          
T Consensus         4 ~l~i~~l~~~y~~--------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~----------   65 (253)
T 2nq2_C            4 ALSVENLGFYYQA--------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY----------   65 (253)
T ss_dssp             EEEEEEEEEEETT--------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC----------
T ss_pred             eEEEeeEEEEeCC--------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe----------
Confidence            7999999999941        4679999999999999999999999999999999999999999998621          


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC---C----CC---HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA---G----ID---PQRRAELIKVLDID--LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~----~~---~~~~~~~l~~l~l~--~~~~~~~LSg  176 (348)
                                    +.++|+++...++...++.+. .++..   +    ..   .+++.++++.+++.  .++++.+|||
T Consensus        66 --------------~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg  131 (253)
T 2nq2_C           66 --------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSG  131 (253)
T ss_dssp             --------------SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred             --------------ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCH
Confidence                          123344343333333444433 22210   1    12   23467788999986  4678999999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|+|||++|||++++..+||++++|++|+ ++.|
T Consensus       132 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g  210 (253)
T 2nq2_C          132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFG  210 (253)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecC
Confidence            999999999999999999999999999999999999999999876558999999999999999999999999999 8889


Q ss_pred             ChhHHHH
Q 018938          257 PMDKVKE  263 (348)
Q Consensus       257 ~~~~~~~  263 (348)
                      +++++..
T Consensus       211 ~~~~~~~  217 (253)
T 2nq2_C          211 ETRNILT  217 (253)
T ss_dssp             EHHHHCC
T ss_pred             CHHHHhC
Confidence            8887753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=1.6e-49  Score=362.92  Aligned_cols=211  Identities=18%  Similarity=0.317  Sum_probs=172.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|+        +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... 
T Consensus         1 ml~~~~l~~~y~--------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-   71 (243)
T 1mv5_A            1 MLSARHVDFAYD--------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL-   71 (243)
T ss_dssp             CEEEEEEEECSS--------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC-
T ss_pred             CEEEEEEEEEeC--------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-
Confidence            489999999994        23679999999999999999999999999999999999999999999999986532110 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc-cCCCCHHHHHHHHHHcCCCc-------------CccCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG-VAGIDPQRRAELIKVLDIDL-------------SWRMHKV  174 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~l~l~~-------------~~~~~~L  174 (348)
                                ..+++.++|+++...++.. ++.+.+ ++ ......+++.++++.+++..             ++++.+|
T Consensus        72 ----------~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L  140 (243)
T 1mv5_A           72 ----------ENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI  140 (243)
T ss_dssp             ----------SCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred             ----------HHHHhhEEEEcCCCccccc-cHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcC
Confidence                      1123456777665544443 555543 33 12334556677788777631             2346799


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||||||||+|||||+.+|++|||||||+|||+.++..++++|+++. + |+|||+||||++++. .||++++|++|++++
T Consensus       141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~  217 (243)
T 1mv5_A          141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEKGQITG  217 (243)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEETTEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999985 4 899999999999886 599999999999999


Q ss_pred             ecChhHHHH
Q 018938          255 AMPMDKVKE  263 (348)
Q Consensus       255 ~g~~~~~~~  263 (348)
                      .|+++++..
T Consensus       218 ~g~~~~~~~  226 (243)
T 1mv5_A          218 SGKHNELVA  226 (243)
T ss_dssp             CSCHHHHHH
T ss_pred             eCCHHHHHh
Confidence            999988765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=3.7e-49  Score=362.00  Aligned_cols=210  Identities=21%  Similarity=0.250  Sum_probs=165.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCeeccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~~~~~~~  107 (348)
                      +|+++||+++|+         ++++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|.++....
T Consensus         3 ~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~   73 (250)
T 2d2e_A            3 QLEIRDLWASID---------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS   73 (250)
T ss_dssp             EEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSC
T ss_pred             eEEEEeEEEEEC---------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCC
Confidence            699999999994         36799999999999999999999999999999999998  7899999999998653211


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CC--CC----HHHHHHHHHHcCCC---cCccCCC-
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AG--ID----PQRRAELIKVLDID---LSWRMHK-  173 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~--~~----~~~~~~~l~~l~l~---~~~~~~~-  173 (348)
                      .          ....+..++|+++....+..+++.+++ +..   ..  ..    .+++.++++.+++.   .++++.+ 
T Consensus        74 ~----------~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~  143 (250)
T 2d2e_A           74 P----------DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEG  143 (250)
T ss_dssp             H----------HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC
T ss_pred             H----------HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence            0          000122355665555444445554432 111   11  11    23456788889984   3677888 


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEEEEcCCEE
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKL  252 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~~l~~G~i  252 (348)
                      |||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|+|||+||||++++..+ ||++++|++|++
T Consensus       144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i  222 (250)
T 2d2e_A          144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRV  222 (250)
T ss_dssp             ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEE
Confidence            999999999999999999999999999999999999999999999854 589999999999999988 599999999999


Q ss_pred             eeecChh
Q 018938          253 QLAMPMD  259 (348)
Q Consensus       253 ~~~g~~~  259 (348)
                      ++.|+++
T Consensus       223 ~~~g~~~  229 (250)
T 2d2e_A          223 VATGGPE  229 (250)
T ss_dssp             EEEESHH
T ss_pred             EEEeCHH
Confidence            9999887

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=7.6e-49  Score=363.13  Aligned_cols=214  Identities=19%  Similarity=0.240  Sum_probs=169.7

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCeeccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGRSAFH  105 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~~~~~  105 (348)
                      .++|+++||+++|+         ++++|+||||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.++|.++..
T Consensus        18 ~~~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~   88 (267)
T 2zu0_C           18 SHMLSIKDLHVSVE---------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA   88 (267)
T ss_dssp             --CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGG
T ss_pred             CceEEEEeEEEEEC---------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCc
Confidence            35799999999994         46799999999999999999999999999999999998  46889999999986532


Q ss_pred             cccccccCcccccchhh-hhhhhhcCCCccccccchHHHHH-h---------ccCCCCH----HHHHHHHHHcCCC---c
Q 018938          106 DTALTSSGDLSYLGGEW-RREVAFAGFEVPIQMDVSAEKMI-F---------GVAGIDP----QRRAELIKVLDID---L  167 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~----~~~~~~l~~l~l~---~  167 (348)
                      ...           ... +..++|+++...++..++..+++ +         +......    +++.++++.+++.   .
T Consensus        89 ~~~-----------~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~  157 (267)
T 2zu0_C           89 LSP-----------EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLL  157 (267)
T ss_dssp             SCH-----------HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT
T ss_pred             CCH-----------HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHh
Confidence            110           011 22356665554444444433321 1         1111222    3456788889984   2


Q ss_pred             CccCC-CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEE
Q 018938          168 SWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIV  245 (348)
Q Consensus       168 ~~~~~-~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~  245 (348)
                      ++++. +|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|+|||+||||++++..+ ||+++
T Consensus       158 ~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~  236 (267)
T 2zu0_C          158 TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVH  236 (267)
T ss_dssp             TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEE
T ss_pred             cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEE
Confidence            56776 5999999999999999999999999999999999999999999998854 489999999999999886 99999


Q ss_pred             EEcCCEEeeecChhHHH
Q 018938          246 YVAHGKLQLAMPMDKVK  262 (348)
Q Consensus       246 ~l~~G~i~~~g~~~~~~  262 (348)
                      +|++|++++.|+++++.
T Consensus       237 ~l~~G~i~~~g~~~~~~  253 (267)
T 2zu0_C          237 VLYQGRIVKSGDFTLVK  253 (267)
T ss_dssp             EEETTEEEEEECTTHHH
T ss_pred             EEECCEEEEEcCHHHHh
Confidence            99999999999988764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=6.8e-49  Score=359.68  Aligned_cols=208  Identities=19%  Similarity=0.253  Sum_probs=175.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++             ++|+++||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++....  
T Consensus         4 ~l~~~~l~~~-------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~--   67 (249)
T 2qi9_C            4 VMQLQDVAES-------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS--   67 (249)
T ss_dssp             EEEEEEEEET-------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC--
T ss_pred             EEEEEceEEE-------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC--
Confidence            6999999863             4899999999999999999999999999999999999999 99999998642110  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-CCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC  185 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA  185 (348)
                               ...+++.++|+++...++..+++.+.+ ++. .....+++.++++.+++.  .++++.+|||||||||+||
T Consensus        68 ---------~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA  138 (249)
T 2qi9_C           68 ---------ATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA  138 (249)
T ss_dssp             ---------HHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred             ---------HHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence                     113455678887766555555665543 322 122356678899999986  4678999999999999999


Q ss_pred             HHHccCCc-------EEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          186 MGLLKPFK-------VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       186 raL~~~P~-------lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      |||+.+|+       +|||||||+|||+.++..++++|+++.++ |+|||++|||++++..+||++++|++|++++.|++
T Consensus       139 raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  217 (249)
T 2qi9_C          139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR  217 (249)
T ss_dssp             HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred             HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999       99999999999999999999999998755 99999999999999999999999999999999998


Q ss_pred             hHHHH
Q 018938          259 DKVKE  263 (348)
Q Consensus       259 ~~~~~  263 (348)
                      +++..
T Consensus       218 ~~~~~  222 (249)
T 2qi9_C          218 EEVLT  222 (249)
T ss_dssp             HHHSC
T ss_pred             HHHhc
Confidence            87753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=3.3e-48  Score=357.57  Aligned_cols=214  Identities=19%  Similarity=0.289  Sum_probs=171.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++|+++||+++|++.      ..+++|+++||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.++.... 
T Consensus        16 ~~l~i~~l~~~y~~~------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~-   87 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQ------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYN-   87 (260)
T ss_dssp             CCEEEEEEEECCTTC------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBC-
T ss_pred             CeEEEEEEEEEeCCC------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcC-
Confidence            369999999999531      124699999999999999999999999999999999999976 899999998653210 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKV  174 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~L  174 (348)
                                ...+++.++|+++...++. .++.+ +.++......+++.++++.+++.             .++++.+|
T Consensus        88 ----------~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L  156 (260)
T 2ghi_A           88 ----------RNSIRSIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL  156 (260)
T ss_dssp             ----------HHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred             ----------HHHHhccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence                      1123456777776655543 35544 43432223344555666665542             13467899


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||||||||+|||||+.+|++|||||||+|||+.++..++++|+++. + |+|||+||||++++. .||++++|++|++++
T Consensus       157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~  233 (260)
T 2ghi_A          157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVE  233 (260)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999984 3 799999999999986 599999999999999


Q ss_pred             ecChhHHHHh
Q 018938          255 AMPMDKVKEA  264 (348)
Q Consensus       255 ~g~~~~~~~~  264 (348)
                      .|+++++...
T Consensus       234 ~g~~~~l~~~  243 (260)
T 2ghi_A          234 KGTHKDLLKL  243 (260)
T ss_dssp             EECHHHHHHH
T ss_pred             ECCHHHHHhc
Confidence            9999988653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=2.1e-48  Score=359.04  Aligned_cols=207  Identities=21%  Similarity=0.317  Sum_probs=169.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+++|++..     +.+++|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++... . 
T Consensus         1 ml~~~~l~~~y~~~~-----~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~-   71 (263)
T 2pjz_A            1 MIQLKNVGITLSGKG-----YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-R-   71 (263)
T ss_dssp             CEEEEEEEEEEEEET-----TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-S-
T ss_pred             CEEEEEEEEEeCCCC-----ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-H-
Confidence            489999999994100     01579999999999 9999999999999999999999999 9999999999865321 0 


Q ss_pred             cccCcccccchhhhhhhh-hcCCCccccccchHHHHH-hc--cCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVA-FAGFEVPIQMDVSAEKMI-FG--VAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv  182 (348)
                                 . ++.++ |+++...+  ..+..+.+ +.  ......+++.++++.+++.   .++++.+|||||||||
T Consensus        72 -----------~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv  137 (263)
T 2pjz_A           72 -----------N-YIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV  137 (263)
T ss_dssp             -----------C-CTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH
T ss_pred             -----------H-hhheEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence                       1 23345 55444333  34444332 21  1133456778899999987   4678999999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC-EEEEEcCCEEeeecChhHH
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS-HIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d-~v~~l~~G~i~~~g~~~~~  261 (348)
                      +|||||+.+|++|||||||+|||+.++..++++|+++.   . |||+||||++++..+|| ++++|++|++++.|+++++
T Consensus       138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l  213 (263)
T 2pjz_A          138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSEL  213 (263)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred             HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHH
Confidence            99999999999999999999999999999999998863   2 99999999999999999 9999999999999999887


Q ss_pred             HH
Q 018938          262 KE  263 (348)
Q Consensus       262 ~~  263 (348)
                      .+
T Consensus       214 ~~  215 (263)
T 2pjz_A          214 LE  215 (263)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.5e-48  Score=373.41  Aligned_cols=216  Identities=18%  Similarity=0.222  Sum_probs=179.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+|+|+.       ++..+|++|||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.... 
T Consensus        18 ~~i~~~~l~~~y~~-------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~-   88 (390)
T 3gd7_A           18 GQMTVKDLTAKYTE-------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT-   88 (390)
T ss_dssp             CCEEEEEEEEESSS-------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC-
T ss_pred             CeEEEEEEEEEecC-------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC-
Confidence            46999999999953       34689999999999999999999999999999999999987 8999999998653211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCC-----------CC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHK-----------VS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------LS  175 (348)
                                ...+++.++|++|+..++. .++.+++........+++.++++.+++.  .++++.+           ||
T Consensus        89 ----------~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LS  157 (390)
T 3gd7_A           89 ----------LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS  157 (390)
T ss_dssp             ----------HHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSC
T ss_pred             ----------hHHHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCC
Confidence                      1234567788877655554 4555554322334566778889999885  3666776           99


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|++|||||||++||+..+..+++.|+++.  .+.|+|+||||++.+. .||||++|++|+|+..
T Consensus       158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~  234 (390)
T 3gd7_A          158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAML-ECDQFLVIEENKVRQY  234 (390)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGGT-TCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999998763  4799999999987664 6999999999999999


Q ss_pred             cChhHHHHhhhh
Q 018938          256 MPMDKVKEASKL  267 (348)
Q Consensus       256 g~~~~~~~~~~~  267 (348)
                      |+++++...+..
T Consensus       235 g~~~el~~~p~~  246 (390)
T 3gd7_A          235 DSILELYHYPAD  246 (390)
T ss_dssp             SSHHHHHHCCSB
T ss_pred             CCHHHHHhCCCc
Confidence            999999876543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=9.7e-48  Score=349.81  Aligned_cols=199  Identities=19%  Similarity=0.293  Sum_probs=155.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+++|++       +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..       
T Consensus         3 ~l~~~~l~~~y~~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i-------   68 (237)
T 2cbz_A            3 SITVRNATFTWAR-------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSV-------   68 (237)
T ss_dssp             CEEEEEEEEESCT-------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCE-------
T ss_pred             eEEEEEEEEEeCC-------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-------
Confidence            5999999999952       13679999999999999999999999999999999999999999999998831       


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHH------cCCC-------cCccCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKV------LDID-------LSWRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~------l~l~-------~~~~~~~LS  175 (348)
                                       +|+++...+ ...++.+. .++.. ...+...++++.      +++.       .++++.+||
T Consensus        69 -----------------~~v~Q~~~~-~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS  129 (237)
T 2cbz_A           69 -----------------AYVPQQAWI-QNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLS  129 (237)
T ss_dssp             -----------------EEECSSCCC-CSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCC
T ss_pred             -----------------EEEcCCCcC-CCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCC
Confidence                             222222211 23344433 33221 111122223332      2221       246789999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHH---HHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR---KECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~---~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      |||||||+|||||+.+|++|||||||+|||+.++..+++.|.   ++.  .|+|||+||||++++. .||++++|++|++
T Consensus       130 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~~-~~d~v~~l~~G~i  206 (237)
T 2cbz_A          130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSYLP-QVDVIIVMSGGKI  206 (237)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTGG-GSSEEEEEETTEE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHHH-hCCEEEEEeCCEE
Confidence            999999999999999999999999999999999999999984   332  3899999999999986 6999999999999


Q ss_pred             eeecChhHHHHh
Q 018938          253 QLAMPMDKVKEA  264 (348)
Q Consensus       253 ~~~g~~~~~~~~  264 (348)
                      ++.|+++++...
T Consensus       207 ~~~g~~~~~~~~  218 (237)
T 2cbz_A          207 SEMGSYQELLAR  218 (237)
T ss_dssp             EEEECHHHHHHH
T ss_pred             EEeCCHHHHhhc
Confidence            999999988653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=2.5e-47  Score=345.37  Aligned_cols=199  Identities=25%  Similarity=0.345  Sum_probs=154.9

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+++|++       +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..      
T Consensus         5 ~~l~~~~l~~~y~~-------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i------   71 (229)
T 2pze_A            5 TEVVMENVTAFWEE-------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI------   71 (229)
T ss_dssp             EEEEEEEEEECSST-------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCE------
T ss_pred             ceEEEEEEEEEeCC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEE------
Confidence            37999999999952       24679999999999999999999999999999999999999999999998732      


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHHcCCC-------------cCccCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKVLDID-------------LSWRMHKV  174 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~L  174 (348)
                                        +|+++...++.. ++.++ .++.. .......++++.+++.             .++++.+|
T Consensus        72 ------------------~~v~q~~~~~~~-tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L  131 (229)
T 2pze_A           72 ------------------SFCSQFSWIMPG-TIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL  131 (229)
T ss_dssp             ------------------EEECSSCCCCSB-CHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTS
T ss_pred             ------------------EEEecCCcccCC-CHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcC
Confidence                              222222222222 33333 33221 1222223333333321             12346899


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF-LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~-l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      ||||||||+|||||+.+|++|||||||+|||+.++..+++. ++++.  .|+|||++|||++++. .||++++|++|+++
T Consensus       132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~  208 (229)
T 2pze_A          132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSSY  208 (229)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HCSEEEEEETTEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHHHH-hCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999997 45543  3789999999999986 59999999999999


Q ss_pred             eecChhHHHH
Q 018938          254 LAMPMDKVKE  263 (348)
Q Consensus       254 ~~g~~~~~~~  263 (348)
                      +.|+++++..
T Consensus       209 ~~g~~~~~~~  218 (229)
T 2pze_A          209 FYGTFSELQN  218 (229)
T ss_dssp             EEECHHHHHT
T ss_pred             EECCHHHHHh
Confidence            9999988764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=6e-48  Score=345.67  Aligned_cols=196  Identities=20%  Similarity=0.270  Sum_probs=162.0

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+++|+         + ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.    
T Consensus         9 ~~l~~~~ls~~y~---------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----   74 (214)
T 1sgw_A            9 SKLEIRDLSVGYD---------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----   74 (214)
T ss_dssp             CEEEEEEEEEESS---------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----
T ss_pred             ceEEEEEEEEEeC---------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----
Confidence            5799999999993         5 8999999999999999999999999999999999999999999999997642    


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cC--CCCHHHHHHHHHHcCCCc-CccCCCCCHHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VA--GIDPQRRAELIKVLDIDL-SWRMHKVSDGQRRRV  182 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~~~l~~l~l~~-~~~~~~LSgGqrQRv  182 (348)
                                  .+++.++|++++..++..+++.+.+ +.  ..  ....+++.++++.+++.. ++++.+|||||||||
T Consensus        75 ------------~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv  142 (214)
T 1sgw_A           75 ------------KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRV  142 (214)
T ss_dssp             ------------GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHH
T ss_pred             ------------hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHH
Confidence                        0234466666655544444554432 21  11  223556788999998854 677899999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      +|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|||++|||++++..+||+++++ .|+|
T Consensus       143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            9999999999999999999999999999999999998754 899999999999999999998754 4554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=6e-45  Score=371.48  Aligned_cols=215  Identities=21%  Similarity=0.285  Sum_probs=176.9

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++|++|+|++       +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  
T Consensus       340 ~~i~~~~v~~~y~~-------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~--  410 (587)
T 3qf4_A          340 GSVSFENVEFRYFE-------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV--  410 (587)
T ss_dssp             CCEEEEEEEECSSS-------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB--
T ss_pred             CcEEEEEEEEEcCC-------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC--
Confidence            46999999999963       346799999999999999999999999999999999999999999999999865321  


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-----------C--cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-----------D--LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LS  175 (348)
                               ....+++.+++++|+..++.....+++.++....+.++..+.++..++           +  ..++..+||
T Consensus       411 ---------~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LS  481 (587)
T 3qf4_A          411 ---------KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS  481 (587)
T ss_dssp             ---------CHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSC
T ss_pred             ---------CHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcC
Confidence                     112456778888887666544333444444444445544444444332           1  245678999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+++|++|||||||++||+.++..+.+.|+++.  .|+|+|+|||+++.+. .||+|++|++|++++.
T Consensus       482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~  558 (587)
T 3qf4_A          482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGKVAGF  558 (587)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999874  4899999999999986 7999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+++++.+.
T Consensus       559 g~~~el~~~  567 (587)
T 3qf4_A          559 GTHKELLEH  567 (587)
T ss_dssp             ECHHHHHHH
T ss_pred             CCHHHHHhC
Confidence            999998764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=5.1e-45  Score=371.57  Aligned_cols=215  Identities=20%  Similarity=0.335  Sum_probs=177.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+|+|++       ++.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... 
T Consensus       338 ~~i~~~~v~~~y~~-------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-  409 (578)
T 4a82_A          338 GRIDIDHVSFQYND-------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL-  409 (578)
T ss_dssp             CCEEEEEEEECSCS-------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC-
T ss_pred             CeEEEEEEEEEcCC-------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-
Confidence            46999999999963       3467999999999999999999999999999999999999999999999998753211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LS  175 (348)
                                ...+++.+++++|+..++.....+++.++....+.++..+.++..++.             ..++..+||
T Consensus       410 ----------~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS  479 (578)
T 4a82_A          410 ----------TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS  479 (578)
T ss_dssp             ----------HHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred             ----------HHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCC
Confidence                      124567788888776665553344555554444555566666555431             123457899


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+++|++||||||||+||+.++..+.+.++++.  .++|+|+||||++.+.. ||+|++|++|++++.
T Consensus       480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~  556 (578)
T 4a82_A          480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTITH-ADKIVVIENGHIVET  556 (578)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999874  37899999999999865 999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+++++.+.
T Consensus       557 g~~~el~~~  565 (578)
T 4a82_A          557 GTHRELIAK  565 (578)
T ss_dssp             ECHHHHHHT
T ss_pred             CCHHHHHhC
Confidence            999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=5.1e-45  Score=371.93  Aligned_cols=214  Identities=21%  Similarity=0.308  Sum_probs=176.3

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+|+|++       +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... 
T Consensus       340 ~~i~~~~v~~~y~~-------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~-  411 (582)
T 3b5x_A          340 GEVDVKDVTFTYQG-------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK-  411 (582)
T ss_pred             CeEEEEEEEEEcCC-------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC-
Confidence            46999999999953       2267999999999999999999999999999999999999999999999998653211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc-CCCCHHHHHHHHHHcCCC-------------cCccCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV-AGIDPQRRAELIKVLDID-------------LSWRMHK  173 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~l~~l~l~-------------~~~~~~~  173 (348)
                                ...+++.+++++|+..++.. +.. ++.++. ...+.+++.++++.+++.             ..++..+
T Consensus       412 ----------~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~  480 (582)
T 3b5x_A          412 ----------LTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS  480 (582)
T ss_pred             ----------HHHHhcCeEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence                      12345667888776655544 444 444443 334556667777776652             1234579


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      ||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++. + |+|+|+||||++.+. .||+|++|++|+++
T Consensus       481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~  557 (582)
T 3b5x_A          481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIE-QADEILVVDEGEII  557 (582)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999974 3 899999999999986 69999999999999


Q ss_pred             eecChhHHHHh
Q 018938          254 LAMPMDKVKEA  264 (348)
Q Consensus       254 ~~g~~~~~~~~  264 (348)
                      +.|+++++.+.
T Consensus       558 ~~g~~~~l~~~  568 (582)
T 3b5x_A          558 ERGRHADLLAQ  568 (582)
T ss_pred             EECCHHHHHhC
Confidence            99999998754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=6e-45  Score=371.41  Aligned_cols=215  Identities=24%  Similarity=0.315  Sum_probs=177.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+|+|++       +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... 
T Consensus       340 ~~i~~~~v~~~y~~-------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~-  411 (582)
T 3b60_A          340 GDLEFRNVTFTYPG-------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT-  411 (582)
T ss_dssp             CCEEEEEEEECSSS-------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC-
T ss_pred             CcEEEEEEEEEcCC-------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC-
Confidence            46999999999952       1267999999999999999999999999999999999999999999999998753211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc-CCCCHHHHHHHHHHcCCC-------------cCccCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AGIDPQRRAELIKVLDID-------------LSWRMHKV  174 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~-------------~~~~~~~L  174 (348)
                                ...+++.+++++|+..++.....+++.++. ...+.++..++++.+++.             ..++..+|
T Consensus       412 ----------~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L  481 (582)
T 3b60_A          412 ----------LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL  481 (582)
T ss_dssp             ----------HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred             ----------HHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence                      123566788887776655543334444443 344566667777776652             12356799


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      |||||||++|||||+++|++||||||||+||+.++..+.+.|+++. + |+|+|+||||++.+. .||+|++|++|++++
T Consensus       482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~  558 (582)
T 3b60_A          482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVE  558 (582)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTT-TCSEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHH-hCCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999985 3 899999999999886 699999999999999


Q ss_pred             ecChhHHHHh
Q 018938          255 AMPMDKVKEA  264 (348)
Q Consensus       255 ~g~~~~~~~~  264 (348)
                      .|+++++.+.
T Consensus       559 ~g~~~~l~~~  568 (582)
T 3b60_A          559 RGTHSELLAQ  568 (582)
T ss_dssp             EECHHHHHHH
T ss_pred             ecCHHHHHHc
Confidence            9999998754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=5.1e-45  Score=372.82  Aligned_cols=214  Identities=23%  Similarity=0.332  Sum_probs=175.2

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ..|+++||+|+|++        +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... 
T Consensus       353 ~~i~~~~v~~~y~~--------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~-  423 (598)
T 3qf4_B          353 GEIEFKNVWFSYDK--------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK-  423 (598)
T ss_dssp             CCEEEEEEECCSSS--------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC-
T ss_pred             CeEEEEEEEEECCC--------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC-
Confidence            35999999999952        467999999999999999999999999999999999999999999999998753211 


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCC
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVS  175 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LS  175 (348)
                                ...+++.+++++|+..++.....+++.++....+.++..++++..++.             ..++..+||
T Consensus       424 ----------~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LS  493 (598)
T 3qf4_B          424 ----------RSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLS  493 (598)
T ss_dssp             ----------HHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSC
T ss_pred             ----------HHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCC
Confidence                      124567788887776655443344454544333444455555554432             112347899


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      ||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.  .|+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus       494 gGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~  570 (598)
T 3qf4_B          494 QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEM  570 (598)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSSEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999984  38999999999999875 999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+++++.+.
T Consensus       571 g~~~~l~~~  579 (598)
T 3qf4_B          571 GKHDELIQK  579 (598)
T ss_dssp             SCHHHHHHT
T ss_pred             CCHHHHHhC
Confidence            999998764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=1.2e-44  Score=338.46  Aligned_cols=196  Identities=24%  Similarity=0.327  Sum_probs=140.9

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++|+++||++.+           +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..     
T Consensus        38 ~~~l~~~~l~~~~-----------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i-----  101 (290)
T 2bbs_A           38 DDSLSFSNFSLLG-----------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI-----  101 (290)
T ss_dssp             ------------C-----------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCE-----
T ss_pred             CceEEEEEEEEcC-----------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE-----
Confidence            3579999999864           469999999999999999999999999999999999999999999988731     


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCC
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKV  174 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~L  174 (348)
                                         +|+++...++.. +..+++.+. ........++++.+++.             ..+++.+|
T Consensus       102 -------------------~~v~Q~~~l~~~-tv~enl~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~L  160 (290)
T 2bbs_A          102 -------------------SFCSQNSWIMPG-TIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL  160 (290)
T ss_dssp             -------------------EEECSSCCCCSS-BHHHHHHTT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCC
T ss_pred             -------------------EEEeCCCccCcc-cHHHHhhCc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcC
Confidence                               222222222222 343333221 11222233334444331             12245799


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHH-HHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL-RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l-~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      ||||||||+|||||+.+|++|||||||+|||+.++..+++.+ +++.  .|+|||+||||++++. .||++++|++|+++
T Consensus       161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~~~-~~d~i~~l~~G~i~  237 (290)
T 2bbs_A          161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSSY  237 (290)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HSSEEEEEETTEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHH-cCCEEEEEECCeEE
Confidence            999999999999999999999999999999999999999974 4443  3899999999999986 59999999999999


Q ss_pred             eecChhHHHH
Q 018938          254 LAMPMDKVKE  263 (348)
Q Consensus       254 ~~g~~~~~~~  263 (348)
                      ..|+++++..
T Consensus       238 ~~g~~~~l~~  247 (290)
T 2bbs_A          238 FYGTFSELQN  247 (290)
T ss_dssp             EEECHHHHHH
T ss_pred             EeCCHHHHhh
Confidence            9999988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=2.5e-42  Score=348.29  Aligned_cols=202  Identities=22%  Similarity=0.255  Sum_probs=162.7

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++++++|+++.|+         + ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+..       
T Consensus       285 ~~~l~~~~l~~~~~---------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~-------  347 (538)
T 1yqt_A          285 ETLVTYPRLVKDYG---------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL-------  347 (538)
T ss_dssp             CEEEEECCEEEEET---------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCC-------
T ss_pred             CeEEEEeeEEEEEC---------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECc-------
Confidence            45799999999994         2 479999999999999999999999999999999999999999876411       


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--C-CCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--A-GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv  182 (348)
                            .+.           |+++........++.+++...  . ....+.+.++++.+++.  .++++.+|||||||||
T Consensus       348 ------~i~-----------~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv  410 (538)
T 1yqt_A          348 ------TVA-----------YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRV  410 (538)
T ss_dssp             ------CEE-----------EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHH
T ss_pred             ------eEE-----------EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence                  122           222222111222333332111  0 01234566778888875  3678999999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEeeecChhH
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQLAMPMDK  260 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~  260 (348)
                      +|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++  |++...|++++
T Consensus       411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~  490 (538)
T 1yqt_A          411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMG  490 (538)
T ss_dssp             HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence            9999999999999999999999999999999999998766799999999999999999999999986  78888899988


Q ss_pred             HHH
Q 018938          261 VKE  263 (348)
Q Consensus       261 ~~~  263 (348)
                      +.+
T Consensus       491 ~~~  493 (538)
T 1yqt_A          491 MRE  493 (538)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=4.6e-42  Score=350.16  Aligned_cols=202  Identities=23%  Similarity=0.266  Sum_probs=163.9

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++++++|+++.|+         + ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+..       
T Consensus       355 ~~~l~~~~l~~~~~---------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~-------  417 (607)
T 3bk7_A          355 ETLVEYPRLVKDYG---------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL-------  417 (607)
T ss_dssp             CEEEEECCEEEECS---------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCC-------
T ss_pred             ceEEEEeceEEEec---------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEee-------
Confidence            35799999999994         2 479999999999999999999999999999999999999999876411       


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv  182 (348)
                            .+           +|++|........++.+++...  .. ...+.+.++++.+++.  .++++.+|||||||||
T Consensus       418 ------~i-----------~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv  480 (607)
T 3bk7_A          418 ------TV-----------AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV  480 (607)
T ss_dssp             ------CE-----------EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHH
T ss_pred             ------EE-----------EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence                  12           2222222222223333332211  00 1234567788899885  4678999999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEeeecChhH
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQLAMPMDK  260 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~  260 (348)
                      +|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+|||+++|++  |++...|++++
T Consensus       481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~  560 (607)
T 3bk7_A          481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG  560 (607)
T ss_dssp             HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred             HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHH
Confidence            9999999999999999999999999999999999999766799999999999999999999999986  77888899988


Q ss_pred             HHH
Q 018938          261 VKE  263 (348)
Q Consensus       261 ~~~  263 (348)
                      +.+
T Consensus       561 ~~~  563 (607)
T 3bk7_A          561 MRE  563 (607)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=6.6e-42  Score=344.75  Aligned_cols=202  Identities=19%  Similarity=0.183  Sum_probs=159.1

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .+.++++|+++.|+          ...|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+++..+    
T Consensus       267 ~~~l~~~~l~~~~~----------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i----  332 (538)
T 3ozx_A          267 KTKMKWTKIIKKLG----------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL----  332 (538)
T ss_dssp             CEEEEECCEEEEET----------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCE----
T ss_pred             cceEEEcceEEEEC----------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeee----
Confidence            45799999999994          2568889999999999999999999999999999999999999998765421    


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC---CCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA---GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                              .++.           +........++.+.+ ....   ........++++.+++.  .++++.+||||||||
T Consensus       333 --------~~~~-----------q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QR  393 (538)
T 3ozx_A          333 --------SYKP-----------QRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQK  393 (538)
T ss_dssp             --------EEEC-----------SSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHH
T ss_pred             --------Eeec-----------hhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHH
Confidence                    1111           111111112222221 1111   11223456777778875  467899999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEeeecChh
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQLAMPMD  259 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~~~g~~~  259 (348)
                      |+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++  |.+...+++.
T Consensus       394 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~  473 (538)
T 3ozx_A          394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPV  473 (538)
T ss_dssp             HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred             HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChH
Confidence            99999999999999999999999999999999999999877799999999999999999999999986  4555556665


Q ss_pred             HHH
Q 018938          260 KVK  262 (348)
Q Consensus       260 ~~~  262 (348)
                      ++.
T Consensus       474 ~~~  476 (538)
T 3ozx_A          474 TLK  476 (538)
T ss_dssp             EHH
T ss_pred             HHH
Confidence            544

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.2e-41  Score=373.94  Aligned_cols=216  Identities=22%  Similarity=0.314  Sum_probs=181.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|+..      .+.++|+||||+|++||.+||+||||||||||+++|.|++.|++|+|.++|.++..-   
T Consensus      1076 ~I~f~nVsf~Y~~~------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i--- 1146 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPER------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTL--- 1146 (1321)
T ss_dssp             CEEEEEEEECCTTS------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTB---
T ss_pred             eEEEEEEEEeCCCC------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhC---
Confidence            59999999999641      245799999999999999999999999999999999999999999999999876321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CCCCHHHHHHHHHHcCCC---------cC----ccCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AGIDPQRRAELIKVLDID---------LS----WRMHKV  174 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~---------~~----~~~~~L  174 (348)
                              -...+|+.+++++|++.++.....+++.++.  ...+.+++.++++..++.         .+    .....|
T Consensus      1147 --------~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~L 1218 (1321)
T 4f4c_A         1147 --------NPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQL 1218 (1321)
T ss_dssp             --------CHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSS
T ss_pred             --------CHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCccc
Confidence                    1235788899998887777665556665554  234566777777766541         12    234679


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      |||||||++|||||+++|+|||||||||+||+++...+.+.|+++.  .|+|+|+|+|.++.+.. ||+|+||++|+|++
T Consensus      1219 SgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A         1219 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE 1295 (1321)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTT-CSEEEEESSSSEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHh-CCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999998764  48999999999999875 99999999999999


Q ss_pred             ecChhHHHHhh
Q 018938          255 AMPMDKVKEAS  265 (348)
Q Consensus       255 ~g~~~~~~~~~  265 (348)
                      .|+++++.+..
T Consensus      1296 ~Gth~eLl~~~ 1306 (1321)
T 4f4c_A         1296 KGTHTQLMSEK 1306 (1321)
T ss_dssp             EECHHHHHHCC
T ss_pred             ECCHHHHHhCC
Confidence            99999998753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=6.5e-41  Score=367.42  Aligned_cols=216  Identities=23%  Similarity=0.309  Sum_probs=177.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|++.      .+.++|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.++|.++....  
T Consensus       387 ~i~~~~v~~~y~~~------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~--  458 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSR------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN--  458 (1284)
T ss_dssp             CEEEEEEEECCSST------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC--
T ss_pred             eEEEEEEEEEcCCC------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC--
Confidence            59999999999631      2357999999999999999999999999999999999999999999999998753211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC---------C----cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI---------D----LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSg  176 (348)
                               ...+++.+++++|++.++.....+++.++....+.+++.+.++..++         .    ...+..+|||
T Consensus       459 ---------~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg  529 (1284)
T 3g5u_A          459 ---------VRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSG  529 (1284)
T ss_dssp             ---------HHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCH
T ss_pred             ---------HHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCH
Confidence                     12456778898887766655444555555544455554444443322         1    2345678999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|+|||||||||+||+.+...+.+.++++.  .|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus       530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g  606 (1284)
T 3g5u_A          530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQG  606 (1284)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999998764  48999999999999976 9999999999999999


Q ss_pred             ChhHHHHhh
Q 018938          257 PMDKVKEAS  265 (348)
Q Consensus       257 ~~~~~~~~~  265 (348)
                      +++++.+..
T Consensus       607 ~~~~l~~~~  615 (1284)
T 3g5u_A          607 NHDELMREK  615 (1284)
T ss_dssp             CHHHHHHTT
T ss_pred             CHHHHHhCC
Confidence            999987643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1e-40  Score=366.74  Aligned_cols=216  Identities=25%  Similarity=0.332  Sum_probs=183.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++|++|+|++.      .+.++|+|+||+|++|+.++|+||||||||||+++|.|++.|++|+|.++|.++..-   
T Consensus       415 ~I~~~nvsF~Y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~---  485 (1321)
T 4f4c_A          415 DITVENVHFTYPSR------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDI---  485 (1321)
T ss_dssp             CEEEEEEEECCSSS------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTS---
T ss_pred             cEEEEEeeeeCCCC------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhc---
Confidence            59999999999642      246899999999999999999999999999999999999999999999999875321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSg  176 (348)
                              ....+++.++|++|++.++.....+++.++....+.+++.++++..++.         .    ..+...|||
T Consensus       486 --------~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSG  557 (1321)
T 4f4c_A          486 --------NLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSG  557 (1321)
T ss_dssp             --------CHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCH
T ss_pred             --------cHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCH
Confidence                    1234678899998887776666666777776666777777777665531         1    234568999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      |||||++||||++++|+|||||||||+||+++...+.+.|.++.  .|+|+|+|||++..+. .||+|++|++|+|++.|
T Consensus       558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~G  634 (1321)
T 4f4c_A          558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVG  634 (1321)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccC
Confidence            99999999999999999999999999999999999999999875  3899999999999886 59999999999999999


Q ss_pred             ChhHHHHhh
Q 018938          257 PMDKVKEAS  265 (348)
Q Consensus       257 ~~~~~~~~~  265 (348)
                      +.+++.+..
T Consensus       635 th~eL~~~~  643 (1321)
T 4f4c_A          635 DHRALMAQQ  643 (1321)
T ss_dssp             CHHHHHTTT
T ss_pred             CHHHHHHhh
Confidence            999998653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=1.5e-40  Score=364.49  Aligned_cols=216  Identities=23%  Similarity=0.309  Sum_probs=172.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|++.      .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++....  
T Consensus      1030 ~i~~~~v~~~y~~~------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~-- 1101 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTR------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN-- 1101 (1284)
T ss_dssp             CEEEEEEEBCCSCG------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC--
T ss_pred             cEEEEEEEEECCCC------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC--
Confidence            59999999999631      1347999999999999999999999999999999999999999999999998653211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccC--CCCHHHHHHHHHHcCCC---------c----CccCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA--GIDPQRRAELIKVLDID---------L----SWRMHKV  174 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~l~---------~----~~~~~~L  174 (348)
                               ...+++.+++++|+..++.....+++.++..  ..+.+.+.+.++..++.         .    .....+|
T Consensus      1102 ---------~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~L 1172 (1284)
T 3g5u_A         1102 ---------VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172 (1284)
T ss_dssp             ---------HHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSS
T ss_pred             ---------HHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCcc
Confidence                     1235566788877665444333344444332  23444555555544331         1    2345689


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                      ||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++  ..|+|||+||||++++.. ||||++|++|++++
T Consensus      1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~--~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A         1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA--REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE 1249 (1284)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH--SSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh--CCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE
Confidence            999999999999999999999999999999999999999999875  348999999999999965 99999999999999


Q ss_pred             ecChhHHHHhh
Q 018938          255 AMPMDKVKEAS  265 (348)
Q Consensus       255 ~g~~~~~~~~~  265 (348)
                      .|+++++.+..
T Consensus      1250 ~g~~~~l~~~~ 1260 (1284)
T 3g5u_A         1250 HGTHQQLLAQK 1260 (1284)
T ss_dssp             EECHHHHHHSC
T ss_pred             ECCHHHHHhCC
Confidence            99999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-40  Score=337.70  Aligned_cols=199  Identities=22%  Similarity=0.338  Sum_probs=158.2

Q ss_pred             eceEEEecCCCCCCCCCCCceeeeeeeEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           34 NALKFTYPGIDGHPPPGSTPLINDFTLTLNAG-----DRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~G-----e~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      ++++++|+.        ...+++++||++.+|     |+++|+||||||||||+|+|+|+++|++|+. +.         
T Consensus       350 ~~~~~~y~~--------~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~---------  411 (608)
T 3j16_B          350 ASRAFSYPS--------LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IP---------  411 (608)
T ss_dssp             SSSCCEECC--------EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CC---------
T ss_pred             cceeEEecC--------cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-cc---------
Confidence            678888852        346899999999999     8899999999999999999999999998852 00         


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-ccC--CCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA--GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~  183 (348)
                         ...+.           +.++........++.+++. ...  ........++++.+++.  .++++.+|||||||||+
T Consensus       412 ---~~~i~-----------~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~  477 (608)
T 3j16_B          412 ---KLNVS-----------MKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVA  477 (608)
T ss_dssp             ---SCCEE-----------EECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHH
T ss_pred             ---CCcEE-----------EecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH
Confidence               01122           2222211111122333221 111  12345567788889886  47789999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEeeecChhHH
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQLAMPMDKV  261 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~~  261 (348)
                      |||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|++  |+++..|+++++
T Consensus       478 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~  557 (608)
T 3j16_B          478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL  557 (608)
T ss_dssp             HHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred             HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence            999999999999999999999999999999999998766799999999999999999999999996  899999999998


Q ss_pred             HHh
Q 018938          262 KEA  264 (348)
Q Consensus       262 ~~~  264 (348)
                      .+.
T Consensus       558 ~~~  560 (608)
T 3j16_B          558 LTG  560 (608)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=6.3e-40  Score=334.41  Aligned_cols=198  Identities=21%  Similarity=0.295  Sum_probs=148.5

Q ss_pred             eEEE--------eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE-----
Q 018938           30 TVEI--------NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV-----   96 (348)
Q Consensus        30 ~l~v--------~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i-----   96 (348)
                      +|++        +||+++|++        ...+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++     
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~--------~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~  153 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGV--------NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD  153 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECST--------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHH
T ss_pred             eEEEecCCccccCCeEEEECC--------CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccc
Confidence            5888        999999952        225899999 999999999999999999999999999999999984     


Q ss_pred             ----EEcCeeccccccccccCcccccchhh--hhhhhhcCCCccccc---cchHHHHHhccCCCCHHHHHHHHHHcCCC-
Q 018938           97 ----KVLGRSAFHDTALTSSGDLSYLGGEW--RREVAFAGFEVPIQM---DVSAEKMIFGVAGIDPQRRAELIKVLDID-  166 (348)
Q Consensus        97 ----~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-  166 (348)
                          .+.|..+..           +.....  ...+++..+......   ..++.+.+... . ..+++.++++.+++. 
T Consensus       154 ~~~~~~~G~~~~~-----------~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-~-~~~~~~~~L~~lgL~~  220 (607)
T 3bk7_A          154 NVIRAFRGNELQN-----------YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-D-EVGKFEEVVKELELEN  220 (607)
T ss_dssp             HHHHHTTTSTHHH-----------HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-C-CSSCHHHHHHHTTCTT
T ss_pred             hhhheeCCEehhh-----------hhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-H-HHHHHHHHHHHcCCCc
Confidence                122221100           000000  001122212111111   11333332211 1 123467889999986 


Q ss_pred             -cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938          167 -LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV  245 (348)
Q Consensus       167 -~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~  245 (348)
                       .++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|+
T Consensus       221 ~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~~~~adri~  299 (607)
T 3bk7_A          221 VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVLDYLSDVIH  299 (607)
T ss_dssp             GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEE
T ss_pred             hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHHhhCCEEE
Confidence             4678999999999999999999999999999999999999999999999999975 49999999999999999999999


Q ss_pred             EEcCC
Q 018938          246 YVAHG  250 (348)
Q Consensus       246 ~l~~G  250 (348)
                      +|+++
T Consensus       300 vl~~~  304 (607)
T 3bk7_A          300 VVYGE  304 (607)
T ss_dssp             EEESC
T ss_pred             EECCC
Confidence            99865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1.3e-39  Score=343.73  Aligned_cols=219  Identities=22%  Similarity=0.328  Sum_probs=153.7

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc---
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF---  104 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~---  104 (348)
                      .++|+++||+|+|++       +.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|....   
T Consensus       669 ~~mL~v~nLs~~Y~g-------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv  741 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPG-------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI  741 (986)
T ss_dssp             SEEEEEEEEEECCTT-------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEE
T ss_pred             CceEEEEeeEEEeCC-------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEee
Confidence            358999999999953       2367999999999999999999999999999999999999999999999763100   


Q ss_pred             cccc---------ccc---------cC-cc--------cccchh---h----------h---------------------
Q 018938          105 HDTA---------LTS---------SG-DL--------SYLGGE---W----------R---------------------  123 (348)
Q Consensus       105 ~~~~---------~~~---------~~-~~--------~~~~~~---~----------~---------------------  123 (348)
                      .+..         ...         .+ ..        .+...+   +          +                     
T Consensus       742 ~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~  821 (986)
T 2iw3_A          742 KQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSF  821 (986)
T ss_dssp             CHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             ccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhh
Confidence            0000         000         00 00        000000   0          0                     


Q ss_pred             ---hhhhhc-----CCCccccccch-------HHH----------HHhcc-CCCCHHHHHHHHHHcCCCc----CccCCC
Q 018938          124 ---REVAFA-----GFEVPIQMDVS-------AEK----------MIFGV-AGIDPQRRAELIKVLDIDL----SWRMHK  173 (348)
Q Consensus       124 ---~~~~~~-----~~~~~~~~~~~-------~~~----------~~~~~-~~~~~~~~~~~l~~l~l~~----~~~~~~  173 (348)
                         ..+.+.     ......+..+.       ...          ...+. .....+++.++++.+++..    ++++.+
T Consensus       822 sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~  901 (986)
T 2iw3_A          822 LLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG  901 (986)
T ss_dssp             EEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGG
T ss_pred             hhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccc
Confidence               000000     00000000000       000          01111 1223566788999999862    567899


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++    .+.|||+||||++++..+||++++|++|+++
T Consensus       902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~----~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv  977 (986)
T 2iw3_A          902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE----FEGGVIIITHSAEFTKNLTEEVWAVKDGRMT  977 (986)
T ss_dssp             CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS----CSSEEEEECSCHHHHTTTCCEEECCBTTBCC
T ss_pred             cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH----hCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999988864    3679999999999999999999999999998


Q ss_pred             eecC
Q 018938          254 LAMP  257 (348)
Q Consensus       254 ~~g~  257 (348)
                      ..|+
T Consensus       978 ~~G~  981 (986)
T 2iw3_A          978 PSGH  981 (986)
T ss_dssp             C---
T ss_pred             EeCC
Confidence            7664

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=5.7e-40  Score=331.15  Aligned_cols=197  Identities=19%  Similarity=0.250  Sum_probs=144.5

Q ss_pred             EEE-eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE---------EEcC
Q 018938           31 VEI-NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV---------KVLG  100 (348)
Q Consensus        31 l~v-~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i---------~i~G  100 (348)
                      .++ +||+|+|++        ...+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++         .++|
T Consensus        21 ~~~~~~ls~~yg~--------~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g   91 (538)
T 1yqt_A           21 EQLEEDCVHRYGV--------NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRG   91 (538)
T ss_dssp             ---CCCEEEECST--------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTT
T ss_pred             hhHhcCcEEEECC--------ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCC
Confidence            455 699999952        225899999 999999999999999999999999999999999984         1222


Q ss_pred             eeccccccccccCcccccchhh--hhhhhhcCCCcccccc---chHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCC
Q 018938          101 RSAFHDTALTSSGDLSYLGGEW--RREVAFAGFEVPIQMD---VSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHK  173 (348)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~  173 (348)
                      ..+...           .....  ...+++..+.......   .+..+.+....  ..+++.++++.+++.  .++++.+
T Consensus        92 ~~~~~~-----------~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~~~~~~  158 (538)
T 1yqt_A           92 NELQNY-----------FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVLEREIQH  158 (538)
T ss_dssp             STHHHH-----------HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTTSBGGG
T ss_pred             ccHHHH-----------HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhhCChhh
Confidence            211000           00000  0011222121111010   12222221111  123467889999986  4678999


Q ss_pred             CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                      |||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|++|++|
T Consensus       159 LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            999999999999999999999999999999999999999999999976 5999999999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=9.6e-38  Score=329.47  Aligned_cols=195  Identities=22%  Similarity=0.291  Sum_probs=153.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|...|++++|+         ++.+|+++||+|++|++++|+||||||||||+|+|+|      |.|  .|.+..     
T Consensus       435 ~L~~~~ls~~yg---------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~-----  492 (986)
T 2iw3_A          435 DLCNCEFSLAYG---------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ-----  492 (986)
T ss_dssp             EEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT-----
T ss_pred             eeEEeeEEEEEC---------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc-----
Confidence            477779999994         4679999999999999999999999999999999995      222  232110     


Q ss_pred             cccCcccccchhhhhhhhhcCCCc-cccccchHHHHHh-ccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMIF-GVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQI  184 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~l  184 (348)
                         ...         .++|++++. .....++..+++. ...+. .+++.++++.+++.   .++++.+|||||||||+|
T Consensus       493 ---~~~---------~~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaL  559 (986)
T 2iw3_A          493 ---EEC---------RTVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLAL  559 (986)
T ss_dssp             ---TTS---------CEEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHH
T ss_pred             ---cce---------eEEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHH
Confidence               000         122332221 1223344444332 11122 56678899999984   367899999999999999


Q ss_pred             HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhHHHH
Q 018938          185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE  263 (348)
Q Consensus       185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  263 (348)
                      ||||+.+|++|||||||+|||+.++..++++|++    .|.|||+||||++++..+||++++|++|+++ +.|+++++..
T Consensus       560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            9999999999999999999999999999999986    4899999999999999999999999999997 6899988764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=5.9e-38  Score=324.70  Aligned_cols=209  Identities=15%  Similarity=0.261  Sum_probs=134.3

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHH---------------------HHHhCCCcCCCceEE-------EcCee
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTIL---------------------KIIGGKHMVEPEMVK-------VLGRS  102 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl---------------------k~i~Gl~~~~~G~i~-------i~G~~  102 (348)
                      ...+|+||||+|++||++||+||||||||||+                     +++.|+..|+.|.|.       ++|..
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~  109 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT  109 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence            35799999999999999999999999999998                     889999888855443       33332


Q ss_pred             ccccccccccCcccccchh------hhhhhhhcC--CCccccccchHHHHH-h--cc--CCCCH----------HHHHHH
Q 018938          103 AFHDTALTSSGDLSYLGGE------WRREVAFAG--FEVPIQMDVSAEKMI-F--GV--AGIDP----------QRRAEL  159 (348)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~-~--~~--~~~~~----------~~~~~~  159 (348)
                      ....    ....+.++.+.      ....+++..  +.......+++.+.+ +  ..  .....          .....+
T Consensus       110 ~~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (670)
T 3ux8_A          110 TSRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF  185 (670)
T ss_dssp             ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred             hhcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence            1110    00111111110      000111110  000001111222111 1  00  00000          011234


Q ss_pred             HHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCCc--EEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh
Q 018938          160 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  234 (348)
Q Consensus       160 l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P~--lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~  234 (348)
                      ++.+++.   .++++.+|||||||||+|||||+.+|+  +|||||||+|||+..+.+++++|+++.+ .|.|||+||||+
T Consensus       186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~  264 (670)
T 3ux8_A          186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDE  264 (670)
T ss_dssp             HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCH
T ss_pred             HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence            7778875   467899999999999999999999998  9999999999999999999999999964 599999999999


Q ss_pred             hhhhhhCCEEEEE------cCCEEeeecChhHHHHhh
Q 018938          235 DGLENWPSHIVYV------AHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       235 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~  265 (348)
                      +++. .||++++|      ++|++++.|+++++....
T Consensus       265 ~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~  300 (670)
T 3ux8_A          265 DTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP  300 (670)
T ss_dssp             HHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred             HHHh-hCCEEEEecccccccCCEEEEecCHHHHhcCc
Confidence            9876 59999999      899999999999987643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=317.49  Aligned_cols=207  Identities=20%  Similarity=0.254  Sum_probs=143.9

Q ss_pred             ceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccC-
Q 018938           35 ALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG-  113 (348)
Q Consensus        35 ~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~-  113 (348)
                      |++++|+.        ....|++++ ++++||++||+||||||||||||+|+|+++|++|+|.....  +........+ 
T Consensus        82 ~~~~~Y~~--------~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~--~~~~~~~~~g~  150 (608)
T 3j16_B           82 HVTHRYSA--------NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPE--WQEIIKYFRGS  150 (608)
T ss_dssp             TEEEECST--------TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSC--HHHHHHHTTTS
T ss_pred             CeEEEECC--------CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccc--hhhhhheecCh
Confidence            57888853        345777777 68999999999999999999999999999999998621110  0000000000 


Q ss_pred             ccc-ccchhhhhhhh--hcCCCcccc------ccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938          114 DLS-YLGGEWRREVA--FAGFEVPIQ------MDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       114 ~~~-~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv  182 (348)
                      .+. +........+.  +..+.....      .................+++.++++.+++.  .++++.+|||||||||
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv  230 (608)
T 3j16_B          151 ELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRF  230 (608)
T ss_dssp             THHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHH
T ss_pred             hhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHH
Confidence            000 00000000000  000000000      000111211111222446778899999986  4778999999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      +|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|++|++|..+
T Consensus       231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~  300 (608)
T 3j16_B          231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCIIYGVPSV  300 (608)
T ss_dssp             HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred             HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence            999999999999999999999999999999999999865 4899999999999999999999999887543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=1.8e-36  Score=313.66  Aligned_cols=108  Identities=24%  Similarity=0.334  Sum_probs=96.4

Q ss_pred             HHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 018938          155 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII  228 (348)
Q Consensus       155 ~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvi  228 (348)
                      +..+.+..+++.   .++++.+|||||||||+|||||+.+|   ++|||||||+|||+.++..++++|+++.+ .|.|||
T Consensus       522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi  600 (670)
T 3ux8_A          522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL  600 (670)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEE
Confidence            445677778875   36788999999999999999999887   59999999999999999999999999975 499999


Q ss_pred             EEecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHh
Q 018938          229 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       229 ivtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~  264 (348)
                      +||||++++. .||||++|      ++|+|++.|+++++.+.
T Consensus       601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~  641 (670)
T 3ux8_A          601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV  641 (670)
T ss_dssp             EECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred             EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence            9999999885 69999999      89999999999998754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.7e-37  Score=310.14  Aligned_cols=198  Identities=18%  Similarity=0.262  Sum_probs=138.6

Q ss_pred             eceEEEecCCCCCCCCCCCceeeeeeeEEe-CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE-----------EEcCe
Q 018938           34 NALKFTYPGIDGHPPPGSTPLINDFTLTLN-AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV-----------KVLGR  101 (348)
Q Consensus        34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~-~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i-----------~i~G~  101 (348)
                      ++.+.+|+.          ..|+-..|.+. +||++||+||||||||||+|+|+|+++|++|+|           .+.|.
T Consensus         3 ~~~~~~~~~----------~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~   72 (538)
T 3ozx_A            3 GEVIHRYKV----------NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK   72 (538)
T ss_dssp             CCEEEESST----------TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTS
T ss_pred             CCCceecCC----------CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCe
Confidence            467889963          23555556654 999999999999999999999999999999986           23332


Q ss_pred             eccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938          102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQR  179 (348)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqr  179 (348)
                      .+.............     ....+.+..+. +.....+..+......  ..+++.++++.+++.  .++++.+||||||
T Consensus        73 ~i~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~  144 (538)
T 3ozx_A           73 EIYNYFKELYSNELK-----IVHKIQYVEYA-SKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWNKDANILSGGGL  144 (538)
T ss_dssp             TTHHHHHHHHTTCCC-----EEEECSCTTGG-GTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTSBGGGCCHHHH
T ss_pred             eHHHHHHHHhhcccc-----hhhccchhhhh-hhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence            210000000000000     00001111000 0000112222221111  123456788889886  4778999999999


Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      |||+|||||+.+|++|||||||++||+.++..++++|+++. + |+|||+||||++++..+||+|++|++|.
T Consensus       145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            99999999999999999999999999999999999999985 4 8999999999999999999999998754

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=1.8e-34  Score=301.74  Aligned_cols=110  Identities=21%  Similarity=0.270  Sum_probs=99.3

Q ss_pred             HHHHHHHHHcCCCc---CccCCCCCHHHHHHHHHHHHHccC---CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 018938          154 QRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKP---FKVLLLDEITVDLDVLARADLLRFLRKECEERGATI  227 (348)
Q Consensus       154 ~~~~~~l~~l~l~~---~~~~~~LSgGqrQRv~lAraL~~~---P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tv  227 (348)
                      .++.++++.+++..   ++++.+|||||||||+||++|+.+   |+||||||||+|||+..+..++++|+++++ .|.||
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tV  786 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTV  786 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence            34567888899853   678999999999999999999996   799999999999999999999999999875 59999


Q ss_pred             EEEecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHhh
Q 018938          228 IYATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       228 iivtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~  265 (348)
                      |+||||++++ .+||+|++|      ++|+|++.|+++++....
T Consensus       787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~  829 (842)
T 2vf7_A          787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA  829 (842)
T ss_dssp             EEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred             EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence            9999999999 689999999      799999999999987543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=2.4e-33  Score=295.55  Aligned_cols=110  Identities=23%  Similarity=0.370  Sum_probs=98.6

Q ss_pred             HHHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 018938          154 QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATI  227 (348)
Q Consensus       154 ~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tv  227 (348)
                      .+..++++.+|+.   ..+++.+|||||||||+|||||+.+|   +||||||||+|||+..+..++++|+++.+ .|.||
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TV  861 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTV  861 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Confidence            3456778888885   36788999999999999999999875   79999999999999999999999999864 59999


Q ss_pred             EEEecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHhh
Q 018938          228 IYATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEAS  265 (348)
Q Consensus       228 iivtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~  265 (348)
                      |+||||++++.. ||+|++|      ++|+|++.|+++++.+.+
T Consensus       862 IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~  904 (916)
T 3pih_A          862 IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKNP  904 (916)
T ss_dssp             EEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred             EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence            999999999865 9999999      899999999999998644

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=5.1e-33  Score=291.65  Aligned_cols=108  Identities=24%  Similarity=0.334  Sum_probs=97.3

Q ss_pred             HHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 018938          155 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII  228 (348)
Q Consensus       155 ~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvi  228 (348)
                      +..++++.+++.   .++++.+|||||||||+||++|+.+|   +||||||||+|||+..+..++++|+++.+ .|.|||
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI  902 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL  902 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence            345788888885   36789999999999999999999865   99999999999999999999999999865 599999


Q ss_pred             EEecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHh
Q 018938          229 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       229 ivtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~  264 (348)
                      +||||++++. +||+|++|      ++|++++.|+++++...
T Consensus       903 visHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~  943 (972)
T 2r6f_A          903 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV  943 (972)
T ss_dssp             EECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred             EEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence            9999999985 79999999      78999999999998764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.7e-36  Score=298.34  Aligned_cols=194  Identities=13%  Similarity=0.122  Sum_probs=142.1

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-e-EEEcCeeccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-M-VKVLGRSAFH  105 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~-i~i~G~~~~~  105 (348)
                      .++++++||+++|         +      ++||++++|++++|+||||||||||+|+|+|++.|++| + |.++|..   
T Consensus       116 ~~mi~~~nl~~~y---------~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~---  177 (460)
T 2npi_A          116 HTMKYIYNLHFML---------E------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDP---  177 (460)
T ss_dssp             CTHHHHHHHHHHH---------H------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCT---
T ss_pred             cchhhhhhhhehh---------h------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCc---
Confidence            4678899999888         2      69999999999999999999999999999999999999 8 9998721   


Q ss_pred             cccccccCcccccchhhhhhhhhcCCCccc---cccchHHHHHhccC---C-CCHHHHHHHHHHcCCCcCccCCCCCHHH
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFEVPI---QMDVSAEKMIFGVA---G-IDPQRRAELIKVLDIDLSWRMHKVSDGQ  178 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~-~~~~~~~~~l~~l~l~~~~~~~~LSgGq  178 (348)
                            ...+           +++++....   ...++..+..++..   + ...+++.++++.+|+.....+.+|||||
T Consensus       178 ------~~~i-----------~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq  240 (460)
T 2npi_A          178 ------QQPI-----------FTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLEC  240 (460)
T ss_dssp             ------TSCS-----------SSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHH
T ss_pred             ------cCCe-----------eeeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHH
Confidence                  0112           222222110   01111111112110   1 0112233455566665322378999999


Q ss_pred             HHHHHHHHH--HccCCcE----EEeec-cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh------hhhhhCCE--
Q 018938          179 RRRVQICMG--LLKPFKV----LLLDE-ITVDLDVLARADLLRFLRKECEERGATIIYATHIFD------GLENWPSH--  243 (348)
Q Consensus       179 rQRv~lAra--L~~~P~l----LlLDE-PtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~------~~~~~~d~--  243 (348)
                      ||||+||||  |+.+|++    ||||| ||++||+. +..+.+++    ++.+.|+|+||||.+      ++..+||+  
T Consensus       241 ~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~~~~tviiVth~~~~~l~~~~~~~~~dr~~  315 (460)
T 2npi_A          241 ISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EKLNVNIMLVLCSETDPLWEKVKKTFGPELG  315 (460)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HHTTCCEEEEECCSSCTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HHhCCCEEEEEccCchhhhHHHHHHhccccc
Confidence            999999999  9999999    99999 99999998 44444444    445889999999988      88899999  


Q ss_pred             ---EEEEc-CCEEeeecChhHHH
Q 018938          244 ---IVYVA-HGKLQLAMPMDKVK  262 (348)
Q Consensus       244 ---v~~l~-~G~i~~~g~~~~~~  262 (348)
                         |++|+ +|+++ .++++++.
T Consensus       316 ~~~vi~l~k~G~iv-~g~~~~~~  337 (460)
T 2npi_A          316 NNNIFFIPKLDGVS-AVDDVYKR  337 (460)
T ss_dssp             GGGEEEECCCTTCC-CCCHHHHH
T ss_pred             CCEEEEEeCCCcEE-ECCHHHHh
Confidence               99999 99999 88887764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.97  E-value=2.3e-31  Score=259.95  Aligned_cols=80  Identities=16%  Similarity=0.199  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE----
Q 018938          174 VSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV----  247 (348)
Q Consensus       174 LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l----  247 (348)
                      |||||||||+||++|+.+|  ++|||||||+|||+..+..+.++|+++.  .|.|||+||||++++ .+||++++|    
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~~-~~~d~i~~l~k~~  372 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQIA-ARAHHHYKVEKQV  372 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHH-hhcCeEEEEEEec
Confidence            7999999999999999999  9999999999999999999999999986  389999999999887 579999999    


Q ss_pred             cCCEEeeec
Q 018938          248 AHGKLQLAM  256 (348)
Q Consensus       248 ~~G~i~~~g  256 (348)
                      ++|+++...
T Consensus       373 ~~G~~~~~~  381 (415)
T 4aby_A          373 EDGRTVSHV  381 (415)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCceEEEE
Confidence            999987653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.96  E-value=3.4e-31  Score=228.68  Aligned_cols=146  Identities=11%  Similarity=0.058  Sum_probs=99.0

Q ss_pred             eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc--
Q 018938           57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP--  134 (348)
Q Consensus        57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  134 (348)
                      ||||++++||+++|+||||||||||+|++.+-      ...+.+                    +..+  ++..+...  
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~--------------------d~~~--g~~~~~~~~~   52 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISS--------------------DFCR--GLMSDDENDQ   52 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEH--------------------HHHH--HHHCSSTTCG
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEcc--------------------HHHH--HHhcCcccch
Confidence            68999999999999999999999999986541      111110                    0000  11111110  


Q ss_pred             ccccchHHHHHhccCCCCHHHHHHHHHHcCCC-cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHH------
Q 018938          135 IQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL------  207 (348)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~------  207 (348)
                      ..........         ..........+.. ........|||||||++||||++.+|++|+|||||++||+.      
T Consensus        53 ~~~~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~  123 (171)
T 4gp7_A           53 TVTGAAFDVL---------HYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD  123 (171)
T ss_dssp             GGHHHHHHHH---------HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred             hhHHHHHHHH---------HHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence            0000000000         0011111222332 12234567999999999999999999999999999999999      


Q ss_pred             ----------HHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh
Q 018938          208 ----------ARADLLRFLRKECEERGATIIYATHIFDGLENW  240 (348)
Q Consensus       208 ----------~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~  240 (348)
                                .+..+++.|+++.++ |.|+|++|||++++..+
T Consensus       124 ~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A          124 RQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             CCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHHHHE
T ss_pred             CCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHhhhh
Confidence                      668899999888766 99999999999999763

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.96  E-value=1.1e-29  Score=244.77  Aligned_cols=85  Identities=15%  Similarity=0.194  Sum_probs=78.0

Q ss_pred             CccCCCCCHHHHHHHHHHHHHc------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhC
Q 018938          168 SWRMHKVSDGQRRRVQICMGLL------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  241 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~  241 (348)
                      ++++.+|||||||||+||+||+      .+|++|||||||+|||+.++..++++|+++.+ .|.|||+||||+++ ...|
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~  351 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAF  351 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhC
Confidence            3567899999999999999999      79999999999999999999999999999864 59999999999998 5679


Q ss_pred             CEEEEEcCCEEee
Q 018938          242 SHIVYVAHGKLQL  254 (348)
Q Consensus       242 d~v~~l~~G~i~~  254 (348)
                      |++++|++|+++.
T Consensus       352 d~~~~l~~G~i~~  364 (365)
T 3qf7_A          352 DRKLRITGGVVVN  364 (365)
T ss_dssp             SCEEEEETTEEC-
T ss_pred             CEEEEEECCEEEe
Confidence            9999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.95  E-value=3.4e-31  Score=235.98  Aligned_cols=157  Identities=14%  Similarity=0.130  Sum_probs=98.6

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG  130 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      ++.+|+++    ++||+++|+||||||||||+|+|+|+ +|++|+|..  ...... .           ...++.++|++
T Consensus        12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~-~-----------~~~~~~ig~v~   72 (208)
T 3b85_A           12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRP-A-----------VEAGEKLGFLP   72 (208)
T ss_dssp             HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEEC-S-----------CCTTCCCCSSC
T ss_pred             HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCC-c-----------hhhhcceEEec
Confidence            46789986    89999999999999999999999999 999999832  211100 0           01123345554


Q ss_pred             CCccccc-cc--hHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHH
Q 018938          131 FEVPIQM-DV--SAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL  207 (348)
Q Consensus       131 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~  207 (348)
                      +....+. .+  ........  ......+.++++. ++           ||||||+|||||+.+|++|||||||++    
T Consensus        73 q~~~enl~~~~~~~~~~~~~--~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~----  134 (208)
T 3b85_A           73 GTLNEKIDPYLRPLHDALRD--MVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT----  134 (208)
T ss_dssp             C------CTTTHHHHHHHTT--TSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred             CCHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence            4321111 01  00111111  0122334455554 32           999999999999999999999999999    


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          208 ARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       208 ~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      ++..++++|+++ + .|.||| ||||++++..    ...+++|.
T Consensus       135 ~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~----~~~~~~G~  171 (208)
T 3b85_A          135 TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL----PGGQKSGL  171 (208)
T ss_dssp             CHHHHHHHHTTB-C-TTCEEE-EEEC----------------CC
T ss_pred             cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC----cCCCCCcH
Confidence            888999999887 3 489999 9999987653    33345553

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.94  E-value=6.6e-27  Score=221.60  Aligned_cols=90  Identities=20%  Similarity=0.303  Sum_probs=74.5

Q ss_pred             CccCCCCCHHHHHHHHHHHHHc----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  243 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~  243 (348)
                      +.++.+||||||||++||+||+    .+|++|||||||++||+..+..++++|+++.  .|.|||++||+.+ +..+||+
T Consensus       214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~-~~~~~d~  290 (322)
T 1e69_A          214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI-VMEAADL  290 (322)
T ss_dssp             CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT-GGGGCSE
T ss_pred             cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH-HHhhCce
Confidence            3457899999999999999997    6899999999999999999999999999873  3789999999965 5678998


Q ss_pred             E--EEEcCCEEe-eecChhH
Q 018938          244 I--VYVAHGKLQ-LAMPMDK  260 (348)
Q Consensus       244 v--~~l~~G~i~-~~g~~~~  260 (348)
                      +  ++|.+|... .....++
T Consensus       291 ~~~v~~~~g~s~~~~~~~~~  310 (322)
T 1e69_A          291 LHGVTMVNGVSAIVPVEVEK  310 (322)
T ss_dssp             EEEEEESSSCEEEEECCC--
T ss_pred             EEEEEEeCCEEEEEEEEcch
Confidence            7  788888653 3344443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.93  E-value=2.4e-29  Score=245.00  Aligned_cols=174  Identities=12%  Similarity=0.148  Sum_probs=127.8

Q ss_pred             CceeeeeeeEEeCCC--------------------EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938           52 TPLINDFTLTLNAGD--------------------RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS  111 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge--------------------~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~  111 (348)
                      +.+|++|||+|++|+                    +++|+||||||||||+|+|+|++.|++|+|.++|.....      
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~------  109 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM------  109 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C------
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce------
Confidence            468999999999999                    999999999999999999999999999999888754310      


Q ss_pred             cCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHHcCCCc-CccCCCCCHH--HHHHHHHHHH
Q 018938          112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKVLDIDL-SWRMHKVSDG--QRRRVQICMG  187 (348)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~LSgG--qrQRv~lAra  187 (348)
                      .   .++.+           . +....++..+. .++..   .....++++.+++.. +..+. ||+|  |+||++||+|
T Consensus       110 ~---~~v~q-----------~-~~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~a  170 (413)
T 1tq4_A          110 E---RHPYK-----------H-PNIPNVVFWDLPGIGST---NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKA  170 (413)
T ss_dssp             C---CEEEE-----------C-SSCTTEEEEECCCGGGS---SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHH
T ss_pred             e---EEecc-----------c-cccCCeeehHhhcccch---HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHH
Confidence            0   11111           0 00000110000 00111   123567788887653 33344 9999  9999999999


Q ss_pred             Hcc----------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHH----hc----CcEEEEEecChhh--hhhhCCEEE-E
Q 018938          188 LLK----------PFKVLLLDEITVDLDVLARADLLRFLRKECE----ER----GATIIYATHIFDG--LENWPSHIV-Y  246 (348)
Q Consensus       188 L~~----------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~----~~----g~tviivtHd~~~--~~~~~d~v~-~  246 (348)
                      |+.          +|++++|||||+|||+..+.++++.|+++++    +.    ..+|+++||+++.  ++.+||++. .
T Consensus       171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~  250 (413)
T 1tq4_A          171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD  250 (413)
T ss_dssp             HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred             HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHh
Confidence            999          9999999999999999999999999999852    22    3679999999998  999999885 4


Q ss_pred             EcCC
Q 018938          247 VAHG  250 (348)
Q Consensus       247 l~~G  250 (348)
                      |..|
T Consensus       251 Lpeg  254 (413)
T 1tq4_A          251 LPIY  254 (413)
T ss_dssp             SCGG
T ss_pred             Cccc
Confidence            4444

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.93  E-value=4.1e-27  Score=204.63  Aligned_cols=148  Identities=14%  Similarity=0.083  Sum_probs=99.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF  146 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (348)
                      +++|+||||||||||+|+|+|++.     +.++|........           ...++.++|..+.......+      +
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~-----------~~~~~~ig~~~~~~~~~~~~------~   59 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRD-----------PETKKRTGFRIITTEGKKKI------F   59 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-----------------CCEEEEEETTCCEEE------E
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhcc-----------ccccceeEEEeecCcHHHHH------H
Confidence            689999999999999999999863     4455543210000           00112233332211000000      0


Q ss_pred             ccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHH-----HccCCcEEEeec--cCCCCCHHHHHHHHHHHHHH
Q 018938          147 GVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG-----LLKPFKVLLLDE--ITVDLDVLARADLLRFLRKE  219 (348)
Q Consensus       147 ~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAra-----L~~~P~lLlLDE--PtsgLD~~~~~~l~~~l~~l  219 (348)
                      .......          .-..++++.+||||||||++||+|     |+.+|++|||||  ||++||+..+..+.+++.+ 
T Consensus        60 ~~~~~~~----------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~-  128 (178)
T 1ye8_A           60 SSKFFTS----------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD-  128 (178)
T ss_dssp             EETTCCC----------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-
T ss_pred             HhhcCCc----------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-
Confidence            0000000          001356778999999999999996     999999999999  9999999999998888864 


Q ss_pred             HHhcCcEEEEEe---cChhhhhhhCCEEEEEcCCEEee
Q 018938          220 CEERGATIIYAT---HIFDGLENWPSHIVYVAHGKLQL  254 (348)
Q Consensus       220 ~~~~g~tviivt---Hd~~~~~~~~d~v~~l~~G~i~~  254 (348)
                         .+.|+|++|   ||++++..+|++    .+|++++
T Consensus       129 ---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~  159 (178)
T 1ye8_A          129 ---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE  159 (178)
T ss_dssp             ---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred             ---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence               477788888   599999999998    4566654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.92  E-value=3.7e-29  Score=234.47  Aligned_cols=163  Identities=10%  Similarity=0.070  Sum_probs=115.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      +|+++||+|+|+          .++|+++||+|++|++++|+||||||||||+++|+|++   +|+|...+..   ..  
T Consensus       101 ~i~~~~vs~~y~----------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q---~~--  162 (305)
T 2v9p_A          101 FFNYQNIELITF----------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANH---KS--  162 (305)
T ss_dssp             HHHHTTCCHHHH----------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGT---TS--
T ss_pred             eEEEEEEEEEcC----------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecC---cc--
Confidence            478999999993          46999999999999999999999999999999999986   7887543210   00  


Q ss_pred             cccCcccccchhhhh-hhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRR-EVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL  188 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL  188 (348)
                            .+.....+. .+.+.       ..            .. ....+.++.+ +........||||||||   ||||
T Consensus       163 ------~lf~~ti~~~ni~~~-------~~------------~~-~~~~~~i~~~-L~~gldg~~LSgGqkQR---ARAl  212 (305)
T 2v9p_A          163 ------HFWLASLADTRAALV-------DD------------AT-HACWRYFDTY-LRNALDGYPVSIDRKHK---AAVQ  212 (305)
T ss_dssp             ------GGGGGGGTTCSCEEE-------EE------------EC-HHHHHHHHHT-TTGGGGTCCEECCCSSC---CCCE
T ss_pred             ------ccccccHHHHhhccC-------cc------------cc-HHHHHHHHHH-hHccCCccCcCHHHHHH---HHHH
Confidence                  000000110 11110       00            01 1223344442 22111178999999999   9999


Q ss_pred             ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      +.+|+|||    |++||+.++..+..               +||++..+ .+||+| +|++|++++.|+.+++
T Consensus       213 l~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          213 IKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             ECCCCEEE----EESSCSTTCGGGGG---------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred             hCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence            99999999    99999998887752               29998876 579999 9999999999999887

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.92  E-value=6.3e-28  Score=214.22  Aligned_cols=171  Identities=9%  Similarity=0.020  Sum_probs=99.9

Q ss_pred             CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938           50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA  129 (348)
Q Consensus        50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (348)
                      +..+++.|  .+|++||+++|+||||||||||+|+|+|+++    .+.+.+........   .+        .++.++|.
T Consensus         7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~---~~--------~~~~i~~~   69 (207)
T 1znw_A            7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPR---PG--------EVDGVDYH   69 (207)
T ss_dssp             --------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCC---TT--------CCBTTTBE
T ss_pred             CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCc---cc--------ccCCCeeE
Confidence            45678888  7999999999999999999999999999874    34444322110000   00        01122333


Q ss_pred             CCCccccccchHHHHH------h---ccCCCCHHHHHHHH----------HHcCCC--cCccCCCCCHHHHHHHHHHHHH
Q 018938          130 GFEVPIQMDVSAEKMI------F---GVAGIDPQRRAELI----------KVLDID--LSWRMHKVSDGQRRRVQICMGL  188 (348)
Q Consensus       130 ~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~l----------~~l~l~--~~~~~~~LSgGqrQRv~lAraL  188 (348)
                      ++....+..++..+.+      +   ...+.......+.+          +.+++.  .++++.+||           +|
T Consensus        70 ~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l  138 (207)
T 1znw_A           70 FIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VF  138 (207)
T ss_dssp             ECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EE
T ss_pred             ecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EE
Confidence            2221111111111100      0   00111222222222          122221  134566676           89


Q ss_pred             ccCCcEEEeeccCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          189 LKPFKVLLLDEITVDL----DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       189 ~~~P~lLlLDEPtsgL----D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +.+|++++|||||+++    |+..+..++++++++.++.|.|||+||||++++..+||+|++|.
T Consensus       139 ~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          139 LAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             EECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             EECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence            9999999999999998    78899999999999976678999999999999999999999884

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.91  E-value=4.2e-25  Score=211.71  Aligned_cols=84  Identities=21%  Similarity=0.223  Sum_probs=75.9

Q ss_pred             cCC-CCCHHHHHHHHHHHHHc---------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938          170 RMH-KVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN  239 (348)
Q Consensus       170 ~~~-~LSgGqrQRv~lAraL~---------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~  239 (348)
                      ++. .||||||||++||++|+         .+|+||||||||++||+..+..+++.|.++.    .|+|++||+ +.   
T Consensus       261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~---  332 (359)
T 2o5v_A          261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP---  332 (359)
T ss_dssp             EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT---
T ss_pred             chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc---
Confidence            345 79999999999999999         8999999999999999999999999998752    699999994 44   


Q ss_pred             hCCEEEEEcCCEEeeecChhHH
Q 018938          240 WPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       240 ~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      .||++++|++|+++..|+++++
T Consensus       333 ~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             TCSEEEEEETTEEEECCCTTTS
T ss_pred             cCCEEEEEECCEEEecCCHHHH
Confidence            8999999999999999988765

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.91  E-value=9.5e-25  Score=203.89  Aligned_cols=182  Identities=17%  Similarity=0.148  Sum_probs=118.8

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG  130 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      .++|+++++.|++|++++|+||||||||||+++|+|...+..| .|.+.+....              ...+...+....
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--------------~~~~~~r~~~~~   87 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--------------VEETAEDLIGLH   87 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--------------HHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--------------HHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999888877 6654332110              001112222111


Q ss_pred             CCcccc--ccchHHHHHhccCCCC-HHHHHHHHHHcCCCcCccCCCCCHHH-HHHHHHHHHHccCCcEEEeeccCC---C
Q 018938          131 FEVPIQ--MDVSAEKMIFGVAGID-PQRRAELIKVLDIDLSWRMHKVSDGQ-RRRVQICMGLLKPFKVLLLDEITV---D  203 (348)
Q Consensus       131 ~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~LSgGq-rQRv~lAraL~~~P~lLlLDEPts---g  203 (348)
                      +.....  ..+....+    .... .+...++++...+.....+..+|.++ +||+. |+++..+|++||+||||+   +
T Consensus        88 ~~~~~~~~~~l~~~~~----~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~  162 (296)
T 1cr0_A           88 NRVRLRQSDSLKREII----ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA  162 (296)
T ss_dssp             TTCCGGGCHHHHHHHH----HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred             cCCChhhccccccCCC----CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence            111110  01111100    0000 11122333222232333446789998 66776 999999999999999999   5


Q ss_pred             ---CCH-HHHHHHHHHHHHHHHhcCcEEEEEecCh--h--------------------hhhhhCCEEEEEcCCEE
Q 018938          204 ---LDV-LARADLLRFLRKECEERGATIIYATHIF--D--------------------GLENWPSHIVYVAHGKL  252 (348)
Q Consensus       204 ---LD~-~~~~~l~~~l~~l~~~~g~tviivtHd~--~--------------------~~~~~~d~v~~l~~G~i  252 (348)
                         +|. .....+++.|++++++.|+|||++||+.  +                    .+.++||+|++|++|+.
T Consensus       163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence               565 6778899999999888899999999995  5                    78889999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.91  E-value=1.5e-27  Score=213.84  Aligned_cols=155  Identities=12%  Similarity=0.021  Sum_probs=91.2

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      ...|+||||+|++|++++|+||||||||||+++|+|++ |  |.|.+ |.+........  .        .+..++|.++
T Consensus        10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~--~--------~~~~i~~~~~   75 (218)
T 1z6g_A           10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKRE--K--------EKEGVDYYFI   75 (218)
T ss_dssp             ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCS--S--------CCBTTTBEEC
T ss_pred             cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCc--c--------cccCCeEEEC
Confidence            45799999999999999999999999999999999987 5  99988 75432211100  0        0111222222


Q ss_pred             CccccccchH-HHHHh------ccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHH-----HHHHccCCcEEEeec
Q 018938          132 EVPIQMDVSA-EKMIF------GVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQI-----CMGLLKPFKVLLLDE  199 (348)
Q Consensus       132 ~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~l-----AraL~~~P~lLlLDE  199 (348)
                      ....+...+. .+++.      ...+.....+.++++...+..  ...+|||||+||++|     |++|+.+|++++|||
T Consensus        76 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~i--l~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde  153 (218)
T 1z6g_A           76 DKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICL--FEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS  153 (218)
T ss_dssp             CHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEE--EEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred             CHHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEE--EEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence            1111110000 00000      001112334555555433211  125789999999999     899999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHh
Q 018938          200 ITVDLDVLARADLLRFLRKECEE  222 (348)
Q Consensus       200 PtsgLD~~~~~~l~~~l~~l~~~  222 (348)
                      ||+++|..+...+.+.|.++.++
T Consensus       154 ~~~~~d~~~~~~i~~~l~~~~~~  176 (218)
T 1z6g_A          154 RLLTRNTENQEQIQKRMEQLNIE  176 (218)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999988876543

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.91  E-value=6.3e-24  Score=202.54  Aligned_cols=78  Identities=23%  Similarity=0.352  Sum_probs=70.0

Q ss_pred             ccCCCCCHHHHH------HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938          169 WRMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS  242 (348)
Q Consensus       169 ~~~~~LSgGqrQ------Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d  242 (348)
                      +++.+|||||||      |+++|++|+.+|++|||||||+|||+..+..++++|+++.++ |.|||+||||.+ +..+||
T Consensus       244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~-~~~~~d  321 (339)
T 3qkt_A          244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE-LKDAAD  321 (339)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG-GGGGCS
T ss_pred             CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH-HHHhCC
Confidence            467899999999      678888999999999999999999999999999999998654 889999999965 567899


Q ss_pred             EEEEEc
Q 018938          243 HIVYVA  248 (348)
Q Consensus       243 ~v~~l~  248 (348)
                      ++++|.
T Consensus       322 ~~~~l~  327 (339)
T 3qkt_A          322 HVIRIS  327 (339)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999885

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.90  E-value=2.3e-26  Score=215.89  Aligned_cols=179  Identities=20%  Similarity=0.198  Sum_probs=124.4

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhh--hhhhhhcCC
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW--RREVAFAGF  131 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  131 (348)
                      +++++||++++|++++|+||||||||||+++|+|++.|+.|+|.+.|.+.+.....   .++    ..+  +..+++.++
T Consensus        89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~---~ql----~~~~~~~~i~~v~q  161 (302)
T 3b9q_A           89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAAS---DQL----EIWAERTGCEIVVA  161 (302)
T ss_dssp             CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHH---HHH----HHHHHHHTCEEECC
T ss_pred             cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHH---HHH----HHHHHhcCceEEEe
Confidence            34678999999999999999999999999999999999999999998765421100   000    012  224555544


Q ss_pred             Ccc-ccccchHHHHH-hcc-CCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCc--EEEeeccCCCC
Q 018938          132 EVP-IQMDVSAEKMI-FGV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDL  204 (348)
Q Consensus       132 ~~~-~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~--lLlLDEPtsgL  204 (348)
                      ... ..+..+..+.+ +.. .+.+    ..+++.+|+.  .++++.+||   |||++|||||+.+|+  +|+|| ||+||
T Consensus       162 ~~~~~~~~~~v~e~l~~~~~~~~d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl  233 (302)
T 3b9q_A          162 EGDKAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL  233 (302)
T ss_dssp             C--CCCHHHHHHHHHHHHHHTTCS----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred             cCCccCHHHHHHHHHHHHHHcCCc----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence            433 33333333322 111 1111    1123344443  234577899   999999999999999  99999 99999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEec---------ChhhhhhhCCEEEEEcCCEEe
Q 018938          205 DVLARADLLRFLRKECEERGATIIYATH---------IFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       205 D~~~~~~l~~~l~~l~~~~g~tviivtH---------d~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |+..+      ++++.++.|.|+|++||         .++.+..++..|.++..|+.+
T Consensus       234 D~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~  285 (302)
T 3b9q_A          234 NMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  285 (302)
T ss_dssp             GGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             CHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence            99754      24455556899999999         566777788899999999754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.90  E-value=9.8e-27  Score=222.34  Aligned_cols=203  Identities=14%  Similarity=0.168  Sum_probs=138.0

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .++++++++++.|+.        +..+|+++ |+|.+|++++|+||||||||||+++|+|+..|+.|.+.+.|+....-.
T Consensus        43 ~~~i~~~~l~~~~~t--------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~  113 (347)
T 2obl_A           43 PDPLLRQVIDQPFIL--------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVN  113 (347)
T ss_dssp             SCSTTCCCCCSEECC--------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH
T ss_pred             CCCeeecccceecCC--------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHH
Confidence            357899999999952        46799999 999999999999999999999999999999999998888875321000


Q ss_pred             cccccCcccccch-hhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHH
Q 018938          108 ALTSSGDLSYLGG-EWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       108 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~  183 (348)
                      .     .+.+... .+.+.+.+..+...    ..........   ......+.....+..   .-..+..||+|| |||+
T Consensus       114 ~-----~i~~~~~~~~~~~v~~~~~~~~----~~~~r~~~~~---~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~  180 (347)
T 2obl_A          114 E-----FLALLPQSTLSKCVLVVTTSDR----PALERMKAAF---TATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVG  180 (347)
T ss_dssp             H-----HHTTSCHHHHTTEEEEEECTTS----CHHHHHHHHH---HHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHH
T ss_pred             H-----HHHhhhhhhhhceEEEEECCCC----CHHHHHHHHH---HHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHH
Confidence            0     0000000 01111112111100    0000000000   000011111111111   114578899999 9999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHH-hcCc-----EEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE-ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~~g~-----tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      +|   +.+|++      |+||||..+..+.+++.++.+ +.|.     ||+++|||++  +.+||++++|.+|+|+.+++
T Consensus       181 la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~  249 (347)
T 2obl_A          181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRE  249 (347)
T ss_dssp             HH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHH
T ss_pred             HH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCC
Confidence            99   688887      999999999999999998764 4577     9999999999  67999999999999999998


Q ss_pred             hhHHHH
Q 018938          258 MDKVKE  263 (348)
Q Consensus       258 ~~~~~~  263 (348)
                      ++++..
T Consensus       250 l~~~~~  255 (347)
T 2obl_A          250 LAEENH  255 (347)
T ss_dssp             HHTTTC
T ss_pred             HHHcCC
Confidence            877643

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.90  E-value=1.5e-26  Score=227.53  Aligned_cols=200  Identities=15%  Similarity=0.151  Sum_probs=143.4

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee---ccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS---AFH  105 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~---~~~  105 (348)
                      ++++++++++.|+.        +..+|+++ |+|.+|++++|+||||||||||+++|+|+..|+.|.|.+.|+.   +..
T Consensus       130 ~~l~~~~v~~~~~t--------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~  200 (438)
T 2dpy_A          130 NPLQRTPIEHVLDT--------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKD  200 (438)
T ss_dssp             CTTTSCCCCSBCCC--------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHH
T ss_pred             CceEEeccceecCC--------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHH
Confidence            56899999999952        46799999 9999999999999999999999999999999999999998862   210


Q ss_pred             cccccccCcccccchhhhhhhhhcCCC-ccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHH
Q 018938          106 DTALTSSGDLSYLGGEWRREVAFAGFE-VPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRR  181 (348)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQR  181 (348)
                      ...    ...  -...+++.+++.++. .+....++..+....        ..+....-+-.   .-..+..||+|| ||
T Consensus       201 ~~~----~~~--~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~--------~ae~~~~~~~~v~~~ld~l~~lS~g~-qr  265 (438)
T 2dpy_A          201 FIE----NIL--GPDGRARSVVIAAPADVSPLLRMQGAAYATR--------IAEDFRDRGQHVLLIMDSLTRYAMAQ-RE  265 (438)
T ss_dssp             HHH----TTT--HHHHHHTEEEEEECTTSCHHHHHHHHHHHHH--------HHHHHHTTTCEEEEEEECHHHHHHHH-HH
T ss_pred             HHH----hhc--cccccCceEEEEECCCCCHHHHHHHHHHHHH--------HHHHHHhCCCCHHHHHHhHHHHHHHH-HH
Confidence            000    000  001233445555442 222233333222110        01111111100   112357899999 99


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHH---hcCc-----EEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE---ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~---~~g~-----tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |+||   +.+|++      |+|||+..+..+.+++.++.+   +.|.     ||+++|||++  ..+||++++|.+|+++
T Consensus       266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv  334 (438)
T 2dpy_A          266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIV  334 (438)
T ss_dssp             HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE
T ss_pred             HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEE
Confidence            9999   888988      999999999999999998765   2364     9999999999  6789999999999999


Q ss_pred             eecChhHHHH
Q 018938          254 LAMPMDKVKE  263 (348)
Q Consensus       254 ~~g~~~~~~~  263 (348)
                      ..+++.++..
T Consensus       335 l~~~~~~~~~  344 (438)
T 2dpy_A          335 LSRRLAEAGH  344 (438)
T ss_dssp             ECHHHHHTTC
T ss_pred             EeCCHHHccC
Confidence            9998877654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.89  E-value=5.1e-26  Score=229.05  Aligned_cols=181  Identities=17%  Similarity=0.172  Sum_probs=117.3

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeee-EEeCCCEEEEECCCCCcHHHHHHH--HhCCCcCCCceEEEcCeecc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTL-TLNAGDRCLLVGSNGAGKTTILKI--IGGKHMVEPEMVKVLGRSAF  104 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~--i~Gl~~~~~G~i~i~G~~~~  104 (348)
                      .++++.+++.+.+         ++.++|+++|| .|++|++++|+||||||||||+++  ++|+++|++|.|+++|....
T Consensus        10 ~~~~~~~~~~~~~---------~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~   80 (525)
T 1tf7_A           10 NNNSEHQAIAKMR---------TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP   80 (525)
T ss_dssp             ----CCSSCCEEC---------CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred             CCCcccccccccc---------CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH
Confidence            3457777776544         34789999999 999999999999999999999999  78999889999999986421


Q ss_pred             ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938          105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv  182 (348)
                      ...            ....+.++|..+.......      ++...........++++.+++.  .++.+.+||||     
T Consensus        81 ~~~------------~~~~~~~g~~~q~~~~~~~------l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g-----  137 (525)
T 1tf7_A           81 QDI------------IKNARSFGWDLAKLVDEGK------LFILDASPDPEGQEVVGGFDLSALIERINYAIQKY-----  137 (525)
T ss_dssp             HHH------------HHHHGGGTCCHHHHHHTTS------EEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHH-----
T ss_pred             HHH------------HHHHHHcCCChHHhhccCc------EEEEecCcccchhhhhcccCHHHHHHHHHHHHHHc-----
Confidence            100            0112233333221110000      0000000000000011111110  12233445554     


Q ss_pred             HHHHHHccCCcEEEeeccCC-----CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh---------hhhCCEEEEEc
Q 018938          183 QICMGLLKPFKVLLLDEITV-----DLDVLARADLLRFLRKECEERGATIIYATHIFDGL---------ENWPSHIVYVA  248 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPts-----gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~---------~~~~d~v~~l~  248 (348)
                              +|++++|||||+     +||+..+..++++++.+++ .|+|||++||+++++         ..+||+|++|+
T Consensus       138 --------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~  208 (525)
T 1tf7_A          138 --------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR  208 (525)
T ss_dssp             --------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             --------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEE
Confidence                    588999999998     4699999999999999875 599999999999985         56699999999


Q ss_pred             C
Q 018938          249 H  249 (348)
Q Consensus       249 ~  249 (348)
                      +
T Consensus       209 ~  209 (525)
T 1tf7_A          209 N  209 (525)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.89  E-value=2e-25  Score=212.16  Aligned_cols=133  Identities=14%  Similarity=0.113  Sum_probs=105.6

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV  133 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (348)
                      +++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|......         .    ..+..+++.    
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~---------~----~~~~~i~~~----  222 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF---------K----HHKNYTQLF----  222 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC---------S----SCSSEEEEE----
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc---------c----cchhEEEEE----
Confidence            78999999999999999999999999999999999999999999987531100         0    000001000    


Q ss_pred             cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHH
Q 018938          134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  213 (348)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~  213 (348)
                                     .                       .  |||+||++||+||..+|++|||||||+.       +++
T Consensus       223 ---------------~-----------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~  255 (330)
T 2pt7_A          223 ---------------F-----------------------G--GNITSADCLKSCLRMRPDRIILGELRSS-------EAY  255 (330)
T ss_dssp             ---------------C-----------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHH
T ss_pred             ---------------e-----------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHH
Confidence                           0                       0  8999999999999999999999999982       456


Q ss_pred             HHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938          214 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL  252 (348)
Q Consensus       214 ~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i  252 (348)
                      ++|+.+. ..+.|+|++||+.+ +...|||+++|.+|..
T Consensus       256 ~~l~~~~-~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          256 DFYNVLC-SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS  292 (330)
T ss_dssp             HHHHHHH-TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred             HHHHHHh-cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence            7777764 32458999999998 7778999999988863

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.89  E-value=1.2e-23  Score=224.95  Aligned_cols=175  Identities=15%  Similarity=0.217  Sum_probs=116.2

Q ss_pred             CCeEEEec-----eEEEecCCCCCCCCCCCceeeeeeeEEeC-------CCEEEEECCCCCcHHHHHHHHhCCCcCCCce
Q 018938           28 KPTVEINA-----LKFTYPGIDGHPPPGSTPLINDFTLTLNA-------GDRCLLVGSNGAGKTTILKIIGGKHMVEPEM   95 (348)
Q Consensus        28 ~~~l~v~~-----ls~~y~~~~~~~~~g~~~~l~~vsl~i~~-------Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~   95 (348)
                      .++|+++|     |++.|.        ++..+++|++|++++       |++++|+||||||||||||+| |++.+-.  
T Consensus       748 ~~~l~i~~~rHP~l~~~~~--------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a--  816 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFF--------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA--  816 (1022)
T ss_dssp             CCCEEEEEECCCC--------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH--
T ss_pred             CceEEEEeccccEEEEEec--------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh--
Confidence            35799999     999994        246799999999987       999999999999999999999 8754210  


Q ss_pred             EEEcCeeccccccccccCcccccchhhhhhhh-hcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCC
Q 018938           96 VKVLGRSAFHDTALTSSGDLSYLGGEWRREVA-FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKV  174 (348)
Q Consensus        96 i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~L  174 (348)
                                                   .++ |+++...   .++..+.++...+.. +           ......+++
T Consensus       817 -----------------------------qiG~~Vpq~~~---~l~v~d~I~~rig~~-d-----------~~~~~~stf  852 (1022)
T 2o8b_B          817 -----------------------------QMGCYVPAEVC---RLTPIDRVFTRLGAS-D-----------RIMSGESTF  852 (1022)
T ss_dssp             -----------------------------TTTCCEESSEE---EECCCSBEEEECC---------------------CHH
T ss_pred             -----------------------------heeEEeccCcC---CCCHHHHHHHHcCCH-H-----------HHhhchhhh
Confidence                                         111 2211110   000000000000100 0           011234678


Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHH-HHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR-ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~-~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~  253 (348)
                      |+++++ +++|++++.+|+++||||||+|+|+... ..++.+|+.+.++.|.++|++||+++++..+||++.++ +|++.
T Consensus       853 ~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~  930 (1022)
T 2o8b_B          853 FVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA  930 (1022)
T ss_dssp             HHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred             HHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence            888775 9999999999999999999999999874 55788998887655899999999999999999999887 58876


Q ss_pred             --eecChh
Q 018938          254 --LAMPMD  259 (348)
Q Consensus       254 --~~g~~~  259 (348)
                        ..++++
T Consensus       931 ~~~~~~~~  938 (1022)
T 2o8b_B          931 CMVENECE  938 (1022)
T ss_dssp             EC------
T ss_pred             EEEecCcc
Confidence              344443

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.88  E-value=2.5e-25  Score=212.98  Aligned_cols=177  Identities=21%  Similarity=0.215  Sum_probs=123.4

Q ss_pred             eeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhh--hhhhhhcCCCc
Q 018938           56 NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW--RREVAFAGFEV  133 (348)
Q Consensus        56 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  133 (348)
                      .++||++++|++++|+||||||||||+++|+|++.|+.|+|.+.|.+.+.....   .++    ..+  +..+++..+..
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~---eql----~~~~~r~~i~~v~q~~  220 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAAS---DQL----EIWAERTGCEIVVAEG  220 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHH---HHH----HHHHHHHTCEEECCSS
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchh---HHH----HHHHHhcCeEEEEecc
Confidence            568999999999999999999999999999999999999999998765421100   000    011  23455554443


Q ss_pred             c-ccccchHHHHH-hcc-CCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCc--EEEeeccCCCCCH
Q 018938          134 P-IQMDVSAEKMI-FGV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDV  206 (348)
Q Consensus       134 ~-~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~--lLlLDEPtsgLD~  206 (348)
                      . ..+..+..+.+ +.. ...+    ..+++.+|+.  .++.+.+||   +||++|||||+.+|+  +|+|| ||+|||+
T Consensus       221 ~~~~p~~tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~  292 (359)
T 2og2_A          221 DKAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM  292 (359)
T ss_dssp             SSCCHHHHHHHHHHHHHHTTCS----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGG
T ss_pred             cccChhhhHHHHHHHHHhCCCH----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCH
Confidence            3 33333333322 111 1111    1123344543  234577899   999999999999999  99999 9999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEec---------ChhhhhhhCCEEEEEcCCEEe
Q 018938          207 LARADLLRFLRKECEERGATIIYATH---------IFDGLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       207 ~~~~~l~~~l~~l~~~~g~tviivtH---------d~~~~~~~~d~v~~l~~G~i~  253 (348)
                      ..+.      +++.+..|.|+|++||         .+..+..++..|.++..|+.+
T Consensus       293 ~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~  342 (359)
T 2og2_A          293 LPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV  342 (359)
T ss_dssp             HHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred             HHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence            7653      3444456899999999         456677788899999999754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.88  E-value=2.9e-23  Score=208.97  Aligned_cols=151  Identities=10%  Similarity=0.011  Sum_probs=114.2

Q ss_pred             eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCce--EEEcCeeccccccccccCcccccchhhhhhhhhcCCCcccc
Q 018938           59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEM--VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ  136 (348)
Q Consensus        59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~--i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (348)
                      +..|++|++++|+||||||||||+++++|...+. |.  +.+.++...               ..+....          
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~---------------~~l~~~~----------  328 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESR---------------AQLLRNA----------  328 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCH---------------HHHHHHH----------
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCH---------------HHHHHHH----------
Confidence            5589999999999999999999999999987664 43  233221100               0000000          


Q ss_pred             ccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHH-----HH
Q 018938          137 MDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL-----AR  209 (348)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~-----~~  209 (348)
                               .. .+++.+   ++ ...++.  .+.++.+|||||+||+++|+++..+|++||+| ||++||+.     .+
T Consensus       329 ---------~~-~g~~~~---~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~  393 (525)
T 1tf7_A          329 ---------YS-WGMDFE---EM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR  393 (525)
T ss_dssp             ---------HT-TSCCHH---HH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred             ---------HH-cCCCHH---HH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence                     00 011211   11 123332  35567899999999999999999999999999 99999999     99


Q ss_pred             HHHHHHHHHHHHhcCcEEEEEecCh----------hhhhhhCCEEEEEcCCE
Q 018938          210 ADLLRFLRKECEERGATIIYATHIF----------DGLENWPSHIVYVAHGK  251 (348)
Q Consensus       210 ~~l~~~l~~l~~~~g~tviivtHd~----------~~~~~~~d~v~~l~~G~  251 (348)
                      ..+.++++.++ +.|.|||++||+.          ..+..+||+|++|++|+
T Consensus       394 ~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          394 QFVIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHHHHHHH-hCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            99999999875 5699999999999          88889999999999887

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.88  E-value=8.5e-24  Score=223.82  Aligned_cols=153  Identities=14%  Similarity=0.127  Sum_probs=110.4

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHH--------hCCCcCCCceEEEcCeeccccccccccCcccccchhh
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII--------GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW  122 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i--------~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~  122 (348)
                      ...+++|++|++++|++++|+||||||||||||+|        .|...|..+..                          
T Consensus       648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------------------------  701 (934)
T 3thx_A          648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------------------------  701 (934)
T ss_dssp             CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------------------------
T ss_pred             ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------------------------
Confidence            45789999999999999999999999999999999        44322211100                          


Q ss_pred             hhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH--ccCCcEEEeecc
Q 018938          123 RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL--LKPFKVLLLDEI  200 (348)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL--~~~P~lLlLDEP  200 (348)
                         +...  .                         +++..+++. +.....+|+|+++++.+|++|  +.+|+++|||||
T Consensus       702 ---~~~~--d-------------------------~i~~~ig~~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp  750 (934)
T 3thx_A          702 ---VSIV--D-------------------------CILARVGAG-DSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL  750 (934)
T ss_dssp             ---EECC--S-------------------------EEEEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEESC
T ss_pred             ---chHH--H-------------------------HHHHhcCch-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCC
Confidence               0000  0                         000011110 112346788888888888888  999999999999


Q ss_pred             CCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          201 TVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       201 tsgLD~~~~~~l-~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      |+|||+.....+ +.+++.+.++.|+++|++||+.+.+ .+||++..+.+|++...++.+++
T Consensus       751 ~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          751 GRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL  811 (934)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence            999999988888 6777777655699999999997655 68999999999999877766554

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.87  E-value=4.7e-22  Score=167.46  Aligned_cols=83  Identities=22%  Similarity=0.315  Sum_probs=74.2

Q ss_pred             CccCCCCCHHHHHHHHHH------HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhC
Q 018938          168 SWRMHKVSDGQRRRVQIC------MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  241 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lA------raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~  241 (348)
                      ++++.+||||||||++||      |||+.+|++|||||||+|||+.++..+.+.|.++.++ |.|||+||||+ .+..+|
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~-~~~~~~  129 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE-ELKDAA  129 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG-GGGGGC
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH-HHHHhC
Confidence            467899999999999876      8999999999999999999999999999999998644 89999999999 567899


Q ss_pred             CEEEEE--cCCEE
Q 018938          242 SHIVYV--AHGKL  252 (348)
Q Consensus       242 d~v~~l--~~G~i  252 (348)
                      |++++|  .+|..
T Consensus       130 d~ii~l~~~~g~s  142 (148)
T 1f2t_B          130 DHVIRISLENGSS  142 (148)
T ss_dssp             SEEEEEEEETTEE
T ss_pred             CEEEEEEcCCCeE
Confidence            999999  45643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.86  E-value=6.2e-22  Score=176.78  Aligned_cols=173  Identities=12%  Similarity=0.091  Sum_probs=116.4

Q ss_pred             CCceeeeeee-EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938           51 STPLINDFTL-TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA  129 (348)
Q Consensus        51 ~~~~l~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (348)
                      +.+.|+++.+ .+++|++++|+||||||||||++.|++...+..|.+.+.+......       .   +. .....+++.
T Consensus         8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~-------~---~~-~~~~~~~~~   76 (235)
T 2w0m_A            8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRD-------S---II-RQAKQFNWD   76 (235)
T ss_dssp             SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHH-------H---HH-HHHHHTTCC
T ss_pred             CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHH-------H---HH-HHHHHhcch
Confidence            3578999998 8999999999999999999999999987777777776654321000       0   00 000111111


Q ss_pred             CCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCc--EEEeeccCCCC--C
Q 018938          130 GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDL--D  205 (348)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~--lLlLDEPtsgL--D  205 (348)
                      .+..... .+      ........ .       ++  ........|.++.++...+.+...+|+  +||+||||+.+  |
T Consensus        77 ~~~~~~~-~~------~~~~~~~~-~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d  139 (235)
T 2w0m_A           77 FEEYIEK-KL------IIIDALMK-E-------KE--DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK  139 (235)
T ss_dssp             CGGGBTT-TE------EEEECCC--------------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC
T ss_pred             HHHHhhC-CE------EEEecccc-c-------cC--ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC
Confidence            1100000 00      00000000 0       00  011123459999999988888888999  99999999888  9


Q ss_pred             HHHHHHHHHHHHHHHHhcCcEEEEEecCh--------hhhhhhCCEEEEEcCCE
Q 018938          206 VLARADLLRFLRKECEERGATIIYATHIF--------DGLENWPSHIVYVAHGK  251 (348)
Q Consensus       206 ~~~~~~l~~~l~~l~~~~g~tviivtHd~--------~~~~~~~d~v~~l~~G~  251 (348)
                      +..+..+++.|++++++.|.|||++||+.        ..+..+||+|++|+...
T Consensus       140 ~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~  193 (235)
T 2w0m_A          140 PAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI  193 (235)
T ss_dssp             GGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence            99999999999999888899999999999        56889999999998653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.86  E-value=1e-21  Score=207.17  Aligned_cols=107  Identities=21%  Similarity=0.375  Sum_probs=95.4

Q ss_pred             HHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCCc--EEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 018938          158 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  232 (348)
Q Consensus       158 ~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P~--lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtH  232 (348)
                      +.+..+|+.   .++++.+|||||+|||+|||||+.+|+  +|||||||+|||+..+..++++|+++. +.|.|||+|||
T Consensus       446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~-~~G~TvivVtH  524 (916)
T 3pih_A          446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLR-DLGNTVIVVEH  524 (916)
T ss_dssp             HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTT-TTTCEEEEECC
T ss_pred             HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHH-hcCCEEEEEeC
Confidence            345556764   467899999999999999999999887  999999999999999999999999986 45999999999


Q ss_pred             ChhhhhhhCCEEEEE------cCCEEeeecChhHHHHhhh
Q 018938          233 IFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEASK  266 (348)
Q Consensus       233 d~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~  266 (348)
                      |++++.. ||+|++|      ++|++++.|+++++.....
T Consensus       525 d~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~  563 (916)
T 3pih_A          525 DEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNPD  563 (916)
T ss_dssp             CHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred             CHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCch
Confidence            9999865 9999999      9999999999999876543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.85  E-value=3.8e-22  Score=210.74  Aligned_cols=143  Identities=13%  Similarity=0.174  Sum_probs=98.6

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG  130 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      +..+++|+||++++|++++|+||||||||||||+|+++.....     .|.               +++.. ...++.. 
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-----~g~---------------~vpa~-~~~i~~~-  716 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-----IGS---------------YVPAE-EATIGIV-  716 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-----HTC---------------CBSSS-EEEEECC-
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-----cCc---------------cccch-hhhhhHH-
Confidence            4679999999999999999999999999999999976421100     000               00000 0000000 


Q ss_pred             CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHH
Q 018938          131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA  208 (348)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~  208 (348)
                       . .                        ++..+++.  .....+++|+||+|++.|+++ +.+|+++||||||+|||+..
T Consensus       717 -d-~------------------------i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~  769 (918)
T 3thx_B          717 -D-G------------------------IFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHD  769 (918)
T ss_dssp             -S-E------------------------EEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHH
T ss_pred             -H-H------------------------HHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHH
Confidence             0 0                        00011111  123457899999999999999 89999999999999999999


Q ss_pred             HHHHH-HHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938          209 RADLL-RFLRKECEERGATIIYATHIFDGLENWPSH  243 (348)
Q Consensus       209 ~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~d~  243 (348)
                      ...+. .+++.+.++.|.|||++|||++.+. +||+
T Consensus       770 ~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~~  804 (918)
T 3thx_B          770 GIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKN  804 (918)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHH
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHhh
Confidence            98887 7777776656999999999988764 5543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.85  E-value=1.6e-24  Score=204.24  Aligned_cols=174  Identities=9%  Similarity=0.053  Sum_probs=114.8

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeE-----------------------EeCCCEEEEECCCCCcHHHHHHHH
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLT-----------------------LNAGDRCLLVGSNGAGKTTILKII   85 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~-----------------------i~~Ge~~~liG~NGsGKSTLlk~i   85 (348)
                      ..|+++||++.|.           +++++++|.                       +++|+++||+||||||||||+++|
T Consensus        42 ~~i~~~~v~~~y~-----------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L  110 (312)
T 3aez_A           42 EQIDLLEVEEVYL-----------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVL  110 (312)
T ss_dssp             CCCCHHHHHHTHH-----------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHH
T ss_pred             CeEEeeehhhhhh-----------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHH
Confidence            3689999999993           577777765                       899999999999999999999999


Q ss_pred             hCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-h----ccC-CCCHHHHHHH
Q 018938           86 GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-F----GVA-GIDPQRRAEL  159 (348)
Q Consensus        86 ~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~-~~~~~~~~~~  159 (348)
                      +|++.|..|.-                 .+.++.           ++..+... +..+.. +    +.. ..+.+...++
T Consensus       111 ~gll~~~~G~~-----------------~v~~v~-----------qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~  161 (312)
T 3aez_A          111 QALLARWDHHP-----------------RVDLVT-----------TDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRF  161 (312)
T ss_dssp             HHHHHTSTTCC-----------------CEEEEE-----------GGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHH
T ss_pred             HhhccccCCCC-----------------eEEEEe-----------cCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            99988876530                 011111           11111111 111111 0    111 1234556677


Q ss_pred             HHHcCCCc-CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh-
Q 018938          160 IKVLDIDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL-  237 (348)
Q Consensus       160 l~~l~l~~-~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~-  237 (348)
                      ++.++-.. +.++.+|||||+||+++|+|++.+|+|||||||+..+|+..     ..+   .+..+ .+|+++|+.+.. 
T Consensus       162 L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l---~~~~D-~~I~V~a~~~~~~  232 (312)
T 3aez_A          162 VTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV---SDLFD-FSLYVDARIEDIE  232 (312)
T ss_dssp             HHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG---GGGCS-EEEEEEECHHHHH
T ss_pred             HHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH---HHhcC-cEEEEECCHHHHH
Confidence            77776322 35678999999999999999999999999999999998521     112   22233 457777887664 


Q ss_pred             hhhCCEEEEEcCCE
Q 018938          238 ENWPSHIVYVAHGK  251 (348)
Q Consensus       238 ~~~~d~v~~l~~G~  251 (348)
                      .++++|.+.+.+|+
T Consensus       233 ~R~i~R~~~~rd~~  246 (312)
T 3aez_A          233 QWYVSRFLAMRTTA  246 (312)
T ss_dssp             HHHHHHHHHHTTTG
T ss_pred             HHHHHHHHHHHhcc
Confidence            33455655555544

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.84  E-value=2.9e-21  Score=172.53  Aligned_cols=150  Identities=19%  Similarity=0.279  Sum_probs=91.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-------eEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-------MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV  133 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-------~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (348)
                      -|++|++++|+||||||||||+++|+|...+.++       .+++++.....                 ...+.+..+..
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----------------~~~i~~~~~~~   83 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----------------PERIREIAQNR   83 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----------------HHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----------------HHHHHHHHHHc
Confidence            6899999999999999999999999996555433       33333321000                 00111110000


Q ss_pred             cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHH-HHHHHHHHHcc-------CCcEEEeeccCCCCC
Q 018938          134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQR-RRVQICMGLLK-------PFKVLLLDEITVDLD  205 (348)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqr-QRv~lAraL~~-------~P~lLlLDEPtsgLD  205 (348)
                                      .....   .+.+.+.     ....++.+++ +.+..+++++.       +|++|++||||+++|
T Consensus        84 ----------------~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~  139 (231)
T 4a74_A           84 ----------------GLDPD---EVLKHIY-----VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR  139 (231)
T ss_dssp             ----------------TSCHH---HHHHTEE-----EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred             ----------------CCCHH---HHhhcEE-----EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence                            01111   1111111     1122333333 33455555544       999999999999999


Q ss_pred             HHH------------HHHHHHHHHHHHHhcCcEEEEEecChhh----hhhhCCEEEEEcCCE
Q 018938          206 VLA------------RADLLRFLRKECEERGATIIYATHIFDG----LENWPSHIVYVAHGK  251 (348)
Q Consensus       206 ~~~------------~~~l~~~l~~l~~~~g~tviivtHd~~~----~~~~~d~v~~l~~G~  251 (348)
                      +..            ...+++.|.+++++.|+|||++||+...    +..+||++++|++|+
T Consensus       140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence            842            2378888888887789999999995554    999999999998753

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.83  E-value=7.5e-21  Score=199.77  Aligned_cols=103  Identities=19%  Similarity=0.290  Sum_probs=93.8

Q ss_pred             HHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938          159 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  233 (348)
Q Consensus       159 ~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd  233 (348)
                      .+..+|+.   +++.+.+|||||+|||+||++|..+|  ++|||||||+|||+.....++++|+++. +.|.|||+||||
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHd  565 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHD  565 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCC
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Confidence            35667775   47889999999999999999999985  9999999999999999999999999985 579999999999


Q ss_pred             hhhhhhhCCEEEEE------cCCEEeeecChhHHHH
Q 018938          234 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE  263 (348)
Q Consensus       234 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~  263 (348)
                      ++++. .||+|++|      ++|++++.|+++++..
T Consensus       566 l~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~  600 (972)
T 2r6f_A          566 EDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN  600 (972)
T ss_dssp             HHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred             HHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence            99886 69999999      7999999999998865

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.83  E-value=2.4e-20  Score=183.17  Aligned_cols=75  Identities=16%  Similarity=0.252  Sum_probs=67.3

Q ss_pred             CCCCHHHHHHHHHHHHHc----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          172 HKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ..||||||||++||++|+    .+|++|||||||++||+..+..+.++|+++.+ .+.++|++||+...+ ..||+++.|
T Consensus       332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~~-~~~d~~~~~  409 (430)
T 1w1w_A          332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMF-EKSDALVGV  409 (430)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHH-TTCSEEEEE
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHHH-HhCCEEEEE
Confidence            459999999999999999    68999999999999999999999999998753 378999999997665 579999988


Q ss_pred             c
Q 018938          248 A  248 (348)
Q Consensus       248 ~  248 (348)
                      .
T Consensus       410 ~  410 (430)
T 1w1w_A          410 Y  410 (430)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.83  E-value=1.4e-23  Score=194.07  Aligned_cols=146  Identities=14%  Similarity=0.109  Sum_probs=80.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH-H
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-I  145 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  145 (348)
                      .++|+||||||||||+|+|+|+..|++|+|.++|.++....   .           ++.+++..+.......+++.+. .
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~---~-----------~~~i~~v~q~~~~~~~ltv~d~~~   69 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTV---E-----------IKAIGHVIEEGGVKMKLTVIDTPG   69 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCCC---S-----------CCEEEESCC----CCEEEEECCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcce---e-----------eeeeEEEeecCCCcCCceEEechh
Confidence            47999999999999999999999999999999987542111   0           1122333222222222221111 1


Q ss_pred             hcc--C-CCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh
Q 018938          146 FGV--A-GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  222 (348)
Q Consensus       146 ~~~--~-~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~  222 (348)
                      ++.  . ....+.+.+.+..  -..+..+.+|||||+||++||||++.   +++||||+++||+..    .++++.+. +
T Consensus        70 ~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~-~  139 (270)
T 3sop_A           70 FGDQINNENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS-K  139 (270)
T ss_dssp             --CCSBCTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH-T
T ss_pred             hhhhcccHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH-h
Confidence            111  1 1111222222220  00234567899999999999999886   999999999999976    44555554 3


Q ss_pred             cCcEEEEEecChhhh
Q 018938          223 RGATIIYATHIFDGL  237 (348)
Q Consensus       223 ~g~tviivtHd~~~~  237 (348)
                      . .+||+|.|..+.+
T Consensus       140 ~-~~vI~Vi~K~D~l  153 (270)
T 3sop_A          140 V-VNIIPVIAKADTM  153 (270)
T ss_dssp             T-SEEEEEETTGGGS
T ss_pred             c-CcEEEEEeccccC
Confidence            3 7999998886644

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.83  E-value=3.5e-22  Score=181.74  Aligned_cols=161  Identities=14%  Similarity=0.057  Sum_probs=89.6

Q ss_pred             CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938           50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA  129 (348)
Q Consensus        50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (348)
                      +++++|+|+||++++|+++||+||||||||||+++|+|++    |.+.++        .             .++.++++
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~--------~-------------~~~~i~~v   64 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE--------Q-------------RQRKVVIL   64 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC--------G-------------GGCSEEEE
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc--------c-------------cCCceEEE
Confidence            4578999999999999999999999999999999999964    332211        0             01111222


Q ss_pred             CCCccccccchHHHHH---hccCC------CCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeecc
Q 018938          130 GFEVPIQMDVSAEKMI---FGVAG------IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI  200 (348)
Q Consensus       130 ~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEP  200 (348)
                      ++. .++..++..+..   .+...      .+.+...+.++.+.-....++..||+||+||+++ ++++.+|+++|||||
T Consensus        65 ~~d-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~  142 (245)
T 2jeo_A           65 SQD-RFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI  142 (245)
T ss_dssp             EGG-GGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred             eCC-cCccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCc
Confidence            111 111122222211   11111      1223344555544223456788999999999988 688999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh-hhhhhhCCEEEEEcCCE
Q 018938          201 TVDLDVLARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGK  251 (348)
Q Consensus       201 tsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~  251 (348)
                      ....|..        +.++   .+.+|+++||+. .....+++++   ++|+
T Consensus       143 ~~~~~~~--------l~~~---~~~~i~v~th~~~~~~r~~~r~~---~~G~  180 (245)
T 2jeo_A          143 LVFYSQE--------IRDM---FHLRLFVDTDSDVRLSRRVLRDV---RRGR  180 (245)
T ss_dssp             TTTTSHH--------HHTT---CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred             cccccHH--------HHHh---cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence            9888863        2222   378999999974 4444555544   5564

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.83  E-value=4.1e-22  Score=183.23  Aligned_cols=131  Identities=15%  Similarity=0.127  Sum_probs=95.7

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-CceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      ++|+++|  +++|++++|+||||||||||+++|+|++.|+ +|+|.++|.++.            ++.+   ....+..+
T Consensus        15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~------------~~~~---~~~~~v~q   77 (261)
T 2eyu_A           15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE------------YVFK---HKKSIVNQ   77 (261)
T ss_dssp             THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC------------SCCC---CSSSEEEE
T ss_pred             HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce------------eecC---CcceeeeH
Confidence            5899999  8999999999999999999999999999887 899988875421            1100   00001000


Q ss_pred             CccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHH
Q 018938          132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD  211 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~  211 (348)
                                                   ..+++..    ..|      |++||+||..+|++||+||||   |+.+...
T Consensus        78 -----------------------------~~~gl~~----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~  115 (261)
T 2eyu_A           78 -----------------------------REVGEDT----KSF------ADALRAALREDPDVIFVGEMR---DLETVET  115 (261)
T ss_dssp             -----------------------------EEBTTTB----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHH
T ss_pred             -----------------------------HHhCCCH----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHH
Confidence                                         0122211    122      899999999999999999999   9988654


Q ss_pred             HHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          212 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       212 l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      +   ++. + +.|.+|+++||+.+ +..+|||+++|.
T Consensus       116 ~---l~~-~-~~g~~vl~t~H~~~-~~~~~dri~~l~  146 (261)
T 2eyu_A          116 A---LRA-A-ETGHLVFGTLHTNT-AIDTIHRIVDIF  146 (261)
T ss_dssp             H---HHH-H-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred             H---HHH-H-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence            4   333 3 35899999999987 566788876554

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.82  E-value=3.2e-20  Score=194.30  Aligned_cols=104  Identities=21%  Similarity=0.309  Sum_probs=94.2

Q ss_pred             HHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938          159 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  233 (348)
Q Consensus       159 ~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd  233 (348)
                      .+..+|+.   +++.+.+|||||+|||+||++|+.+|  ++|||||||++||+...+.++++|+++. +.|.|||+||||
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~-~~G~TVIvVeHd  440 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK-RGGNSLFVVEHD  440 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCC
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH-HcCCEEEEEcCC
Confidence            46667775   47789999999999999999999999  5999999999999999999999999985 569999999999


Q ss_pred             hhhhhhhCCEEEEE------cCCEEeeecChhHHHHh
Q 018938          234 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       234 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~  264 (348)
                      ++++. .||+|++|      ++|++++.|+++++...
T Consensus       441 l~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~  476 (842)
T 2vf7_A          441 LDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKHV  476 (842)
T ss_dssp             HHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred             HHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence            99775 69999999      79999999999988754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.79  E-value=2.6e-20  Score=193.87  Aligned_cols=133  Identities=22%  Similarity=0.191  Sum_probs=94.8

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-CCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA  129 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (348)
                      +..+++|+||+   |++++|+||||||||||||+|+|+.. +..|.+.      ..                ....+++.
T Consensus       565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa----------------~~~~i~~v  619 (765)
T 1ewq_A          565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PA----------------EEAHLPLF  619 (765)
T ss_dssp             SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SS----------------SEEEECCC
T ss_pred             CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------eh----------------hccceeeH
Confidence            35789999999   99999999999999999999999753 4555421      00                00112222


Q ss_pred             CCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH--ccCCcEEEeecc---CCCC
Q 018938          130 GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL--LKPFKVLLLDEI---TVDL  204 (348)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL--~~~P~lLlLDEP---tsgL  204 (348)
                      ++   ++..++..+                         .....+|+||+|++.+|+++  +.+|+++|||||   |++|
T Consensus       620 ~~---i~~~~~~~d-------------------------~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l  671 (765)
T 1ewq_A          620 DG---IYTRIGASD-------------------------DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL  671 (765)
T ss_dssp             SE---EEEECCC-------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred             HH---hhccCCHHH-------------------------HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence            11   111111000                         01125799999999999999  999999999999   9999


Q ss_pred             CHHHH-HHHHHHHHHHHHhcCcEEEEEecChhhhhhhC
Q 018938          205 DVLAR-ADLLRFLRKECEERGATIIYATHIFDGLENWP  241 (348)
Q Consensus       205 D~~~~-~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~  241 (348)
                      |+.+. ..+++.|.+    .|.|+|++||+.+++. +|
T Consensus       672 D~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~~-~~  704 (765)
T 1ewq_A          672 DGVAIATAVAEALHE----RRAYTLFATHYFELTA-LG  704 (765)
T ss_dssp             HHHHHHHHHHHHHHH----HTCEEEEECCCHHHHT-CC
T ss_pred             CHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHH-hh
Confidence            99876 467777764    4899999999998764 55

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.79  E-value=2.4e-20  Score=195.10  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=102.4

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-CCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA  129 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (348)
                      +..+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|      ..+               +.. ...+++.
T Consensus       594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~v---------------pa~-~~~i~~~  650 (800)
T 1wb9_A          594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYV---------------PAQ-KVEIGPI  650 (800)
T ss_dssp             SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCB---------------SSS-EEEECCC
T ss_pred             Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------ccc---------------chh-cccceeH
Confidence            35789999999 99999999999999999999999996321 111      000               000 0011111


Q ss_pred             CCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHH
Q 018938          130 GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR  209 (348)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~  209 (348)
                      .+   ++..+...+.                      .....+++|++|++ ++.+..++.+|+++||||||+|+|+...
T Consensus       651 ~~---i~~~~~~~d~----------------------l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~  704 (800)
T 1wb9_A          651 DR---IFTRVGAADD----------------------LASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDG  704 (800)
T ss_dssp             CE---EEEEEC---------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHH
T ss_pred             HH---HHhhCCHHHH----------------------HHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHH
Confidence            10   1111111000                      01123457777765 4444556899999999999999999877


Q ss_pred             HHH-HHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          210 ADL-LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       210 ~~l-~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ..+ +.+++.+.++.|.++|++|||.+++. +||++..+.+|++....
T Consensus       705 ~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~~~~~  751 (800)
T 1wb9_A          705 LSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHLDALE  751 (800)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEEEEEE
Confidence            775 77888876545899999999998764 89987777777765543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=5.3e-21  Score=168.52  Aligned_cols=178  Identities=16%  Similarity=0.194  Sum_probs=96.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----cCCCceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH-----MVEPEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~-----~~~~G~i~i~G~~~~  104 (348)
                      +|+++||+|.|+          .+++++  |++.+|.+++|+|+||||||||++.|+|..     .|++|.+.+.+....
T Consensus         3 ~l~~~~~~~~~~----------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~   70 (210)
T 1pui_A            3 NLNYQQTHFVMS----------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV   70 (210)
T ss_dssp             --------CEEE----------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE
T ss_pred             chhhhhhhheee----------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe
Confidence            589999999994          357777  899999999999999999999999999987     677776544221100


Q ss_pred             cc-cccc-ccCccc----c-cchhhhhhhhhcCCCccccccchHHHHHhcc-CCCCH--HHHHHHHHHcCCC---cCccC
Q 018938          105 HD-TALT-SSGDLS----Y-LGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AGIDP--QRRAELIKVLDID---LSWRM  171 (348)
Q Consensus       105 ~~-~~~~-~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~l~~l~l~---~~~~~  171 (348)
                      .+ ..+. ..+...    . ....++..+.+..+.......+.   +.... .....  ....+++...++.   ...++
T Consensus        71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~  147 (210)
T 1pui_A           71 ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLV---VLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA  147 (210)
T ss_dssp             ETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEE---EEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             cCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEE---EEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc
Confidence            00 0000 000000    0 00011111111000000000000   00000 01111  2233445555654   24567


Q ss_pred             CCCCHHHHHH-HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh
Q 018938          172 HKVSDGQRRR-VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  222 (348)
Q Consensus       172 ~~LSgGqrQR-v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~  222 (348)
                      ..+|+||+|| +.++++++.+|.++++|||||++|+.+..++++.|.++..+
T Consensus       148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            8899999999 89999999999999999999999999999999999987643

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.79  E-value=4.4e-22  Score=186.74  Aligned_cols=165  Identities=13%  Similarity=0.030  Sum_probs=75.4

Q ss_pred             eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC-CcCCCceEEEcCeecccccccccc
Q 018938           34 NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK-HMVEPEMVKVLGRSAFHDTALTSS  112 (348)
Q Consensus        34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl-~~~~~G~i~i~G~~~~~~~~~~~~  112 (348)
                      .||++.|+         ++.++++++|+|      +|+||||||||||+++|+|. ..|++| +.+.|..+.....   .
T Consensus         2 ~~l~~~~~---------~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~---~   62 (301)
T 2qnr_A            2 SNLPNQVH---------RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQ---I   62 (301)
T ss_dssp             -------------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------
T ss_pred             CCCcceEC---------CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcce---E
Confidence            47899994         578999999998      99999999999999999997 788888 7776654321100   0


Q ss_pred             CcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCC
Q 018938          113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPF  192 (348)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P  192 (348)
                      ..+.+..+..    +. .....................+. .....+.+.    .+.++.++|||||||+.+|||++   
T Consensus        63 ~~~~~~~q~~----~~-~~~ltv~Dt~g~~~~~~~~e~~~-~l~~~l~~~----~~~~~~~~sgg~rqrv~~ara~~---  129 (301)
T 2qnr_A           63 EASTVEIEER----GV-KLRLTVVDTPGYGDAINCRDCFK-TIISYIDEQ----FERYLHDESGLNRRHIIDNRVHC---  129 (301)
T ss_dssp             --CEEEEC-------C-CEEEEEEEEC-----------CT-THHHHHHHH----HHHHHHHHTSSCCTTCCCCCCCE---
T ss_pred             eeEEEEecCC----Cc-ccCcchhhhhhhhhhcCcHHHHH-HHHHHHHHH----HHHHHHHhCHHhhhhhhhhhhhh---
Confidence            0011110000    00 00000000000000000000000 011111111    23567889999999999999986   


Q ss_pred             cEEEeeccCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEecChh
Q 018938          193 KVLLLDEITVD-LDVLARADLLRFLRKECEERGATIIYATHIFD  235 (348)
Q Consensus       193 ~lLlLDEPtsg-LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~  235 (348)
                       +|++||||++ ||+...    ++++++..+.+.++|+++||+.
T Consensus       130 -ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          130 -CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             -EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             -eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence             9999999985 999863    5666665445889999999974

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.78  E-value=6.6e-19  Score=162.99  Aligned_cols=152  Identities=17%  Similarity=0.232  Sum_probs=97.6

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccch
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS  140 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (348)
                      .+++|++++|+||||||||||++.+++...  .|.+ +.|....      ..+.           +.|...+.... .+ 
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~------~~~~-----------v~~~~~e~~~~-~~-   83 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGEL------PTGP-----------VIYLPAEDPPT-AI-   83 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCC------CCCC-----------EEEEESSSCHH-HH-
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccC------CCcc-----------EEEEECCCCHH-HH-
Confidence            478999999999999999999999998542  4443 2232110      0011           11211111110 00 


Q ss_pred             HHHH-HhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCC--CCCHHHH---HHH
Q 018938          141 AEKM-IFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV--DLDVLAR---ADL  212 (348)
Q Consensus       141 ~~~~-~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPts--gLD~~~~---~~l  212 (348)
                      .... ..+ .........++++.+.+.  .++.+..||+||.|++   ++++.+|++||+||||+  ++|+...   ..+
T Consensus        84 ~~r~~~~g-~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~  159 (279)
T 1nlf_A           84 HHRLHALG-AHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV  159 (279)
T ss_dssp             HHHHHHHH-TTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred             HHHHHHHH-hhcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence            0011 011 122334455667777654  3567899999998765   68888999999999999  9998544   788


Q ss_pred             HHHHHHHHHhcCcEEEEEecChhhhh
Q 018938          213 LRFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       213 ~~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                      ++.|++++++.|+|||++||+.....
T Consensus       160 ~~~L~~l~~~~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          160 IGRMEAIAADTGCSIVFLHHASKGAA  185 (279)
T ss_dssp             HHHHHHHHHHHCCEEEEEEEC-----
T ss_pred             HHHHHHHHHHcCCEEEEEecCCCccc
Confidence            89999988777999999999987654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.78  E-value=3.8e-19  Score=157.67  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=103.4

Q ss_pred             Cceeeeeee-EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938           52 TPLINDFTL-TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG  130 (348)
Q Consensus        52 ~~~l~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (348)
                      .+.|+.+.. .+++|++++|+||||||||||++.|++  ....+.++++....           ..  ...+..      
T Consensus         6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~-----------~~--~~~~~~------   64 (220)
T 2cvh_A            6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGG-----------FS--PERLVQ------   64 (220)
T ss_dssp             CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCC-----------CC--HHHHHH------
T ss_pred             cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCC-----------CC--HHHHHH------
Confidence            567787776 799999999999999999999999998  33222333322110           00  000000      


Q ss_pred             CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHH--HHHHHHHHHHccC-CcEEEeeccCCCCCHH
Q 018938          131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQ--RRRVQICMGLLKP-FKVLLLDEITVDLDVL  207 (348)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGq--rQRv~lAraL~~~-P~lLlLDEPtsgLD~~  207 (348)
                                   .. ...+.+.+   ++++.+      .+.++|+++  +|+++.+++++.+ |+++|+||||+.+|+.
T Consensus        65 -------------~~-~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~  121 (220)
T 2cvh_A           65 -------------MA-ETRGLNPE---EALSRF------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE  121 (220)
T ss_dssp             -------------HH-HTTTCCHH---HHHHHE------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred             -------------HH-HhcCCChH---HHhhcE------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence                         00 00011111   122222      233445554  5688888999986 9999999999999973


Q ss_pred             H--------HHHHHHHHHHHHHhcCcEEEEEecChh-------------hhhhhCCEEEEEcCC
Q 018938          208 A--------RADLLRFLRKECEERGATIIYATHIFD-------------GLENWPSHIVYVAHG  250 (348)
Q Consensus       208 ~--------~~~l~~~l~~l~~~~g~tviivtHd~~-------------~~~~~~d~v~~l~~G  250 (348)
                      .        ...+++.|++++++.|+|||+++|...             .+..+||++++|+..
T Consensus       122 ~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          122 ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             GGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence            3        345666788888778999999999876             567899999999754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.77  E-value=8.8e-20  Score=174.49  Aligned_cols=166  Identities=14%  Similarity=0.141  Sum_probs=102.7

Q ss_pred             Cceeeee-eeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCC----ce-EEEcCeeccccccccccCcccccchhhh
Q 018938           52 TPLINDF-TLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEP----EM-VKVLGRSAFHDTALTSSGDLSYLGGEWR  123 (348)
Q Consensus        52 ~~~l~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~----G~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~  123 (348)
                      .+.|+.+ ++.|++|++++|+||||||||||++.++|..  +|+.    |. |++++...+                 .+
T Consensus       117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-----------------~~  179 (349)
T 1pzn_A          117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----------------RP  179 (349)
T ss_dssp             CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-----------------CH
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-----------------CH
Confidence            3567776 7899999999999999999999999999987  5555    56 677664321                 01


Q ss_pred             hhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHc-------cCCcEEE
Q 018938          124 REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL-------KPFKVLL  196 (348)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~-------~~P~lLl  196 (348)
                      ..+.+..+...                ....   .+++.+.+.  .  ..-|.+++|++.++++++       .+|++||
T Consensus       180 ~~i~~i~q~~~----------------~~~~---~v~~ni~~~--~--~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI  236 (349)
T 1pzn_A          180 ERIREIAQNRG----------------LDPD---EVLKHIYVA--R--AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLI  236 (349)
T ss_dssp             HHHHHHHHTTT----------------CCHH---HHGGGEEEE--E--CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred             HHHHHHHHHcC----------------CCHH---HHhhCEEEE--e--cCChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence            11222111110                1111   111111100  0  011567888888888888       7899999


Q ss_pred             eeccCCCCCHHH------------HHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          197 LDEITVDLDVLA------------RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       197 LDEPtsgLD~~~------------~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      +||||++||+..            ...++..|++++++.|+|||+++|.......+++.......|++++.+.
T Consensus       237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred             EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence            999999999862            4567777888877789999999999876655445556666777665543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.77  E-value=7e-21  Score=194.53  Aligned_cols=196  Identities=16%  Similarity=0.171  Sum_probs=107.0

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeee----------eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-CCceE
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDF----------TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-EPEMV   96 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~v----------sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-~~G~i   96 (348)
                      .+.+.++||++.|+.       ..+++|+.+          +|+++.   ++|+||||||||||+++|+|+..| ++|.|
T Consensus         8 ~~~i~~~~l~~~~~~-------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~v   77 (608)
T 3szr_A            8 PGSVAENNLCSQYEE-------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIV   77 (608)
T ss_dssp             ------------CHH-------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------C
T ss_pred             CchhhhhhhhHHHHH-------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeE
Confidence            446899999999952       123455544          366665   999999999999999999999888 79999


Q ss_pred             EEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCH
Q 018938           97 KVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSD  176 (348)
Q Consensus        97 ~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg  176 (348)
                      +++|.++.....    ..    ...++..++|.++...+....++.+.+           ......++...    ..+| 
T Consensus        78 t~~g~~i~~~~~----~~----~~~~~~~i~~v~Q~~~l~~~~tv~e~i-----------~~~~~~~~~~~----~~~s-  133 (608)
T 3szr_A           78 TRCPLVLKLKKL----VN----EDKWRGKVSYQDYEIEISDASEVEKEI-----------NKAQNAIAGEG----MGIS-  133 (608)
T ss_dssp             CCSCEEEEEEEC----SS----SSCCEEEESCC---CCCCCHHHHHTTH-----------HHHHHHHHCSS----SCCC-
T ss_pred             EEcCEEEEEecC----Cc----cccceeEEeeecccccCCCHHHHHHHH-----------HHHHHHhcCCc----cccc-
Confidence            999976421100    00    012334456655443333322222211           11111111100    0111 


Q ss_pred             HHHHHHHHHHHHccCCcEEEeecc------CCCCCHHHHHHHHHHHHHHHH-hcCcEEEEEecChhhhhhh---------
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEI------TVDLDVLARADLLRFLRKECE-ERGATIIYATHIFDGLENW---------  240 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEP------tsgLD~~~~~~l~~~l~~l~~-~~g~tviivtHd~~~~~~~---------  240 (348)
                        ++++.++.+....|+++|+|||      |+|||+..+..+.++++++.+ ..+.+++++|||++.+...         
T Consensus       134 --~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~  211 (608)
T 3szr_A          134 --HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD  211 (608)
T ss_dssp             --SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC
T ss_pred             --hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh
Confidence              1223334444568999999999      999999999999999999743 4578999999998744222         


Q ss_pred             ---CCEEEEEcCCEEeeecChh
Q 018938          241 ---PSHIVYVAHGKLQLAMPMD  259 (348)
Q Consensus       241 ---~d~v~~l~~G~i~~~g~~~  259 (348)
                         +..|+++.++.++..|+.+
T Consensus       212 ~~g~rtI~VlTK~Dlv~~g~~~  233 (608)
T 3szr_A          212 PEGDRTIGILTKPDLVDKGTED  233 (608)
T ss_dssp             SSCCSEEEEEECGGGSSSSSTT
T ss_pred             hcCCceEEEecchhhcCcccHH
Confidence               3567888887776665543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.76  E-value=2.4e-21  Score=169.70  Aligned_cols=156  Identities=16%  Similarity=0.077  Sum_probs=94.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM  144 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (348)
                      |++++|+||||||||||+++|+|+++ ++| |.++|.....   ..          .+++.+++..+...-...     +
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~---~~----------~~~~~ig~~~~~~~g~~~-----~   60 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE---VR----------QGGRRIGFDVVTLSGTRG-----P   60 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE---EE----------TTSSEEEEEEEETTSCEE-----E
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch---hH----------hhhceEEEEEEeccccee-----h
Confidence            78999999999999999999999988 889 8888764311   00          112233333222100000     0


Q ss_pred             HhccCCCCHHHHHHHHHHcCC--CcCccCCCCCHHHHHHH-HHHH---HHccCCcEEEeec--cCCCCCHHHHHHHHHHH
Q 018938          145 IFGVAGIDPQRRAELIKVLDI--DLSWRMHKVSDGQRRRV-QICM---GLLKPFKVLLLDE--ITVDLDVLARADLLRFL  216 (348)
Q Consensus       145 ~~~~~~~~~~~~~~~l~~l~l--~~~~~~~~LSgGqrQRv-~lAr---aL~~~P~lLlLDE--PtsgLD~~~~~~l~~~l  216 (348)
                      +... .....       ....  ...++...+|+|||+++ +|++   |++.+|++|||||  |++.+|+.....+.+++
T Consensus        61 l~~~-~~~~~-------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l  132 (189)
T 2i3b_A           61 LSRV-GLEPP-------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL  132 (189)
T ss_dssp             EEEC-CCCCC-------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred             hhcc-cccCC-------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence            0000 00000       0000  01234457999999988 4455   6899999999999  99999997666655555


Q ss_pred             HHHHHhcCcEEE----EEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          217 RKECEERGATII----YATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       217 ~~l~~~~g~tvi----ivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      .    . ..++|    .+||+.+  ..++|+|..+.+|+|+..
T Consensus       133 ~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~  168 (189)
T 2i3b_A          133 S----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV  168 (189)
T ss_dssp             H----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred             h----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence            3    3 33444    3459873  234555555678888764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.74  E-value=2.3e-19  Score=171.77  Aligned_cols=136  Identities=13%  Similarity=0.157  Sum_probs=89.0

Q ss_pred             Cceeeeeee-------EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-CceEEEcCeeccccccccccCcccccchhhh
Q 018938           52 TPLINDFTL-------TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-PEMVKVLGRSAFHDTALTSSGDLSYLGGEWR  123 (348)
Q Consensus        52 ~~~l~~vsl-------~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~  123 (348)
                      .+.|+++.+       .+.+|++++|+||||||||||+++|+|++.|+ .|.|...+.++ .           +.   ..
T Consensus       103 ~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e-----------~~---~~  167 (356)
T 3jvv_A          103 VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-E-----------FV---HE  167 (356)
T ss_dssp             CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-C-----------SC---CC
T ss_pred             CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-H-----------hh---hh
Confidence            445666665       67889999999999999999999999998887 45543322111 0           00   00


Q ss_pred             hhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCC
Q 018938          124 REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD  203 (348)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsg  203 (348)
                      ....+..+. .    .       .                       ...+|-.+    +||+||.++|++||+||||  
T Consensus       168 ~~~~~v~q~-~----~-------~-----------------------~~~~~~~~----~La~aL~~~PdvillDEp~--  206 (356)
T 3jvv_A          168 SKKCLVNQR-E----V-------H-----------------------RDTLGFSE----ALRSALREDPDIILVGEMR--  206 (356)
T ss_dssp             CSSSEEEEE-E----B-------T-----------------------TTBSCHHH----HHHHHTTSCCSEEEESCCC--
T ss_pred             ccccceeee-e----e-------c-----------------------cccCCHHH----HHHHHhhhCcCEEecCCCC--
Confidence            000010000 0    0       0                       00011111    9999999999999999999  


Q ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938          204 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG  250 (348)
Q Consensus       204 LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G  250 (348)
                       |++..    +.+.+++ +.|.+||+++|+.+.+ ..|||++.|..|
T Consensus       207 -d~e~~----~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          207 -DLETI----RLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFPA  246 (356)
T ss_dssp             -SHHHH----HHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred             -CHHHH----HHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence             66554    3434444 3599999999999988 679999888543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.74  E-value=4e-21  Score=170.14  Aligned_cols=143  Identities=17%  Similarity=0.138  Sum_probs=97.8

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchH
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA  141 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (348)
                      .++|+++||+||||||||||+++|+|++.|   .+.+-..+.+    ..   ..                     ..++.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~----~~---~~---------------------~~~~~   51 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY----YK---DL---------------------GHLPL   51 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC----BC---CC---------------------TTSCH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc----cc---Cc---------------------ccccH
Confidence            578999999999999999999999997654   2222111000    00   00                     00011


Q ss_pred             HH-HH--hcc-CCCCHHHHHHHHHHcCCC--cCccCCCCCHHH----HHHHHHHHHHccCCcEEEeeccCCC-------C
Q 018938          142 EK-MI--FGV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQ----RRRVQICMGLLKPFKVLLLDEITVD-------L  204 (348)
Q Consensus       142 ~~-~~--~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGq----rQRv~lAraL~~~P~lLlLDEPtsg-------L  204 (348)
                      .+ ..  +.. ...+.+...++++.+++.  ...++.++|+||    +||+++|++++.+|.++++||||++       |
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l  131 (211)
T 3asz_A           52 EERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV  131 (211)
T ss_dssp             HHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred             HHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence            11 00  010 112345556666766653  345678899996    4788999999999999999999999       9


Q ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEecChh
Q 018938          205 DVLARADLLRFLRKECEERGATIIYATHIFD  235 (348)
Q Consensus       205 D~~~~~~l~~~l~~l~~~~g~tviivtHd~~  235 (348)
                      |+.....+.+.+.+..++.|.|+++++|+..
T Consensus       132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          132 DADADERFIRRLKRDVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999999998865567999999999853

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.73  E-value=5e-18  Score=170.48  Aligned_cols=78  Identities=17%  Similarity=0.216  Sum_probs=71.7

Q ss_pred             cCCCC-CHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938          170 RMHKV-SDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  246 (348)
Q Consensus       170 ~~~~L-SgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~  246 (348)
                      ++.+| ||||+|||+||+||+.+|  ++|||||||+|||+.++..+.++|+++.+  |.|||+||||++.+. +||++++
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~  469 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYK  469 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEE
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEE
Confidence            35667 999999999999999999  99999999999999999999999999864  789999999999876 6999999


Q ss_pred             EcCC
Q 018938          247 VAHG  250 (348)
Q Consensus       247 l~~G  250 (348)
                      |+++
T Consensus       470 ~~~~  473 (517)
T 4ad8_A          470 VEKQ  473 (517)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9654

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.73  E-value=1.4e-17  Score=143.62  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=70.1

Q ss_pred             CccCCCCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938          168 SWRMHKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  243 (348)
Q Consensus       168 ~~~~~~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~  243 (348)
                      .+++..||||||||++||++|+.    +|+++||||||++||+.++..+.++|+++.+  +.++|++||+...+ .+||+
T Consensus        59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~-~~ad~  135 (173)
T 3kta_B           59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMM-ANADK  135 (173)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHH-TTCSE
T ss_pred             ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHH-HhCCE
Confidence            34578999999999999999974    4699999999999999999999999998753  56899999997755 68999


Q ss_pred             EEEE--cCCEE
Q 018938          244 IVYV--AHGKL  252 (348)
Q Consensus       244 v~~l--~~G~i  252 (348)
                      ++.+  .+|..
T Consensus       136 i~~v~~~~g~s  146 (173)
T 3kta_B          136 IIGVSMRDGVS  146 (173)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEecCCEE
Confidence            9855  46653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.71  E-value=9.5e-19  Score=164.15  Aligned_cols=155  Identities=20%  Similarity=0.160  Sum_probs=92.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhh--hhhhhhcCCCccccccchH
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW--RREVAFAGFEVPIQMDVSA  141 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  141 (348)
                      +|++++|+||||||||||+++|+|++.|+.|+|.+.|.+++.....   .++    ..+  +..++++++.....+..+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~---~ql----~~~~~~~~i~~v~q~~~~~p~~~v  173 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGG---TQL----SEWGKRLSIPVIQGPEGTDSAALA  173 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTT---HHH----HHHHHHHTCCEECCCTTCCHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHH---HHH----HHHHHhcCceEEEeCCCCCHHHHH
Confidence            6999999999999999999999999999999999999875432110   000    012  2234555443322222222


Q ss_pred             HHHH-hcc-CCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHH
Q 018938          142 EKMI-FGV-AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE  219 (348)
Q Consensus       142 ~~~~-~~~-~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l  219 (348)
                      .+.+ ... .+.+    ..+++..|.. +.....++...+||++||||++.+|+.++|     .||+.+...+++.++++
T Consensus       174 ~~~v~~~~~~~~d----~~llDt~G~~-~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~  243 (304)
T 1rj9_A          174 YDAVQAMKARGYD----LLFVDTAGRL-HTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKF  243 (304)
T ss_dssp             HHHHHHHHHHTCS----EEEECCCCCC-TTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHH
T ss_pred             HHHHHHHHhCCCC----EEEecCCCCC-CchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHH
Confidence            2221 100 0000    0011111211 111222345558999999999999994443     34444444566677777


Q ss_pred             HHhcCcEEEEEecChh
Q 018938          220 CEERGATIIYATHIFD  235 (348)
Q Consensus       220 ~~~~g~tviivtHd~~  235 (348)
                      .+..|.|+|++||+..
T Consensus       244 ~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          244 HEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             HHHHCCSEEEEECTTS
T ss_pred             HHHcCCcEEEEECCcc
Confidence            6666999999999854

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.69  E-value=2e-16  Score=142.23  Aligned_cols=149  Identities=13%  Similarity=0.251  Sum_probs=85.7

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC--CCcC-----CCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGG--KHMV-----EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV  133 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G--l~~~-----~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (348)
                      -|++|++++|+||||||||||++.|++  +..+     ..|.+++++...+....      +    ..+...+++     
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~------~----~~~~~~~g~-----   84 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER------L----LAVAERYGL-----   84 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH------H----HHHHHHTTC-----
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH------H----HHHHHHcCC-----
Confidence            588999999999999999999999999  4444     34556665542100000      0    000111111     


Q ss_pred             cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHH-HHHHHHHc--cCCcEEEeeccCCCCCHH---
Q 018938          134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRR-VQICMGLL--KPFKVLLLDEITVDLDVL---  207 (348)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQR-v~lAraL~--~~P~lLlLDEPtsgLD~~---  207 (348)
                                        ..+   ++++.+.     ....++..+... +.-+..++  .+|+++++|||++.+|+.   
T Consensus        85 ------------------~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~  138 (243)
T 1n0w_A           85 ------------------SGS---DVLDNVA-----YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSG  138 (243)
T ss_dssp             ------------------CHH---HHHHTEE-----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----
T ss_pred             ------------------CHH---HHhhCeE-----EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcC
Confidence                              110   0111110     112234443322 22222232  689999999999999985   


Q ss_pred             ----H-----HHHHHHHHHHHHHhcCcEEEEEecChhhhhh-------------------hCCEEEEEcCC
Q 018938          208 ----A-----RADLLRFLRKECEERGATIIYATHIFDGLEN-------------------WPSHIVYVAHG  250 (348)
Q Consensus       208 ----~-----~~~l~~~l~~l~~~~g~tviivtHd~~~~~~-------------------~~d~v~~l~~G  250 (348)
                          .     ...++..|.+++++.|+|||+++|.......                   +||++++|+.|
T Consensus       139 ~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          139 RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence                3     3456777777777789999999997765443                   89999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.67  E-value=1.2e-19  Score=174.50  Aligned_cols=170  Identities=11%  Similarity=0.081  Sum_probs=103.9

Q ss_pred             eeeeeeEEeC--CCEEEEECCCCCcHHHHHHHHhCCCcCCC----ceEEEcCeeccccccccccCcccccchhhhhhhhh
Q 018938           55 INDFTLTLNA--GDRCLLVGSNGAGKTTILKIIGGKHMVEP----EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF  128 (348)
Q Consensus        55 l~~vsl~i~~--Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~----G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (348)
                      .+.|+++|.+  |++++|+||||||||||+|+|+|++.|++    |++.+++...  +..      +.+....+ ..+++
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~--~~~------~~~~~~~~-~~I~~  228 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG--GDE------QAMQYSDY-PQMAL  228 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS--SCT------TSSCTTTH-HHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC--CCc------ccCChhHH-HHHHH
Confidence            4679999999  99999999999999999999999999888    6655432100  000      00000111 12222


Q ss_pred             cCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHc-cCCcEEEeec---cC---
Q 018938          129 AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL-KPFKVLLLDE---IT---  201 (348)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~-~~P~lLlLDE---Pt---  201 (348)
                      ..+.. .....+..+.+. +.....             ....+..+|+|++|+..+++++. .+|+++||||   |+   
T Consensus       229 ~~q~~-~~~~~t~~~nl~-~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~  293 (365)
T 1lw7_A          229 GHQRY-IDYAVRHSHKIA-FIDTDF-------------ITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDD  293 (365)
T ss_dssp             HHHHH-HHHHHHHCSSEE-EESSCH-------------HHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC----
T ss_pred             HHHHH-HHHHHhccCCEE-EEeCCc-------------hHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccC
Confidence            21110 000000000000 000000             01122345677788888888874 6999999999   65   


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          202 ---VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       202 ---sgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                         .++|+..+..+.+.|.++.++.+.+||+++|. ...+++|+++.++++
T Consensus       294 g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~  343 (365)
T 1lw7_A          294 GLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK  343 (365)
T ss_dssp             -------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH
T ss_pred             CCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Confidence               58999999999999998877668999999986 566677777666643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.66  E-value=2.2e-18  Score=168.19  Aligned_cols=166  Identities=20%  Similarity=0.179  Sum_probs=88.7

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|.++||+++|+         ++.+++++||+|      +|+|+||||||||+++|+|...+.+|.   +|.... ...
T Consensus        10 ~~l~~~~l~~~y~---------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~-~~~   70 (418)
T 2qag_C           10 GYVGFANLPNQVY---------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHR-IKK   70 (418)
T ss_dssp             -----CCCCCCTT---------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC------
T ss_pred             CcEEEEecceeEC---------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccC-Ccc
Confidence            4699999999994         467999999998      999999999999999999998765552   121110 000


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG  187 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAra  187 (348)
                           ...      ...+++..+.......++..+. .++...........+.+.+.       ..++.+++||++|||+
T Consensus        71 -----t~~------~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~-------~~~~~~l~qr~~IaRa  132 (418)
T 2qag_C           71 -----TVQ------VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID-------SKFEDYLNAESRVNRR  132 (418)
T ss_dssp             -----CCE------EEEEECC------CEEEEEEECC-----------CHHHHHHHH-------HHHHHHTTTSCC-CCC
T ss_pred             -----cee------eeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence                 000      0011111111111000100000 00000000000011111110       1456678899999999


Q ss_pred             HccCCc---EEEeeccC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938          188 LLKPFK---VLLLDEIT-VDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  237 (348)
Q Consensus       188 L~~~P~---lLlLDEPt-sgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~  237 (348)
                      ++.+|+   +|++|||| ++||+...    ++++.+. . +.+||+|.|..+.+
T Consensus       133 l~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~Dll  180 (418)
T 2qag_C          133 QMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKADTL  180 (418)
T ss_dssp             CCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEESTTSS
T ss_pred             hccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEcccCc
Confidence            999999   99999999 69999763    4455553 3 78888888876643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.63  E-value=5.2e-17  Score=145.37  Aligned_cols=148  Identities=11%  Similarity=0.106  Sum_probs=84.8

Q ss_pred             eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC--CCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcccc
Q 018938           59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV--EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ  136 (348)
Q Consensus        59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~--~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (348)
                      .-..++|++++|+||||||||||+++|+|+++|  ..|.|.+.+.....       +        .+..++|.+++...+
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-------~--------e~~gi~y~fq~~~~f   74 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-------G--------EVHGEHYFFVNHDEF   74 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-------T--------CCBTTTBEECCHHHH
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-------c--------cccCceEEECCHHHH
Confidence            456799999999999999999999999999875  45666665542210       0        011233332221111


Q ss_pred             ccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHH
Q 018938          137 MDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  216 (348)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l  216 (348)
                      ..++...              ++++.+.     ....+.|--+++   +..++..++++|||     ||+.++..+++.+
T Consensus        75 ~~~~~~~--------------~f~E~~~-----~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l  127 (219)
T 1s96_A           75 KEMISRD--------------AFLEHAE-----VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKM  127 (219)
T ss_dssp             HHHHHTT--------------CEEEEEE-----ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHC
T ss_pred             HHHHhcC--------------HHHHHHH-----HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHc
Confidence            1110000              0000000     000011111221   33445568999999     9999999999887


Q ss_pred             HHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938          217 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  262 (348)
Q Consensus       217 ~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  262 (348)
                      .     .+.||+++||+++++..   |+  +.+|    .++++++.
T Consensus       128 ~-----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~  159 (219)
T 1s96_A          128 P-----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIA  159 (219)
T ss_dssp             T-----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHH
T ss_pred             c-----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHH
Confidence            5     38999999999998876   32  6666    35666654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.60  E-value=6.3e-19  Score=153.37  Aligned_cols=164  Identities=13%  Similarity=0.089  Sum_probs=99.0

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM  144 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (348)
                      |++++|+||||||||||+++|++   +.+|.+.++|..+....      .           .++..+........+..+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~   61 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMV------V-----------GGYRPPWESDELLALTWKN   61 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTC------C-----------TTCCCGGGCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhh------c-----------cccccCccchhHHHHHHHH
Confidence            67999999999999999999997   66788888875432110      0           0111000000001111111


Q ss_pred             HhccCCCCHHHHHHHHHH-----cC-C-Cc--CccCCCC--CHHHHHHHHHHH------HHccCCcEEEeeccCCCCCHH
Q 018938          145 IFGVAGIDPQRRAELIKV-----LD-I-DL--SWRMHKV--SDGQRRRVQICM------GLLKPFKVLLLDEITVDLDVL  207 (348)
Q Consensus       145 ~~~~~~~~~~~~~~~l~~-----l~-l-~~--~~~~~~L--SgGqrQRv~lAr------aL~~~P~lLlLDEPtsgLD~~  207 (348)
                      +..       ........     ++ + ..  .+....+  |+||+|++.++.      +++.+|+...+|+   +||+.
T Consensus        62 l~~-------~~~~~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~  131 (189)
T 2bdt_A           62 ITD-------LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGER  131 (189)
T ss_dssp             HHH-------HHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGG
T ss_pred             HHH-------HHHHHHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHH
Confidence            000       00000000     00 0 00  0111234  889999988888      8999999888884   89998


Q ss_pred             HHHHHHHHHHHHHHhcCcEEEEEecC-hhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938          208 ARADLLRFLRKECEERGATIIYATHI-FDGLENWPSHIVYVAHGKLQLAMPMDKVK  262 (348)
Q Consensus       208 ~~~~l~~~l~~l~~~~g~tviivtHd-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  262 (348)
                      .+.. ++.+..+. +.+.++|.+||. ++.++++||+|+  ++|+++..|+++-+.
T Consensus       132 ~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~  183 (189)
T 2bdt_A          132 CLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE  183 (189)
T ss_dssp             GGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred             HHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence            8888 88888764 447899999999 999999999998  999999999876553

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.60  E-value=6.9e-17  Score=155.65  Aligned_cols=128  Identities=15%  Similarity=0.158  Sum_probs=86.9

Q ss_pred             eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-CceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938           55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV  133 (348)
Q Consensus        55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (348)
                      |++++  +++|++++|+||||||||||+++|+|++.|+ +|.|.+.+.++.            +   .++..++++.+. 
T Consensus       128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e------------~---~~~~~~~~v~Q~-  189 (372)
T 2ewv_A          128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE------------Y---VFKHKKSIVNQR-  189 (372)
T ss_dssp             HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC------------S---CCCCSSSEEEEE-
T ss_pred             HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh------------h---hhccCceEEEee-
Confidence            44444  7899999999999999999999999998887 899876553210            0   001111222110 


Q ss_pred             cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHH
Q 018938          134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL  213 (348)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~  213 (348)
                                                  .+++.    +..|      +.+|+++|..+|++|++|||+   |++...   
T Consensus       190 ----------------------------~~g~~----~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---  225 (372)
T 2ewv_A          190 ----------------------------EVGED----TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---  225 (372)
T ss_dssp             ----------------------------EBTTT----BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---
T ss_pred             ----------------------------ecCCC----HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---
Confidence                                        01111    2334      469999999999999999999   776543   


Q ss_pred             HHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          214 RFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       214 ~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      ..++..  ..|.+|+.++|+.+ +..+|||++.|
T Consensus       226 ~~l~~~--~~g~~vi~t~H~~~-~~~~~~rl~~l  256 (372)
T 2ewv_A          226 TALRAA--ETGHLVFGTLHTNT-AIDTIHRIVDI  256 (372)
T ss_dssp             HHHHHH--TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred             HHHHHH--hcCCEEEEEECcch-HHHHHHHHHHh
Confidence            344432  35889999999965 66677776433

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.59  E-value=1.8e-15  Score=145.68  Aligned_cols=77  Identities=31%  Similarity=0.371  Sum_probs=68.0

Q ss_pred             ccCCCCCHHHHHHH------HHHHHHccC-CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhC
Q 018938          169 WRMHKVSDGQRRRV------QICMGLLKP-FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP  241 (348)
Q Consensus       169 ~~~~~LSgGqrQRv------~lAraL~~~-P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~  241 (348)
                      .++..|||||+||+      ++|++|+.+ |++|||||||++||+..+..+.+.|.++.  .+.+||++||+.+ +..+|
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~~-~~~~~  352 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHRE-LEDVA  352 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCGG-GGGGC
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChHH-HHhhC
Confidence            34578999999988      567899999 99999999999999999999999998863  2468999999987 67899


Q ss_pred             CEEEEEc
Q 018938          242 SHIVYVA  248 (348)
Q Consensus       242 d~v~~l~  248 (348)
                      |++++|+
T Consensus       353 d~~~~l~  359 (371)
T 3auy_A          353 DVIINVK  359 (371)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            9999997

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.59  E-value=7.6e-15  Score=142.41  Aligned_cols=62  Identities=13%  Similarity=0.266  Sum_probs=49.1

Q ss_pred             cCCcEEEeeccCCCCCHHHH------------HHHHHHHHHHHHhcCcEEEEEecCh-------------------hhhh
Q 018938          190 KPFKVLLLDEITVDLDVLAR------------ADLLRFLRKECEERGATIIYATHIF-------------------DGLE  238 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD~~~~------------~~l~~~l~~l~~~~g~tviivtHd~-------------------~~~~  238 (348)
                      .+|+++++|||++.+|+...            ..+++.|++++++.|+|||+++|..                   ..+.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            57999999999999997543            6688889999888899999999982                   2346


Q ss_pred             hhCCEEEEEcCCE
Q 018938          239 NWPSHIVYVAHGK  251 (348)
Q Consensus       239 ~~~d~v~~l~~G~  251 (348)
                      .+||.+++|+.++
T Consensus       352 ~~ad~vl~L~~~~  364 (400)
T 3lda_A          352 YSSTTRLGFKKGK  364 (400)
T ss_dssp             HHCSEEEEEEECS
T ss_pred             HhcceEEEEEecC
Confidence            7789999988763

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.58  E-value=3.1e-17  Score=157.52  Aligned_cols=139  Identities=12%  Similarity=0.121  Sum_probs=98.7

Q ss_pred             eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938           55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP  134 (348)
Q Consensus        55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (348)
                      ++++||+|++|++++|+||||||||||+++|+|+++|+.|.|.++|..-..   .          ...+..+++...+  
T Consensus       165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~---~----------~~~~~~v~~v~~q--  229 (361)
T 2gza_A          165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF---L----------PDHPNHVHLFYPS--  229 (361)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC---C----------TTCSSEEEEECC---
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC---c----------cccCCEEEEeecC--
Confidence            399999999999999999999999999999999999999999998742100   0          0001111221100  


Q ss_pred             ccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH
Q 018938          135 IQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR  214 (348)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~  214 (348)
                                       . . .               ..++++..++..|+.++..+|+.+++|||..       ..+.+
T Consensus       230 -----------------~-~-~---------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~  268 (361)
T 2gza_A          230 -----------------E-A-K---------------EEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD  268 (361)
T ss_dssp             -------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH
T ss_pred             -----------------c-c-c---------------cccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH
Confidence                             0 0 0               0113455689999999999999999999986       24566


Q ss_pred             HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938          215 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK  251 (348)
Q Consensus       215 ~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~  251 (348)
                      +|..+. ....|++.++|..+ +...++|+..+..+.
T Consensus       269 ~l~~l~-~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          269 FINVAA-SGHGGSITSCHAGS-CELTFERLALMVLQN  303 (361)
T ss_dssp             HHHHHH-TTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred             HHHHHh-cCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence            676664 32457899999965 778899999888764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.56  E-value=3.9e-16  Score=151.97  Aligned_cols=171  Identities=16%  Similarity=0.153  Sum_probs=95.9

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDR--CLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      .|++++ ++.|+         +.+ |+++||+|++|++  ++|+||||||||||+|+|+|+.        ++|.++....
T Consensus        16 ~l~~~~-~~~y~---------~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~   76 (427)
T 2qag_B           16 TVPLAG-HVGFD---------SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQ   76 (427)
T ss_dssp             -CCCCC-CC-CC-----------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CC
T ss_pred             eEEEee-EEEEC---------Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCC
Confidence            467777 88894         355 9999999999999  9999999999999999999973        1222111000


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCC------------HHHHHHHHHHc-CCC------c
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGID------------PQRRAELIKVL-DID------L  167 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~l~~l-~l~------~  167 (348)
                      .    +.       .+..+++..+...+...+++.+. .++. ..+            .....+++... ++.      .
T Consensus        77 ~----~~-------~~~~i~~v~Q~~~l~~~ltv~D~~~~g~-~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~  144 (427)
T 2qag_B           77 P----GV-------QLQSNTYDLQESNVRLKLTIVSTVGFGD-QINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYH  144 (427)
T ss_dssp             S----SC-------EEEEEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSC
T ss_pred             c----cc-------eEeeEEEEeecCccccccchhhhhhhhh-ccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence            0    00       00111121111111101110000 0000 000            11223334433 321      1


Q ss_pred             CccC-----------CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh
Q 018938          168 SWRM-----------HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF  234 (348)
Q Consensus       168 ~~~~-----------~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~  234 (348)
                      +.++           +.|+-..   +.|+++|..++++|++|||+..|.+.....+.+.+++-.+..|.+|+++|.|-
T Consensus       145 d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          145 DSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             C--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             cccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence            1121           2456555   89999999999999999999999999999999999874456799999999763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.55  E-value=5.4e-16  Score=133.74  Aligned_cols=47  Identities=17%  Similarity=0.105  Sum_probs=40.3

Q ss_pred             ccCCcEEEeeccCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938          189 LKPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYATHIFDG  236 (348)
Q Consensus       189 ~~~P~lLlLDEPts-gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~  236 (348)
                      +.+|++||||||++ ++|+..+..+.+++.+.. +.|+++|++||....
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSLQ  145 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCSC
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCChh
Confidence            34999999999985 999999999999998865 358999999998654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.54  E-value=3.9e-16  Score=141.59  Aligned_cols=137  Identities=20%  Similarity=0.163  Sum_probs=82.6

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHh---CCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccch
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIG---GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS  140 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~---Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (348)
                      ++++++|+||||||||||+++|+   |+..|+.|.+.++|....        ..+       ...+....+........+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~--------~~~-------~~~i~~~~~~~~~~~~~~   90 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS--------TEV-------GEMAKQYIEKSLLVPDHV   90 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT--------CHH-------HHHHHHHHHTTCCCCHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC--------ChH-------HHHHHHHHHcCCCCCHHH
Confidence            47999999999999999999999   998888887766553210        000       001110000111111111


Q ss_pred             HHHHH-hc----------cCCC--CHHHHHHHHHH--cC------------CC--cCccCCCCCHHHHHHHHHHHHH-cc
Q 018938          141 AEKMI-FG----------VAGI--DPQRRAELIKV--LD------------ID--LSWRMHKVSDGQRRRVQICMGL-LK  190 (348)
Q Consensus       141 ~~~~~-~~----------~~~~--~~~~~~~~l~~--l~------------l~--~~~~~~~LSgGqrQRv~lAraL-~~  190 (348)
                      ..+.+ ..          ..+.  .......+...  ++            +.  .++++.+|||    |+   +|| +.
T Consensus        91 v~~~l~~~l~~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~  163 (246)
T 2bbw_A           91 ITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN  163 (246)
T ss_dssp             HHHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred             HHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence            11111 00          1111  12222222211  11            11  1456788999    66   777 99


Q ss_pred             CCcEEEee----ccCCCCCHHHHHHHHHHHHHHHHh
Q 018938          191 PFKVLLLD----EITVDLDVLARADLLRFLRKECEE  222 (348)
Q Consensus       191 ~P~lLlLD----EPtsgLD~~~~~~l~~~l~~l~~~  222 (348)
                      +|++++||    |||++||+.++..+.+.|+++.++
T Consensus       164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~  199 (246)
T 2bbw_A          164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV  199 (246)
T ss_dssp             CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred             CCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence            99999999    999999999999999999988654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.51  E-value=2.3e-15  Score=130.63  Aligned_cols=134  Identities=16%  Similarity=0.028  Sum_probs=78.0

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccch
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS  140 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (348)
                      .+++|++++|+||||||||||+++|+|.  ++.|.|.++|.++.....  ......           +.++...  ...+
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~-----------~~~~~~~--~~~~   67 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDP-----------WLPQSHQ--QNRM   67 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCT-----------TSSSHHH--HHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccC-----------Cccchhh--hhHH
Confidence            4789999999999999999999999997  788999998865422110  000111           1111100  0111


Q ss_pred             HHHHH-h-----ccCCCCHHHHHHHHHHcCCC----cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHH
Q 018938          141 AEKMI-F-----GVAGIDPQRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA  210 (348)
Q Consensus       141 ~~~~~-~-----~~~~~~~~~~~~~l~~l~l~----~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~  210 (348)
                      ..+.+ .     ...+.. ..++.++..+++.    ....+..+|+|++|++++||++..+|+++        +|+....
T Consensus        68 v~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~  138 (191)
T 1zp6_A           68 IMQIAADVAGRYAKEGYF-VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVA  138 (191)
T ss_dssp             HHHHHHHHHHHHHHTSCE-EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCe-EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHH
Confidence            11111 0     000000 0000000000110    02345679999999999999999999876        6888888


Q ss_pred             HHHHHHHHHH
Q 018938          211 DLLRFLRKEC  220 (348)
Q Consensus       211 ~l~~~l~~l~  220 (348)
                      .+++.+..+.
T Consensus       139 ~~~~~~~~l~  148 (191)
T 1zp6_A          139 DLHSQFADLG  148 (191)
T ss_dssp             HHHHHTTCCG
T ss_pred             HHHHHHhccC
Confidence            8888776653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.50  E-value=2.1e-16  Score=150.36  Aligned_cols=66  Identities=20%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF  104 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~  104 (348)
                      +|+++++++.|+         ...+|+++||++.+|++++|+||||||||||+++|+|++.|+.|+|.+.|.++.
T Consensus        29 ~ie~~~~~~~~~---------~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~   94 (337)
T 2qm8_A           29 LAESRRADHRAA---------VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS   94 (337)
T ss_dssp             HHTCSSHHHHHH---------HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             HHeeCCcccccC---------hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence            588999999994         357999999999999999999999999999999999999999999999987653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.50  E-value=2.5e-15  Score=146.49  Aligned_cols=162  Identities=17%  Similarity=0.158  Sum_probs=91.6

Q ss_pred             eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938           55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP  134 (348)
Q Consensus        55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (348)
                      -++++|+++.|++++|+|+||||||||+++|+|..+      .+.+.+.....     ..+.++...-...+.+  .+.+
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~-----p~~G~V~~~~~~~~~l--~Dtp  213 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLS-----PNLGVVEVSEEERFTL--ADIP  213 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSC-----CEEEEEECSSSCEEEE--EECC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceec-----ceeeEEEecCcceEEE--Eecc
Confidence            479999999999999999999999999999999732      12222110000     0000000000000000  0000


Q ss_pred             ccccchHHHHHhccCCCCHHH------HHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHH
Q 018938          135 IQMDVSAEKMIFGVAGIDPQR------RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA  208 (348)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~------~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~  208 (348)
                      -....     ...........      ...++..+++. ..++.+||+|++|++.+|++|+..|.+|++    |.+|+..
T Consensus       214 Gli~~-----a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~  283 (416)
T 1udx_A          214 GIIEG-----ASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE  283 (416)
T ss_dssp             CCCCC-----GGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred             ccccc-----hhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence            00000     00000011110      11122233443 456778999999999999999999999999    9999987


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEEe-cChhhhhhh
Q 018938          209 RADLLRFLRKECEERGATIIYAT-HIFDGLENW  240 (348)
Q Consensus       209 ~~~l~~~l~~l~~~~g~tviivt-Hd~~~~~~~  240 (348)
                      . ..++.+.+..++.+.+++++| |.-+-+..+
T Consensus       284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL  315 (416)
T 1udx_A          284 E-EAVKALADALAREGLAVLPVSALTGAGLPAL  315 (416)
T ss_dssp             H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence            7 455555555555577776665 444434433

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.49  E-value=2.4e-14  Score=120.29  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=35.8

Q ss_pred             HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcE-EEEEecC
Q 018938          188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT-IIYATHI  233 (348)
Q Consensus       188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~t-viivtHd  233 (348)
                      ++.+|++||+|||++ ++...+..+++++.++.+ .|++ +|++||.
T Consensus        80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~  124 (149)
T 2kjq_A           80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred             HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence            467899999999998 666668889999988764 4777 8888884

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.48  E-value=1.8e-16  Score=134.78  Aligned_cols=63  Identities=17%  Similarity=0.017  Sum_probs=55.2

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA  103 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~  103 (348)
                      ++.+++++.|+         ++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|..+
T Consensus         8 ~~~~~~~~~~g---------~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i   70 (158)
T 1htw_A            8 IPDEFSMLRFG---------KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL   70 (158)
T ss_dssp             ECSHHHHHHHH---------HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred             cCCHHHHHHHH---------HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence            44557788884         467999999999999999999999999999999999998 9999998888644

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.47  E-value=8.4e-14  Score=131.74  Aligned_cols=170  Identities=17%  Similarity=0.101  Sum_probs=99.1

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhh--hcCCCcccccc
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA--FAGFEVPIQMD  138 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  138 (348)
                      ..++|++++|+||||||||||+++|+|++.|+.|+|.+.|.+++......   +    ...+.+.++  +..+.....+.
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~e---q----l~~~~~~~gv~~v~q~~~~~p~  197 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIE---Q----LEEHAKRIGVKVIKHSYGADPA  197 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHH---H----HHHHHHHTTCEEECCCTTCCHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHH---H----HHHHHHHcCceEEeccccCCHH
Confidence            34789999999999999999999999999999999999988764321110   0    011223333  33232222222


Q ss_pred             chHHHHH-hccC-CCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHH
Q 018938          139 VSAEKMI-FGVA-GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL  216 (348)
Q Consensus       139 ~~~~~~~-~~~~-~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l  216 (348)
                      .++.+.+ +... +.+    .-+++..|..     +.-..=+.+.-.+++++..++.+++||.+|.       ..+.+.+
T Consensus       198 ~~v~e~l~~~~~~~~d----~vliDtaG~~-----~~~~~l~~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~  261 (328)
T 3e70_C          198 AVAYDAIQHAKARGID----VVLIDTAGRS-----ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-------NAIVEQA  261 (328)
T ss_dssp             HHHHHHHHHHHHHTCS----EEEEEECCSC-----CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHH
T ss_pred             HHHHHHHHHHHhccch----hhHHhhccch-----hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHH
Confidence            2222221 1100 000    0001111111     0011123333458999999999999996554       2555666


Q ss_pred             HHHHHhcCcEEEEEecChh---------hhhhhCCEEEEEcCCEEe
Q 018938          217 RKECEERGATIIYATHIFD---------GLENWPSHIVYVAHGKLQ  253 (348)
Q Consensus       217 ~~l~~~~g~tviivtHd~~---------~~~~~~d~v~~l~~G~i~  253 (348)
                      +.+.+..+.|+|++||.-.         .+....-.|.++..|+-+
T Consensus       262 ~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v  307 (328)
T 3e70_C          262 RQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY  307 (328)
T ss_dssp             HHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred             HHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence            6776667999999999542         233445677888888754

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.45  E-value=2.7e-16  Score=153.41  Aligned_cols=139  Identities=11%  Similarity=0.016  Sum_probs=81.5

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc-ccc---cCcccccchhhhhhhhh
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA-LTS---SGDLSYLGGEWRREVAF  128 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~  128 (348)
                      .+|+++ + ..+|++++|+|||||||||||++|+|++.|+.|.|.+.|.++..... ...   ...+.+......+  .+
T Consensus       157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr--~~  232 (418)
T 1p9r_A          157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR--AI  232 (418)
T ss_dssp             HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH--HH
T ss_pred             HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHH--HH
Confidence            356666 4 37899999999999999999999999999999999988765421100 000   0001110000000  01


Q ss_pred             cCCCccc--ccc----chHHHHH-hc---------cCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCC
Q 018938          129 AGFEVPI--QMD----VSAEKMI-FG---------VAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPF  192 (348)
Q Consensus       129 ~~~~~~~--~~~----~~~~~~~-~~---------~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P  192 (348)
                      ..+.+..  ...    .+....+ +.         ....+.......+..+++.....+..|||||+||  |||+|+.+|
T Consensus       233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~QR--LaraL~~~p  310 (418)
T 1p9r_A          233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQR--LVRTLCPDC  310 (418)
T ss_dssp             GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEE--EEEEECTTT
T ss_pred             hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--hhhhhcCCC
Confidence            1121111  111    2333221 11         1111222333456667776545678899999999  999999999


Q ss_pred             cEEEe
Q 018938          193 KVLLL  197 (348)
Q Consensus       193 ~lLlL  197 (348)
                      +++.-
T Consensus       311 ~~~~~  315 (418)
T 1p9r_A          311 KEPYE  315 (418)
T ss_dssp             CEEEE
T ss_pred             CccCC
Confidence            98763

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.45  E-value=1.6e-15  Score=143.01  Aligned_cols=163  Identities=19%  Similarity=0.046  Sum_probs=91.3

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCC--------cCCCceEEEcCeecccccc-cc--ccCcccc-cchhhhhhhhhc---C
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKH--------MVEPEMVKVLGRSAFHDTA-LT--SSGDLSY-LGGEWRREVAFA---G  130 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~--------~~~~G~i~i~G~~~~~~~~-~~--~~~~~~~-~~~~~~~~~~~~---~  130 (348)
                      ++++|+|+||||||||+|+|+|+.        .|+.|+|.++|..+..... ..  ..+.+.. ....+...+.+.   .
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            589999999999999999999986        7899999999986532110 00  0000000 001122222221   0


Q ss_pred             C------Cccccccch---HHHHHhccCCCCHHHH-----HHHHHHcCCC-cCccCCCCCHHHHHHHHHHHHHccCCcEE
Q 018938          131 F------EVPIQMDVS---AEKMIFGVAGIDPQRR-----AELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVL  195 (348)
Q Consensus       131 ~------~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~l~~l~l~-~~~~~~~LSgGqrQRv~lAraL~~~P~lL  195 (348)
                      +      .........   ...+...+.. .....     ..++..+++. ......+||+||+||+..+++++.+|+++
T Consensus        85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~-~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~  163 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMADPGPIIQTFFS-HEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA  163 (318)
T ss_dssp             HHTSCCCSEEEEEEETTCCHHHHHHHHHH-SHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC
T ss_pred             hcCCCCCCEEEEeCCCCCCHHHHHHHHhc-CccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC
Confidence            1      100000000   0010000000 00000     0011112221 11223379999999999999999999987


Q ss_pred             EeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938          196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS  242 (348)
Q Consensus       196 lLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d  242 (348)
                        |||         ..+.+.|+++.  .+.+|+++||+...+..+.|
T Consensus       164 --de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l~~  197 (318)
T 1nij_A          164 --GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLLFN  197 (318)
T ss_dssp             --SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGGSC
T ss_pred             --CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHHhC
Confidence              999         67888888864  48899999997655555443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.43  E-value=9.9e-16  Score=131.80  Aligned_cols=137  Identities=15%  Similarity=0.103  Sum_probs=79.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeeccccccccccCcccccchhhh-hhhh----hcCCCccccc
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAFHDTALTSSGDLSYLGGEWR-REVA----FAGFEVPIQM  137 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~  137 (348)
                      ++++|+|+||||||||+++|+|++.|+   .|.|.++|.++.....   .+     ...++ +.++    +..++...+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~---~~-----~d~~r~~~ig~~~~~~~~~~~~~i   74 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDK---EG-----KDSWKIYNSGADVVIASPVKLAFI   74 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--------------------CHHHHHHHHTCEEEEECSSEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCc---cc-----hhHHHHHhcCCceEEECCCcEEEE
Confidence            589999999999999999999999888   7999998875322100   00     01233 2344    3333222110


Q ss_pred             cchHHHHHhccCCCCHH---HHHHHHHH-cCCCcCcc-CCCCCHHHHHHHHHHHHHccCCcEE-------EeeccCC---
Q 018938          138 DVSAEKMIFGVAGIDPQ---RRAELIKV-LDIDLSWR-MHKVSDGQRRRVQICMGLLKPFKVL-------LLDEITV---  202 (348)
Q Consensus       138 ~~~~~~~~~~~~~~~~~---~~~~~l~~-l~l~~~~~-~~~LSgGqrQRv~lAraL~~~P~lL-------lLDEPts---  202 (348)
                      .          . .+.+   ...++++. +. ..+.. ...|||||+||++||||++.+|++.       +=|.|..   
T Consensus        75 ~----------~-~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~  142 (171)
T 2f1r_A           75 R----------R-VSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK  142 (171)
T ss_dssp             E----------E-CCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred             e----------c-CChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence            0          0 0111   23445544 43 22222 2349999999999999999999873       2345432   


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q 018938          203 DLDVLARADLLRFLRKECEE  222 (348)
Q Consensus       203 gLD~~~~~~l~~~l~~l~~~  222 (348)
                      -+|......+.+++.+..++
T Consensus       143 ~f~~~~~~~~a~~i~~~~~~  162 (171)
T 2f1r_A          143 WFRRDEVERIAEFILSLLRE  162 (171)
T ss_dssp             EECTTCHHHHHHHHHHHHTC
T ss_pred             ccCcccHHHHHHHHHHHHhc
Confidence            23444556788888776655

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.42  E-value=2.3e-17  Score=164.99  Aligned_cols=177  Identities=13%  Similarity=0.071  Sum_probs=102.2

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc-----cccCcccccchhhhhh--
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL-----TSSGDLSYLGGEWRRE--  125 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~-----~~~~~~~~~~~~~~~~--  125 (348)
                      .++++++|.+++|++++|+||||||||||+++|+|+++|+.|.|++.|..-......     .....+......+...  
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~  327 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR  327 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence            467889999999999999999999999999999999999999999988642211000     0000000000000000  


Q ss_pred             -hhhcCCCccccccchHHHH------Hh-ccCCC---CHHHHHHHHHHcC-----CCc------C---ccCCCCCHHHHH
Q 018938          126 -VAFAGFEVPIQMDVSAEKM------IF-GVAGI---DPQRRAELIKVLD-----IDL------S---WRMHKVSDGQRR  180 (348)
Q Consensus       126 -~~~~~~~~~~~~~~~~~~~------~~-~~~~~---~~~~~~~~l~~l~-----l~~------~---~~~~~LSgGqrQ  180 (348)
                       ......+......+...+.      .. +....   ......++++++.     +..      +   .....+|+||+|
T Consensus       328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~  407 (511)
T 2oap_1          328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL  407 (511)
T ss_dssp             TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred             HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence             0000001011111111111      11 11000   0011223333332     210      1   123458999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEE--EecChhhhhhhCC
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY--ATHIFDGLENWPS  242 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvii--vtHd~~~~~~~~d  242 (348)
                      |+++|.          + | |+|||+.....+++.|.++.. .+.|+++  +||+++++...|+
T Consensus       408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~ei~~~~g  458 (511)
T 2oap_1          408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLEKMADFLG  458 (511)
T ss_dssp             EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHHHHHHHHT
T ss_pred             EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHHHHHHHcC
Confidence            987651          1 7 999999888878777777643 4789885  9999999998874

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.40  E-value=7.3e-14  Score=137.86  Aligned_cols=165  Identities=18%  Similarity=0.140  Sum_probs=93.3

Q ss_pred             eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938           55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP  134 (348)
Q Consensus        55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (348)
                      -+++||++++|++++|+|+||||||||+++|+|++.++.|+|.+.|.+.+.....   .++..  ...+..++++.+...
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~---eQL~~--~~~r~~I~vV~Q~~~  357 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAV---EQLQV--WGQRNNIPVIAQHTG  357 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHH---HHHHH--HHHHHTCCEECCSTT
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhH---HHHHH--HHHhcCceEEecccC
Confidence            4689999999999999999999999999999999999999999987654321000   00000  001334555544332


Q ss_pred             ccccchHHHHH-hcc-CCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHc-cCC-cEEEeeccCCCCCHHHHH
Q 018938          135 IQMDVSAEKMI-FGV-AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL-KPF-KVLLLDEITVDLDVLARA  210 (348)
Q Consensus       135 ~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~-~~P-~lLlLDEPtsgLD~~~~~  210 (348)
                      .....+..+.+ +.. .+.+    .-+++..|....  -..|-.-.+|++.+++++. ..| ++||...||+|.|..   
T Consensus       358 ~~p~~tV~e~l~~a~~~~~D----vVLIDTaGrl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---  428 (503)
T 2yhs_A          358 ADSASVIFDAIQAAKARNID----VLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---  428 (503)
T ss_dssp             CCHHHHHHHHHHHHHHTTCS----EEEECCCCSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH---
T ss_pred             cCHHHHHHHHHHHHHhcCCC----EEEEeCCCccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH---
Confidence            22222222221 110 0000    000011111100  0011123357888998774 457 355555588886553   


Q ss_pred             HHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938          211 DLLRFLRKECEERGATIIYATHIFDGL  237 (348)
Q Consensus       211 ~l~~~l~~l~~~~g~tviivtHd~~~~  237 (348)
                         +.++.+.+..+.|.|++|| ++..
T Consensus       429 ---~~ak~f~~~~~itgvIlTK-LD~t  451 (503)
T 2yhs_A          429 ---SQAKLFHEAVGLTGITLTK-LDGT  451 (503)
T ss_dssp             ---HHHHHHHHHTCCSEEEEEC-GGGC
T ss_pred             ---HHHHHHHhhcCCCEEEEEc-CCCc
Confidence               3345555556899999999 4543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.38  E-value=6.7e-13  Score=125.96  Aligned_cols=144  Identities=19%  Similarity=0.173  Sum_probs=74.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhC-CCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH
Q 018938           67 RCLLVGSNGAGKTTILKIIGG-KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI  145 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G-l~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (348)
                      .+.|+||||+|||||+++|+| ++.|+.|.+.++|........             ....+.+..+..........    
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~----  100 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-------------RKLELNVVSSPYHLEITPSD----  100 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------------------CCEECSSEEEECCC-----
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-------------ccceeeeecccceEEecHhh----
Confidence            389999999999999999999 788899999888764321100             01112222111111000000    


Q ss_pred             hccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhc
Q 018938          146 FGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER  223 (348)
Q Consensus       146 ~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~  223 (348)
                        ..........+.++.+...  ..... .|||           +..+|+++|+|||++ ||+..+..+++.|.+..  .
T Consensus       101 --~~~~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~  163 (354)
T 1sxj_E          101 --MGNNDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--K  163 (354)
T ss_dssp             -----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--T
T ss_pred             --cCCcchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--C
Confidence              0001111233333333211  11111 5676           788999999999999 99999999999998763  3


Q ss_pred             CcEEEEEecChhhhh-hhCCEE
Q 018938          224 GATIIYATHIFDGLE-NWPSHI  244 (348)
Q Consensus       224 g~tviivtHd~~~~~-~~~d~v  244 (348)
                      +.++|++||+.+.+. .+.+|+
T Consensus       164 ~~~~Il~t~~~~~l~~~l~sR~  185 (354)
T 1sxj_E          164 NIRLIMVCDSMSPIIAPIKSQC  185 (354)
T ss_dssp             TEEEEEEESCSCSSCHHHHTTS
T ss_pred             CCEEEEEeCCHHHHHHHHHhhc
Confidence            789999999976542 333443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.38  E-value=1.9e-12  Score=116.11  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             cCCcEEEeeccCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEecChhh--------hhhhCCEEEEEcC
Q 018938          190 KPFKVLLLDEITVDL--DVLARADLLRFLRKECEERGATIIYATHIFDG--------LENWPSHIVYVAH  249 (348)
Q Consensus       190 ~~P~lLlLDEPtsgL--D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--------~~~~~d~v~~l~~  249 (348)
                      .+|+++++|+|++.+  |+.....++..|.+++++.|+|||+++|....        ++++||.|+.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            589999999999988  66555666666777777789999999998876        4678999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.37  E-value=1.4e-15  Score=133.70  Aligned_cols=56  Identities=7%  Similarity=0.014  Sum_probs=43.9

Q ss_pred             HHH-HHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938          184 ICM-GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA  248 (348)
Q Consensus       184 lAr-aL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~  248 (348)
                      .|+ +++.+|.+++|||||+++|..+.+.+.+.|.+..++     +.++|.  .  ..+|+|++++
T Consensus       116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~--~--~~~D~iivnd  172 (198)
T 1lvg_A          116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKE--P--GLFDLVIIND  172 (198)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGS--T--TTCSEEEECS
T ss_pred             CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhc--c--CCceEEEECC
Confidence            566 788899999999999999999999999988876543     234561  1  5689988775

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.35  E-value=7.2e-13  Score=126.39  Aligned_cols=116  Identities=16%  Similarity=0.201  Sum_probs=68.7

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-CCCceEEEc-CeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-VEPEMVKVL-GRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-~~~G~i~i~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      -++++++. .+|++++|+||||||||||+|+|+|+.. |..|.|.+. |.....    ...           ..+++.++
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~-----------~~i~~v~q  268 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTA-----------ARLYHFPH  268 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CC-----------CEEEECTT
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEE-----------EEEEEECC
Confidence            46777775 4899999999999999999999999999 999999876 543210    000           11223322


Q ss_pred             CccccccchHHHHHhccCCCCHHH----HHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHH
Q 018938          132 EVPIQMDVSAEKMIFGVAGIDPQR----RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGL  188 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL  188 (348)
                      ...+....+..+  +.+.....+.    ..++++.+++.  .+..+.+|| ||+||++||+++
T Consensus       269 ~~~l~dtpgv~e--~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          269 GGDVIDSPGVRE--FGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             SCEEEECHHHHT--CCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             CCEecCcccHHH--hhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            222222222322  1222333322    23556666764  366788999 999999999875

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.33  E-value=1.4e-14  Score=139.95  Aligned_cols=175  Identities=11%  Similarity=-0.012  Sum_probs=101.8

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC------------CCcCCCceEEEcCeecccccc-ccccCcccccchhhhhhhh
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGG------------KHMVEPEMVKVLGRSAFHDTA-LTSSGDLSYLGGEWRREVA  127 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G------------l~~~~~G~i~i~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~  127 (348)
                      .+++|..++|+|+||||||||+|+|+|            ...|+.|.+.+.|..+..... ......+... ..+....+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~-i~lvD~pG   94 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF-LTVFDIAG   94 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEE-EEEECTGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcc-eEEEeccc
Confidence            457899999999999999999999999            455777888776632100000 0000000000 00000000


Q ss_pred             hcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCC--cEEEeeccCCCCC
Q 018938          128 FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLD  205 (348)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD  205 (348)
                      +.... .....+. ..+......     .+.++..++...+..+..+||+.            +|  +++++|||++++|
T Consensus        95 l~~~~-s~~e~L~-~~fl~~ir~-----~d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ildeel~~~D  155 (392)
T 1ni3_A           95 LTKGA-STGVGLG-NAFLSHVRA-----VDAIYQVVRAFDDAEIIHVEGDV------------DPIRDLSIIVDELLIKD  155 (392)
T ss_dssp             GCCCC-CSSSSSC-HHHHHHHTT-----CSEEEEEEECCCTTCSSCCSSSS------------CHHHHHHHHHHHHHHHH
T ss_pred             cccCC-cHHHHHH-HHHHHHHHH-----HHHHHHHHhccccceeeeecccc------------CcchhhhhchhhhHHHH
Confidence            00000 0000000 000000000     00011112222234445567653            99  9999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHhcCcEEEEEecChhhhhhhCCEEE-EEcCC-EEeeecCh
Q 018938          206 VLARADLLRFLRKE-CEERGATIIYATHIFDGLENWPSHIV-YVAHG-KLQLAMPM  258 (348)
Q Consensus       206 ~~~~~~l~~~l~~l-~~~~g~tviivtHd~~~~~~~~d~v~-~l~~G-~i~~~g~~  258 (348)
                      +......++.+... .+ .|.||+  +|++..+..+|+++. +|.+| +++..++.
T Consensus       156 ~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~  208 (392)
T 1ni3_A          156 AEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred             HHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence            99999999999887 43 477754  999999999999999 99999 88766543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.31  E-value=6.1e-16  Score=146.85  Aligned_cols=171  Identities=20%  Similarity=0.188  Sum_probs=101.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCC-------CEEEEECCCCCcHHHHHHHHhCCC----cCCCceEEE
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAG-------DRCLLVGSNGAGKTTILKIIGGKH----MVEPEMVKV   98 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~G-------e~~~liG~NGsGKSTLlk~i~Gl~----~~~~G~i~i   98 (348)
                      +++.++++..|+         ...+++++++.+.+|       +.++|+||||+|||||+++|+|.+    .+.+|.+..
T Consensus        18 ~lr~~~l~~~~g---------~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~   88 (334)
T 1in4_A           18 FLRPKSLDEFIG---------QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV   88 (334)
T ss_dssp             TTSCSSGGGCCS---------CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred             HcCCccHHHccC---------cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence            356678887773         457899999999887       899999999999999999999976    344443332


Q ss_pred             cCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc---cCCC--------CHHHHHHHHHHcCCC-
Q 018938           99 LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VAGI--------DPQRRAELIKVLDID-  166 (348)
Q Consensus        99 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~l~~l~l~-  166 (348)
                      .+.++..           .........+.++++...+..  +..+.++.   ....        ....+...+..+++. 
T Consensus        89 ~~~~l~~-----------~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~  155 (334)
T 1in4_A           89 KQGDMAA-----------ILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG  155 (334)
T ss_dssp             SHHHHHH-----------HHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred             CHHHHHH-----------HHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence            2211100           000000112333322111111  22232211   0110        011122223333332 


Q ss_pred             cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938          167 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  243 (348)
Q Consensus       167 ~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~  243 (348)
                      ...++..||+|++||++++                .+||+....++.++|++.++..+     ++|+.+.+..+|++
T Consensus       156 at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~  211 (334)
T 1in4_A          156 ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR  211 (334)
T ss_dssp             EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred             ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence            3456789999999998655                78888889999999998876655     47888888877764

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.31  E-value=2.6e-12  Score=119.79  Aligned_cols=132  Identities=19%  Similarity=0.124  Sum_probs=89.2

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      +.++++++.|+.         ..  ++++|+  +|++++|+|+||+||||+++.|+|++.+..|+|.+.+.+.....   
T Consensus        77 ~~~~~l~~~~~~---------~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~---  140 (295)
T 1ls1_A           77 TVYEALKEALGG---------EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA---  140 (295)
T ss_dssp             HHHHHHHHHTTS---------SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH---
T ss_pred             HHHHHHHHHHCC---------CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh---
Confidence            456788888842         22  788888  99999999999999999999999998888888877664321100   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK  190 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~  190 (348)
                                     ..              ..+            ..+.+..++..-......+-.+.+|.+|+++...
T Consensus       141 ---------------~~--------------~ql------------~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~  179 (295)
T 1ls1_A          141 ---------------AR--------------EQL------------RLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE  179 (295)
T ss_dssp             ---------------HH--------------HHH------------HHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             ---------------HH--------------HHH------------HHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence                           00              000            0011222332100000123334578999999889


Q ss_pred             CCcEEEeecc-CCCCCHHHHHHHHHHHHHH
Q 018938          191 PFKVLLLDEI-TVDLDVLARADLLRFLRKE  219 (348)
Q Consensus       191 ~P~lLlLDEP-tsgLD~~~~~~l~~~l~~l  219 (348)
                      +++++|+||| ++++|......+..+...+
T Consensus       180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~  209 (295)
T 1ls1_A          180 ARDLILVDTAGRLQIDEPLMGELARLKEVL  209 (295)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence            9999999999 9999998777777766543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.31  E-value=1e-12  Score=123.17  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=80.8

Q ss_pred             eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcccc
Q 018938           57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ  136 (348)
Q Consensus        57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (348)
                      .++|...+|++++|+|+|||||||+++.|++.+.+..|+|.+.+.+.+..                    +.        
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~--------------------~a--------  147 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA--------------------AA--------  147 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH--------------------HH--------
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH--------------------HH--------
Confidence            45677789999999999999999999999999888777777655432100                    00        


Q ss_pred             ccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHH---HHHHHHccCCcEEEeeccCCCCCHHHHHHHH
Q 018938          137 MDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRV---QICMGLLKPFKVLLLDEITVDLDVLARADLL  213 (348)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv---~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~  213 (348)
                          .            +....+.+.+++..   +..+|+|+.|++   +|++++..+|+++|+|||..   ......++
T Consensus       148 ----~------------eqL~~~~~~~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~  205 (306)
T 1vma_A          148 ----I------------EQLKIWGERVGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLM  205 (306)
T ss_dssp             ----H------------HHHHHHHHHHTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHH
T ss_pred             ----H------------HHHHHHHHHcCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHH
Confidence                0            01122333444432   346789999999   99999999999999999974   34455666


Q ss_pred             HHHHHHH
Q 018938          214 RFLRKEC  220 (348)
Q Consensus       214 ~~l~~l~  220 (348)
                      +.|.++.
T Consensus       206 ~eL~~l~  212 (306)
T 1vma_A          206 EELRKVH  212 (306)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666553

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.30  E-value=1.1e-13  Score=128.95  Aligned_cols=124  Identities=14%  Similarity=0.071  Sum_probs=69.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc----eEEE-cCeeccccccccccCcccccchhhhhhhhhcCCCccccc
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE----MVKV-LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM  137 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G----~i~i-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (348)
                      .++.+++|+|++|||||||++.|++++.+. |    .+.+ .-...             +.....+..+.+.....+...
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~~~~~~~iv~~D~f-------------~~~~~~~~~l~~~~~~~~l~~   94 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YGGEKSIGYASIDDF-------------YLTHEDQLKLNEQFKNNKLLQ   94 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HGGGSCEEEEEGGGG-------------BCCHHHHHHHHHHTTTCGGGS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CCCCceEEEeccccc-------------cCChHHHHHHhccccccchhh
Confidence            467899999999999999999999986542 1    1111 00000             000000111111000000000


Q ss_pred             cchHHHHHhccC-CCCHHHHHHHHHHcCCC----------cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCH
Q 018938          138 DVSAEKMIFGVA-GIDPQRRAELIKVLDID----------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV  206 (348)
Q Consensus       138 ~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~----------~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~  206 (348)
                             ..+.+ ..+.....+.++.+...          ...+...+||||+||+.+|++...+|+|||+||||+++|+
T Consensus        95 -------~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~  167 (290)
T 1odf_A           95 -------GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP  167 (290)
T ss_dssp             -------SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred             -------hccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCc
Confidence                   00011 12334455556655332          1234478999999999998433339999999999999998


Q ss_pred             H
Q 018938          207 L  207 (348)
Q Consensus       207 ~  207 (348)
                      .
T Consensus       168 ~  168 (290)
T 1odf_A          168 I  168 (290)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.30  E-value=1.8e-14  Score=135.24  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=56.1

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEE-------------------eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTL-------------------NAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i-------------------~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .+|+++||++.|.           +++++++|.+                   .+|+++||+||||||||||+++|+|++
T Consensus        36 ~~i~~~~v~~~y~-----------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           36 EDLSLEEVAEIYL-----------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             TTCCHHHHHHTHH-----------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cccchHhHHHHHH-----------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999993           6899999988                   999999999999999999999999988


Q ss_pred             c--CCCceEEE---cCe
Q 018938           90 M--VEPEMVKV---LGR  101 (348)
Q Consensus        90 ~--~~~G~i~i---~G~  101 (348)
                      .  |++|+|.+   +|.
T Consensus       105 ~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A          105 SRWPEHRRVELITTDGF  121 (308)
T ss_dssp             TTSTTCCCEEEEEGGGG
T ss_pred             hhCCCCCeEEEEecCCc
Confidence            7  89999988   664

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.29  E-value=3.8e-15  Score=133.71  Aligned_cols=39  Identities=18%  Similarity=0.170  Sum_probs=22.9

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh-CCCc
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-GKHM   90 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~-Gl~~   90 (348)
                      .+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            35678999999999999999999999999999999 9863

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.26  E-value=3.3e-12  Score=119.18  Aligned_cols=141  Identities=14%  Similarity=0.179  Sum_probs=86.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchH
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA  141 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (348)
                      .+|++++|+|||||||||+++.|++.+.++.| .|.+.+.+.+..                                 ..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~---------------------------------~a  149 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI---------------------------------AA  149 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST---------------------------------TH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc---------------------------------hH
Confidence            47999999999999999999999998877677 555433221100                                 00


Q ss_pred             HHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHH-
Q 018938          142 EKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC-  220 (348)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~-  220 (348)
                      .+           ......+.+++....   ..+ +..-+.+|++  +.+|+++|+|  |+|+|+.....+.++.+-+. 
T Consensus       150 ~e-----------qL~~~~~~~gl~~~~---~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~  210 (296)
T 2px0_A          150 VE-----------QLKTYAELLQAPLEV---CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPF  210 (296)
T ss_dssp             HH-----------HHHHHHTTTTCCCCB---CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred             HH-----------HHHHHHHhcCCCeEe---cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence            00           000111112222100   112 2334566664  4999999999  99999876655554443221 


Q ss_pred             -HhcCcEEEE-EecChhhhhhhCCEEEEEcCCEEeee
Q 018938          221 -EERGATIIY-ATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       221 -~~~g~tvii-vtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                       ...+.++++ +||..+.+.++|+++..+..+.++..
T Consensus       211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred             cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence             122334444 49999999999998877777777653

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.26  E-value=1.7e-12  Score=128.25  Aligned_cols=52  Identities=17%  Similarity=0.120  Sum_probs=48.4

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF  104 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~  104 (348)
                      ..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            3589999999999 999999999999999999999999999999999997643

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.25  E-value=5.5e-14  Score=124.22  Aligned_cols=138  Identities=16%  Similarity=0.048  Sum_probs=81.3

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeeccccccccccCcccccchhhhhhhhhcC-CCccccc
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG-FEVPIQM  137 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  137 (348)
                      .++|++++|+||||||||||+++|+|++.|.   .|.|.++|.....               ......+... ...+.  
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~---------------~~~~~~~~~~~~~~~~--   81 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN---------------RLLEPRGLLPRKGAPE--   81 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH---------------HHHGGGTCGGGTTSGG--
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH---------------HHHHHhcccccCCCCc--
Confidence            5789999999999999999999999998753   5566655532210               0000010000 00000  


Q ss_pred             cchHHHHHhccCCCCHHHHHHHHHHc--C--C--CcCccCCCCCHHHHHHHHHH-HHHccCCcEEEeeccCCCCCHHHHH
Q 018938          138 DVSAEKMIFGVAGIDPQRRAELIKVL--D--I--DLSWRMHKVSDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLARA  210 (348)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~l~~l--~--l--~~~~~~~~LSgGqrQRv~lA-raL~~~P~lLlLDEPtsgLD~~~~~  210 (348)
                                  ..+.....+.+..+  +  +  ........+|+||+||+++| ++++.++.++++|||..        
T Consensus        82 ------------~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------  141 (208)
T 3c8u_A           82 ------------TFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------  141 (208)
T ss_dssp             ------------GBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------
T ss_pred             ------------hhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh--------
Confidence                        01111122222222  1  1  11122345799999999998 88888888888999841        


Q ss_pred             HHHHHHHHHHHhcCcEEEEEecChhh-hhhhCCE
Q 018938          211 DLLRFLRKECEERGATIIYATHIFDG-LENWPSH  243 (348)
Q Consensus       211 ~l~~~l~~l~~~~g~tviivtHd~~~-~~~~~d~  243 (348)
                         ..+.++    --.+++++++.+. +.+++.|
T Consensus       142 ---~~l~~~----~d~~i~vd~~~~~~~~R~~~R  168 (208)
T 3c8u_A          142 ---RDLTAI----WDVSIRLEVPMADLEARLVQR  168 (208)
T ss_dssp             ---GGGGGT----CSEEEEECCCHHHHHHHHHHH
T ss_pred             ---HHHHHh----cCEEEEEeCCHHHHHHHHHHH
Confidence               111221    2378999999886 5666666

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.24  E-value=1.4e-11  Score=121.58  Aligned_cols=176  Identities=11%  Similarity=0.123  Sum_probs=110.8

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEEcCeeccccccccccCcccccchhhhhhh-hhc
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTSSGDLSYLGGEWRREV-AFA  129 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  129 (348)
                      .+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+....              ...+..++ +..
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s--------------~~~l~~r~~~~~  255 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS--------------AQQLVMRMLCAE  255 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC--------------HHHHHHHHHHHH
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC--------------HHHHHHHHHHHH
Confidence            4678999888999999999999999999999999886544334 3443321100              00111111 000


Q ss_pred             CCCccccccchHHHHHhccCCCCH---HHHHHHHHHcCCC-c-CccCCCCCHHHHHHHHHHHHHc--cCCcEEEeeccCC
Q 018938          130 GFEVPIQMDVSAEKMIFGVAGIDP---QRRAELIKVLDID-L-SWRMHKVSDGQRRRVQICMGLL--KPFKVLLLDEITV  202 (348)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~l~-~-~~~~~~LSgGqrQRv~lAraL~--~~P~lLlLDEPts  202 (348)
                       ..      +....+..+  ....   .+..+.+..++.. . -.....+|.++.+  +.|+.++  .+|+++|+|+++.
T Consensus       256 -~~------~~~~~l~~g--~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~  324 (454)
T 2r6a_A          256 -GN------INAQNLRTG--KLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL  324 (454)
T ss_dssp             -HT------CCHHHHHTS--CCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred             -cC------CCHHHHhcC--CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence             00      001111111  1122   2233334433321 1 1224679999887  5566665  7899999999998


Q ss_pred             CCC--------HHHHHHHHHHHHHHHHhcCcEEEEEec---------C--hh--------hhhhhCCEEEEEcCCEE
Q 018938          203 DLD--------VLARADLLRFLRKECEERGATIIYATH---------I--FD--------GLENWPSHIVYVAHGKL  252 (348)
Q Consensus       203 gLD--------~~~~~~l~~~l~~l~~~~g~tviivtH---------d--~~--------~~~~~~d~v~~l~~G~i  252 (348)
                      ..+        ......+...|+.++++.+++||+++|         |  +.        .+++.||.|++|+.++.
T Consensus       325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence            774        334467888899998888999999999         3  22        57788999999987754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.21  E-value=1.4e-14  Score=133.90  Aligned_cols=144  Identities=16%  Similarity=0.132  Sum_probs=83.5

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      ..++++++|++++|  ++|+||||||||||+|+|+|...+  +.+.++|..+....          .+ ...+.+.+.++
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~----------~~-~~~~~i~~vf~   97 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMY----------VG-ESERAVRQVFQ   97 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSST----------TH-HHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhh----------hh-HHHHHHHHHHH
Confidence            46889999999999  999999999999999999997644  78888876432110          00 11111222111


Q ss_pred             Cc-cccccch-HHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCC-------
Q 018938          132 EV-PIQMDVS-AEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV-------  202 (348)
Q Consensus       132 ~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPts-------  202 (348)
                      .. ...+.+. .+++-...........    ....-..++.+.+|||||+||+.|++|+.++|++|  |||+.       
T Consensus        98 ~a~~~~p~i~~~Deid~~~~~r~~~~~----~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~  171 (274)
T 2x8a_A           98 RAKNSAPCVIFFDEVDALCPRRSDRET----GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK  171 (274)
T ss_dssp             HHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred             HHHhcCCCeEeeehhhhhhcccCCCcc----hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence            00 0000000 0000000000000000    00000013346789999999999999999999975  99964       


Q ss_pred             -----CCCHHHHHHHHHHH
Q 018938          203 -----DLDVLARADLLRFL  216 (348)
Q Consensus       203 -----gLD~~~~~~l~~~l  216 (348)
                           -.|...+..+++.+
T Consensus       172 ~i~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          172 TLFVGLPPPADRLAILKTI  190 (274)
T ss_dssp             EEECCSCCHHHHHHHHHHH
T ss_pred             EEEeCCcCHHHHHHHHHHH
Confidence                 34777777776654

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.21  E-value=1e-12  Score=130.71  Aligned_cols=174  Identities=16%  Similarity=0.126  Sum_probs=102.1

Q ss_pred             eeeeEEeCCCEEEEECCCCCcHHHHHHHHhC--CCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938           57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGG--KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP  134 (348)
Q Consensus        57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G--l~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (348)
                      .+++++.++..+.|.|++||||||++++|..  +...+++.+.+.+.+... ..      +..    +. .+.... . .
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~e------l~~----~~-~lPhl~-~-~  224 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LE------LSV----YE-GIPHLL-T-E  224 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SG------GGG----GT-TCTTBS-S-S
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hh------hhh----hc-cCCccc-c-e
Confidence            5778889999999999999999999999875  556677887776654321 00      000    00 000000 0 0


Q ss_pred             ccccch-HHHHHhccCCCCHHHHHHHHHHcCCCc----Cc-cCCCCCHHHHHHH----------HHHHHHccCCc-EEEe
Q 018938          135 IQMDVS-AEKMIFGVAGIDPQRRAELIKVLDIDL----SW-RMHKVSDGQRRRV----------QICMGLLKPFK-VLLL  197 (348)
Q Consensus       135 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~-~~~~LSgGqrQRv----------~lAraL~~~P~-lLlL  197 (348)
                      ...+.. ....+..... ..++..+++...|+..    +. ....+|+||+|+.          .+|+++...|. ++++
T Consensus       225 Vvtd~~~a~~~L~~~~~-EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI  303 (512)
T 2ius_A          225 VVTDMKDAANALRWCVN-EMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV  303 (512)
T ss_dssp             CBCSHHHHHHHHHHHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred             eecCHHHHHHHHHHHHH-HHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence            000000 0111100000 1123345666666531    11 1246788888752          36677788898 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHH---HHhcCcEEEEEecChh-------hhhhhCCEEEE
Q 018938          198 DEITVDLDVLARADLLRFLRKE---CEERGATIIYATHIFD-------GLENWPSHIVY  246 (348)
Q Consensus       198 DEPtsgLD~~~~~~l~~~l~~l---~~~~g~tviivtHd~~-------~~~~~~d~v~~  246 (348)
                      ||+++-+|.. ...+.+.|.++   .+..|.++|++||++.       ....+.+||.+
T Consensus       304 DE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          304 DEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             ETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             eCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence            9999988843 33455555544   4455889999999987       44566677765

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.18  E-value=9.2e-11  Score=111.84  Aligned_cols=77  Identities=18%  Similarity=0.255  Sum_probs=52.1

Q ss_pred             HHHHHHHHHccC--CcEEEeeccCCCC----------CH---HHHHHHHHHHHHH---HHhcCcEEEEEecChh------
Q 018938          180 RRVQICMGLLKP--FKVLLLDEITVDL----------DV---LARADLLRFLRKE---CEERGATIIYATHIFD------  235 (348)
Q Consensus       180 QRv~lAraL~~~--P~lLlLDEPtsgL----------D~---~~~~~l~~~l~~l---~~~~g~tviivtHd~~------  235 (348)
                      |-+.++++++.+  |+++|+|||++.+          |+   ...+.+.+.++++   +++.|+|||+++|...      
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~  205 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF  205 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            345677877654  9999999999998          33   1222334444444   4677999999999754      


Q ss_pred             ----------hhhhhCCEEEEEcCCEEeeec
Q 018938          236 ----------GLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       236 ----------~~~~~~d~v~~l~~G~i~~~g  256 (348)
                                .+..+||.++.++.+++...|
T Consensus       206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g  236 (349)
T 2zr9_A          206 GSPETTTGGKALKFYASVRLDVRRIETLKDG  236 (349)
T ss_dssp             ----CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred             CCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence                      256789999998877654433

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.14  E-value=2.1e-12  Score=120.89  Aligned_cols=115  Identities=19%  Similarity=0.213  Sum_probs=67.6

Q ss_pred             eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE---cCeeccccccccccCcccccchhhhhhhhhcCCCcc--
Q 018938           60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV---LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP--  134 (348)
Q Consensus        60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  134 (348)
                      +++.+|++++|+||||||||||+|+|+ +..|+.|+|.+   +|............           ..++++.+.+.  
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~-----------~~~g~v~d~pg~~  227 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPF-----------GKGSFVGDTPGFS  227 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEE-----------TTTEEEESSCCCS
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEc-----------CCCcEEEECcCcC
Confidence            345679999999999999999999999 99999999998   78654322110000           01222211110  


Q ss_pred             ---ccccchHHHH--Hhc--------c----C-CCCHHHHHHHHHHcCCCc---CccCCCCCHHHHHHHHHHH
Q 018938          135 ---IQMDVSAEKM--IFG--------V----A-GIDPQRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICM  186 (348)
Q Consensus       135 ---~~~~~~~~~~--~~~--------~----~-~~~~~~~~~~l~~l~l~~---~~~~~~LSgGqrQRv~lAr  186 (348)
                         +...++.+++  .+.        +    + .....++.++++.+++..   ++++..|||.+++++.|||
T Consensus       228 ~~~l~~~lt~e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          228 KVEATMFVKPREVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             SCCGGGTSCGGGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             cCcccccCCHHHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence               0011222221  111        1    1 112346788999999863   5578899998899999986

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.94  E-value=7.4e-10  Score=95.88  Aligned_cols=37  Identities=8%  Similarity=0.046  Sum_probs=33.3

Q ss_pred             HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHH
Q 018938          180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK  218 (348)
Q Consensus       180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~  218 (348)
                      +.+.+|++|+.+|+++++|  ||++|..+..++++.|.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            3467899999999999999  999999999999998865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.90  E-value=1.2e-09  Score=95.62  Aligned_cols=126  Identities=17%  Similarity=0.150  Sum_probs=76.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF  146 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (348)
                      +++|+|+|||||||+.++|+++     |...+++..                   +.+.+..                  
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~-------------------~~~~~~~------------------   41 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV-------------------VAREVVA------------------   41 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH-------------------HHHHTTC------------------
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH-------------------HHHHHcc------------------
Confidence            6899999999999999999983     332222110                   0000000                  


Q ss_pred             ccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 018938          147 GVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  226 (348)
Q Consensus       147 ~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~t  226 (348)
                        .  ......++.+.+|...     -.|.|+.+|..++..+..+|+.+..+  ++.++|..+..+.+.+...   .+.+
T Consensus        42 --~--~~~~~~~i~~~~g~~~-----~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~  107 (206)
T 1jjv_A           42 --K--DSPLLSKIVEHFGAQI-----LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPY  107 (206)
T ss_dssp             --S--SCHHHHHHHHHHCTTC-----C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSE
T ss_pred             --C--ChHHHHHHHHHhCHHH-----hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCE
Confidence              0  0112334555555321     13678999999999988888755443  4456777777666655432   2568


Q ss_pred             EEEEecChhhh--hhhCCEEEEEc
Q 018938          227 IIYATHIFDGL--ENWPSHIVYVA  248 (348)
Q Consensus       227 viivtHd~~~~--~~~~d~v~~l~  248 (348)
                      ||+.+|.+.+.  ...||.+++++
T Consensus       108 vv~~~~~l~e~~~~~~~d~vi~l~  131 (206)
T 1jjv_A          108 TLFVVPLLIENKLTALCDRILVVD  131 (206)
T ss_dssp             EEEECTTTTTTTCGGGCSEEEEEE
T ss_pred             EEEEechhhhcCcHhhCCEEEEEE
Confidence            99999998776  67799988874

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.89  E-value=2.1e-11  Score=109.30  Aligned_cols=57  Identities=18%  Similarity=0.244  Sum_probs=42.7

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA  103 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~  103 (348)
                      .|+++|++..|+         .       +|+|.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++
T Consensus         9 ~l~l~~~~~~~~---------~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A            9 SLTLINWNGFFA---------R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             EEEEEEETTEEE---------E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred             EEEEEeeecccC---------C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence            588888876652         1       455666 89999999999999999999999999999999998764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.89  E-value=9.9e-10  Score=95.75  Aligned_cols=41  Identities=17%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938           59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA  103 (348)
Q Consensus        59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~  103 (348)
                      |+++++|++++|+||||||||||+++|+|++ |   .+.+.+...
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~   41 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHT   41 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceec
Confidence            6788999999999999999999999999985 3   466666543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.88  E-value=2.7e-09  Score=101.76  Aligned_cols=48  Identities=17%  Similarity=0.030  Sum_probs=36.1

Q ss_pred             ceeeeeee--EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE-EEcC
Q 018938           53 PLINDFTL--TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV-KVLG  100 (348)
Q Consensus        53 ~~l~~vsl--~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i-~i~G  100 (348)
                      +.|+.+-=  -+++|+++.|.||||||||||+..+++...+..|.+ ++++
T Consensus        47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~   97 (356)
T 3hr8_A           47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA   97 (356)
T ss_dssp             HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence            44554422  488999999999999999999999998765555654 4443

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.87  E-value=1.2e-10  Score=105.99  Aligned_cols=52  Identities=25%  Similarity=0.393  Sum_probs=35.4

Q ss_pred             CeEEEece-EEEecCCCCCCCCCCCceeeeeeeEEeC---CCEEEEECCCCCcHHHHHHHHhCC
Q 018938           29 PTVEINAL-KFTYPGIDGHPPPGSTPLINDFTLTLNA---GDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        29 ~~l~v~~l-s~~y~~~~~~~~~g~~~~l~~vsl~i~~---Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++|+++|| +|+|+        +..++|+++||+|.+   |++++|+|++||||||+.++|++.
T Consensus        16 ~~l~~~~~~~~~~~--------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           16 ALLETGSLLHSPFD--------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             ------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CceEEcceeeEEec--------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999 99993        246899999999999   999999999999999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.87  E-value=1e-10  Score=109.41  Aligned_cols=44  Identities=16%  Similarity=0.336  Sum_probs=26.9

Q ss_pred             eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE---cCeec
Q 018938           60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV---LGRSA  103 (348)
Q Consensus        60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i---~G~~~  103 (348)
                      +++.+|++++|+||||||||||+|+|+|+..|..|.|.+   .|+..
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t  214 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT  214 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc
Confidence            677899999999999999999999999999999999988   66543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.81  E-value=1.8e-12  Score=119.47  Aligned_cols=58  Identities=21%  Similarity=0.409  Sum_probs=47.0

Q ss_pred             EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      +++++.+.|.         ...++++++|++++|  ++|+||||||||||+++|++..  ..|.+.+++.+
T Consensus        51 ~l~~l~~~~~---------~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~--~~~~i~~~~~~  108 (278)
T 1iy2_A           51 ELKEIVEFLK---------NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA--RVPFITASGSD  108 (278)
T ss_dssp             HHHHHHHHHH---------CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT--TCCEEEEEHHH
T ss_pred             HHHHHHHHHH---------CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc--CCCEEEecHHH
Confidence            3456666663         346889999999999  8999999999999999999975  37788887754

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.79  E-value=3.5e-09  Score=104.77  Aligned_cols=117  Identities=21%  Similarity=0.253  Sum_probs=77.6

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCC
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFE  132 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (348)
                      ..++++++.+++|  +.|+||+|+|||||+++|++....  --+.+++                                
T Consensus        39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~--~f~~is~--------------------------------   82 (476)
T 2ce7_A           39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV--PFFHISG--------------------------------   82 (476)
T ss_dssp             HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG--------------------------------
T ss_pred             HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCH--------------------------------
Confidence            4677778888888  789999999999999999983200  0000000                                


Q ss_pred             ccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeecc----------CC
Q 018938          133 VPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI----------TV  202 (348)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEP----------ts  202 (348)
                               .++.   ..                   ..+  +|++++|..+++|....|.+|++||+          ++
T Consensus        83 ---------~~~~---~~-------------------~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~  129 (476)
T 2ce7_A           83 ---------SDFV---EL-------------------FVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG  129 (476)
T ss_dssp             ---------GGTT---TC-------------------CTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC------
T ss_pred             ---------HHHH---HH-------------------Hhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC
Confidence                     0000   00                   000  26788899999999999999999999          34


Q ss_pred             CCCHHHHHHHHHHHHHHH---HhcCcEEEEEecChhhhh
Q 018938          203 DLDVLARADLLRFLRKEC---EERGATIIYATHIFDGLE  238 (348)
Q Consensus       203 gLD~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~  238 (348)
                      |.|......+.+++..+-   ...+..||.+||+.+.+.
T Consensus       130 g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld  168 (476)
T 2ce7_A          130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD  168 (476)
T ss_dssp             ---CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred             cCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence            677777666777776652   234788999999987653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.76  E-value=6.9e-10  Score=96.46  Aligned_cols=37  Identities=11%  Similarity=0.141  Sum_probs=32.7

Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC  220 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~  220 (348)
                      ...|++|+.+|+++++|  ||++|..+..++++.|.+..
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            45689999999999999  99999999999999887654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.75  E-value=1.8e-09  Score=110.15  Aligned_cols=162  Identities=15%  Similarity=0.147  Sum_probs=91.3

Q ss_pred             CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC-ceEEEcCeeccccccccccCcccccchhhhh----
Q 018938           50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP-EMVKVLGRSAFHDTALTSSGDLSYLGGEWRR----  124 (348)
Q Consensus        50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~-G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~----  124 (348)
                      |...+++++++.+.+|+.++|+||||+|||||+++|++++.+.. |.+.+.+.......     ..+.++......    
T Consensus        45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~~~~~~e  119 (604)
T 3k1j_A           45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQGRRIVE  119 (604)
T ss_dssp             SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTHHHHHHH
T ss_pred             CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecchHHHHHH
Confidence            35678999999999999999999999999999999999988776 56666654321100     011111100000    


Q ss_pred             -------------hhhhcCCCccccccchHHHHHh-ccC--CCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH
Q 018938          125 -------------EVAFAGFEVPIQMDVSAEKMIF-GVA--GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL  188 (348)
Q Consensus       125 -------------~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL  188 (348)
                                   ...+.........++...+... ...  .........++..+... ......+|+|++|++..++..
T Consensus       120 ~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~-~~~~g~~~~g~~~~i~~g~~~  198 (604)
T 3k1j_A          120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD-PFQSGGLGTPAHERVEPGMIH  198 (604)
T ss_dssp             HHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC-CC----CCCCGGGGEECCHHH
T ss_pred             HHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec-hhhcCCccccccccccCceee
Confidence                         0000000000000000000000 000  00000111222211111 122357999999999999999


Q ss_pred             ccCCcEEEeeccCCCCCHHHHHHHHHHHHH
Q 018938          189 LKPFKVLLLDEITVDLDVLARADLLRFLRK  218 (348)
Q Consensus       189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~  218 (348)
                      ..++.+|+|||... |++..+..+++.|.+
T Consensus       199 ~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          199 RAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             HTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             ecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            99999999999988 899988888888864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.75  E-value=2.6e-09  Score=99.60  Aligned_cols=45  Identities=22%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE---cCeecc
Q 018938           60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV---LGRSAF  104 (348)
Q Consensus        60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i---~G~~~~  104 (348)
                      |++.+|++++|+||||||||||+|+|+|+..|+.|+|.+   +|..+.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t  211 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT  211 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CC
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCce
Confidence            556789999999999999999999999999999999998   786543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.71  E-value=7.1e-09  Score=88.78  Aligned_cols=39  Identities=23%  Similarity=0.217  Sum_probs=34.7

Q ss_pred             eeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCce
Q 018938           56 NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEM   95 (348)
Q Consensus        56 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~   95 (348)
                      ++++|++.+| +++|+||||||||||+++|.+++.+..|.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~   56 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK   56 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence            7889999999 99999999999999999999987666553

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.69  E-value=9.9e-09  Score=107.45  Aligned_cols=73  Identities=19%  Similarity=0.160  Sum_probs=58.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEE-ecChhhhhhhCCE
Q 018938          170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYA-THIFDGLENWPSH  243 (348)
Q Consensus       170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPts-gLD~~~~~~l~~~l~~l~~~~g~tviiv-tHd~~~~~~~~d~  243 (348)
                      .+.-+|.|+.+|..++++++.++++||+|||.. +||......++..+.... ....+|+++ ||+.+.+..+++.
T Consensus       187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~  261 (773)
T 2xau_A          187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFND  261 (773)
T ss_dssp             SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTS
T ss_pred             CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcC
Confidence            456689999999999999999999999999996 999877666666555443 235677774 9999888877764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.67  E-value=1e-09  Score=95.86  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=43.7

Q ss_pred             eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE--EEcCe
Q 018938           34 NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV--KVLGR  101 (348)
Q Consensus        34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i--~i~G~  101 (348)
                      +|+++.+         +...+.+..++..++|++++|+||||||||||+++|++.+. .+|.+  .++|.
T Consensus         3 ~~~~~~~---------~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d   62 (200)
T 3uie_A            3 TNIKWHE---------CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGD   62 (200)
T ss_dssp             ----------------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHH
T ss_pred             CCCcccc---------cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCc
Confidence            4666666         34667888999999999999999999999999999999875 67776  66664

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.65  E-value=1.3e-07  Score=89.81  Aligned_cols=56  Identities=21%  Similarity=0.271  Sum_probs=39.6

Q ss_pred             HHHHHHHHHc----cCCcEEEeeccCCCCCHH------------HHHHHHHHHHHHHHhcCcEEEEEecChh
Q 018938          180 RRVQICMGLL----KPFKVLLLDEITVDLDVL------------ARADLLRFLRKECEERGATIIYATHIFD  235 (348)
Q Consensus       180 QRv~lAraL~----~~P~lLlLDEPtsgLD~~------------~~~~l~~~l~~l~~~~g~tviivtHd~~  235 (348)
                      +.+..++.++    .+++++|+|+.++-....            ...+++..|+.++++.+.+||+++|...
T Consensus       204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~  275 (343)
T 1v5w_A          204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA  275 (343)
T ss_dssp             HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred             HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence            4444455555    679999999999876442            1345666777788888999999999654

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.62  E-value=1.7e-07  Score=88.17  Aligned_cols=57  Identities=16%  Similarity=0.210  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHc---cCCcEEEeeccCCCCCH--------HH----HHHHHHHHHHHHHhcCcEEEEEecChh
Q 018938          179 RRRVQICMGLL---KPFKVLLLDEITVDLDV--------LA----RADLLRFLRKECEERGATIIYATHIFD  235 (348)
Q Consensus       179 rQRv~lAraL~---~~P~lLlLDEPtsgLD~--------~~----~~~l~~~l~~l~~~~g~tviivtHd~~  235 (348)
                      .+.+..++.++   .+|+++|+|+.++-...        ..    ..+++..|+.++++.+.+||+++|-..
T Consensus       188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~  259 (324)
T 2z43_A          188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA  259 (324)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence            35566777777   67999999999876532        11    345666777777888999999998654

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.61  E-value=4.7e-08  Score=92.45  Aligned_cols=129  Identities=18%  Similarity=0.267  Sum_probs=83.3

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      .+.|+.+.--+.+|+++.|.|++|+|||||+.-++.......+.|.+                              ...
T Consensus        33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~------------------------------fSl   82 (338)
T 4a1f_A           33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV------------------------------FSL   82 (338)
T ss_dssp             CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE------------------------------EES
T ss_pred             ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE------------------------------EeC
Confidence            45677777779999999999999999999998887532111111111                              000


Q ss_pred             CccccccchHHHHHhccCCCCHHHHHHHHH-HcCCCcCc-cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHH
Q 018938          132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIK-VLDIDLSW-RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR  209 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~l~~~~-~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~  209 (348)
                            .++..++.           ..++. ..++...+ +-..||.++++|+..|...+.+++++|.|+|...++    
T Consensus        83 ------Ems~~ql~-----------~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~----  141 (338)
T 4a1f_A           83 ------EMSAEQLA-----------LRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE----  141 (338)
T ss_dssp             ------SSCHHHHH-----------HHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH----
T ss_pred             ------CCCHHHHH-----------HHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH----
Confidence                  01111111           11111 11222111 124799999999999999999999999999875533    


Q ss_pred             HHHHHHHHHHHHhc-CcEEEEEec
Q 018938          210 ADLLRFLRKECEER-GATIIYATH  232 (348)
Q Consensus       210 ~~l~~~l~~l~~~~-g~tviivtH  232 (348)
                       .|...++++.++. |..+|+|-|
T Consensus       142 -~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          142 -QIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             -HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             -HHHHHHHHHHHhcCCCCEEEEec
Confidence             6667777777676 788888865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.56  E-value=2.4e-08  Score=86.92  Aligned_cols=35  Identities=26%  Similarity=0.251  Sum_probs=28.8

Q ss_pred             eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc
Q 018938           60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE   94 (348)
Q Consensus        60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G   94 (348)
                      ++|++|++++|+|||||||||++++|++++.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            46889999999999999999999999998755443

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.56  E-value=1.3e-07  Score=90.58  Aligned_cols=62  Identities=11%  Similarity=0.107  Sum_probs=44.9

Q ss_pred             HHHHHHcCCCc------CccCCCCCHHHHHHHHHH----HHH-ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh
Q 018938          157 AELIKVLDIDL------SWRMHKVSDGQRRRVQIC----MGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  222 (348)
Q Consensus       157 ~~~l~~l~l~~------~~~~~~LSgGqrQRv~lA----raL-~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~  222 (348)
                      .++++.+++..      ..++..+|+|++|++.++    +++ ..+|++    +|+|++|..+...+++.|.++...
T Consensus       282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          282 FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence            45566655421      234667898899988877    666 445554    899999999999999999887644

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.53  E-value=1.4e-07  Score=90.01  Aligned_cols=60  Identities=10%  Similarity=0.079  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 018938          172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH  232 (348)
Q Consensus       172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtH  232 (348)
                      .+.++.++|+..+++..+.+|+++||.-..+..|... ...+.+++.+......+|+++|.
T Consensus       153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            3467889999999999999999888885444555443 34455666654332357777776

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.53  E-value=2.6e-08  Score=86.89  Aligned_cols=45  Identities=20%  Similarity=0.240  Sum_probs=30.9

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      +..+..++.++|++++|+||||||||||+++|+|.+    |.+.++|..
T Consensus        18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~   62 (200)
T 4eun_A           18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADA   62 (200)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGG
T ss_pred             hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccc
Confidence            444445677899999999999999999999999964    777777643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.51  E-value=2.3e-07  Score=88.33  Aligned_cols=65  Identities=6%  Similarity=0.122  Sum_probs=51.2

Q ss_pred             ccCCCCCHHHHHHHHHHHHHccCCcEEEee-ccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe--cChhh
Q 018938          169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLD-EITVDLDVLARADLLRFLRKECEERGATIIYAT--HIFDG  236 (348)
Q Consensus       169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLD-EPtsgLD~~~~~~l~~~l~~l~~~~g~tviivt--Hd~~~  236 (348)
                      ..+..+|+|++|++. +.+...++-++++| +|++++|......+++.+.+...  +..+|+|.  ||+..
T Consensus       227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~  294 (357)
T 2e87_A          227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVAD  294 (357)
T ss_dssp             SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCC
T ss_pred             cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCC
Confidence            346688999998876 66666788899999 99999999988887777766432  67888888  88753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.49  E-value=3.7e-07  Score=86.82  Aligned_cols=51  Identities=14%  Similarity=0.062  Sum_probs=39.0

Q ss_pred             cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEEecChhhhhhhC
Q 018938          190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEE--RGATIIYATHIFDGLENWP  241 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--~g~tviivtHd~~~~~~~~  241 (348)
                      .+|.+|++||+... |+.....+..++.++...  .+.++|++||+.+....+.
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~  176 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD  176 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence            56889999999876 988888888887665431  4789999999987555443

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=6.7e-08  Score=84.15  Aligned_cols=38  Identities=34%  Similarity=0.309  Sum_probs=23.9

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ...+++||||++++|++++|+|++||||||+.+.|++.
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46799999999999999999999999999999999864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.39  E-value=3.5e-08  Score=89.47  Aligned_cols=41  Identities=20%  Similarity=0.257  Sum_probs=33.3

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh---CCCcCCCceEE
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG---GKHMVEPEMVK   97 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~---Gl~~~~~G~i~   97 (348)
                      ++++.+   ++|++++|+|||||||||++++|+   |+..++.|.+.
T Consensus        19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            444443   789999999999999999999999   99888888765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.39  E-value=6.8e-07  Score=87.17  Aligned_cols=39  Identities=23%  Similarity=0.129  Sum_probs=32.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      ++.+++++|+|||||||++..|++.+.+..+.|.+.+.+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            578999999999999999999998877766677665443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.34  E-value=1.6e-07  Score=80.48  Aligned_cols=27  Identities=26%  Similarity=0.436  Sum_probs=25.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCc
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKHM   90 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~   90 (348)
                      +|++++|+||||||||||+++|++.++
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            689999999999999999999999764

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.34  E-value=1.3e-07  Score=84.38  Aligned_cols=40  Identities=23%  Similarity=0.173  Sum_probs=34.4

Q ss_pred             eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      +.+.++|++++|+|+||||||||+++|+|+    .|.|.+.+.+
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~   53 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP   53 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence            445578999999999999999999999996    6788887764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.33  E-value=1.3e-08  Score=92.01  Aligned_cols=59  Identities=20%  Similarity=0.392  Sum_probs=48.1

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      .+++++++.|.         ...+++++++++++|  ++|+||||||||||+++|++..  ..|.+.++|..
T Consensus        26 ~~l~~l~~~~~---------~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~--~~~~i~~~~~~   84 (254)
T 1ixz_A           26 EELKEIVEFLK---------NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA--RVPFITASGSD   84 (254)
T ss_dssp             HHHHHHHHHHH---------CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT--TCCEEEEEHHH
T ss_pred             HHHHHHHHHHH---------CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh--CCCEEEeeHHH
Confidence            34567777773         346899999999999  8999999999999999999975  36777777653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.32  E-value=1.1e-08  Score=96.28  Aligned_cols=50  Identities=16%  Similarity=0.165  Sum_probs=41.0

Q ss_pred             CCceeeeeeeEEeCCC------EEEEECCCCCcHHHHHHHHhCCCc--CCCceEEEcC
Q 018938           51 STPLINDFTLTLNAGD------RCLLVGSNGAGKTTILKIIGGKHM--VEPEMVKVLG  100 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge------~~~liG~NGsGKSTLlk~i~Gl~~--~~~G~i~i~G  100 (348)
                      ...+|.+++..+..+.      ++||+||||||||||+++|++++.  |+.|.+.+.+
T Consensus        72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~  129 (321)
T 3tqc_A           72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT  129 (321)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence            4678888999998887      999999999999999999999875  4556654433

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.30  E-value=1.2e-07  Score=82.85  Aligned_cols=42  Identities=17%  Similarity=0.026  Sum_probs=35.7

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      ..++|++++|+|+||||||||+++|++.+.+..|.+.+.+.+
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d   59 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence            357899999999999999999999999887777877765543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.27  E-value=5.7e-07  Score=88.13  Aligned_cols=68  Identities=16%  Similarity=0.289  Sum_probs=47.0

Q ss_pred             cCCcEEEeeccCCCCCH-HHHHHHHHHHHHHHHhcCcEEEEEecCh-hhhhhhCCEEEE-EcCCEEeeecCh
Q 018938          190 KPFKVLLLDEITVDLDV-LARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVY-VAHGKLQLAMPM  258 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD~-~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~v~~-l~~G~i~~~g~~  258 (348)
                      .+|++||+||+..-.+. ..+..++..+..+. +.|+.||++||+. ..+..+.+++.- +..|.++...++
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p  263 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP  263 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence            48999999999877664 67788889888875 4588999999983 333333344332 455666555444

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.25  E-value=1.5e-07  Score=88.40  Aligned_cols=49  Identities=24%  Similarity=0.191  Sum_probs=42.9

Q ss_pred             eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938           55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA  103 (348)
Q Consensus        55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~  103 (348)
                      +.+++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3689999999999999999999999999999999888888888766543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.24  E-value=3.9e-07  Score=86.33  Aligned_cols=27  Identities=26%  Similarity=0.477  Sum_probs=23.9

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ..+..+.|.||+|+|||||++.+++..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999854

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.23  E-value=3.9e-07  Score=79.63  Aligned_cols=31  Identities=19%  Similarity=0.449  Sum_probs=25.8

Q ss_pred             eeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      |+...+|++++|+||||||||||++.|++.+
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3444589999999999999999999999865

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.23  E-value=5.1e-07  Score=79.23  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=26.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCcC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKHMV   91 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~   91 (348)
                      ++|++++|+||||||||||++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            58999999999999999999999998654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.21  E-value=4.5e-07  Score=93.40  Aligned_cols=38  Identities=29%  Similarity=0.170  Sum_probs=29.1

Q ss_pred             eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC--CCceE
Q 018938           59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV--EPEMV   96 (348)
Q Consensus        59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~--~~G~i   96 (348)
                      |+++++|..++|+|+||||||||++.|++...+  ..|+|
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            466788999999999999999999999965433  45555

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.21  E-value=1.8e-07  Score=89.88  Aligned_cols=43  Identities=14%  Similarity=0.086  Sum_probs=37.7

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK   97 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~   97 (348)
                      ..+|+++++.+++|++++|+||||||||||+++|+|.   ..|.+.
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~  198 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKAL  198 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEE
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEE
Confidence            3589999999999999999999999999999999984   356543

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.20  E-value=1.6e-06  Score=81.20  Aligned_cols=130  Identities=12%  Similarity=0.158  Sum_probs=81.1

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      .+.|+.+.--+++|+++.|.|++|+|||||+..++.... ..|      .                       .+.|...
T Consensus        55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g------~-----------------------~vl~~sl  104 (315)
T 3bh0_A           55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DND------D-----------------------VVNLHSL  104 (315)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT------C-----------------------EEEEEES
T ss_pred             hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC------C-----------------------eEEEEEC
Confidence            457888877799999999999999999999887764210 011      0                       0011101


Q ss_pred             CccccccchHHHHHhccCCCCHHHHHHHHHH-cCCCcCc-cCCC--CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHH
Q 018938          132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKV-LDIDLSW-RMHK--VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL  207 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~-~~~~--LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~  207 (348)
                      +      .+..++           ...++.. .+++..+ .-..  ||.++++|+..|...+.++++++.|+|...  + 
T Consensus       105 E------~s~~~l-----------~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~-  164 (315)
T 3bh0_A          105 E------MGKKEN-----------IKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V-  164 (315)
T ss_dssp             S------SCHHHH-----------HHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H-
T ss_pred             C------CCHHHH-----------HHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H-
Confidence            1      111111           0111111 1222110 1122  899999999999999999999999998644  3 


Q ss_pred             HHHHHHHHHHHHHHhcCcE--EEEEecC
Q 018938          208 ARADLLRFLRKECEERGAT--IIYATHI  233 (348)
Q Consensus       208 ~~~~l~~~l~~l~~~~g~t--viivtHd  233 (348)
                        ..+...++++.++.|..  +|+|-|-
T Consensus       165 --~~i~~~i~~l~~~~~~~~~lVVID~l  190 (315)
T 3bh0_A          165 --NYIWSKTRQTKRKNPGKRVIVMIDYL  190 (315)
T ss_dssp             --HHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred             --HHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence              35666677776666777  8888764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.20  E-value=2.4e-06  Score=79.46  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=49.4

Q ss_pred             CCHHHHHHHHHHHHHc--cCCcEEEeeccCCCCCHHH-HHHHHHHHHHHHHhcCc--EEEEEecChhhhhhhCCEEE
Q 018938          174 VSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLA-RADLLRFLRKECEERGA--TIIYATHIFDGLENWPSHIV  245 (348)
Q Consensus       174 LSgGqrQRv~lAraL~--~~P~lLlLDEPtsgLD~~~-~~~l~~~l~~l~~~~g~--tviivtHd~~~~~~~~d~v~  245 (348)
                      +|.|++   .+++.+.  ..|.++++    |.+|... +..+.+.+.++.+..+.  .+.+++|+-+.+..++|.+.
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~  170 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR  170 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence            898886   5566666  78999999    8999877 67788888888765554  67778888777777766654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.20  E-value=1.5e-05  Score=75.95  Aligned_cols=71  Identities=15%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             HHHHHHHHc--cCCcEEEeeccCCCCCHH------------HH----HHHHHHHHHHHHhcCcEEEEEecChh-------
Q 018938          181 RVQICMGLL--KPFKVLLLDEITVDLDVL------------AR----ADLLRFLRKECEERGATIIYATHIFD-------  235 (348)
Q Consensus       181 Rv~lAraL~--~~P~lLlLDEPtsgLD~~------------~~----~~l~~~l~~l~~~~g~tviivtHd~~-------  235 (348)
                      -..+++.++  .+++++|+|.+++-....            .+    .+++..|..++++.+++||+++|-..       
T Consensus       129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg  208 (356)
T 1u94_A          129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  208 (356)
T ss_dssp             HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred             HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence            345555553  689999999999876311            11    23333444446778999999999643       


Q ss_pred             ---------hhhhhCCEEEEEcCCE
Q 018938          236 ---------GLENWPSHIVYVAHGK  251 (348)
Q Consensus       236 ---------~~~~~~d~v~~l~~G~  251 (348)
                               .+..+||-++.++..+
T Consensus       209 ~~~~~~gG~~l~~~advrl~l~r~~  233 (356)
T 1u94_A          209 NPETTTGGNALKFYASVRLDIRRIG  233 (356)
T ss_dssp             ----CTTCSHHHHHCSEEEEEEEEE
T ss_pred             CCcccCCCcceeeeccEEEEEEEee
Confidence                     2456788888776544

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.18  E-value=4.6e-07  Score=76.81  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR  101 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~  101 (348)
                      .+|++++|+|+|||||||++++|++.+    |.+.+++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d   40 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGD   40 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCc
Confidence            468999999999999999999999853    66666553

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.14  E-value=3.9e-07  Score=91.61  Aligned_cols=41  Identities=24%  Similarity=0.359  Sum_probs=36.0

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEE-EcCe
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVK-VLGR  101 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~-i~G~  101 (348)
                      .+++|++++|+|+||||||||+++|+|.+.|+.| .+. ++|.
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD  407 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD  407 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence            5789999999999999999999999999888886 674 6664

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.12  E-value=2.6e-08  Score=94.48  Aligned_cols=64  Identities=27%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      +++.+++++.|+         ...+++++++.+.+|.+++|+|+||||||||++.|+|.+.+..+.+.+.+.+
T Consensus        30 ~ie~~~~~~~~~---------~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d   93 (341)
T 2p67_A           30 LVESRHPRHQAL---------STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD   93 (341)
T ss_dssp             HHHCCCHHHHHH---------HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HhhcCCchhhhH---------HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence            467778777773         3578899999999999999999999999999999999877777777765544

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.07  E-value=7e-06  Score=75.47  Aligned_cols=62  Identities=11%  Similarity=0.074  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHHccCCcEEEeeccCCCCCH----------HHHHHHHHHHHHHHHh---cCcEEEEEecChhh
Q 018938          175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDV----------LARADLLRFLRKECEE---RGATIIYATHIFDG  236 (348)
Q Consensus       175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~----------~~~~~l~~~l~~l~~~---~g~tviivtHd~~~  236 (348)
                      +++++.+..++.+...+|.+|++||+.+-++.          .....++..+......   .+..||.+|++.+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~  171 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE  171 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence            35677788888888899999999999876653          2223344444332111   24567888887653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.03  E-value=2.5e-06  Score=70.99  Aligned_cols=31  Identities=32%  Similarity=0.582  Sum_probs=25.4

Q ss_pred             eeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           56 NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        56 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.++++.+| +.+|+|||||||||++.+|.-
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            3455666666 999999999999999999863

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.02  E-value=1.6e-06  Score=73.03  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=23.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .|++++|+|||||||||++++|++.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999999864

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.01  E-value=1e-06  Score=84.26  Aligned_cols=52  Identities=25%  Similarity=0.313  Sum_probs=46.2

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceee--------------eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLIN--------------DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~--------------~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      -+.++||++.|+.        .+..|+              |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       133 ri~Fe~ltp~yP~--------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHAN--------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESCC--------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCCC--------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            3778999999973        467888              899999999999999999999999999998753

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.99  E-value=6e-05  Score=73.75  Aligned_cols=172  Identities=12%  Similarity=0.100  Sum_probs=93.7

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEE-cCeeccccccccccCcccccchhhhhhh-hh
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKV-LGRSAFHDTALTSSGDLSYLGGEWRREV-AF  128 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i-~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  128 (348)
                      .+.|+.+.--+++|+++.|.|++|+|||||+..++.......| .+.+ ..+.        .       ...+..++ ..
T Consensus       187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~--------~-------~~~l~~R~~~~  251 (444)
T 2q6t_A          187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM--------P-------AAQLTLRMMCS  251 (444)
T ss_dssp             CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS--------C-------HHHHHHHHHHH
T ss_pred             CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC--------C-------HHHHHHHHHHH
Confidence            4567777666999999999999999999999887753322222 2222 1110        0       00111110 00


Q ss_pred             ---cCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-Cc-CccCCCCCHHHHHHHHHHHHHc--cCCcEEEeeccC
Q 018938          129 ---AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-DL-SWRMHKVSDGQRRRVQICMGLL--KPFKVLLLDEIT  201 (348)
Q Consensus       129 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-~~-~~~~~~LSgGqrQRv~lAraL~--~~P~lLlLDEPt  201 (348)
                         .+........+...         +..+....+..+.- .. -.....+|..+-  .+.++.+.  .+|+++|+|..+
T Consensus       252 ~~~i~~~~l~~g~l~~~---------~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~  320 (444)
T 2q6t_A          252 EARIDMNRVRLGQLTDR---------DFSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQ  320 (444)
T ss_dssp             HTTCCTTTCCGGGCCHH---------HHHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGG
T ss_pred             HcCCCHHHHhCCCCCHH---------HHHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChh
Confidence               00000000001000         01122222222211 11 011245666654  44555554  589999999987


Q ss_pred             CCCCH----------HHHHHHHHHHHHHHHhcCcEEEEEecChh-------------------hhhhhCCEEEEEcC
Q 018938          202 VDLDV----------LARADLLRFLRKECEERGATIIYATHIFD-------------------GLENWPSHIVYVAH  249 (348)
Q Consensus       202 sgLD~----------~~~~~l~~~l~~l~~~~g~tviivtHd~~-------------------~~~~~~d~v~~l~~  249 (348)
                      .-...          .....+...|+.++++.+++||+++|--.                   .+++.||.|++|+.
T Consensus       321 ~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r  397 (444)
T 2q6t_A          321 LMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR  397 (444)
T ss_dssp             GCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred             hcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence            64432          12346778888888899999999999211                   35677898888853

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.98  E-value=2.1e-05  Score=73.41  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=27.5

Q ss_pred             ceeeeee-eEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           53 PLINDFT-LTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        53 ~~l~~vs-l~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +.|+.+- =-+++|+++.|.||+|+|||||+..++.
T Consensus        85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3444432 2578999999999999999999987764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.93  E-value=1.3e-05  Score=74.31  Aligned_cols=29  Identities=28%  Similarity=0.502  Sum_probs=26.0

Q ss_pred             eEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           60 LTLNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.+.++..+.|.||+|+|||||+++|++.
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence            45678899999999999999999999985

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.88  E-value=4.3e-06  Score=72.80  Aligned_cols=33  Identities=18%  Similarity=0.081  Sum_probs=28.2

Q ss_pred             eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++--++++|.+++|+|++||||||++++|++.+
T Consensus        13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            344467789999999999999999999999964

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.87  E-value=3.5e-06  Score=80.05  Aligned_cols=41  Identities=27%  Similarity=0.306  Sum_probs=35.0

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA  103 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~  103 (348)
                      +++.+++|+|++|||||||++.|+|.+.+..|.|.+.+.++
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp  112 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP  112 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence            35789999999999999999999998888888887766543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.86  E-value=3.6e-06  Score=71.60  Aligned_cols=29  Identities=31%  Similarity=0.352  Sum_probs=25.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCcC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKHMV   91 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~   91 (348)
                      .+|++++|+|++||||||++++|++.+.+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            36899999999999999999999986544

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.83  E-value=2.1e-06  Score=75.63  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.6

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +.+++|+|||||||||+.++|++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.80  E-value=6.9e-06  Score=73.24  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=28.9

Q ss_pred             ceeeeeeeEEe---CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE
Q 018938           53 PLINDFTLTLN---AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV   96 (348)
Q Consensus        53 ~~l~~vsl~i~---~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i   96 (348)
                      .-|.++||.+.   +|.+++|.|++||||||+++.|+..+.+ .+.+
T Consensus        11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~   56 (229)
T 4eaq_A           11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV   56 (229)
T ss_dssp             ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred             cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence            34677777776   8999999999999999999999987654 3343

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.79  E-value=1.1e-05  Score=70.65  Aligned_cols=30  Identities=33%  Similarity=0.592  Sum_probs=25.1

Q ss_pred             eeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +.++.+.+| +.+|+|||||||||++.+|.-
T Consensus        16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence            456666665 999999999999999998863

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.75  E-value=0.00026  Score=62.80  Aligned_cols=44  Identities=18%  Similarity=-0.001  Sum_probs=31.0

Q ss_pred             ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEec
Q 018938          189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATH  232 (348)
Q Consensus       189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-~g~tviivtH  232 (348)
                      ..+|+++|+..+.+.++......+..++..+... ...++|++||
T Consensus       110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK  154 (239)
T 3lxx_A          110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR  154 (239)
T ss_dssp             TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred             CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence            3578999999999999887666665555443221 1248888898

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.75  E-value=0.00021  Score=69.98  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=29.0

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus       184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            345666554689999999999999999999876654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.73  E-value=3e-06  Score=85.24  Aligned_cols=48  Identities=25%  Similarity=0.263  Sum_probs=40.6

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLG  100 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G  100 (348)
                      ..++.++++++ +|++++|+||||+|||||+++|++.+.+..|.+.+.|
T Consensus        96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A           96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            45778888888 8999999999999999999999998766666665555

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.69  E-value=0.00021  Score=68.17  Aligned_cols=27  Identities=26%  Similarity=0.323  Sum_probs=23.9

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -+++|+++.|.||.|+|||||...++-
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            478999999999999999999876653

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.67  E-value=4e-05  Score=73.21  Aligned_cols=32  Identities=22%  Similarity=0.443  Sum_probs=28.1

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      .+++..+++.+| +++|+|||||||||++.+|.
T Consensus        15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            347788888886 99999999999999999885

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.67  E-value=6e-06  Score=82.44  Aligned_cols=35  Identities=34%  Similarity=0.631  Sum_probs=31.3

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ..+++++|++.+| +.+|+|+||||||||+.+|.++
T Consensus        49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            3578899999999 9999999999999999999544

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.67  E-value=1.1e-05  Score=78.46  Aligned_cols=179  Identities=17%  Similarity=0.076  Sum_probs=97.4

Q ss_pred             EeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccccc
Q 018938           33 INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS  112 (348)
Q Consensus        33 v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~  112 (348)
                      .++|++.|++         ..  ++++|+  +|++++++|+|||||||++..|++.+.+..+.|.+.+.+.+......  
T Consensus        79 ~~~L~~~~~~---------~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~--  143 (425)
T 2ffh_A           79 YEALKEALGG---------EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE--  143 (425)
T ss_dssp             HHHHHHHTTS---------SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHH--
T ss_pred             HHHHHHHhCC---------Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHH--
Confidence            3567777842         22  678888  89999999999999999999999998888788887665432211000  


Q ss_pred             CcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHH-HHHHHHc---CCC---cCccC--CCCCHHHHHHHH
Q 018938          113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR-AELIKVL---DID---LSWRM--HKVSDGQRRRVQ  183 (348)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l---~l~---~~~~~--~~LSgGqrQRv~  183 (348)
                       .+    ..+....++     +.+..         ....+...+ .+.++.+   +.+   .+..+  +.-+.-+.+...
T Consensus       144 -qL----~~~~~~~gv-----~v~~~---------~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~  204 (425)
T 2ffh_A          144 -QL----RLLGEKVGV-----PVLEV---------MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR  204 (425)
T ss_dssp             -HH----HHHHHHHTC-----CEEEC---------CTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHH
T ss_pred             -HH----HHhcccCCc-----cEEec---------CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHH
Confidence             00    011111111     00000         000111111 2223222   111   12221  112345777788


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh---------hhhhhCCEEEEEcCCEE
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD---------GLENWPSHIVYVAHGKL  252 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~---------~~~~~~d~v~~l~~G~i  252 (348)
                      +++++..++-+|++| ++++.|..      +.++.+....+.+-|+.|+--.         ......-.|.++..|+-
T Consensus       205 i~~~~~pd~vlLVvD-a~tgq~av------~~a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~  275 (425)
T 2ffh_A          205 LKEVLGPDEVLLVLD-AMTGQEAL------SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEK  275 (425)
T ss_dssp             HHHHHCCSEEEEEEE-GGGTTHHH------HHHHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSS
T ss_pred             hhhccCCceEEEEEe-ccchHHHH------HHHHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCC
Confidence            888887777788888 56665543      2334444345667777776321         12233455667766654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.65  E-value=2.1e-05  Score=67.35  Aligned_cols=31  Identities=26%  Similarity=0.457  Sum_probs=25.8

Q ss_pred             eeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++||+..+|.+++|+|++||||||+.+.|+-
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            5788889999999999999999999999986

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.65  E-value=6.8e-06  Score=71.97  Aligned_cols=41  Identities=20%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc--eEEEcC
Q 018938           60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE--MVKVLG  100 (348)
Q Consensus        60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G--~i~i~G  100 (348)
                      +.+++|.+++|+|++||||||+.+.|++.+.|..|  .+.++|
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~   62 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG   62 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence            55678999999999999999999999987655555  454543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.61  E-value=1.2e-05  Score=69.52  Aligned_cols=36  Identities=25%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -..+++++||..+++ .++|+|++|+|||||++.+.+
T Consensus        12 ~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           12 FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             -CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            356899999998888 578999999999999999987

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.58  E-value=0.00011  Score=63.36  Aligned_cols=23  Identities=39%  Similarity=0.501  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ..+.|.||+|+|||||++.|+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            68899999999999999999874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.58  E-value=1.4e-05  Score=79.37  Aligned_cols=48  Identities=23%  Similarity=0.461  Sum_probs=40.5

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA  103 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~  103 (348)
                      ..+++++++.+++|  +.|+||||+|||||+++|+|..  ..+.+.++|..+
T Consensus        53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~--~~~~i~i~g~~~  100 (499)
T 2dhr_A           53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA--RVPFITASGSDF  100 (499)
T ss_dssp             GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT--TCCEEEEEGGGG
T ss_pred             hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh--CCCEEEEehhHH
Confidence            45788999999999  8999999999999999999965  367777877543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.57  E-value=0.00012  Score=68.09  Aligned_cols=42  Identities=19%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             cCCcEEEeeccCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 018938          190 KPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYATH  232 (348)
Q Consensus       190 ~~P~lLlLDEPts-gLD~~~~~~l~~~l~~l~~~~g~tviivtH  232 (348)
                      .+|++|++||+-. .-+...+..++.++..+.. .+..+|++|+
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~  139 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASD  139 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence            4699999999865 2344778888888887754 4666666665

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.56  E-value=1e-05  Score=75.17  Aligned_cols=58  Identities=21%  Similarity=0.155  Sum_probs=45.0

Q ss_pred             EeceEEEecCCCCCCCCCCCceeee-eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938           33 INALKFTYPGIDGHPPPGSTPLIND-FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS  102 (348)
Q Consensus        33 v~~ls~~y~~~~~~~~~g~~~~l~~-vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~  102 (348)
                      .++|++.|++         ..  ++ ++|+.+ |++++++|+||+||||++..|++.+.+..+.+.+.+.+
T Consensus        77 ~~~l~~~~~~---------~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F           77 YDELSNLFGG---------DK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             HHHHHHHTTC---------SC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             HHHHHHHhcc---------cc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            4566677742         11  56 888876 99999999999999999999999887777777765543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.56  E-value=5.9e-06  Score=78.82  Aligned_cols=50  Identities=22%  Similarity=0.333  Sum_probs=36.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE   94 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G   94 (348)
                      .+.+.||++.|+         .+.++++++|.|      +|+|+||+|||||++.|.|...+..+
T Consensus        17 ~v~~~~l~~~~~---------~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~   66 (361)
T 2qag_A           17 YVGFANLPNQVH---------RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER   66 (361)
T ss_dssp             ----CCHHHHHH---------THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred             eEEeccchHHhC---------CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            588899998884         456889999887      99999999999999999886544433

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.56  E-value=3.1e-05  Score=67.28  Aligned_cols=29  Identities=21%  Similarity=0.350  Sum_probs=25.2

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ...+|.+++|+||+|||||||.+.|+..+
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45689999999999999999999998754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.55  E-value=2.7e-05  Score=67.35  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +++|+|+|||||||+.++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999998

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.53  E-value=0.00042  Score=64.62  Aligned_cols=59  Identities=10%  Similarity=0.150  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHH--c--cCCcEEEeeccCCCCC-H--------------HHHHHHHHHH---HHHHHhcCcEEEEEecCh
Q 018938          177 GQRRRVQICMGL--L--KPFKVLLLDEITVDLD-V--------------LARADLLRFL---RKECEERGATIIYATHIF  234 (348)
Q Consensus       177 GqrQRv~lAraL--~--~~P~lLlLDEPtsgLD-~--------------~~~~~l~~~l---~~l~~~~g~tviivtHd~  234 (348)
                      ++++.+.++.++  +  .+|++++.|=-++-.- .              ...+.+-+.|   ..++++.+.+||++-|-.
T Consensus        93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~  172 (333)
T 3io5_A           93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY  172 (333)
T ss_dssp             HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred             HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence            455556666665  3  4799999997655431 0              1222333444   345678899999999986


Q ss_pred             h
Q 018938          235 D  235 (348)
Q Consensus       235 ~  235 (348)
                      .
T Consensus       173 k  173 (333)
T 3io5_A          173 E  173 (333)
T ss_dssp             -
T ss_pred             e
Confidence            5

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.51  E-value=2.2e-05  Score=67.04  Aligned_cols=36  Identities=31%  Similarity=0.291  Sum_probs=28.8

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV   96 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i   96 (348)
                      ...+|.+++|+|++||||||+.+.|+..+.+..+.+
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~   44 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV   44 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            335789999999999999999999998765444443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.50  E-value=7.8e-05  Score=72.76  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=28.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCc------------CCCceEEEcCee
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHM------------VEPEMVKVLGRS  102 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~------------~~~G~i~i~G~~  102 (348)
                      .++|+|+||||||||++.|+|...            +..|.+.++|..
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~  229 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK  229 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence            799999999999999999999753            445667777653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.48  E-value=5.2e-05  Score=64.86  Aligned_cols=34  Identities=29%  Similarity=0.534  Sum_probs=20.6

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+++++++..++. .++|+|++|+|||||++.+++
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            4789999998887 779999999999999999987

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.46  E-value=5.1e-05  Score=63.88  Aligned_cols=26  Identities=27%  Similarity=0.655  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +|..++|+|++|+|||||++.++|..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999853

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.43  E-value=0.00067  Score=67.22  Aligned_cols=69  Identities=14%  Similarity=0.164  Sum_probs=46.7

Q ss_pred             HHHHHHHHHc--cCCcEEEeeccCCCCC--------HHHHHHHHHHHHHHHHhcCcEEEEEecChh--------------
Q 018938          180 RRVQICMGLL--KPFKVLLLDEITVDLD--------VLARADLLRFLRKECEERGATIIYATHIFD--------------  235 (348)
Q Consensus       180 QRv~lAraL~--~~P~lLlLDEPtsgLD--------~~~~~~l~~~l~~l~~~~g~tviivtHd~~--------------  235 (348)
                      +-+..++.++  .+|+++|+| +...+.        ......+...|+.++++.+++||+++|--.              
T Consensus       341 ~i~~~i~~~~~~~~~~lvVID-~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~  419 (503)
T 1q57_A          341 RLLAKLAYMRSGLGCDVIILD-HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS  419 (503)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEE-CTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred             HHHHHHHHHHHhcCCCEEEEc-cchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence            3344445443  579999999 444432        123346777888888899999999999542              


Q ss_pred             --------hhhhhCCEEEEEcC
Q 018938          236 --------GLENWPSHIVYVAH  249 (348)
Q Consensus       236 --------~~~~~~d~v~~l~~  249 (348)
                              .+++.||-|+.|+.
T Consensus       420 l~dlr~s~~ie~~aD~vi~l~r  441 (503)
T 1q57_A          420 ITDLRGSGALRQLSDTIIALER  441 (503)
T ss_dssp             SSSCSSSSHHHHHCSEEEEEEE
T ss_pred             hhhhccchHhhecCcEEEEEEe
Confidence                    24466888888853

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.40  E-value=0.00022  Score=64.78  Aligned_cols=55  Identities=24%  Similarity=0.198  Sum_probs=35.9

Q ss_pred             HHHHHccCCcEEEeeccCCC----------CCHHHHHHHHHHHHHHH---HhcCcEEEEEecChhhhh
Q 018938          184 ICMGLLKPFKVLLLDEITVD----------LDVLARADLLRFLRKEC---EERGATIIYATHIFDGLE  238 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsg----------LD~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~  238 (348)
                      +..+....|.+|++||--.-          -+......+..++..+.   ...+..||.+|+..+.+.
T Consensus       103 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~  170 (285)
T 3h4m_A          103 FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD  170 (285)
T ss_dssp             HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred             HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence            33444567899999997432          25666777777777652   123567888888765543

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.39  E-value=0.00074  Score=75.50  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=25.6

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      -+++|+++.|.||+|+|||||+..++..
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~  755 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAA  755 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence            3899999999999999999999988764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.36  E-value=8.2e-05  Score=71.60  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CcCCCceEEEcC
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGK-----------HMVEPEMVKVLG  100 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl-----------~~~~~G~i~i~G  100 (348)
                      .+..|..++|+|+||+|||||++.|+|.           ..|..|.+.+.+
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            4467888999999999999999999997           345556655544

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.34  E-value=0.00014  Score=60.47  Aligned_cols=23  Identities=30%  Similarity=0.621  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|++|+|||||++.++|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999964

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.34  E-value=2e-05  Score=74.68  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=33.4

Q ss_pred             ceeeeeeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCC
Q 018938           53 PLINDFTLTLNAGDR--CLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.+
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            477888999999999  9999999999999999999853

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.32  E-value=0.00014  Score=61.47  Aligned_cols=22  Identities=32%  Similarity=0.631  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|++|+|||||++.++|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.31  E-value=2e-05  Score=74.17  Aligned_cols=44  Identities=18%  Similarity=0.279  Sum_probs=38.0

Q ss_pred             CCceeeeeeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCCcCCCc
Q 018938           51 STPLINDFTLTLNAGDR--CLLVGSNGAGKTTILKIIGGKHMVEPE   94 (348)
Q Consensus        51 ~~~~l~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~Gl~~~~~G   94 (348)
                      ...+++.++..++.|++  +.|.||+|+||||+++++++.+.+..+
T Consensus        30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   75 (340)
T 1sxj_C           30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY   75 (340)
T ss_dssp             CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred             cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence            45688999999999999  999999999999999999997654443

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.29  E-value=9.8e-05  Score=62.66  Aligned_cols=25  Identities=28%  Similarity=0.521  Sum_probs=22.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999984

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.28  E-value=0.00085  Score=59.25  Aligned_cols=61  Identities=21%  Similarity=0.072  Sum_probs=43.6

Q ss_pred             HccCCcEEEeeccCC----CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh----------hhhhhCCEEEEEc
Q 018938          188 LLKPFKVLLLDEITV----DLDVLARADLLRFLRKECEERGATIIYATHIFD----------GLENWPSHIVYVA  248 (348)
Q Consensus       188 L~~~P~lLlLDEPts----gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~----------~~~~~~d~v~~l~  248 (348)
                      -..+|+++++|--+.    .-|......+...|+.++++.++++++++|-..          .++.+||-|+.|+
T Consensus       132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~  206 (251)
T 2zts_A          132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD  206 (251)
T ss_dssp             HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred             HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence            346899999995431    114555667788888888899999999998532          2356788888775

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.26  E-value=0.00016  Score=68.09  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=22.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ..+..+.|.||.|+|||||++.++..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.00012  Score=63.21  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ..+++|+|++||||||+.+.|++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999874

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.25  E-value=0.00016  Score=61.24  Aligned_cols=23  Identities=35%  Similarity=0.667  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|++|+|||||++.++|..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999964

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.25  E-value=0.00013  Score=64.86  Aligned_cols=25  Identities=28%  Similarity=0.349  Sum_probs=23.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+|.+++|+|++||||||+.++|++
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999999986

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.14  E-value=0.00022  Score=59.35  Aligned_cols=22  Identities=18%  Similarity=0.214  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+|++||||||+.+.|+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.14  E-value=9.4e-05  Score=66.12  Aligned_cols=24  Identities=17%  Similarity=0.291  Sum_probs=21.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ..-+++|.||+||||||+.+.|+.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999984

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.11  E-value=0.00017  Score=61.56  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=22.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKHMV   91 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~~~   91 (348)
                      .+++|+|++|||||||++.|++.+..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            58999999999999999999986543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.11  E-value=0.00013  Score=65.55  Aligned_cols=34  Identities=32%  Similarity=0.537  Sum_probs=24.0

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++++++.++.|  +.|+||+|+|||||+++|++..
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence            345555555555  8899999999999999999853

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.11  E-value=0.00029  Score=59.27  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=21.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      |.++.|+|++||||||+.+.|+-.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999999864

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.06  E-value=0.0046  Score=60.21  Aligned_cols=27  Identities=30%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCc
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKHM   90 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~   90 (348)
                      ++.+++++|++|+||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999986544

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.04  E-value=0.00029  Score=67.51  Aligned_cols=48  Identities=19%  Similarity=0.108  Sum_probs=39.7

Q ss_pred             cCCcEEEeeccCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938          190 KPFKVLLLDEITVDLD---VLARADLLRFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD---~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                      ..|.++++||-=.-++   +.....+.+++++. +++|..++++||.+..+.
T Consensus       261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~-Rk~g~~~~~~tQ~~~d~~  311 (392)
T 4ag6_A          261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI-RKYNGSLIVISQNVIDFL  311 (392)
T ss_dssp             CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHG-GGGTCEEEEEESCGGGGG
T ss_pred             CccEEEEEecHHHHhCcCchHHHHHHHHHHHHh-hhhCeEEEEEcCCHHHhh
Confidence            3689999999988884   66777788888775 567999999999998764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.03  E-value=0.0002  Score=64.44  Aligned_cols=39  Identities=33%  Similarity=0.363  Sum_probs=29.9

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR  101 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~  101 (348)
                      ....+.++.|+|++||||||+.+.|+..+.  .+.+.+++.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D   66 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGD   66 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecH
Confidence            456778999999999999999999987542  344555553

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.02  E-value=0.00037  Score=59.06  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      |.+++|.|++||||||+.+.|+-
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999999975

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.98  E-value=0.0064  Score=68.13  Aligned_cols=35  Identities=23%  Similarity=0.239  Sum_probs=28.0

Q ss_pred             CceeeeeeeE---EeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           52 TPLINDFTLT---LNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        52 ~~~l~~vsl~---i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ...|+.+ +.   +++|.++.|.||+|+|||||.-.++.
T Consensus       368 i~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~  405 (1706)
T 3cmw_A          368 SLSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIA  405 (1706)
T ss_dssp             CHHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cHHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            3456655 33   88999999999999999999877654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.97  E-value=0.00039  Score=57.69  Aligned_cols=19  Identities=32%  Similarity=0.623  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHH
Q 018938           67 RCLLVGSNGAGKTTILKII   85 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i   85 (348)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999999

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.96  E-value=0.00057  Score=60.58  Aligned_cols=53  Identities=19%  Similarity=0.189  Sum_probs=38.5

Q ss_pred             cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh----------hhhhhhCCEEEEEc
Q 018938          190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF----------DGLENWPSHIVYVA  248 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~----------~~~~~~~d~v~~l~  248 (348)
                      .+|+++++||--. |+..    +.+.+..++. .|.+||++-|+.          ..+..+||+|..|+
T Consensus        88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           88 DETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TTCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            3589999999964 6653    4455566554 489999999943          34456899999875

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.94  E-value=0.0004  Score=60.63  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=21.2

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +-+++|+|++||||||+.+.|+.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999986

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.94  E-value=0.00033  Score=59.52  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=22.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ..+.++.|+|++||||||+.+.|+-
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999974

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.90  E-value=0.00028  Score=59.61  Aligned_cols=25  Identities=36%  Similarity=0.401  Sum_probs=22.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ..+.++.|+|++||||||+.+.|+-
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4577899999999999999999983

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.89  E-value=0.00049  Score=58.91  Aligned_cols=22  Identities=41%  Similarity=0.566  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.88  E-value=0.00056  Score=58.73  Aligned_cols=26  Identities=27%  Similarity=0.204  Sum_probs=23.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +|-+++|+|+.||||||+.+.|+-.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999998753

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.88  E-value=0.00043  Score=58.26  Aligned_cols=22  Identities=23%  Similarity=0.537  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+|++||||||+.+.|+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999999863

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.87  E-value=0.0005  Score=59.23  Aligned_cols=20  Identities=35%  Similarity=0.624  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      +.|+||||||||||++.|.-
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.86  E-value=0.00061  Score=57.64  Aligned_cols=24  Identities=29%  Similarity=0.360  Sum_probs=21.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.++.|+|++||||||+.+.|+-
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999999974

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.85  E-value=0.0021  Score=60.74  Aligned_cols=26  Identities=38%  Similarity=0.488  Sum_probs=22.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+...+.|.||.|+|||||++.|+..
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.84  E-value=0.00056  Score=61.64  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+||||||||||.+.|++.
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            6899999999999999999863

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.83  E-value=0.01  Score=67.33  Aligned_cols=70  Identities=17%  Similarity=0.224  Sum_probs=45.9

Q ss_pred             HHHHHHHHc--cCCcEEEeeccCCCCC-HH------------HHHHHHHHHHHH---HHhcCcEEEEEecChhh------
Q 018938          181 RVQICMGLL--KPFKVLLLDEITVDLD-VL------------ARADLLRFLRKE---CEERGATIIYATHIFDG------  236 (348)
Q Consensus       181 Rv~lAraL~--~~P~lLlLDEPtsgLD-~~------------~~~~l~~~l~~l---~~~~g~tviivtHd~~~------  236 (348)
                      -+.+++.++  .+|+++++|.-++-.. .+            ..+.+.+.|+.+   +++.+++||+++|-...      
T Consensus       449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g  528 (2050)
T 3cmu_A          449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG  528 (2050)
T ss_dssp             HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred             HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence            445566554  5899999998876552 11            123344555554   67889999999985432      


Q ss_pred             ----------hhhhCCEEEEEcCC
Q 018938          237 ----------LENWPSHIVYVAHG  250 (348)
Q Consensus       237 ----------~~~~~d~v~~l~~G  250 (348)
                                ++.+||.++.|+..
T Consensus       529 ~p~~psGg~ale~~ADv~l~L~R~  552 (2050)
T 3cmu_A          529 NPETTTGGNALKFYASVRLDIRRI  552 (2050)
T ss_dssp             CCEECSSHHHHHHHEEEEEEEEEE
T ss_pred             CCcCCCCcchhhhhCCEEEEEEec
Confidence                      56678888887643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.82  E-value=0.00062  Score=57.03  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=20.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++.|+|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3689999999999999999985

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.81  E-value=0.0031  Score=58.83  Aligned_cols=28  Identities=21%  Similarity=0.376  Sum_probs=25.0

Q ss_pred             eEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           60 LTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        60 l~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      --+++|.++.|.||.|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4688899999999999999999998874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.78  E-value=0.0007  Score=58.51  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.1

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ..+|-+++|+|+.||||||+.+.|+-
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999999974

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.77  E-value=0.00062  Score=61.74  Aligned_cols=48  Identities=17%  Similarity=0.019  Sum_probs=40.0

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938          200 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV  247 (348)
Q Consensus       200 PtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l  247 (348)
                      |||+++..+...+++.+.+.......+..+.+|..+.++..++++...
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~  191 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISEL  191 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999887665666677889989898888876544

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.76  E-value=0.0027  Score=62.54  Aligned_cols=71  Identities=15%  Similarity=0.273  Sum_probs=56.3

Q ss_pred             CCCCCHHHHHHHHHHHHHc--c---------------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938          171 MHKVSDGQRRRVQICMGLL--K---------------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI  233 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~--~---------------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd  233 (348)
                      ...+||||+|-..+|.+.+  .               .-.+++|||. +-+|.+.....++++++    .|.-+|++|=+
T Consensus       377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~----lglQliiatP~  451 (483)
T 3euj_A          377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCER----LDMQLLIAAPE  451 (483)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHH----TTCEEEEEESS
T ss_pred             cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHH----cCCEEEEECcc
Confidence            4579999999765554432  2               2358999999 99999999999999875    48899999988


Q ss_pred             hhhhhhhCCEEEEEc
Q 018938          234 FDGLENWPSHIVYVA  248 (348)
Q Consensus       234 ~~~~~~~~d~v~~l~  248 (348)
                        .+..++|.++.+-
T Consensus       452 --~i~p~v~~~~~~~  464 (483)
T 3euj_A          452 --NISPERGTTYKLV  464 (483)
T ss_dssp             --SCCCSSSEEEECC
T ss_pred             --hhhhccCceEEEE
Confidence              6777888888764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.75  E-value=0.00033  Score=60.70  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCc
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHM   90 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~   90 (348)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999987543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.74  E-value=0.00078  Score=58.15  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+|-+++|+|+.||||||+.+.|+-
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            4678999999999999999999974

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.74  E-value=0.00069  Score=58.02  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+++|+|++||||||+.+.|+.
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999987

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.73  E-value=0.0008  Score=57.25  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=22.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++.+++|+|+.||||||+.+.|+-
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3577999999999999999999974

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.73  E-value=0.001  Score=63.19  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC-----------CcCCCceEEEcC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGK-----------HMVEPEMVKVLG  100 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl-----------~~~~~G~i~i~G  100 (348)
                      |-.++|+|.+|+|||||++.|+|-           +.|..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            457899999999999999999982           345556666654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.71  E-value=0.00079  Score=57.94  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=22.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +|.+++|.|+.||||||+.+.|+-.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999763

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.71  E-value=0.00067  Score=62.34  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=26.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLG  100 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G  100 (348)
                      .|.++.|+||+||||||+.+.|+..+  ..+.+.+++
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~--~~~~~~Is~   66 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET--QGNVIVIDN   66 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT--TTCCEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh--CCCeEEEec
Confidence            46789999999999999999997532  124455543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.67  E-value=0.00086  Score=56.83  Aligned_cols=23  Identities=30%  Similarity=0.263  Sum_probs=20.6

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +.+++|+|++||||||+.+.|+-
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999864

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.65  E-value=0.0033  Score=62.17  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=22.8

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.+..-+.|.||+|+|||+|.+.|+..
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~  261 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANE  261 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence            345566899999999999999999863

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.63  E-value=0.00093  Score=56.51  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++.|.|+.||||||+.+.|+-.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999763

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.62  E-value=0.00075  Score=56.85  Aligned_cols=24  Identities=21%  Similarity=0.237  Sum_probs=17.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++.++.|+|++||||||+.+.|+-
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999974

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.59  E-value=0.00038  Score=59.47  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +..+-+++|+|+.||||||+.+.|+-
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            44677999999999999999999975

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.59  E-value=0.0011  Score=56.93  Aligned_cols=22  Identities=14%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|.|++||||||+.+.|+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            8999999999999999999873

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.58  E-value=0.00078  Score=59.67  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=22.7

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      .+..|+.++++||+||||||++.++.
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            45679999999999999999988765

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.56  E-value=0.0013  Score=55.79  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCCc
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKHM   90 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~~   90 (348)
                      .+++|+|++|||||||+..|+..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            3789999999999999999987543

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.51  E-value=0.0015  Score=56.97  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=21.7

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +|-+++|+|+.||||||+.+.|+-
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999975

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.50  E-value=0.003  Score=53.44  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|++|+|||||++.+++
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999976554

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.50  E-value=0.0014  Score=59.74  Aligned_cols=23  Identities=30%  Similarity=0.679  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|++|||||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999953

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.48  E-value=0.0014  Score=57.51  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++.+++|+|+.||||||+.+.|+-
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999984

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.46  E-value=0.003  Score=54.46  Aligned_cols=52  Identities=19%  Similarity=0.264  Sum_probs=38.4

Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh----------hhhhhhCCEEEEEc
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF----------DGLENWPSHIVYVA  248 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~----------~~~~~~~d~v~~l~  248 (348)
                      +.+++++||--- +|+.    +++.++++... |+.||+..+|.          ..+..+||.|.-|+
T Consensus        81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~  142 (191)
T 1xx6_A           81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  142 (191)
T ss_dssp             TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence            579999999644 7764    35566666544 89999999876          44567899998775

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.45  E-value=0.0015  Score=56.69  Aligned_cols=21  Identities=38%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +++|+|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999964

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.0013  Score=55.61  Aligned_cols=23  Identities=22%  Similarity=0.544  Sum_probs=21.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      =.++|+|+.|||||||++.+++.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999985

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.42  E-value=0.0016  Score=55.09  Aligned_cols=21  Identities=33%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +++|+|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999975

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.42  E-value=0.0015  Score=55.06  Aligned_cols=22  Identities=50%  Similarity=0.768  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|++|+|||||++.+++-
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999984

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.42  E-value=0.002  Score=55.41  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=21.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+-+++|+|+.||||||+.+.|+-
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.42  E-value=0.00021  Score=63.42  Aligned_cols=44  Identities=11%  Similarity=0.107  Sum_probs=28.1

Q ss_pred             HccCCcEEEeeccCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 018938          188 LLKPFKVLLLDEITVD-LDVLARADLLRFLRKECEERGATIIYATH  232 (348)
Q Consensus       188 L~~~P~lLlLDEPtsg-LD~~~~~~l~~~l~~l~~~~g~tviivtH  232 (348)
                      +...|+++|+|||-.- .+.......++.+.... +.|..|+.++|
T Consensus        81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sgidVitT~N  125 (228)
T 2r8r_A           81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAGIDVYTTVN  125 (228)
T ss_dssp             HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTTCEEEEEEE
T ss_pred             HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCCCCEEEEcc
Confidence            4468999999997632 34322233444444443 45889999988

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.41  E-value=0.0015  Score=53.46  Aligned_cols=22  Identities=41%  Similarity=0.889  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.++|.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            4789999999999999999885

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.41  E-value=0.0014  Score=54.53  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+++|+|+.||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999975

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.39  E-value=0.0018  Score=53.62  Aligned_cols=21  Identities=29%  Similarity=0.461  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +++|+|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999975

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.38  E-value=0.002  Score=53.20  Aligned_cols=22  Identities=41%  Similarity=0.830  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.|-
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            4789999999999999999984

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.36  E-value=0.0018  Score=56.22  Aligned_cols=21  Identities=38%  Similarity=0.357  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999964

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.36  E-value=0.0021  Score=52.77  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.34  E-value=0.0018  Score=54.73  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+++|+|+.||||||+.+.|+-
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.33  E-value=0.0021  Score=52.76  Aligned_cols=22  Identities=41%  Similarity=0.804  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++.
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999999874

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.33  E-value=0.0016  Score=56.93  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=21.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.++.|+|++||||||+.+.|+-
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999999974

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.32  E-value=0.0017  Score=54.85  Aligned_cols=22  Identities=36%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -+++|+|+.||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.32  E-value=0.0021  Score=53.34  Aligned_cols=22  Identities=27%  Similarity=0.656  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.32  E-value=0.0023  Score=53.26  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=20.4

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++++|+|+.||||||+.+.|+-
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999974

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.30  E-value=0.0018  Score=53.08  Aligned_cols=22  Identities=18%  Similarity=0.449  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.29  E-value=0.0021  Score=55.15  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=20.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ..+++|+|+.||||||+.+.|+-
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999974

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.29  E-value=0.0021  Score=55.42  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -+++|+|+.||||||+.+.|+-
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.29  E-value=0.002  Score=58.05  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=21.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++.++.|+|++||||||+.+.|+-
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.29  E-value=0.026  Score=64.12  Aligned_cols=36  Identities=19%  Similarity=0.139  Sum_probs=29.1

Q ss_pred             eeeeeee--EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           54 LINDFTL--TLNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        54 ~l~~vsl--~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      -|+.+-=  -+++|+++.|.|++|+|||||+..++...
T Consensus       719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~  756 (2050)
T 3cmu_A          719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA  756 (2050)
T ss_dssp             HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3555442  58899999999999999999999887643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.28  E-value=0.0028  Score=52.54  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.27  E-value=0.0019  Score=52.52  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.26  E-value=0.0013  Score=60.19  Aligned_cols=43  Identities=21%  Similarity=0.341  Sum_probs=31.6

Q ss_pred             CceeeeeeeEEeCC-----------CEEEEECCCCCcHHHHHHHHhCCCcCCCc
Q 018938           52 TPLINDFTLTLNAG-----------DRCLLVGSNGAGKTTILKIIGGKHMVEPE   94 (348)
Q Consensus        52 ~~~l~~vsl~i~~G-----------e~~~liG~NGsGKSTLlk~i~Gl~~~~~G   94 (348)
                      ..+++.+...+..+           ..+.|+||+|+||||++++|++.+....+
T Consensus        23 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~   76 (311)
T 4fcw_A           23 DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE   76 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence            34555555555543           58999999999999999999986544433

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.26  E-value=0.002  Score=54.42  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999984

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.24  E-value=0.0018  Score=52.65  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.24  E-value=0.0023  Score=57.32  Aligned_cols=22  Identities=18%  Similarity=0.143  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -+++|.|+.||||||+.+.|+-
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999975

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.24  E-value=0.0021  Score=54.09  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.|-
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999985

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.22  E-value=0.0016  Score=54.45  Aligned_cols=22  Identities=50%  Similarity=0.599  Sum_probs=20.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      =.++|+|++|+|||||++.+.+
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999985

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.22  E-value=0.0021  Score=52.35  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999998753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.20  E-value=0.0022  Score=52.34  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.19  E-value=0.0022  Score=52.58  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.19  E-value=0.0022  Score=52.64  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.19  E-value=0.0029  Score=55.14  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=22.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+..+.|.||+|+|||||++.++..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.18  E-value=0.0023  Score=53.15  Aligned_cols=22  Identities=23%  Similarity=0.596  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|||||||++.+.+-
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999998874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.16  E-value=0.0024  Score=53.53  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999999985

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.16  E-value=0.0027  Score=55.72  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +++|+|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999974

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.15  E-value=0.0023  Score=52.32  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.14  E-value=0.0024  Score=52.16  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999863

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.13  E-value=0.0077  Score=58.44  Aligned_cols=27  Identities=30%  Similarity=0.561  Sum_probs=22.4

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++-.=+.|.||.|+|||+|.++|++.
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            344445889999999999999999974

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.13  E-value=0.0024  Score=52.84  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.13  E-value=0.0028  Score=58.55  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+|.+|+|||||++.++|.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999985

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.13  E-value=0.0066  Score=58.34  Aligned_cols=55  Identities=24%  Similarity=0.278  Sum_probs=34.7

Q ss_pred             HHHHHccCCcEEEeeccCCCC----------CHHHHHHHHHHHHHHH---HhcCcEEEEEecChhhhh
Q 018938          184 ICMGLLKPFKVLLLDEITVDL----------DVLARADLLRFLRKEC---EERGATIIYATHIFDGLE  238 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgL----------D~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~  238 (348)
                      +..|-...|.||++||--+-.          |......+.++|.++-   ...+..||.+|..++.+.
T Consensus       234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD  301 (405)
T 4b4t_J          234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD  301 (405)
T ss_dssp             HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred             HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence            334445679999999964322          3445555666666552   233567889998877653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.12  E-value=0.0022  Score=52.56  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.12  E-value=0.0015  Score=60.17  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=18.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++-+++|.|++||||||+.+.|+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999976

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.011  Score=57.60  Aligned_cols=57  Identities=19%  Similarity=0.195  Sum_probs=36.5

Q ss_pred             HHHHHHHccCCcEEEeeccCC----------CCCHHHHHHHHHHHHHHH---HhcCcEEEEEecChhhhh
Q 018938          182 VQICMGLLKPFKVLLLDEITV----------DLDVLARADLLRFLRKEC---EERGATIIYATHIFDGLE  238 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPts----------gLD~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~  238 (348)
                      -.+..|-...|-||++||--+          +-|......+..+|..+-   ...+.-||.+|..++.+.
T Consensus       265 ~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD  334 (437)
T 4b4t_L          265 EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD  334 (437)
T ss_dssp             HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred             HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence            334555667899999999743          234445555566666552   223567899999887654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.10  E-value=0.0029  Score=56.48  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++-+++|+||.||||||+.+.|+-
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.09  E-value=0.0027  Score=58.03  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHh
Q 018938           66 DRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~   86 (348)
                      -+++|+|+.||||||+.+.|+
T Consensus        76 ~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.09  E-value=0.0024  Score=52.96  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999874

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.08  E-value=0.0029  Score=57.03  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|||||||++.++|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999995

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.04  E-value=0.0028  Score=54.18  Aligned_cols=22  Identities=41%  Similarity=0.804  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|++|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5799999999999999999874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.04  E-value=0.0033  Score=52.04  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4789999999999999999873

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.03  E-value=0.0029  Score=53.53  Aligned_cols=22  Identities=32%  Similarity=0.652  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.03  E-value=0.0029  Score=52.89  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.03  E-value=0.0029  Score=51.74  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+++
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999999986

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.03  E-value=0.0029  Score=53.35  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999885

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.03  E-value=0.0029  Score=51.96  Aligned_cols=21  Identities=52%  Similarity=0.710  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+.+
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999976

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.02  E-value=0.0034  Score=58.10  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +| +++|+|+.|+|||||++.|.|.
T Consensus        10 ~g-~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           10 VG-YVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred             CC-EEEEECCCCCcHHHHHHHHhCC
Confidence            44 8999999999999999999985

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.01  E-value=0.0031  Score=55.98  Aligned_cols=27  Identities=33%  Similarity=0.465  Sum_probs=20.7

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ..+|-++.|.|+.||||||+.+.|+-.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~   48 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDR   48 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999999754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.01  E-value=0.0031  Score=57.21  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|++|+|||||++.|.|.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999874

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.00  E-value=0.003  Score=52.95  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999863

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.99  E-value=0.015  Score=60.70  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=22.5

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.+-.-+.|.||.|+|||||.|.|++.
T Consensus       235 ~~~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            334455889999999999999999984

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.99  E-value=0.003  Score=53.13  Aligned_cols=23  Identities=39%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|+.|+|||||++.+.|..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            47899999999999999999853

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.98  E-value=0.0034  Score=56.13  Aligned_cols=22  Identities=41%  Similarity=0.542  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|||||||++.|+|.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.98  E-value=0.0026  Score=60.56  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|++|+|||||++.|+|.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999874

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.97  E-value=0.0051  Score=57.17  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=30.2

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ...+++..+.+ .|.-++|+|+||+|||||...+.+
T Consensus       132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            35678888888 788899999999999999998876

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.96  E-value=0.0033  Score=51.35  Aligned_cols=21  Identities=52%  Similarity=0.624  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999999976

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.96  E-value=0.0038  Score=54.42  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +|-+++|+|+.||||||+.+.|+-
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999975

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.96  E-value=0.0035  Score=54.47  Aligned_cols=21  Identities=38%  Similarity=0.452  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.||||||+.+.|+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.96  E-value=0.0041  Score=52.10  Aligned_cols=23  Identities=52%  Similarity=0.730  Sum_probs=20.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.95  E-value=0.0033  Score=52.94  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999999874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.93  E-value=0.0034  Score=51.87  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.93  E-value=0.0034  Score=52.29  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=95.92  E-value=0.0031  Score=52.12  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999863

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.92  E-value=0.0042  Score=55.97  Aligned_cols=23  Identities=26%  Similarity=0.573  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|+.|||||||++.++|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999999853

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.92  E-value=0.0035  Score=52.05  Aligned_cols=22  Identities=36%  Similarity=0.622  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4799999999999999999874

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.88  E-value=0.0024  Score=55.38  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      -.++|+|+.|+|||||++.++|-
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            36899999999999999999985

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.87  E-value=0.0053  Score=51.12  Aligned_cols=25  Identities=28%  Similarity=0.545  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+..+.|.||.|+|||||++.++..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.86  E-value=0.0037  Score=54.01  Aligned_cols=23  Identities=22%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|+.|+|||||++.+++..
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998753

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.86  E-value=0.0042  Score=56.47  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|..|||||||++.++|.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999995

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.85  E-value=0.0039  Score=51.78  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.85  E-value=0.0047  Score=52.38  Aligned_cols=22  Identities=27%  Similarity=0.678  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.84  E-value=0.0044  Score=54.30  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +|-++.|.|+.||||||+++.|+-.+
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l   30 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERL   30 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999997543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.84  E-value=0.001  Score=57.68  Aligned_cols=45  Identities=29%  Similarity=0.341  Sum_probs=33.0

Q ss_pred             cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938          190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  237 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~  237 (348)
                      .+|.+|++||.-. +|+.....+...+.+.  ..+..+|++|++...+
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~~~  169 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQKL  169 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGGGS
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChHhC
Confidence            4688999999765 7888777777776542  2367888899886543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.84  E-value=0.0045  Score=56.58  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++.|+|++||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999985

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.82  E-value=0.0037  Score=52.70  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999885

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.81  E-value=0.0036  Score=52.28  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.81  E-value=0.0052  Score=52.33  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.81  E-value=0.0051  Score=51.97  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999884

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.81  E-value=0.0057  Score=53.94  Aligned_cols=24  Identities=38%  Similarity=0.540  Sum_probs=21.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.++.|+|+.||||||+.+.|+-
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999975

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.81  E-value=0.0041  Score=53.01  Aligned_cols=22  Identities=27%  Similarity=0.647  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.80  E-value=0.0051  Score=54.86  Aligned_cols=26  Identities=23%  Similarity=0.400  Sum_probs=23.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +|.++.|.|++||||||+++.|+..+
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999997643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.79  E-value=0.0051  Score=53.80  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.++|-
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999884

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.79  E-value=0.0041  Score=52.41  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4899999999999999999874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.79  E-value=0.0042  Score=51.83  Aligned_cols=22  Identities=27%  Similarity=0.452  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4689999999999999999863

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.78  E-value=0.0042  Score=52.34  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.78  E-value=0.0038  Score=52.41  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.77  E-value=0.0042  Score=52.81  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.77  E-value=0.0048  Score=58.00  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+||+|||||||.+.|+..
T Consensus         9 lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCcHHHHHHHHHHH
Confidence            7999999999999999999864

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.77  E-value=0.0054  Score=59.29  Aligned_cols=28  Identities=29%  Similarity=0.251  Sum_probs=23.9

Q ss_pred             eEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           60 LTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        60 l~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +.-....++.|+|++||||||+.+.|+.
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3345678999999999999999999875

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.76  E-value=0.0051  Score=51.72  Aligned_cols=22  Identities=41%  Similarity=0.587  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999863

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.75  E-value=0.0047  Score=56.77  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|+.|||||||++.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999964

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.75  E-value=0.0051  Score=52.54  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5799999999999999999874

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.74  E-value=0.0041  Score=52.70  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.74  E-value=0.0045  Score=52.75  Aligned_cols=21  Identities=43%  Similarity=0.890  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|++|+|||||++.++|
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999986

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.73  E-value=0.0059  Score=53.56  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +|.++.|-|++||||||+++.|.-.+
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l   27 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETL   27 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999999997643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.72  E-value=0.0046  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999853

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.72  E-value=0.0042  Score=52.49  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999873

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.70  E-value=0.0042  Score=53.78  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+|+.|+|||||++.+++.
T Consensus        32 ~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           32 AVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.69  E-value=0.0048  Score=51.66  Aligned_cols=22  Identities=41%  Similarity=0.587  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999984

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.68  E-value=0.005  Score=51.88  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999863

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.68  E-value=0.0058  Score=59.88  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ..+++.+ +.+-+|+..+|+|++|+|||||++.|+...
T Consensus       139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence            3456655 677899999999999999999999997643

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.67  E-value=0.0054  Score=53.18  Aligned_cols=24  Identities=33%  Similarity=0.390  Sum_probs=21.2

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +-+++|+|+.||||||+.+.|+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999999863

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.67  E-value=0.0044  Score=52.89  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999999874

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.66  E-value=0.0062  Score=55.12  Aligned_cols=25  Identities=40%  Similarity=0.680  Sum_probs=22.4

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCCc
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKHM   90 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~~   90 (348)
                      -.++++|.+|+|||||++.|.|-..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            4899999999999999999998643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.66  E-value=0.005  Score=51.99  Aligned_cols=22  Identities=27%  Similarity=0.637  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4789999999999999999874

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.66  E-value=0.0065  Score=52.33  Aligned_cols=22  Identities=36%  Similarity=0.529  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.65  E-value=0.0046  Score=52.26  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4789999999999999999874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.62  E-value=0.0021  Score=59.88  Aligned_cols=43  Identities=19%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  236 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~  236 (348)
                      ++.+|++|| ...|++.....+.+.+.+..  ....+|++|++...
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~~  175 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVTR  175 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchhh
Confidence            678999999 78899998888888887653  24557777776653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.62  E-value=0.0069  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.671  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.61  E-value=0.0053  Score=51.91  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5889999999999999999874

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.61  E-value=0.0048  Score=53.10  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4799999999999999988763

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.59  E-value=0.0055  Score=51.68  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5799999999999999999863

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.59  E-value=0.0086  Score=52.00  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=28.3

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ...+...-+.+ .|..+.|+||+|||||||...|+-
T Consensus        22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred             ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence            34566665665 578899999999999999998875

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.59  E-value=0.007  Score=53.22  Aligned_cols=27  Identities=33%  Similarity=0.372  Sum_probs=24.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .+|.++.|.|+.||||||+++.|+-.+
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l   29 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKL   29 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999998754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.58  E-value=0.0063  Score=51.72  Aligned_cols=23  Identities=39%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|+.|+|||||++.+.|-.
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998843

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.58  E-value=0.0062  Score=50.64  Aligned_cols=21  Identities=14%  Similarity=0.283  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            578999999999999999984

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.58  E-value=0.0065  Score=52.54  Aligned_cols=22  Identities=36%  Similarity=0.747  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.56  E-value=0.0057  Score=51.40  Aligned_cols=22  Identities=27%  Similarity=0.629  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999874

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.56  E-value=0.0058  Score=52.06  Aligned_cols=22  Identities=23%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5799999999999999999874

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.55  E-value=0.0059  Score=51.81  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.55  E-value=0.0065  Score=54.64  Aligned_cols=22  Identities=27%  Similarity=0.611  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.++|-
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999984

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.54  E-value=0.0068  Score=56.57  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+||+|||||||.+.|+..
T Consensus         7 ~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.52  E-value=0.0064  Score=50.54  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=21.6

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+..+.|.||.|+|||||++.++..
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3567889999999999999999764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.52  E-value=0.006  Score=52.22  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.52  E-value=0.0066  Score=54.80  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++++|+.|+|||||++.|+|-
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999984

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.52  E-value=0.007  Score=53.48  Aligned_cols=27  Identities=22%  Similarity=0.235  Sum_probs=23.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .+|-++.|.|+.||||||+.+.|+-.+
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l   45 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYL   45 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999997643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.51  E-value=0.0072  Score=50.16  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999863

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.51  E-value=0.0054  Score=52.39  Aligned_cols=22  Identities=32%  Similarity=0.644  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.50  E-value=0.0065  Score=53.77  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.6

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      |.+++|.|+.||||||+.+.|+-.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            568999999999999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.49  E-value=0.0048  Score=51.24  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999863

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.48  E-value=0.0068  Score=51.44  Aligned_cols=21  Identities=52%  Similarity=0.624  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+.+
T Consensus        31 ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999976

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.48  E-value=0.0064  Score=55.30  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|..|+|||||++.|+|..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCC
Confidence            68999999999999999999964

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.47  E-value=0.0048  Score=51.45  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=9.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999998863

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.45  E-value=0.0059  Score=52.38  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.45  E-value=0.0073  Score=56.70  Aligned_cols=26  Identities=19%  Similarity=0.368  Sum_probs=22.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++.+++|+||.|||||||...|+--+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            45689999999999999999999753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.45  E-value=0.0059  Score=52.66  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999874

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.44  E-value=0.0068  Score=51.17  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5799999999999999888763

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.44  E-value=0.0076  Score=56.03  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.+++|+||+|||||||...|+--
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            347899999999999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.42  E-value=0.0089  Score=52.11  Aligned_cols=22  Identities=41%  Similarity=0.824  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|++|+|||||++.++|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.40  E-value=0.0058  Score=53.80  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=23.1

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.+..++.|+||.||||||..+.|+-
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            345667899999999999999999974

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.40  E-value=0.0069  Score=52.06  Aligned_cols=22  Identities=27%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.39  E-value=0.0043  Score=53.57  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.35  E-value=0.0096  Score=52.86  Aligned_cols=26  Identities=31%  Similarity=0.526  Sum_probs=21.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ....-+.|.||.|+|||||++.|+..
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34456889999999999999999863

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.31  E-value=0.0056  Score=55.00  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=23.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++-+++|.|+.||||||+.+.|+-.+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            467799999999999999999998643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.31  E-value=0.007  Score=51.66  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999874

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.29  E-value=0.007  Score=59.11  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|++|+|||||++.|+|-
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7999999999999999999983

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.23  E-value=0.0079  Score=50.76  Aligned_cols=22  Identities=32%  Similarity=0.688  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.22  E-value=0.0025  Score=57.23  Aligned_cols=30  Identities=37%  Similarity=0.680  Sum_probs=23.5

Q ss_pred             eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++.+..+.|  +.|.||+|+|||||++.|+..
T Consensus        38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred             HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence            334444555  779999999999999999873

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.18  E-value=0.007  Score=50.85  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+.+
T Consensus        24 ~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           24 RVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999975

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.18  E-value=0.0098  Score=51.62  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++-++.-
T Consensus        40 ~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           40 AFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.12  E-value=0.011  Score=54.75  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+++|+||+|||||||...|+-.
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            47899999999999999999853

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.11  E-value=0.012  Score=51.28  Aligned_cols=21  Identities=33%  Similarity=0.444  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++.|+||.||||+|..+.|+-
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999985

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.07  E-value=0.0048  Score=52.47  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=4.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.04  E-value=0.0096  Score=50.91  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            4799999999999999999863

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.98  E-value=0.01  Score=50.92  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+++
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            588999999999999988875

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.97  E-value=0.013  Score=50.95  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      |.+++|=|+-||||||+++.|+-.+
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L   26 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRL   26 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHH
Confidence            5688999999999999999998644

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.96  E-value=0.018  Score=48.84  Aligned_cols=34  Identities=15%  Similarity=0.139  Sum_probs=26.1

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      +..++..-+.+ .|.-+.|.|+||+|||||...+.
T Consensus         4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~   37 (181)
T 3tqf_A            4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALI   37 (181)
T ss_dssp             CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            34555555554 57789999999999999988775

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=94.95  E-value=0.011  Score=51.23  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5799999999999999999874

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.95  E-value=0.015  Score=49.57  Aligned_cols=53  Identities=11%  Similarity=0.225  Sum_probs=35.6

Q ss_pred             cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh----------hhhhhCCEEEEEc
Q 018938          190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD----------GLENWPSHIVYVA  248 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~----------~~~~~~d~v~~l~  248 (348)
                      .+++++++||--. +++    .+.+.|..+..+ |..|+++.++.+          .+..+||.|..|+
T Consensus        75 ~~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~  137 (184)
T 2orw_A           75 EDTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK  137 (184)
T ss_dssp             TTEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence            3678999999743 554    355566666554 889999888655          1223577776664

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.91  E-value=0.012  Score=50.98  Aligned_cols=22  Identities=32%  Similarity=0.629  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5889999999999999998763

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.90  E-value=0.014  Score=47.49  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=21.7

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+.-+.|.||.|+|||++.+.|...
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHh
Confidence            4556889999999999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.82  E-value=0.0068  Score=58.94  Aligned_cols=31  Identities=39%  Similarity=0.454  Sum_probs=25.2

Q ss_pred             eEEeCC--CEEEEECCCCCcHHHHHHHHhCCCc
Q 018938           60 LTLNAG--DRCLLVGSNGAGKTTILKIIGGKHM   90 (348)
Q Consensus        60 l~i~~G--e~~~liG~NGsGKSTLlk~i~Gl~~   90 (348)
                      |.+.++  .+++|+|++|+||||++..|++.+.
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            444434  5899999999999999999998654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.71  E-value=0.016  Score=49.29  Aligned_cols=43  Identities=28%  Similarity=0.415  Sum_probs=31.0

Q ss_pred             cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh
Q 018938          190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD  235 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~  235 (348)
                      .++.+|++||. ..+++.....+..++.+.  ..+..+|++|....
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~  143 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS  143 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence            47889999995 567787777777777653  23566777777654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=94.71  E-value=0.016  Score=52.98  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      -.++|+|.+|+|||||+|.|.|-.
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCc
Confidence            368999999999999999999853

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.69  E-value=0.013  Score=50.19  Aligned_cols=22  Identities=32%  Similarity=0.617  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999863

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=94.60  E-value=0.017  Score=55.46  Aligned_cols=41  Identities=12%  Similarity=-0.037  Sum_probs=27.6

Q ss_pred             HHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEe
Q 018938          155 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLL  197 (348)
Q Consensus       155 ~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlL  197 (348)
                      .+.++++.++...  ....+|..+...+.-...+...|-++++
T Consensus       181 ~~~~~l~~l~~~~--~~~~~~~~e~~~l~~~~~~~~kP~i~v~  221 (397)
T 1wxq_A          181 DVWEAMHKLNLPE--DPTKWSQDDLLAFASEIRRVNKPMVIAA  221 (397)
T ss_dssp             HHHHHHHHTTCCS--CGGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             HHHHHHHHhccCC--ccccCCHHHHHHHHHhhhccCCCEEEEE
Confidence            3445555555432  2447899988888777667779998887

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.55  E-value=0.02  Score=50.72  Aligned_cols=22  Identities=41%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -.+||+|+.||||||+.+.|+-
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.54  E-value=0.02  Score=52.15  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++..+.|.||.|+|||||.+.++..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4557899999999999999988864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.43  E-value=0.018  Score=55.31  Aligned_cols=22  Identities=18%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+++|.||+|||||||.+.|+-
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            3789999999999999999875

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.40  E-value=0.021  Score=53.74  Aligned_cols=25  Identities=28%  Similarity=0.484  Sum_probs=21.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .-+++|+|+.|+|||||++.|++.+
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3489999999999999999997643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=94.38  E-value=0.0051  Score=52.39  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+++-
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~   56 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADD   56 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998874

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.36  E-value=0.018  Score=55.91  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|++|+|||||++.|+|-
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~   26 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGE   26 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=94.29  E-value=0.014  Score=50.53  Aligned_cols=21  Identities=48%  Similarity=0.822  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHH-HhC
Q 018938           67 RCLLVGSNGAGKTTILKI-IGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~-i~G   87 (348)
                      .++|+|+.|+|||||++. +.|
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~   38 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTG   38 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            478999999999999998 544

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=93.32  E-value=0.0078  Score=51.37  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+.+
T Consensus        32 ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            589999999999999998876

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=94.28  E-value=0.022  Score=51.15  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +...+.|.||.|+|||||.+.|+.
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            344688999999999999999986

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=94.26  E-value=0.016  Score=54.52  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|..|+|||||++.|+|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999999964

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.26  E-value=0.028  Score=51.94  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.-+.|.||.|+|||+|+++|+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999999863

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.20  E-value=0.31  Score=43.07  Aligned_cols=52  Identities=21%  Similarity=0.186  Sum_probs=38.5

Q ss_pred             cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC----------hhhhhhhCCEEEEEc
Q 018938          190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI----------FDGLENWPSHIVYVA  248 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd----------~~~~~~~~d~v~~l~  248 (348)
                      .+.+++++||---..|      +.++++.+. +.|+.||+.-+|          ...+..+||.|.-|+
T Consensus        89 ~~~dvViIDEaQF~~~------v~el~~~l~-~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD------IVEFCEAMA-NAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TTCSEEEESSGGGCTT------HHHHHHHHH-HTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCEEEEEchhhhhh------HHHHHHHHH-hCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            6789999999977754      444444433 369999999999          344557899998764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.16  E-value=0.027  Score=52.31  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=22.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+..-+.|.||.|+|||||.+.++..
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHH
Confidence            34567899999999999999999974

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=94.12  E-value=0.023  Score=52.39  Aligned_cols=23  Identities=35%  Similarity=0.631  Sum_probs=20.4

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      -.++|+|+.|+|||||++.+.+-
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999998774

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=94.09  E-value=0.026  Score=51.16  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=21.4

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +.-+.|.||.|+|||||++.++..+
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999998743

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.08  E-value=0.026  Score=53.11  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++..+.|.||+|+||||+.+.|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            34568899999999999999998753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=94.04  E-value=0.021  Score=54.16  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++..++++|.+|+|||||+|.|.|.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4668999999999999999999984

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=94.00  E-value=0.028  Score=51.38  Aligned_cols=23  Identities=22%  Similarity=0.174  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ..+.|.||.|+|||+|.+.|+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45778899999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-28
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	9e-25
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	2e-22
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	4e-22
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	8e-22
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-21
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-21
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	4e-21
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-20
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-20
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	4e-20
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	1e-19
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	5e-19
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	8e-19
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	3e-18
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	7e-18
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	5e-17
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-16
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-15
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	3e-13
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-05
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-04
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	5e-04
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.004

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  107 bits (269), Expect = 1e-28
 Identities = 44/210 (20%), Positives = 86/210 (40%), Gaps = 32/210 (15%)

Query: 32  EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV 91
           EI  L   Y            P++   T+T+  G+     G NG GKTT+LK I      
Sbjct: 4   EIRDLSVGY----------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 53

Query: 92  EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGI 151
               +   G                    + + ++ F   E+ +   +S E  +  VA +
Sbjct: 54  LKGEIIYNGVPIT----------------KVKGKIFFLPEEIIVPRKISVEDYLKAVASL 97

Query: 152 -----DPQRRAELIKVLDI-DLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLD 205
                +     + ++ +++ DL  ++ ++S G  RRVQ+   LL   ++ +LD+  V +D
Sbjct: 98  YGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 157

Query: 206 VLARADLLRFLRKECEERGATIIYATHIFD 235
             ++  +L+ + +  +E+G  II +     
Sbjct: 158 EDSKHKVLKSILEILKEKGIVIISSREELS 187

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 98.8 bits (246), Expect = 9e-25
 Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 35/244 (14%)

Query: 23  VMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTIL 82
           V++ +   +E   + FTYPG          P + +  L + AG    LVG +G+GK+TI 
Sbjct: 6   VIDRATGDLEFRNVTFTYPG-------REVPALRNINLKIPAGKTVALVGRSGSGKSTIA 58

Query: 83  KIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE 142
            +I   + ++   + + G                Y     R +VA     V +  D  A 
Sbjct: 59  SLITRFYDIDEGHILMDGHDLRE-----------YTLASLRNQVALVSQNVHLFNDTVAN 107

Query: 143 KMIFGVAGIDPQRRAE--------------LIKVLDIDLSWRMHKVSDGQRRRVQICMGL 188
            + +       + + E              +   LD  +      +S GQR+R+ I   L
Sbjct: 108 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167

Query: 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248
           L+   +L+LDE T  LD  +   +   L +    +  T +   H    +E     IV V 
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIEQA-DEIVVVE 224

Query: 249 HGKL 252
            G +
Sbjct: 225 DGII 228

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 92.3 bits (229), Expect = 2e-22
 Identities = 49/236 (20%), Positives = 96/236 (40%), Gaps = 36/236 (15%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +    ++F Y        P S  ++++  L++  G+   +VG +G+GK+T+ K+I   ++
Sbjct: 2   ITFRNIRFRYK-------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 54

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLG-GEWRREVAFAGFEVPIQMDVSAEKMIFGVA 149
            E   V + G             DL+       RR+V     +  +      + +     
Sbjct: 55  PENGQVLIDGH------------DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 102

Query: 150 GIDPQRRAELIKVLDIDL-------------SWRMHKVSDGQRRRVQICMGLLKPFKVLL 196
           G+  ++     K+                    +   +S GQR+R+ I   L+   K+L+
Sbjct: 103 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI 162

Query: 197 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
            DE T  LD  +   ++R + K C  +G T+I   H    ++N    I+ +  GK+
Sbjct: 163 FDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKNA-DRIIVMEKGKI 215

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 92.3 bits (229), Expect = 4e-22
 Identities = 43/231 (18%), Positives = 85/231 (36%), Gaps = 24/231 (10%)

Query: 25  ENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKI 84
            + K + + N + F++  + G       P++ +  L +  G+   + GS G+GKT++L +
Sbjct: 28  GDRKHSSDENNVSFSHLCLVG------NPVLKNINLNIEKGEMLAITGSTGSGKTSLLML 81

Query: 85  IGGKHMVEPEMVKVLGRSA--FHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE 142
           I G+      ++K  GR +     + +        + G  +  + F      +  D    
Sbjct: 82  ILGELEASEGIIKHSGRVSFCSQFSWI--------MPGTIKENIIF-----GVSYDEYRY 128

Query: 143 KMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV 202
           K +     +  Q   +  +  +  L      +S GQR R+ +   + K   + LLD    
Sbjct: 129 KSVVKACQLQ-QDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 187

Query: 203 DLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
            LDV     +      +      T I  T   + L      I+ +  G   
Sbjct: 188 YLDVFTEEQVFESCVCK-LMANKTRILVTSKMEHLRKA-DKILILHQGSSY 236

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 90.6 bits (225), Expect = 8e-22
 Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 38/243 (15%)

Query: 20  KMAVMENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKT 79
           KM         V++  L   +         G+   +N   LT+  G+  +L+G +G GKT
Sbjct: 3   KMV-------EVKLENLTKRF---------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKT 46

Query: 80  TILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRR-EVAFAGFEVPIQMD 138
           T L++I G        +    R            D++YL  + R   + F  + V   M 
Sbjct: 47  TTLRMIAGLEEPTEGRIYFGDR------------DVTYLPPKDRNISMVFQSYAVWPHMT 94

Query: 139 VSAEKMIFG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLK 190
           V  E + F   +         +R     ++L I+  L+    ++S GQR+RV +   ++ 
Sbjct: 95  V-YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 153

Query: 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250
              VLL+DE   +LD   R  +   ++K  ++   T IY TH           I  +  G
Sbjct: 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRG 213

Query: 251 KLQ 253
           +L 
Sbjct: 214 QLL 216

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 90.6 bits (225), Expect = 1e-21
 Identities = 47/242 (19%), Positives = 95/242 (39%), Gaps = 34/242 (14%)

Query: 24  MENSKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILK 83
           +E  +  ++I+ + F Y            P++ D  L++  G+    VG +G GK+T++ 
Sbjct: 10  IEIKQGRIDIDHVSFQYND-------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN 62

Query: 84  IIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK 143
           +I      +       G+       +       +L G  R ++     +  +  D   E 
Sbjct: 63  LIPR--FYDVTS----GQILIDGHNIK-----DFLTGSLRNQIGLVQQDNILFSDTVKEN 111

Query: 144 MIFGVAGIDPQRRAELIKV-------------LDIDLSWRMHKVSDGQRRRVQICMGLLK 190
           ++ G      +   E  K+              D ++  R  K+S GQ++R+ I    L 
Sbjct: 112 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171

Query: 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250
              +L+LDE T  LD+ + + +   L    ++R  T +   H    + +    IV + +G
Sbjct: 172 NPPILILDEATSALDLESESIIQEALDVLSKDR--TTLIVAHRLSTITHA-DKIVVIENG 228

Query: 251 KL 252
            +
Sbjct: 229 HI 230

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 88.8 bits (220), Expect = 3e-21
 Identities = 44/244 (18%), Positives = 93/244 (38%), Gaps = 17/244 (6%)

Query: 27  SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86
           S   +E+ +L   Y         G+   I    L +  G    L+G+NGAGKTT L  I 
Sbjct: 3   SDIVLEVQSLHVYY---------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIA 53

Query: 87  GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF 146
           G  +V  +  K++            +  ++ +G     E      E+ +  ++       
Sbjct: 54  G--LVRAQKGKIIFNGQDITN--KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR 109

Query: 147 GVAGIDPQRRAELIKV---LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 203
                  +    +  +   L   L      +S G+++ + I   L+   K+L++DE ++ 
Sbjct: 110 KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLG 169

Query: 204 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263
           L  +  +++   ++K  +E G TI+       G      +   +  G++ L     ++ +
Sbjct: 170 LAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

Query: 264 ASKL 267
              +
Sbjct: 229 NEMV 232

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.8 bits (220), Expect = 4e-21
 Identities = 46/238 (19%), Positives = 92/238 (38%), Gaps = 34/238 (14%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           V+   + F YP            ++   T TL  G+   LVG NG+GK+T+  ++   + 
Sbjct: 12  VQFQDVSFAYPNRPDVL------VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLG-GEWRREVAFAGFEVPIQMDVSAEKMIFGV- 148
                + + G+             L         R+VA  G E  +      E + +G+ 
Sbjct: 66  PTGGQLLLDGK------------PLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLT 113

Query: 149 ------AGIDPQRRAELIKVL-------DIDLSWRMHKVSDGQRRRVQICMGLLKPFKVL 195
                        ++     +       D ++     ++S GQR+ V +   L++   VL
Sbjct: 114 QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVL 173

Query: 196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
           +LD+ T  LD  ++  + + L +  E    +++  T     +E    HI+++  G ++
Sbjct: 174 ILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA-DHILFLEGGAIR 230

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 87.2 bits (216), Expect = 1e-20
 Identities = 44/236 (18%), Positives = 84/236 (35%), Gaps = 36/236 (15%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +    + F Y          S  ++ D +            G +G GK+TI  ++     
Sbjct: 2   LSARHVDFAYDD--------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER--F 51

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG 150
            +P      G        +    ++S     WR ++ F   +  I      E + +G+ G
Sbjct: 52  YQPTA----GEITIDGQPID---NISL--ENWRSQIGFVSQDSAIMAGTIRENLTYGLEG 102

Query: 151 IDPQ-------RRAELIKVLDID-------LSWRMHKVSDGQRRRVQICMGLLKPFKVLL 196
                        A     ++         +  R  K+S GQR+R+ I    L+  K+L+
Sbjct: 103 DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM 162

Query: 197 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
           LDE T  LD  + + + + L      +G T +   H    + +    I ++  G++
Sbjct: 163 LDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLSTIVD-ADKIYFIEKGQI 215

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 86.8 bits (215), Expect = 2e-20
 Identities = 44/236 (18%), Positives = 98/236 (41%), Gaps = 26/236 (11%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           +++  +  TY   +          + +  L +  G+   ++G +G+GK+T+L IIG   +
Sbjct: 2   IKLKNVTKTYKMGEE-----IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC--L 54

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA------GFEVPIQMDVSAEKM 144
            +P      G     +       D   L    R ++ F          +    +V    +
Sbjct: 55  DKPTE----GEVYIDNIKTNDLDD-DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109

Query: 145 IFGVAGIDPQRRAE-------LIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLL 197
                 +  + R +       + ++ +   + + +++S GQ++RV I   L     ++L 
Sbjct: 110 FKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169

Query: 198 DEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
           D+ T  LD      +++ L+K  EE G T++  TH  + +  +   I+Y+  G+++
Sbjct: 170 DQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKDGEVE 224

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 86.0 bits (213), Expect = 4e-20
 Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 25/237 (10%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           + +  L   Y         G   ++   +L   AGD   ++GS+G+GK+T L+ I     
Sbjct: 3   LHVIDLHKRY---------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 53

Query: 91  VEPEMVKVLGR--SAFHDTALTSSGDLSYLGGEWRREVA--FAGFEVPIQMDVSAEKMIF 146
                + V G+  +   D                R  +   F  F +   M V  E ++ 
Sbjct: 54  PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV-LENVME 112

Query: 147 G---VAGIDP----QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFKVLL 196
               V G+      +R  + +  + ID          +S GQ++RV I   L     VLL
Sbjct: 113 APIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 172

Query: 197 LDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
            DE T  LD     ++LR   ++  E G T++  TH      +  SH++++  GK++
Sbjct: 173 FDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 84.3 bits (208), Expect = 1e-19
 Identities = 49/242 (20%), Positives = 98/242 (40%), Gaps = 31/242 (12%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           V +  L+            G   ++   +  +  G+   L+G NGAGKTT L+II     
Sbjct: 3   VVVKDLRKRI---------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 53

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA---EKMIFG 147
               +V V G++   +              E R+ +++   E     ++      + + G
Sbjct: 54  PSSGIVTVFGKNVVEEPH------------EVRKLISYLPEEAGAYRNMQGIEYLRFVAG 101

Query: 148 VAGIDPQRRAELIKV------LDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 201
                     E+++       L   +  R+   S G  R++ I   L+   ++ +LDE T
Sbjct: 102 FYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 161

Query: 202 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261
             LDVL   ++ + L++  +E   TI+ ++H    +E     I  + +G +     ++++
Sbjct: 162 SGLDVLNAREVRKILKQASQEG-LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220

Query: 262 KE 263
           KE
Sbjct: 221 KE 222

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 82.6 bits (204), Expect = 5e-19
 Identities = 47/231 (20%), Positives = 96/231 (41%), Gaps = 22/231 (9%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           ++++ +   +          +   +N+ +L + AG    ++G++GAGK+T+++ +    +
Sbjct: 2   IKLSNITKVFHQ-----GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL--L 54

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG------FEVPIQMDVSAEKM 144
             P      G        LT+  +      + RR++              +  +V+    
Sbjct: 55  ERPTE----GSVLVDGQELTTLSESELT--KARRQIGMIFQHFNLLSSRTVFGNVALPLE 108

Query: 145 IFGVAGIDPQRRA-ELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEIT 201
           +      + +RR  EL+ ++ +          +S GQ++RV I   L    KVLL DE T
Sbjct: 109 LDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168

Query: 202 VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
             LD      +L  L+      G TI+  TH  D ++     +  +++G+L
Sbjct: 169 SALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 81.9 bits (202), Expect = 8e-19
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 20/226 (8%)

Query: 52  TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
           +  +   +  + AG+   LVG NGAGK+T+L  + G       M    G   F    L  
Sbjct: 12  STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-------MTSGKGSIQFAGQPLE- 63

Query: 112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSW 169
               S       R         P    V     +        +   ++   L +D  L  
Sbjct: 64  --AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR 121

Query: 170 RMHKVSDGQRRRVQICMGLLKPF-------KVLLLDEITVDLDVLARADLLRFLRKECEE 222
             +++S G+ +RV++   +L+         ++LLLDE    LDV  ++ L + L   C++
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ 181

Query: 223 RGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEASKLS 268
            G  I+ ++H  +           +  GK+  +   ++V     L+
Sbjct: 182 -GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLA 226

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 80.9 bits (199), Expect = 3e-18
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           + +  +   +         G    +++  + +  G+R  ++G +GAGKTT ++II G  +
Sbjct: 4   IIVKNVSKVFKK-------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG 150
                +    R    +  L    +   +G  ++    +        +      M      
Sbjct: 57  PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE 116

Query: 151 IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 208
           I  +R  E+ K+LDI   L+    ++S  Q++RV +   L+K   +LLLDE   +LD   
Sbjct: 117 IR-KRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175

Query: 209 RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
           R      +++     G T++  +H    +      +  +  GKL 
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 79.6 bits (196), Expect = 7e-18
 Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 13/226 (5%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           V +  +   +         G    + + +L +  G+  +L+G +G GKTT L++I G   
Sbjct: 4   VRLVDVWKVF---------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG 150
                + +  +                      +  A               K +  V  
Sbjct: 55  PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK-LRKVPR 113

Query: 151 IDPQRRA-ELIKVLDI-DLSWRM-HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL 207
            +  +R  E+ ++L + +L  R   ++S GQR+RV +   +++  +V L+DE   +LD  
Sbjct: 114 QEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173

Query: 208 ARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
            R  +   L+K   + G T IY TH           I  +  G LQ
Sbjct: 174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 77.3 bits (190), Expect = 5e-17
 Identities = 37/215 (17%), Positives = 88/215 (40%), Gaps = 13/215 (6%)

Query: 50  GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109
           G    ++  ++++N GD  L++G NG+GK+T++ +I G    +   V    +   +    
Sbjct: 15  GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 74

Query: 110 TSSG--------DLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR--AEL 159
                           L      E    G   P +  +++      +   +       ++
Sbjct: 75  ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 134

Query: 160 IKVLDIDLSW--RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR 217
           ++ L +   +  +  ++S GQ + V+I   L+   K++++DE    +      D+   + 
Sbjct: 135 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194

Query: 218 KECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252
            E + +G T +   H  D + N+  H+  + +G++
Sbjct: 195 -ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 74.6 bits (183), Expect = 3e-16
 Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 17/225 (7%)

Query: 31  VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM 90
           V++  +   +         G   +  D  L ++ G+  + VG +G GK+T+L++I G   
Sbjct: 1   VQLQNVTKAW---------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 51

Query: 91  VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAG 150
           +    + +  +         +      +G  ++    +    V   M    +        
Sbjct: 52  ITSGDLFIGEKRMND-----TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV 106

Query: 151 IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 208
           I+ QR  ++ +VL +   L  +   +S GQR+RV I   L+    V LLDE   +LD   
Sbjct: 107 IN-QRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 165

Query: 209 RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
           R  +   + +  +  G T+IY TH           IV +  G++ 
Sbjct: 166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA 210

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 72.0 bits (176), Expect = 2e-15
 Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 11/201 (5%)

Query: 55  INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGD 114
           +++ +L + +G+  +++G  GAGKT  L++I G     P+  ++L              D
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRILLDGKDVTDLSPEKHD 73

Query: 115 LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI--DLSWRMH 172
           ++++   +         +         +         DP+R  +  + L I   L     
Sbjct: 74  IAFVYQNYSLFPHMNVKKNLEFGMRMKKIK-------DPKRVLDTARDLKIEHLLDRNPL 126

Query: 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232
            +S G+++RV +   L+   K+LLLDE    LD   + +    L    ++   T+++ TH
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186

Query: 233 IFDGLENWPSHIVYVAHGKLQ 253
                      I  V  GKL 
Sbjct: 187 DQTEARIMADRIAVVMDGKLI 207

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 66.6 bits (162), Expect = 3e-13
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 23/209 (11%)

Query: 55  INDFTLTLN---AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111
           + +F L ++     D C+L+G  GAGK+  L++I G    +   V++ G           
Sbjct: 11  LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA---------- 60

Query: 112 SGDLSYLGGEWRREVAF-----AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID 166
             D++ L    RR + F     A F         A  +         +R  E+ + L I 
Sbjct: 61  --DITPLP-PERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA 117

Query: 167 --LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERG 224
             L  +  ++S G+R+RV +   L+   ++LLLDE    +D+  +  L+  LR    E  
Sbjct: 118 HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177

Query: 225 ATIIYATHIFDGLENWPSHIVYVAHGKLQ 253
             I++ TH           +  + +G++ 
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIV 206

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 23/186 (12%), Positives = 49/186 (26%), Gaps = 30/186 (16%)

Query: 67  RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREV 126
           + ++ G  G GKTT++K I     +                            G W  EV
Sbjct: 2   KIIITGEPGVGKTTLVKKIVE--RLGKR-----------------------AIGFWTEEV 36

Query: 127 AFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICM 186
                +      +   +    +         +L+    +++ +   +             
Sbjct: 37  RDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY--FEELAIPILERAYRE 94

Query: 187 GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 246
                 KV+++DEI               +R+   +    ++    I D        I  
Sbjct: 95  AKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVATIPIRDVHPLV-KEIRR 151

Query: 247 VAHGKL 252
           +    L
Sbjct: 152 LPGAVL 157

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 16/168 (9%), Positives = 39/168 (23%), Gaps = 2/168 (1%)

Query: 69  LLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF 128
            L G  G GKTT++             V                 D+  L G        
Sbjct: 5   FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64

Query: 129 AGFE-VPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG 187
                   +     + ++   +                    R+  + +  +  +   + 
Sbjct: 65  GLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF 124

Query: 188 LLKPFKVL-LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 234
           +    + L     I +    + +   L  + +    +   +   T   
Sbjct: 125 IQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKEN 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.89
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.77
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.43
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.36
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.12
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.03
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.65
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.59
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	98.02
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.99
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.84
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.74
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.65
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.63
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.61
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.53
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.48
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.45
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.42
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.41
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.36
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.34
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.3
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.29
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.28
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.27
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.27
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.27
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.25
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.21
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.2
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.19
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.17
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.15
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.09
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.08
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.07
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.01
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.94
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.94
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.93
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.86
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.85
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.84
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.84
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.83
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.79
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.77
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.77
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.77
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.76
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.76
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.76
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.74
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.74
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.72
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.7
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.7
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.7
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.69
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.65
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.64
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.63
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.62
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.59
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.59
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.59
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.58
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.58
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.57
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.57
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.54
d1okkd2	207	GTPase domain of the signal recognition particle r	96.52
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.51
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.47
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.44
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.43
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.41
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.36
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.34
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.34
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.34
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.32
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.32
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.31
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.29
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.29
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.29
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.27
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.26
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.26
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.15
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.14
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.1
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.09
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.09
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.09
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.07
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.06
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.05
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.03
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.03
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.01
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.01
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.01
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.0
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.95
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.87
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.86
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.84
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.83
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.78
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.77
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.73
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.73
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.71
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.7
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.68
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.68
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.68
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.63
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.62
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.61
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.6
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.58
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.55
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.55
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.48
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.45
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.42
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.42
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.41
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.4
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.4
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.39
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.36
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.34
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.31
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.31
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.3
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.28
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.28
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.27
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.22
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.22
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.2
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.18
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.17
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.12
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.09
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.09
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.08
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.07
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.04
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.04
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.02
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.94
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.9
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.83
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.77
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.76
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.75
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.72
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.72
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.71
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.68
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.65
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.61
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.55
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.55
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.39
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.39
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.39
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.38
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.37
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.37
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.36
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.33
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.3
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.29
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.09
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.04
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.02
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.93
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.9
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.8
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.8
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.79
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.71
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.48
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.39
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.26
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.16
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.93
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.86
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.78
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.75
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.55
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.36
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.22
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.2
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.11
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	92.04
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	91.93
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.74
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	91.25
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.36
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.2
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.04
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.94
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	89.92
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.88
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.74
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	89.54
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.23
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.96
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.94
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	88.85
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	88.15
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.76
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	87.31
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	86.96
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	85.96
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	85.37
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	85.35
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.95
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	84.85
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	84.83
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	84.65
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	84.53
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	84.37
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	84.17
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	83.86
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	83.56
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	83.33
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	82.88
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	82.32
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	82.13
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.43
d1tuea_	205	Replication protein E1 helicase domain {Human papi	80.81
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	80.31

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.5e-59  Score=422.35  Aligned_cols=217  Identities=22%  Similarity=0.256  Sum_probs=184.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|+         +..||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... 
T Consensus         6 ~I~v~nlsk~yg---------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~-   75 (239)
T d1v43a3           6 EVKLENLTKRFG---------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP-   75 (239)
T ss_dssp             CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-
T ss_pred             eEEEEEEEEEEC---------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc-
Confidence            499999999994         5789999999999999999999999999999999999999999999999987643211 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                  .++.++|++|+..+++.+++.+.+ +..  .+.+.    +++.++++.+++.  .++++.+|||||||
T Consensus        76 ------------~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~Q  143 (239)
T d1v43a3          76 ------------KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQ  143 (239)
T ss_dssp             ------------GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHH
T ss_pred             ------------ccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHH
Confidence                        234577887777677777776544 322  23443    3456789999986  47889999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||+||||.++..++++|++++++.|+|||+||||++++.++||||++|++|+|++.|++++
T Consensus       144 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~e  223 (239)
T d1v43a3         144 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE  223 (239)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             HHHhhhhh
Q 018938          261 VKEASKLS  268 (348)
Q Consensus       261 ~~~~~~~~  268 (348)
                      +++.+...
T Consensus       224 l~~~P~~~  231 (239)
T d1v43a3         224 VYLRPNSV  231 (239)
T ss_dssp             HHHCCSBH
T ss_pred             HHhCCCCH
Confidence            98776543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=4.2e-59  Score=419.94  Aligned_cols=224  Identities=22%  Similarity=0.280  Sum_probs=190.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|+         +.+||+||||+|++||+++|+||||||||||+|+|+|++.|++|+|.++|+++......
T Consensus         3 ~i~v~nl~k~yg---------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~   73 (240)
T d1g2912           3 GVRLVDVWKVFG---------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG   73 (240)
T ss_dssp             EEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGT
T ss_pred             cEEEEeEEEEEC---------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchh
Confidence            699999999994         57899999999999999999999999999999999999999999999999876432110


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                          .   .....++.++|++|+..+++.+++.+.+ ++  ..+.+.    +++.++++.+++.  .++++++|||||||
T Consensus        74 ----~---~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQ  146 (240)
T d1g2912          74 ----I---FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQ  146 (240)
T ss_dssp             ----E---ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHH
T ss_pred             ----h---hcccccccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence                0   0011245688887777777777766543 22  233333    3567889999986  47889999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+++|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++|+|++.|++++
T Consensus       147 Rv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~e  226 (240)
T d1g2912         147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE  226 (240)
T ss_dssp             HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             HHHhhhhhh
Q 018938          261 VKEASKLSL  269 (348)
Q Consensus       261 ~~~~~~~~~  269 (348)
                      ++..+....
T Consensus       227 l~~~P~~~~  235 (240)
T d1g2912         227 VYDKPANTF  235 (240)
T ss_dssp             HHHSCSBHH
T ss_pred             HHhCCCCHH
Confidence            988766543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-59  Score=419.67  Aligned_cols=215  Identities=23%  Similarity=0.318  Sum_probs=161.6

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+|+|+         +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....   
T Consensus         1 Iev~nv~k~yg---------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~---   68 (232)
T d2awna2           1 VQLQNVTKAWG---------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP---   68 (232)
T ss_dssp             EEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC---
T ss_pred             CEEEEEEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCc---
Confidence            68999999994         578999999999999999999999999999999999999999999999998653211   


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRR  181 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR  181 (348)
                                ..++.++|++|+..+++.+++.+.+ ++.  .+.+    .+++.++++.+++.  .++++++||||||||
T Consensus        69 ----------~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQR  138 (232)
T d2awna2          69 ----------PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR  138 (232)
T ss_dssp             ----------GGGTCEEEECSSCCC---------------------CHHHHHHHHHHHHC--------------------
T ss_pred             ----------hhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHH
Confidence                      1235578887777777777766543 221  1222    24577899999986  478899999999999


Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV  261 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~  261 (348)
                      |+|||||+++|++|||||||+||||.++.+++++|+++.++.|+|||+||||++++..+||||++|++|+|++.|+++++
T Consensus       139 vaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el  218 (232)
T d2awna2         139 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL  218 (232)
T ss_dssp             -CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred             HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHH
Confidence            99999999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             HHhhhh
Q 018938          262 KEASKL  267 (348)
Q Consensus       262 ~~~~~~  267 (348)
                      +..+..
T Consensus       219 ~~~P~~  224 (232)
T d2awna2         219 YHYPAD  224 (232)
T ss_dssp             HHSCSB
T ss_pred             HhCCCC
Confidence            876554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=7.6e-59  Score=415.13  Aligned_cols=215  Identities=23%  Similarity=0.341  Sum_probs=188.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||||+|+          ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....  
T Consensus         1 mi~v~nlsk~y~----------~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~--   68 (229)
T d3d31a2           1 MIEIESLSRKWK----------NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS--   68 (229)
T ss_dssp             CEEEEEEEEECS----------SCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC--
T ss_pred             CEEEEEEEEEeC----------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccc--
Confidence            589999999994          25899999999999999999999999999999999999999999999998763211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~  183 (348)
                                 ..++.++|++|+..++..+++.+++ ++.  .+ ...+++.++++.+++.  .++++.+|||||||||+
T Consensus        69 -----------~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRva  137 (229)
T d3d31a2          69 -----------PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVA  137 (229)
T ss_dssp             -----------HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHH
T ss_pred             -----------hhHhcceeeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchh
Confidence                       1245688888777777777766543 222  22 3456788899999986  47889999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  263 (348)
                      |||||+++|++|||||||+||||.++.+++++|+++.++.|.|||+||||++++..+||||++|++|+|++.|+++++++
T Consensus       138 iAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~  217 (229)
T d3d31a2         138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE  217 (229)
T ss_dssp             HHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             hhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999999988889999999999999999999999999999999999999987


Q ss_pred             hhhh
Q 018938          264 ASKL  267 (348)
Q Consensus       264 ~~~~  267 (348)
                      .+..
T Consensus       218 ~P~~  221 (229)
T d3d31a2         218 KPVE  221 (229)
T ss_dssp             SCCT
T ss_pred             CCCC
Confidence            6544

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=4.9e-59  Score=419.23  Aligned_cols=224  Identities=21%  Similarity=0.278  Sum_probs=191.6

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|+.       |...||+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++......
T Consensus         3 ~i~v~nlsk~y~~-------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~   75 (242)
T d1oxxk2           3 RIIVKNVSKVFKK-------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL   75 (242)
T ss_dssp             CEEEEEEEEEEGG-------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEE
T ss_pred             EEEEEeEEEEECC-------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchh
Confidence            5999999999963       456899999999999999999999999999999999999999999999999976432211


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                          .    ....++.++|++|+..+++.+++.+.+ +++  .+.+.    +++.++++.+++.  .++++++|||||||
T Consensus        76 ----~----~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQ  147 (242)
T d1oxxk2          76 ----I----VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQ  147 (242)
T ss_dssp             ----S----SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHH
T ss_pred             ----h----cchhhccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHh
Confidence                0    012345688887776677777766543 433  23333    4567889999996  47899999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+++|++|||||||++|||.++..++++|+++.++.|.|||+||||++++..+||||++|++|+|++.|++++
T Consensus       148 RvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~e  227 (242)
T d1oxxk2         148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED  227 (242)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred             HHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             HHHhhhhh
Q 018938          261 VKEASKLS  268 (348)
Q Consensus       261 ~~~~~~~~  268 (348)
                      ++..+...
T Consensus       228 l~~~P~~~  235 (242)
T d1oxxk2         228 LYDNPVSI  235 (242)
T ss_dssp             HHHSCSSH
T ss_pred             HHhCCCCH
Confidence            98776543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.7e-59  Score=417.86  Aligned_cols=225  Identities=20%  Similarity=0.249  Sum_probs=189.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+|+|+...     +...||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++......
T Consensus         1 mi~v~nlsk~y~~~~-----~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~   75 (240)
T d3dhwc1           1 MIKLSNITKVFHQGT-----RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES   75 (240)
T ss_dssp             CEEEEEEEEEEECSS-----CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHH
T ss_pred             CEEEEeEEEEeCCCC-----eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChh
Confidence            589999999996410     123689999999999999999999999999999999999999999999999976432110


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                          .    ...+++.++|++|+..++..+++.+. .++  ..+.+    .+++.++++.+++.  .++++++|||||||
T Consensus        76 ----~----~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~Q  147 (240)
T d3dhwc1          76 ----E----LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ  147 (240)
T ss_dssp             ----H----HHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHH
T ss_pred             ----h----hhhhhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence                0    11345678998887766666666543 322  22222    24577899999986  47789999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+||||++++..+||||++|++|+|++.|++++
T Consensus       148 RvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~e  227 (240)
T d3dhwc1         148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE  227 (240)
T ss_dssp             HHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTT
T ss_pred             HHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             HHHhhhh
Q 018938          261 VKEASKL  267 (348)
Q Consensus       261 ~~~~~~~  267 (348)
                      +++++.+
T Consensus       228 i~~~P~~  234 (240)
T d3dhwc1         228 VFSHPKT  234 (240)
T ss_dssp             TTCSSCC
T ss_pred             HHhCCCC
Confidence            9876544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.9e-57  Score=404.93  Aligned_cols=216  Identities=20%  Similarity=0.304  Sum_probs=176.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+|+|+..+     ....||+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......
T Consensus         1 mI~i~nlsk~y~~~~-----~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~   75 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGE-----EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD   75 (230)
T ss_dssp             CEEEEEEEEEEEETT-----EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred             CEEEEeEEEEeCCCC-----eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChh
Confidence            589999999996310     123589999999999999999999999999999999999999999999999876432110


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHH-Hhcc-----CCCCH----HHHHHHHHHcCCC---cCccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGV-----AGIDP----QRRAELIKVLDID---LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~----~~~~~~l~~l~l~---~~~~~~~LSg  176 (348)
                          +   .....++.++|++|+..+++.+++.+. .++.     ...+.    +++.++++.+++.   .+++|++|||
T Consensus        76 ----~---~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSG  148 (230)
T d1l2ta_          76 ----E---LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG  148 (230)
T ss_dssp             ----H---HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCH
T ss_pred             ----h---cchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCH
Confidence                0   011123568888877766767776543 3221     12232    2455677888885   3668999999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||++||+.++..++++|+++.++.|+|||+||||++++ ++||||++|++|+|+++|
T Consensus       149 GqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g  227 (230)
T d1l2ta_         149 GQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREE  227 (230)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEec
Confidence            9999999999999999999999999999999999999999999888899999999999987 699999999999999988


Q ss_pred             Ch
Q 018938          257 PM  258 (348)
Q Consensus       257 ~~  258 (348)
                      ++
T Consensus       228 ~~  229 (230)
T d1l2ta_         228 KL  229 (230)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=8.9e-57  Score=406.66  Aligned_cols=218  Identities=19%  Similarity=0.246  Sum_probs=180.3

Q ss_pred             CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938           28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT  107 (348)
Q Consensus        28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~  107 (348)
                      +.+|+++||+|+|+         +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus         4 d~~Lev~~l~k~yg---------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~   74 (240)
T d1ji0a_           4 DIVLEVQSLHVYYG---------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP   74 (240)
T ss_dssp             SEEEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC
T ss_pred             ceEEEEeeEEEEEC---------CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccccccc
Confidence            46899999999994         578999999999999999999999999999999999999999999999999764321


Q ss_pred             cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC-CC--C--HHHHHHHHHHc-CCC--cCccCCCCCHHH
Q 018938          108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA-GI--D--PQRRAELIKVL-DID--LSWRMHKVSDGQ  178 (348)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~--~--~~~~~~~l~~l-~l~--~~~~~~~LSgGq  178 (348)
                      ..          ...+..++|+++...++..+++.+.. +... ..  .  .+...++++.+ ++.  .++++++|||||
T Consensus        75 ~~----------~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~  144 (240)
T d1ji0a_          75 AH----------VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGE  144 (240)
T ss_dssp             HH----------HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHH
T ss_pred             HH----------HHHHhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHH
Confidence            10          01123366777776677777776543 2221 11  1  12334455544 332  577899999999


Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM  258 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~  258 (348)
                      ||||+|||||+++|++|||||||+||||.++.+++++|++++++ |+|||++|||++++.++||||++|++|++++.|++
T Consensus       145 ~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~  223 (240)
T d1ji0a_         145 QQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKA  223 (240)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred             HHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence            99999999999999999999999999999999999999999765 99999999999999999999999999999999999


Q ss_pred             hHHHHhh
Q 018938          259 DKVKEAS  265 (348)
Q Consensus       259 ~~~~~~~  265 (348)
                      +++.+++
T Consensus       224 ~el~~~~  230 (240)
T d1ji0a_         224 SELLDNE  230 (240)
T ss_dssp             HHHHTCH
T ss_pred             HHHhcCH
Confidence            9998653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.9e-56  Score=408.10  Aligned_cols=231  Identities=21%  Similarity=0.261  Sum_probs=189.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|+         +..||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++......
T Consensus         2 ~Lev~nl~k~yg---------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~   72 (258)
T d1b0ua_           2 KLHVIDLHKRYG---------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK   72 (258)
T ss_dssp             CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECT
T ss_pred             eEEEEEEEEEEC---------CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCcc
Confidence            489999999994         57899999999999999999999999999999999999999999999999976432211


Q ss_pred             cccCcc--cccchhhhhhhhhcCCCccccccchHHHH-Hhc---cCCCCH----HHHHHHHHHcCCC---cCccCCCCCH
Q 018938          110 TSSGDL--SYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFG---VAGIDP----QRRAELIKVLDID---LSWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~----~~~~~~l~~l~l~---~~~~~~~LSg  176 (348)
                      ......  ......+++.++|++|+..++..+++.+. .++   ..+.+.    +++.++++.+++.   .++++.+|||
T Consensus        73 ~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSG  152 (258)
T d1b0ua_          73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG  152 (258)
T ss_dssp             TSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred             chhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccH
Confidence            000000  00112345678888777666666666543 222   223332    3466788889986   3567999999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+.+|++|||||||+|||+.++.+++++|+++++ .|.|||+||||++++..+||||++|++|+|++.|
T Consensus       153 G~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g  231 (258)
T d1b0ua_         153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG  231 (258)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence            999999999999999999999999999999999999999999976 4999999999999999999999999999999999


Q ss_pred             ChhHHHHhhhhhhH
Q 018938          257 PMDKVKEASKLSLM  270 (348)
Q Consensus       257 ~~~~~~~~~~~~~~  270 (348)
                      ++++++..+.+...
T Consensus       232 ~~~ev~~~P~~~~~  245 (258)
T d1b0ua_         232 DPEQVFGNPQSPRL  245 (258)
T ss_dssp             CHHHHHHSCCSHHH
T ss_pred             CHHHHHhCCCCHHH
Confidence            99999987665443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.4e-55  Score=395.56  Aligned_cols=214  Identities=22%  Similarity=0.343  Sum_probs=182.0

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|+         +++||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....  
T Consensus         2 aI~v~nl~k~yg---------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~--   70 (238)
T d1vpla_           2 AVVVKDLRKRIG---------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP--   70 (238)
T ss_dssp             CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH--
T ss_pred             CEEEEeEEEEEC---------CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccCh--
Confidence            488999999994         578999999999999999999999999999999999999999999999998754321  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHH---hccCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI---FGVAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR  180 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ  180 (348)
                                ...++.++|+++...++..++..+++   ..+.....    +..+.+++.+++.  .++++.+|||||||
T Consensus        71 ----------~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~q  140 (238)
T d1vpla_          71 ----------HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVR  140 (238)
T ss_dssp             ----------HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHH
T ss_pred             ----------HHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHH
Confidence                      13455677777766666666655443   11222232    2456677888886  46789999999999


Q ss_pred             HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938          181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK  260 (348)
Q Consensus       181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  260 (348)
                      ||+|||||+++|++|||||||+||||.++..++++|+++.++ |+|||++|||++++..+||||++|++|++++.|++++
T Consensus       141 rv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~e  219 (238)
T d1vpla_         141 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE  219 (238)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred             HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence            999999999999999999999999999999999999998754 9999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 018938          261 VKEAS  265 (348)
Q Consensus       261 ~~~~~  265 (348)
                      +....
T Consensus       220 l~~~~  224 (238)
T d1vpla_         220 LKERY  224 (238)
T ss_dssp             HHHHT
T ss_pred             HHhcc
Confidence            97653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.1e-55  Score=401.27  Aligned_cols=215  Identities=15%  Similarity=0.236  Sum_probs=179.5

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++||+|+|+         +.+||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....
T Consensus         3 ~iL~v~nlsk~yg---------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~   73 (254)
T d1g6ha_           3 EILRTENIVKYFG---------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP   73 (254)
T ss_dssp             EEEEEEEEEEEET---------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred             ceEEEEEEEEEEC---------CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhH
Confidence            3799999999994         5789999999999999999999999999999999999999999999999997643221


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--------------CC--CCH---HHHHHHHHHcCCC--
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--------------AG--IDP---QRRAELIKVLDID--  166 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~--~~~---~~~~~~l~~l~l~--  166 (348)
                      .          ...+..+++++|....+..+++.+++ ++.              ..  ...   +++.++++.+++.  
T Consensus        74 ~----------~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  143 (254)
T d1g6ha_          74 A----------ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL  143 (254)
T ss_dssp             H----------HHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG
T ss_pred             H----------HHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchh
Confidence            0          11233466776666666666665433 211              11  111   3455678888875  


Q ss_pred             cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938          167 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  246 (348)
Q Consensus       167 ~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~  246 (348)
                      .++++++|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++ +.|+|||+||||++++.++||||++
T Consensus       144 ~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~-~~g~til~vsHdl~~~~~~~Drv~v  222 (254)
T d1g6ha_         144 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK-AKGITFLIIEHRLDIVLNYIDHLYV  222 (254)
T ss_dssp             TTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECSCCSTTGGGCSEEEE
T ss_pred             ccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHH-HCCCEEEEEeCcHHHHHHhCCEEEE
Confidence            367899999999999999999999999999999999999999999999999986 4599999999999999999999999


Q ss_pred             EcCCEEeeecChhHHHH
Q 018938          247 VAHGKLQLAMPMDKVKE  263 (348)
Q Consensus       247 l~~G~i~~~g~~~~~~~  263 (348)
                      |++|+|++.|+++++..
T Consensus       223 m~~G~iv~~g~~~e~~~  239 (254)
T d1g6ha_         223 MFNGQIIAEGRGEEEIK  239 (254)
T ss_dssp             EETTEEEEEEESHHHHH
T ss_pred             EeCCEEEEEecHHHHhh
Confidence            99999999999988764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-53  Score=384.06  Aligned_cols=215  Identities=21%  Similarity=0.317  Sum_probs=178.0

Q ss_pred             EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938           31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT  110 (348)
Q Consensus        31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~  110 (348)
                      |+++||+|+|++       +..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...    
T Consensus         2 I~~~nvsf~Y~~-------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~----   70 (241)
T d2pmka1           2 ITFRNIRFRYKP-------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA----   70 (241)
T ss_dssp             EEEEEEEEESST-------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS----
T ss_pred             eEEEEEEEEeCC-------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEeccc----
Confidence            789999999964       356799999999999999999999999999999999999999999999999875321    


Q ss_pred             ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC---------C----cCccCCCCCHH
Q 018938          111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI---------D----LSWRMHKVSDG  177 (348)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSgG  177 (348)
                             -...+++.++|++|+..++.....+++.++....+.++..+.++..++         .    ....+..||||
T Consensus        71 -------~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGG  143 (241)
T d2pmka1          71 -------DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG  143 (241)
T ss_dssp             -------CHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHH
T ss_pred             -------chhhhhceEEEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHH
Confidence                   123467788999887665544444455555545555555544444332         1    13456899999


Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      |||||+|||||+.+|+|||||||||+||+.+...+++.|+++.+  ++|||+|||+++.+. .||+|++|++|+|++.|+
T Consensus       144 q~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~  220 (241)
T d2pmka1         144 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGK  220 (241)
T ss_dssp             HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGGGGT-TSSEEEEEETTEEEEEEC
T ss_pred             HHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHHHHH-hCCEEEEEECCEEEEECC
Confidence            99999999999999999999999999999999999999999853  889999999999885 699999999999999999


Q ss_pred             hhHHHHhhh
Q 018938          258 MDKVKEASK  266 (348)
Q Consensus       258 ~~~~~~~~~  266 (348)
                      ++++++.+.
T Consensus       221 ~~ell~~~~  229 (241)
T d2pmka1         221 HKELLSEPE  229 (241)
T ss_dssp             HHHHHHSTT
T ss_pred             HHHHHhCCC
Confidence            999987543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=6.2e-54  Score=385.07  Aligned_cols=211  Identities=21%  Similarity=0.318  Sum_probs=180.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|++ ++.|+|+         ... + ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.++|+++..... 
T Consensus         2 ~l~v-~~~k~~g---------~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~-   67 (240)
T d2onka1           2 FLKV-RAEKRLG---------NFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP-   67 (240)
T ss_dssp             CEEE-EEEEEET---------TEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT-
T ss_pred             EEEE-EEEEEEC---------CEE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCH-
Confidence            4788 6789994         333 4 7999995 68999999999999999999999999999999999997643211 


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRRRV  182 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv  182 (348)
                                  .++.++|++|...+++.+++.++ .+++.....    +++.++++.+++.  .++++.+|||||||||
T Consensus        68 ------------~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRv  135 (240)
T d2onka1          68 ------------ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV  135 (240)
T ss_dssp             ------------TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHH
T ss_pred             ------------HHcCceeeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHH
Confidence                        13567888777767767776654 455544432    4567888889986  4788999999999999


Q ss_pred             HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938          183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK  262 (348)
Q Consensus       183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  262 (348)
                      +|||||+++|++|||||||+||||.++..++++|++++++.|.|||+||||++++.++||||++|++|++++.|+++++.
T Consensus       136 aiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~  215 (240)
T d2onka1         136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHh
Confidence            99999999999999999999999999999999999998888999999999999999999999999999999999999998


Q ss_pred             Hhhh
Q 018938          263 EASK  266 (348)
Q Consensus       263 ~~~~  266 (348)
                      +.+.
T Consensus       216 ~~~~  219 (240)
T d2onka1         216 SAKN  219 (240)
T ss_dssp             HSCC
T ss_pred             cCCC
Confidence            7544

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-53  Score=386.55  Aligned_cols=218  Identities=22%  Similarity=0.319  Sum_probs=176.8

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|++.      .+..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++....  
T Consensus        11 ~I~~~nvsf~Y~~~------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~--   82 (251)
T d1jj7a_          11 LVQFQDVSFAYPNR------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE--   82 (251)
T ss_dssp             CEEEEEEEECCTTS------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC--
T ss_pred             eEEEEEEEEECCCC------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhh--
Confidence            59999999999641      2357999999999999999999999999999999999999999999999998763211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccC-CCCHHHHH---------HHHHHcC--CC--cCccCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA-GIDPQRRA---------ELIKVLD--ID--LSWRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------~~l~~l~--l~--~~~~~~~LS  175 (348)
                               ...+++.+++++|+..++.....+++.++.. ........         +.++.+.  ++  .++.+.+||
T Consensus        83 ---------~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LS  153 (251)
T d1jj7a_          83 ---------HRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLS  153 (251)
T ss_dssp             ---------HHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSC
T ss_pred             ---------hHHHHHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCC
Confidence                     1346678888887776654443445555533 22222222         2222231  11  245678999


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+++|+|||||||||+||+.++..+++.|.++.++.++|||+||||++.+. .||||++|++|+|++.
T Consensus       154 GGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~  232 (251)
T d1jj7a_         154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREG  232 (251)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEE
T ss_pred             hhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999987777999999999999885 5999999999999999


Q ss_pred             cChhHHHHhh
Q 018938          256 MPMDKVKEAS  265 (348)
Q Consensus       256 g~~~~~~~~~  265 (348)
                      |+++++.+..
T Consensus       233 Gt~~eLl~~~  242 (251)
T d1jj7a_         233 GTHQQLMEKK  242 (251)
T ss_dssp             ECHHHHHHHT
T ss_pred             CCHHHHHhCC
Confidence            9999998753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.3e-53  Score=386.37  Aligned_cols=213  Identities=19%  Similarity=0.329  Sum_probs=173.5

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      ||+++||+|+|++        .+++|+||||+|++||++||+||||||||||+++|+|++.|++|+|.++|.++....  
T Consensus         1 mle~knvsf~Y~~--------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~--   70 (242)
T d1mv5a_           1 MLSARHVDFAYDD--------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNIS--   70 (242)
T ss_dssp             CEEEEEEEECSSS--------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTS--
T ss_pred             CEEEEEEEEECCC--------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEecccc--
Confidence            5899999999963        467999999999999999999999999999999999999999999999998763211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccC-CCCHHHHHHHHHHcCCC---------c----CccCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA-GIDPQRRAELIKVLDID---------L----SWRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~---------~----~~~~~~LS  175 (348)
                               ...+++.++|++|+..++.....+++.++.. ....+...+.++..++.         .    .....+||
T Consensus        71 ---------~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LS  141 (242)
T d1mv5a_          71 ---------LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS  141 (242)
T ss_dssp             ---------CSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC
T ss_pred             ---------HHHHHhheEEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCC
Confidence                     1234567888877766555533334334332 23445545555543321         1    12346799


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|+|||||||||+||+.++..+++.|+++.  .|+|||+||||++.+. .||||++|++|+|++.
T Consensus       142 GGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~  218 (242)
T d1mv5a_         142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLSTIV-DADKIYFIEKGQITGS  218 (242)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHHHHH-HCSEEEEEETTEECCC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHH-hCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999985  3899999999999886 5999999999999999


Q ss_pred             cChhHHHHh
Q 018938          256 MPMDKVKEA  264 (348)
Q Consensus       256 g~~~~~~~~  264 (348)
                      |+++++.+.
T Consensus       219 G~~~eLl~~  227 (242)
T d1mv5a_         219 GKHNELVAT  227 (242)
T ss_dssp             SCHHHHHHH
T ss_pred             CCHHHHHhC
Confidence            999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=9.2e-53  Score=383.09  Aligned_cols=215  Identities=24%  Similarity=0.329  Sum_probs=178.4

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      -|+++||+|+|++       ...++|+||||+|++||++||+||||||||||+++|+|++.|++|+|.++|.++....  
T Consensus        13 ~I~~~nvsf~Y~~-------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~--   83 (253)
T d3b60a1          13 DLEFRNVTFTYPG-------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT--   83 (253)
T ss_dssp             CEEEEEEEECSSS-------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC--
T ss_pred             EEEEEEEEEEeCC-------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhh--
Confidence            4999999999964       3467999999999999999999999999999999999999999999999998753211  


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc-CCCCHHHHHHHHHHcCC-----------C--cCccCCCCC
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AGIDPQRRAELIKVLDI-----------D--LSWRMHKVS  175 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LS  175 (348)
                               ...+++.++|++++..++.....++..++. ...+.+++.++++..++           +  ....+.+||
T Consensus        84 ---------~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LS  154 (253)
T d3b60a1          84 ---------LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS  154 (253)
T ss_dssp             ---------HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred             ---------hhhhhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcC
Confidence                     134667788888776666555556665553 23455555544443332           1  234578899


Q ss_pred             HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938          176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA  255 (348)
Q Consensus       176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~  255 (348)
                      |||||||+|||||+.+|+|||||||||+||+.++..+++.|+++.+  ++|||+||||++.+. .||+|++|++|+|++.
T Consensus       155 GGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~  231 (253)
T d3b60a1         155 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-QADEIVVVEDGIIVER  231 (253)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTT-TCSEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHH-hCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999999853  789999999999885 6999999999999999


Q ss_pred             cChhHHHHhh
Q 018938          256 MPMDKVKEAS  265 (348)
Q Consensus       256 g~~~~~~~~~  265 (348)
                      |+++++++..
T Consensus       232 G~~~eLl~~~  241 (253)
T d3b60a1         232 GTHSELLAQH  241 (253)
T ss_dssp             ECHHHHHHHT
T ss_pred             CCHHHHHhCC
Confidence            9999998753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=5.5e-52  Score=377.66  Aligned_cols=215  Identities=21%  Similarity=0.340  Sum_probs=180.3

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+|+|++       +..++|+||||+|++||++||+||||||||||+++|+|++.|++|+|.++|.++...   
T Consensus        16 ~I~~~nvsf~Y~~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~---   85 (255)
T d2hyda1          16 RIDIDHVSFQYND-------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF---   85 (255)
T ss_dssp             CEEEEEEEECSCS-------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS---
T ss_pred             EEEEEEEEEEeCC-------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccC---
Confidence            4999999999964       346899999999999999999999999999999999999999999999999875321   


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCCH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVSD  176 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSg  176 (348)
                              ....+++.++|++|+..++.....+++.++......+++.++++..++.         .    .....+|||
T Consensus        86 --------~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSg  157 (255)
T d2hyda1          86 --------LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG  157 (255)
T ss_dssp             --------CHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred             --------CHHHhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCH
Confidence                    1235677888988776665544445555665555666666666665541         1    234568999


Q ss_pred             HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      ||||||+|||||+++|++||||||||+||+.++..+++.|.++.  .++|||+|||+++.+. .||+|++|++|+|++.|
T Consensus       158 Gq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G  234 (255)
T d2hyda1         158 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTIT-HADKIVVIENGHIVETG  234 (255)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEC
Confidence            99999999999999999999999999999999999999999875  3789999999999885 69999999999999999


Q ss_pred             ChhHHHHhh
Q 018938          257 PMDKVKEAS  265 (348)
Q Consensus       257 ~~~~~~~~~  265 (348)
                      +++++++..
T Consensus       235 ~~~eLl~~~  243 (255)
T d2hyda1         235 THRELIAKQ  243 (255)
T ss_dssp             CHHHHHHTT
T ss_pred             CHHHHHhCC
Confidence            999998754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-50  Score=365.24  Aligned_cols=212  Identities=19%  Similarity=0.268  Sum_probs=170.6

Q ss_pred             CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938           29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA  108 (348)
Q Consensus        29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~  108 (348)
                      .+|+++|++++|             +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++.....
T Consensus         2 ~il~~~dv~~~~-------------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~   67 (231)
T d1l7vc_           2 IVMQLQDVAEST-------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSA   67 (231)
T ss_dssp             EEEEEEEECCTT-------------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCH
T ss_pred             eEEEEECcccCc-------------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCH
Confidence            368999997654             699999999999999999999999999999999975 789999999986532111


Q ss_pred             ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC-CCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHH
Q 018938          109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA-GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQI  184 (348)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~l  184 (348)
                                 ..+....++..+........+..++. ++.. ....+...++++.+++.  .++++.+|||||||||+|
T Consensus        68 -----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~i  136 (231)
T d1l7vc_          68 -----------TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRL  136 (231)
T ss_dssp             -----------HHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred             -----------HHHHhhceeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHH
Confidence                       12223334444433322233333322 2222 23456677888888885  467899999999999999


Q ss_pred             HHHHcc-------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938          185 CMGLLK-------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP  257 (348)
Q Consensus       185 AraL~~-------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~  257 (348)
                      ||||++       +|+||||||||+|||+.++..++++|+++++ .|+|||+||||++++..+|||+++|++|++++.|+
T Consensus       137 A~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~  215 (231)
T d1l7vc_         137 AAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR  215 (231)
T ss_dssp             HHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSB
T ss_pred             HHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECC
Confidence            999997       7799999999999999999999999999975 59999999999999999999999999999999999


Q ss_pred             hhHHHHhhh
Q 018938          258 MDKVKEASK  266 (348)
Q Consensus       258 ~~~~~~~~~  266 (348)
                      ++++++.+.
T Consensus       216 ~~ev~~~~~  224 (231)
T d1l7vc_         216 REEVLTPPN  224 (231)
T ss_dssp             HHHHSCHHH
T ss_pred             HHHHhCChH
Confidence            999986543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4.2e-47  Score=334.55  Aligned_cols=190  Identities=22%  Similarity=0.338  Sum_probs=154.1

Q ss_pred             eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938           30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL  109 (348)
Q Consensus        30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~  109 (348)
                      .|+++||+++|+          +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..    
T Consensus         2 ~lev~~ls~~y~----------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~----   67 (200)
T d1sgwa_           2 KLEIRDLSVGYD----------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK----   67 (200)
T ss_dssp             EEEEEEEEEESS----------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG----
T ss_pred             eEEEEEEEEEeC----------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH----
Confidence            489999999993          479999999999999999999999999999999999999999999999986531    


Q ss_pred             cccCcccccchhhhhhhhhcCCCccccccchHHHHHh---cc--CCCCHHHHHHHHHHcCC-CcCccCCCCCHHHHHHHH
Q 018938          110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF---GV--AGIDPQRRAELIKVLDI-DLSWRMHKVSDGQRRRVQ  183 (348)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~l~~l~l-~~~~~~~~LSgGqrQRv~  183 (348)
                                  .+..++|.+++......++.++++.   ..  ...+..++.+.++.+++ +..+++.+|||||||||+
T Consensus        68 ------------~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~  135 (200)
T d1sgwa_          68 ------------VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQ  135 (200)
T ss_dssp             ------------GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHH
T ss_pred             ------------hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHH
Confidence                        1233445544444444444444321   11  12345666777888876 356788999999999999


Q ss_pred             HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938          184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH  249 (348)
Q Consensus       184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~  249 (348)
                      |||||+.+|++|||||||+|||+.++..+++.|.++.++.+.+||.++|+++    +||++.+|++
T Consensus       136 ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~----~~D~~~~l~~  197 (200)
T d1sgwa_         136 LASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS----YCDVNENLHK  197 (200)
T ss_dssp             HHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT----TSSEEEEGGG
T ss_pred             HHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechhh----hcchhhheee
Confidence            9999999999999999999999999999999999998887777777777753    7999998864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.6e-47  Score=351.02  Aligned_cols=186  Identities=24%  Similarity=0.332  Sum_probs=143.6

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF  131 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (348)
                      +++|+||||+|++||++||+||||||||||+++|+|++.|++|+|.++|+..                        |+++
T Consensus        49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~------------------------~v~Q  104 (281)
T d1r0wa_          49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVS------------------------FCSQ  104 (281)
T ss_dssp             CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEE------------------------EECS
T ss_pred             CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEE------------------------EEec
Confidence            6899999999999999999999999999999999999999999999988532                        2222


Q ss_pred             CccccccchHHHHHhccCCCCHHHHHHHHHHcCC-------C------cCccCCCCCHHHHHHHHHHHHHccCCcEEEee
Q 018938          132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-------D------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLD  198 (348)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~------~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLD  198 (348)
                      ...++.....+++.++. .........+++...+       .      ..+...+|||||||||+|||||+++|+|||||
T Consensus       105 ~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLD  183 (281)
T d1r0wa_         105 FSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD  183 (281)
T ss_dssp             SCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred             cccccCceeeccccccc-cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhc
Confidence            22222222233333332 2233333333333221       1      12345689999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHHh
Q 018938          199 EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA  264 (348)
Q Consensus       199 EPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  264 (348)
                      |||++||+.++..+++.+.... ..++|+|+|||+++.+ ++||||++|++|+|++.|+++++...
T Consensus       184 EPts~LD~~~~~~i~~~~~~~~-~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~~~  247 (281)
T d1r0wa_         184 SPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQSL  247 (281)
T ss_dssp             SCCCSSCHHHHHHHHHHCCCCC-TTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CccccCCHHHHHHHHHHHHHHh-hCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHhcc
Confidence            9999999999999987644333 3488999999999877 57999999999999999999998753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.77  E-value=2.6e-20  Score=157.92  Aligned_cols=160  Identities=13%  Similarity=0.017  Sum_probs=101.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF  146 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (348)
                      .++|+||||||||||+++|+|.+.++.|.+.+.+........     ...+.      ...+....... ....... ..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~-----~~~~~------~~~~~~~~~~~-~~~~~~~-~~   68 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK-----RTGFR------IITTEGKKKIF-SSKFFTS-KK   68 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-----------CCEEE------EEETTCCEEEE-EETTCCC-SS
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHH-----hhhhh------hhhhhHHHHHH-hhhhhhh-hh
Confidence            479999999999999999999999999988887654321100     00000      00000000000 0000000 00


Q ss_pred             ccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 018938          147 GVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT  226 (348)
Q Consensus       147 ~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~t  226 (348)
                      ....            +  ..+....++|+|++++.++++++..+|++|++|||....+  ....+.+.+.++.++.+.+
T Consensus        69 ~~~~------------~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~  132 (178)
T d1ye8a1          69 LVGS------------Y--GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVN  132 (178)
T ss_dssp             EETT------------E--EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSE
T ss_pred             hhhh------------h--hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCCCE
Confidence            0000            0  0111223578999999999999999999999999854432  3345666666666666899


Q ss_pred             EEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938          227 IIYATHIFDGLENWPSHIVYVAHGKLQLAM  256 (348)
Q Consensus       227 viivtHd~~~~~~~~d~v~~l~~G~i~~~g  256 (348)
                      +|+++|+.. ...+|+++..+.+|+++..+
T Consensus       133 il~~~h~~~-~~~~~~~i~~~~~~~i~~v~  161 (178)
T d1ye8a1         133 VVATIPIRD-VHPLVKEIRRLPGAVLIELT  161 (178)
T ss_dssp             EEEECCSSC-CSHHHHHHHTCTTCEEEECC
T ss_pred             EEEEEccHH-HHHhhceEEEEeCCEEEEEC
Confidence            999999975 45689999999999998654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=1e-11  Score=113.22  Aligned_cols=77  Identities=22%  Similarity=0.291  Sum_probs=64.9

Q ss_pred             CCCCCHHHHHHHHHHHH----HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938          171 MHKVSDGQRRRVQICMG----LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  246 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAra----L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~  246 (348)
                      +..+|+|||+...++..    ....|.++++|||-++|+|.....+.++|++..+  +.-||++||....+. .+|+++.
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~~-~~d~~~~  293 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIVME-AADLLHG  293 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGGG-GCSEEEE
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHH-hcccEEE
Confidence            56799999999877665    3567899999999999999999999999998753  578999999999886 5798865


Q ss_pred             --EcCC
Q 018938          247 --VAHG  250 (348)
Q Consensus       247 --l~~G  250 (348)
                        +.+|
T Consensus       294 v~~~~g  299 (308)
T d1e69a_         294 VTMVNG  299 (308)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence              5556

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=3.1e-10  Score=107.05  Aligned_cols=75  Identities=19%  Similarity=0.298  Sum_probs=62.5

Q ss_pred             CCCCCHHHHHHHHHHHHH----ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938          171 MHKVSDGQRRRVQICMGL----LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY  246 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL----~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~  246 (348)
                      ...||||||.+++||..+    ..++++++||||+++||+..+..+.++|.++. ..+.-+|++||+...+. .||+++.
T Consensus       330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~-~~~~Q~I~iTH~~~~~~-~ad~~~~  407 (427)
T d1w1wa_         330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NPDLQFIVISLKNTMFE-KSDALVG  407 (427)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred             hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHH-hcccEEE
Confidence            356899999998877554    46778999999999999999999999998874 34567999999988765 6899775


Q ss_pred             E
Q 018938          247 V  247 (348)
Q Consensus       247 l  247 (348)
                      +
T Consensus       408 V  408 (427)
T d1w1wa_         408 V  408 (427)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.65  E-value=1.4e-07  Score=82.11  Aligned_cols=61  Identities=21%  Similarity=0.277  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                      |-+++.-+.-.+.+..++|+||+..|=++.....+...+-+...+.+..++++||..+...
T Consensus       101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            3344444444456778999999999999988877655544444456889999999987654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=2.2e-07  Score=81.25  Aligned_cols=51  Identities=20%  Similarity=0.260  Sum_probs=39.4

Q ss_pred             HccCCcEEEeeccCCCCCHHHHHHHH-HHHHHHHHhcCcEEEEEecChhhhh
Q 018938          188 LLKPFKVLLLDEITVDLDVLARADLL-RFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       188 L~~~P~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                      -+.+..++|+||+..|=++.....+. ..+..+....+..+|++||..+...
T Consensus       117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            45666799999999999999888875 4566665555678999999876554

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=5.6e-05  Score=66.21  Aligned_cols=46  Identities=13%  Similarity=0.264  Sum_probs=36.4

Q ss_pred             HccCCcEEEeeccCC-----CCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938          188 LLKPFKVLLLDEITV-----DLDVLARADLLRFLRKECEERGATIIYATHI  233 (348)
Q Consensus       188 L~~~P~lLlLDEPts-----gLD~~~~~~l~~~l~~l~~~~g~tviivtHd  233 (348)
                      -..+|+++|+|--++     --|......++..|+.+++..+++||++.|-
T Consensus       129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence            457999999994432     1266777788889999988889999999994

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=5.3e-07  Score=74.94  Aligned_cols=33  Identities=30%  Similarity=0.271  Sum_probs=29.2

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+++.+|++.+| +++|+|||||||||+|.+|.-
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            467888888887 999999999999999999963

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.74  E-value=3.8e-05  Score=67.62  Aligned_cols=35  Identities=29%  Similarity=0.418  Sum_probs=29.5

Q ss_pred             CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      .+.|+++..=+.+|+++.|.|++|+|||||+.-++
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            45677766558999999999999999999987665

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.65  E-value=0.00014  Score=62.36  Aligned_cols=60  Identities=7%  Similarity=0.001  Sum_probs=43.3

Q ss_pred             ccCCcEEEeecc---CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh----------hhhhhhCCEEEEEc
Q 018938          189 LKPFKVLLLDEI---TVDLDVLARADLLRFLRKECEERGATIIYATHIF----------DGLENWPSHIVYVA  248 (348)
Q Consensus       189 ~~~P~lLlLDEP---tsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~----------~~~~~~~d~v~~l~  248 (348)
                      -.+|++++.|--   ..+.+..........|..++++.+.++++++|--          ..+..+||-++.|+
T Consensus       114 ~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~  186 (242)
T d1tf7a2         114 DFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ  186 (242)
T ss_dssp             TTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred             hcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence            357899998854   3445676666677777777788899999998842          23456788888875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=1.3e-05  Score=66.39  Aligned_cols=24  Identities=25%  Similarity=0.578  Sum_probs=22.2

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      |.+++|+||||||||||++.|...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            889999999999999999999764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.4e-05  Score=64.62  Aligned_cols=22  Identities=32%  Similarity=0.327  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+|++|||||||++.|+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7899999999999999999854

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=2.7e-05  Score=67.03  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=25.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV   96 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i   96 (348)
                      +|...+++|+||+|||||+|.|.|-.....|.|
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v  126 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV  126 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence            689999999999999999999998655555554

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.48  E-value=2.2e-05  Score=63.68  Aligned_cols=25  Identities=36%  Similarity=0.590  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .|.++.|.||+||||||+.+.|+..
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999999874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=1.2e-05  Score=65.45  Aligned_cols=32  Identities=25%  Similarity=0.272  Sum_probs=25.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCceEEE
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV   98 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i   98 (348)
                      .+.|+||+|+|||||++.++..+....+.+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~   34 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG   34 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence            57899999999999999999877655544443

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=2.9e-05  Score=62.78  Aligned_cols=26  Identities=19%  Similarity=0.431  Sum_probs=23.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.+.++.|+||+||||||+.+.|+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45778999999999999999999863

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.41  E-value=3.2e-05  Score=62.68  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+|-++.|+|++||||||+.+.|+-
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999999984

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=5e-05  Score=70.31  Aligned_cols=28  Identities=21%  Similarity=0.544  Sum_probs=23.1

Q ss_pred             eeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           59 TLTLNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      ++.+..+.+.+|+|||||||||+|.+|+
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3444556699999999999999999984

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.34  E-value=3.2e-05  Score=62.82  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKHMV   91 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~~~   91 (348)
                      .+++|+|++|||||||++-|...+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            37899999999999999887765443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.30  E-value=6.3e-05  Score=60.81  Aligned_cols=25  Identities=32%  Similarity=0.610  Sum_probs=22.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|-.+.|+||+||||||+.+.|+-
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4677899999999999999999985

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=6.6e-05  Score=63.64  Aligned_cols=24  Identities=21%  Similarity=0.480  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +|.++.|+||||||||||++.|.-
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999999998864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.28  E-value=0.002  Score=53.93  Aligned_cols=59  Identities=17%  Similarity=0.090  Sum_probs=39.0

Q ss_pred             cCCcEEEeeccCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEecChh---------hhhhhCCEEEEEc
Q 018938          190 KPFKVLLLDEITVDL----DVLARADLLRFLRKECEERGATIIYATHIFD---------GLENWPSHIVYVA  248 (348)
Q Consensus       190 ~~P~lLlLDEPtsgL----D~~~~~~l~~~l~~l~~~~g~tviivtHd~~---------~~~~~~d~v~~l~  248 (348)
                      .+|+++++|=-+.-.    +.......+..+.+.+++.+.|+++++|...         ....++|.++.+.
T Consensus       124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~  195 (242)
T d1tf7a1         124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR  195 (242)
T ss_dssp             HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence            479999999544322    4444445555555666778999999988654         3445677777664

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.27  E-value=2.7e-05  Score=67.25  Aligned_cols=34  Identities=18%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK   97 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~   97 (348)
                      +|...+++|+||+|||||+|.|.|-.....|.|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5889999999999999999999986544445443

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.0022  Score=56.04  Aligned_cols=27  Identities=26%  Similarity=0.309  Sum_probs=23.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      =++.|.++-|.||+|||||||+-.++-
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHH
Confidence            578999999999999999999866554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.27  E-value=5.8e-05  Score=61.24  Aligned_cols=23  Identities=13%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ..++|+||.|||||||.+.|+-.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999863

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.25  E-value=7.9e-05  Score=60.09  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.4

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ..++.|.|++||||||+.+.|+-.+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999998754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.21  E-value=0.00064  Score=59.00  Aligned_cols=21  Identities=43%  Similarity=0.811  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.|.||.|+|||+|.+.|+..
T Consensus        45 iLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCCChhHHHHHHHHH
Confidence            689999999999999999973

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.20  E-value=7.4e-05  Score=61.56  Aligned_cols=22  Identities=23%  Similarity=0.231  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++||.|++|||||||.+.|.-.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=8.1e-05  Score=58.97  Aligned_cols=21  Identities=43%  Similarity=0.618  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.|+||+||||||+.+.|+-
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            477899999999999999975

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.17  E-value=8.3e-05  Score=58.87  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +++.|.|++|||||||.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999997753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.15  E-value=0.00011  Score=59.59  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+++|.|+.||||||+.+.|+-.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.09  E-value=0.00011  Score=58.95  Aligned_cols=21  Identities=43%  Similarity=0.612  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+||.||||||+.+.|+-
T Consensus         6 ~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999964

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.08  E-value=0.00013  Score=58.47  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++.|.||+||||||+.+.|+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=7.3e-05  Score=61.58  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +|-++.|+|++||||||+.+.|+-
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            577999999999999999999974

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.01  E-value=0.00014  Score=60.38  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.|+|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999985

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00018  Score=59.52  Aligned_cols=21  Identities=33%  Similarity=0.613  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.|+||+|||||||++.|+-.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999998653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.001  Score=58.28  Aligned_cols=26  Identities=31%  Similarity=0.512  Sum_probs=22.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +...-+.|.||+|+|||+|.+.|++.
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHH
Confidence            34455889999999999999999984

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0002  Score=60.30  Aligned_cols=22  Identities=18%  Similarity=0.179  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++||.|++|||||||.+.|+-.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988643

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.90  E-value=0.00022  Score=60.79  Aligned_cols=21  Identities=38%  Similarity=0.626  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +++|+|+.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            689999999999999999964

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.86  E-value=0.00028  Score=57.16  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.|+|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0003  Score=57.99  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ..+.|+||||+|||||++.|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998874

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.84  E-value=0.0036  Score=54.73  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=24.6

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      =|+.|.++-|.||+|||||||+-.++..
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHH
Confidence            4789999999999999999999777653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.00025  Score=58.98  Aligned_cols=20  Identities=45%  Similarity=0.667  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+||||||||||++.|+-
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.83  E-value=0.00022  Score=58.18  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      -++|+|+.|+|||||++.|+|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999984

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.79  E-value=0.00024  Score=57.51  Aligned_cols=22  Identities=32%  Similarity=0.656  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|++|||||||++.+.|-
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999885

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.77  E-value=0.00039  Score=57.33  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=22.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHh
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      ++|-.+.|+||.||||||+.+.|+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            467788999999999999999998

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.77  E-value=0.00031  Score=56.63  Aligned_cols=20  Identities=25%  Similarity=0.577  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      +.|+|++||||||+.+.|+-
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999975

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.77  E-value=0.0003  Score=58.22  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=20.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+++|+||.||||||+.+.|+-
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00035  Score=56.66  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+|..|+|||||++.|+|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.0015  Score=56.83  Aligned_cols=21  Identities=38%  Similarity=0.635  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.|.||.|+|||+|.+.++..
T Consensus        41 iLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEecCCCCCchHHHHHHHHH
Confidence            789999999999999999973

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.76  E-value=0.0002  Score=58.81  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +||+|+.++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999873

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00046  Score=56.82  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=23.6

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +++|+++.|.||+|||||||+--++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999877764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.00037  Score=56.78  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|+|..|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999984

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00032  Score=55.36  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.70  E-value=0.00041  Score=56.69  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+||+|+.|+|||||++.|+|-
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4799999999999999999984

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00039  Score=57.60  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+++|+||.||||||+.+.|+--
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999863

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.70  E-value=0.00031  Score=58.28  Aligned_cols=26  Identities=31%  Similarity=0.378  Sum_probs=23.1

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +..+.++.|+||.||||||+.+.|+-
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999999975

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.69  E-value=0.00036  Score=56.59  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.|+|++||||||+.+.|+-
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999974

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.65  E-value=0.00038  Score=54.93  Aligned_cols=22  Identities=50%  Similarity=0.579  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|||||||++.+++-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999998763

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.64  E-value=0.00031  Score=57.31  Aligned_cols=21  Identities=33%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +||+|..|+|||||++.|+|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999984

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.63  E-value=0.00044  Score=56.16  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++.|.|++||||||+.+.|+..+
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            67889999999999999998654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.62  E-value=0.00041  Score=55.11  Aligned_cols=43  Identities=12%  Similarity=0.058  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh
Q 018938          178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE  222 (348)
Q Consensus       178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~  222 (348)
                      +.-.-.++..++.+..+-++  |+|+.+-.+..++++.|.+..++
T Consensus       125 ~~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         125 SEMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHHHHh
Confidence            33444455556666666666  89999999888888877665443

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.59  E-value=0.00038  Score=57.38  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++.|+||.||||||+.+.|+-
T Consensus         5 ~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999974

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00047  Score=54.88  Aligned_cols=22  Identities=27%  Similarity=0.726  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.|+|.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00054  Score=56.50  Aligned_cols=21  Identities=33%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++.|+||.||||||..+.|+-
T Consensus         3 iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999974

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=0.0005  Score=55.43  Aligned_cols=20  Identities=40%  Similarity=0.615  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      +.|+|+.||||||+.+.|+-
T Consensus         4 IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56889999999999999975

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00043  Score=57.51  Aligned_cols=22  Identities=23%  Similarity=0.579  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|||||||++.|+|-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999874

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.57  E-value=0.00064  Score=55.54  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHh
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      +.-+++.++|++||||||+.+-++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            455799999999999999999875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.57  E-value=0.00055  Score=55.62  Aligned_cols=21  Identities=38%  Similarity=0.433  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.|+||.||||||+.+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999964

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.54  E-value=0.00053  Score=56.51  Aligned_cols=20  Identities=25%  Similarity=0.454  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 018938           67 RCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~   86 (348)
                      ++||.|+.||||||+.+.|.
T Consensus         5 IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999985

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.52  E-value=0.00056  Score=57.82  Aligned_cols=24  Identities=46%  Similarity=0.724  Sum_probs=19.7

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++.+++++||+|+||||.+-=|+-
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            567999999999999998654554

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.51  E-value=0.00047  Score=62.32  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=26.3

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV   98 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i   98 (348)
                      |.-+.|.|+.|||||||++.|++.+++..--|++
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            4458999999999999999999987654433333

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.47  E-value=0.00074  Score=54.00  Aligned_cols=23  Identities=52%  Similarity=0.794  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|+|+.|||||||++.+.|-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999999853

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00041  Score=56.19  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.++|||||+|.|.|.
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999884

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.43  E-value=0.00076  Score=55.88  Aligned_cols=21  Identities=33%  Similarity=0.355  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++.++|.+|||||||.+.|+-
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999985

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.41  E-value=0.0008  Score=54.98  Aligned_cols=21  Identities=38%  Similarity=0.403  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.|+||.||||||+.+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999985

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.36  E-value=0.00061  Score=56.22  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=21.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      =+++|-|+.||||||+++.|+..+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999998743

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.34  E-value=0.00062  Score=58.78  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ..+.|.||.|||||||.+.|++.+
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999999854

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.00092  Score=55.85  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +++|.||.||||||+.+.|+-
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            889999999999999999974

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.34  E-value=0.00087  Score=56.55  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=22.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|-++.|+|.+|||||||.+.|.-
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999999863

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.32  E-value=0.016  Score=50.51  Aligned_cols=27  Identities=26%  Similarity=0.270  Sum_probs=23.2

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -++.|.++-|.||+|||||||+-.++.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHH
Confidence            578999999999999999999755543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00099  Score=55.75  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=22.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +|.+++|-|+-||||||+++.|.-
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999999875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.31  E-value=0.00081  Score=58.59  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|.+|+|||||+|.|.|-
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3889999999999999999995

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.29  E-value=0.00099  Score=55.91  Aligned_cols=21  Identities=33%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +++|-||.||||||+.+.|+-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578889999999999999985

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.00097  Score=55.81  Aligned_cols=21  Identities=38%  Similarity=0.482  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++||+|+.||||||+.+++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999863

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.001  Score=55.98  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=22.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++|-+++|-|+-||||||+.+.|.-.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999998653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.27  E-value=0.001  Score=53.58  Aligned_cols=22  Identities=41%  Similarity=0.587  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|..|||||||++.|.|-
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999884

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.00097  Score=54.21  Aligned_cols=21  Identities=38%  Similarity=0.452  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.|+||.||||||..+.|+-
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999974

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.26  E-value=0.0011  Score=53.97  Aligned_cols=21  Identities=43%  Similarity=0.578  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.|+||.||||||+.+.|+-
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.00079  Score=57.00  Aligned_cols=22  Identities=41%  Similarity=0.528  Sum_probs=18.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+++++||+|+||||.+-=|+-
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999998755553

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.14  E-value=0.0012  Score=55.88  Aligned_cols=52  Identities=23%  Similarity=0.253  Sum_probs=31.9

Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh-hhhCCEEE
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL-ENWPSHIV  245 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~-~~~~d~v~  245 (348)
                      ++.++|+||- -.+-......+...+...  .....+|++|+....+ ..+.+|..
T Consensus       109 ~~~iilide~-d~~~~~~~~~ll~~l~~~--~~~~~~i~~~n~~~~i~~~l~sR~~  161 (231)
T d1iqpa2         109 SFKIIFLDEA-DALTQDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQSRCA  161 (231)
T ss_dssp             SCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred             CceEEeehhh-hhcchhHHHHHhhhcccC--CcceEEEeccCChhhchHhHhCccc
Confidence            6779999994 345555666666666543  2345677888777654 33444443

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0015  Score=53.24  Aligned_cols=21  Identities=38%  Similarity=0.532  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.|+||.||||||+.+.|+-
T Consensus         4 rIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999985

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0016  Score=54.80  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=23.2

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      +++|.++.|.||.|||||||.--++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            8899999999999999999997765

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.00088  Score=56.83  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=22.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++.+++|-|+-||||||+++.|+..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999998754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.09  E-value=0.0015  Score=53.96  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~G   87 (348)
                      =.++|+||.||||||+.+.|+-
T Consensus         7 mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999985

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.07  E-value=0.00037  Score=55.43  Aligned_cols=22  Identities=32%  Similarity=0.563  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|..|+|||||++.|+|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999984

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0016  Score=54.94  Aligned_cols=26  Identities=35%  Similarity=0.381  Sum_probs=23.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +|.+++|-|+-||||||+.+.|+-.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence            68999999999999999999998543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.05  E-value=0.0014  Score=53.45  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++|+|+..||||||++.|+|.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999984

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.03  E-value=0.0014  Score=52.49  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            368999999999999998865

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0016  Score=55.73  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+.|.||+|+||||++++|+..
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999974

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0014  Score=58.55  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++||.|++|||||||.+.|.-++
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHH
Confidence            89999999999999999887654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0017  Score=54.49  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++||+|..||||||..+++.-
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0014  Score=59.09  Aligned_cols=25  Identities=36%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ..-++||+||.|||||||+..++..
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0013  Score=54.77  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -++|+|+.|||||||++.+.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999986

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0017  Score=54.93  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.|.||+|+||||++++++-.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999999863

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0018  Score=52.20  Aligned_cols=20  Identities=25%  Similarity=0.602  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.86  E-value=0.002  Score=51.90  Aligned_cols=22  Identities=50%  Similarity=0.768  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999773

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.84  E-value=0.001  Score=58.86  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=17.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++||.|++||||||+.+.|.-.+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            79999999999999999886543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.83  E-value=0.0015  Score=55.20  Aligned_cols=24  Identities=29%  Similarity=0.315  Sum_probs=14.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ...+++++||+|+||||.+-=|+-
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999998654553

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.78  E-value=0.0022  Score=54.43  Aligned_cols=22  Identities=45%  Similarity=0.717  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+.+.||.|+||||+.++|+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            3679999999999999999864

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.77  E-value=0.002  Score=51.73  Aligned_cols=20  Identities=30%  Similarity=0.512  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++++|+.|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.73  E-value=0.0019  Score=54.63  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=18.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHh
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      +.-+++++||+|+||||.+-=|+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            44588999999999999865444

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.73  E-value=0.0025  Score=54.44  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.++.|.||.|+|||||++.++-
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHH
Confidence            456899999999999999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.71  E-value=0.0024  Score=53.76  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=19.0

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ..++.++||+|+||||.+-=|+-
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999998766664

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0027  Score=50.77  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|++|+|||||++.+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998775

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0023  Score=51.70  Aligned_cols=20  Identities=30%  Similarity=0.647  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|+.|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997765

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.68  E-value=0.0028  Score=50.93  Aligned_cols=27  Identities=30%  Similarity=0.254  Sum_probs=24.1

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ..++|.+++|.|+=|||||||.|.++.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence            346899999999999999999998874

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.0026  Score=58.93  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHhCCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++|+|..|+|||||+|.|.|.-
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999999953

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.63  E-value=0.0029  Score=53.68  Aligned_cols=24  Identities=21%  Similarity=0.381  Sum_probs=21.9

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHH
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKII   85 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i   85 (348)
                      +++|.++.|.||.|||||||.--+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            889999999999999999997644

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0027  Score=53.73  Aligned_cols=25  Identities=16%  Similarity=0.153  Sum_probs=23.1

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      |++|.++.|.||+|||||||.-.++
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH
Confidence            7899999999999999999987775

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.61  E-value=0.0027  Score=56.60  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=20.7

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.-+.++||+|||||+|.|+|+..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            345678999999999999999974

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0034  Score=51.09  Aligned_cols=21  Identities=38%  Similarity=0.512  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999988863

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.60  E-value=0.0031  Score=52.15  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +++|-|.-||||||+++.|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.58  E-value=0.0031  Score=52.96  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=22.9

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      +++|+++.|.|++|+|||||.--++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8899999999999999999986664

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0037  Score=50.07  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|..|+|||||++-+++
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999988776

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.55  E-value=0.0035  Score=49.96  Aligned_cols=20  Identities=20%  Similarity=0.468  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|+.|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999986664

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.004  Score=49.88  Aligned_cols=21  Identities=43%  Similarity=0.888  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++|+|+.|+|||||++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            789999999999999999885

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0043  Score=53.87  Aligned_cols=24  Identities=42%  Similarity=0.677  Sum_probs=20.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ..-+.|.||.|||||++.+.|+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            345789999999999999999974

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.0037  Score=49.87  Aligned_cols=20  Identities=35%  Similarity=0.586  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++++|.+|+|||||++.+++
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0033  Score=50.63  Aligned_cols=20  Identities=25%  Similarity=0.602  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|+.|+|||||++.+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.41  E-value=0.0036  Score=53.11  Aligned_cols=21  Identities=43%  Similarity=0.675  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.+.||.|+||||+.+++++.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            569999999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.40  E-value=0.0026  Score=51.65  Aligned_cols=22  Identities=50%  Similarity=0.643  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .++|+|+.|+|||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4779999999999999998763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.40  E-value=0.0032  Score=53.42  Aligned_cols=21  Identities=38%  Similarity=0.510  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++||+|...||||||++.|++
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHh
Confidence            699999999999999999987

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.39  E-value=0.0039  Score=56.07  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .-++||.||-|||||||+..+..
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHH
Confidence            45799999999999999998874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.36  E-value=0.0035  Score=50.93  Aligned_cols=20  Identities=25%  Similarity=0.614  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|..|+|||||++.+++
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0032  Score=50.25  Aligned_cols=21  Identities=14%  Similarity=0.283  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.004  Score=52.32  Aligned_cols=44  Identities=18%  Similarity=0.272  Sum_probs=31.3

Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  237 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~  237 (348)
                      ..+++|+||.- .+....+..+...+.+.  .....+++++++.+-+
T Consensus       101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~--~~~~~~i~~~~~~~~i  144 (224)
T d1sxjb2         101 KHKIVILDEAD-SMTAGAQQALRRTMELY--SNSTRFAFACNQSNKI  144 (224)
T ss_dssp             CCEEEEEESGG-GSCHHHHHTTHHHHHHT--TTTEEEEEEESCGGGS
T ss_pred             ceEEEEEeccc-ccchhHHHHHhhhcccc--ccceeeeeccCchhhh
Confidence            36799999964 56666777777777654  2356788888887765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0034  Score=50.37  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|.+|+|||||++-+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999987654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.005  Score=49.53  Aligned_cols=22  Identities=41%  Similarity=0.844  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHhCCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++|+|..|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            7899999999999999998753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.0045  Score=54.62  Aligned_cols=20  Identities=25%  Similarity=0.277  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 018938           67 RCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~   86 (348)
                      ++||-|+.|||||||.+.|.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHH
Confidence            78999999999999998774

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0056  Score=49.16  Aligned_cols=20  Identities=25%  Similarity=0.576  Sum_probs=17.4

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|++|+|||||++-+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999976654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0043  Score=49.76  Aligned_cols=21  Identities=29%  Similarity=0.635  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+++
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.004  Score=49.69  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++-+++
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0037  Score=49.65  Aligned_cols=21  Identities=19%  Similarity=0.404  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.22  E-value=0.0087  Score=48.86  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=26.1

Q ss_pred             ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      ..++.--+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            4566666666 67889999999999999987664

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.20  E-value=0.0045  Score=53.31  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -+.|.||.|||||+|.+.|+.
T Consensus        42 ~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            467999999999999999986

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.0054  Score=48.89  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|..|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0044  Score=49.42  Aligned_cols=20  Identities=25%  Similarity=0.587  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|..|+|||||++.+.+
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0041  Score=52.87  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=32.9

Q ss_pred             cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938          190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  237 (348)
Q Consensus       190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~  237 (348)
                      .+.+++|+||.- .|.......+.+.+.+..  ....+|++|++.+.+
T Consensus       130 ~~~~iiiide~d-~l~~~~~~~l~~~~e~~~--~~~~~Il~tn~~~~i  174 (252)
T d1sxje2         130 HRYKCVIINEAN-SLTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPI  174 (252)
T ss_dssp             -CCEEEEEECTT-SSCHHHHHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred             CCceEEEecccc-ccccccchhhhccccccc--ccccceeeeccccch
Confidence            356799999985 488888888888776542  245689999988644

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0048  Score=49.24  Aligned_cols=20  Identities=25%  Similarity=0.390  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|..|+|||||++-+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999997764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.09  E-value=0.006  Score=48.35  Aligned_cols=20  Identities=20%  Similarity=0.391  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|..|+|||||++-+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.09  E-value=0.0064  Score=51.71  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=21.3

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ..+.|.||.|+||||+++.|+-.+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999999998654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0048  Score=49.81  Aligned_cols=20  Identities=30%  Similarity=0.639  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++++|..|+|||||++.+.+
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.0046  Score=54.54  Aligned_cols=30  Identities=33%  Similarity=0.507  Sum_probs=26.8

Q ss_pred             eeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           58 FTLTLNAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .=+.|-+|+..+|+|++|+|||||+..|+-
T Consensus        36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             HHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            346788999999999999999999998875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.04  E-value=0.004  Score=50.01  Aligned_cols=22  Identities=45%  Similarity=0.555  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+.|+|++|+|||||++.+.+-
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4779999999999999999764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0055  Score=49.34  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|++|+|||||++.+.+
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999988765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.0054  Score=51.44  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=32.3

Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE  238 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~  238 (348)
                      +.+++|+||- -.+.......++..|.+..  ....++++|++...+.
T Consensus        99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~~i~  143 (227)
T d1sxjc2          99 GFKLIILDEA-DAMTNAAQNALRRVIERYT--KNTRFCVLANYAHKLT  143 (227)
T ss_dssp             SCEEEEETTG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGGSC
T ss_pred             CeEEEEEecc-ccchhhHHHHHHHHhhhcc--cceeeccccCcHHHhH
Confidence            3469999996 5688888888888887653  2456677777765543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.94  E-value=0.013  Score=47.64  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=23.8

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      .++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            445444444 57789999999999999886654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.90  E-value=0.0051  Score=50.52  Aligned_cols=20  Identities=35%  Similarity=0.655  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999997764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.83  E-value=0.0062  Score=48.65  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|..|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999997654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.77  E-value=0.0059  Score=48.99  Aligned_cols=20  Identities=30%  Similarity=0.576  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|..|+|||||++-+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0048  Score=49.53  Aligned_cols=21  Identities=43%  Similarity=0.569  Sum_probs=18.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+++
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.0075  Score=48.42  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|..|+|||||++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0084  Score=47.86  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++++|..|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999988874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0087  Score=47.78  Aligned_cols=21  Identities=19%  Similarity=0.376  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++-+.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0084  Score=48.53  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|..|+|||||++-+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999987765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.68  E-value=0.0084  Score=50.72  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++||+|+-||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999953

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.0074  Score=48.31  Aligned_cols=20  Identities=25%  Similarity=0.399  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++++|..|+|||||++-+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999997765

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.0075  Score=52.88  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=21.3

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      -+++|+||-++||||||+.|.|.
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            38999999999999999999984

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.55  E-value=0.0058  Score=49.06  Aligned_cols=20  Identities=40%  Similarity=0.635  Sum_probs=8.6

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.55  E-value=0.0093  Score=48.52  Aligned_cols=28  Identities=29%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC--CcCCCc
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK--HMVEPE   94 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl--~~~~~G   94 (348)
                      .+.|+|.+|+|||||++-+.-.  ..|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            4789999999999999987422  235666

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.39  E-value=0.01  Score=49.81  Aligned_cols=28  Identities=32%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHh-CCCcCCCc
Q 018938           67 RCLLVGSNGAGKTTILKIIG-GKHMVEPE   94 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~-Gl~~~~~G   94 (348)
                      .+.|+|.+|+|||||++-+. +-..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            47899999999999998763 43446655

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.39  E-value=0.0092  Score=55.07  Aligned_cols=47  Identities=15%  Similarity=0.131  Sum_probs=32.1

Q ss_pred             HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938          182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG  236 (348)
Q Consensus       182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~  236 (348)
                      -+|..+|=++||+|+..|-.   |+++....++    .+ ..|..|+-+-|--+-
T Consensus       218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~----aa-~tGhlV~tTlHa~~a  264 (401)
T d1p9ra_         218 RGLRAILRQDPDVVMVGEIR---DLETAQIAVQ----AS-LTGHLVMSTLHTNTA  264 (401)
T ss_dssp             HHHHHHGGGCCSEEEESCCC---SHHHHHHHHH----HH-HTTCEEEEEECCSSS
T ss_pred             HHHHHHHhhcCCEEEecCcC---ChHHHHHHHH----HH-hcCCeEEEEeccCch
Confidence            34667778999999999986   4555444433    23 358888888886543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.39  E-value=0.0062  Score=52.11  Aligned_cols=22  Identities=32%  Similarity=0.335  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      ++.|.||.|+||||+++.++-.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            4566799999999999999864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.0092  Score=48.27  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++++|..|+|||||++-+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999997765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.37  E-value=0.011  Score=47.09  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|..|+|||||++-+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.01  Score=48.16  Aligned_cols=21  Identities=33%  Similarity=0.713  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|..|+|||||++.++.
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            378999999999999987654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.011  Score=47.02  Aligned_cols=20  Identities=40%  Similarity=0.657  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++|+|+.|+|||||++-+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999996644

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.012  Score=46.78  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|..|+|||||++-+.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999997764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.30  E-value=0.011  Score=47.87  Aligned_cols=21  Identities=29%  Similarity=0.634  Sum_probs=17.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|..|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999975543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.29  E-value=0.011  Score=47.54  Aligned_cols=29  Identities=31%  Similarity=0.463  Sum_probs=23.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCcCCCce
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHMVEPEM   95 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~   95 (348)
                      .+.|+|..|+|||||++-+.....|+.|.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~   32 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence            47899999999999999887655566663

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.09  E-value=0.013  Score=48.00  Aligned_cols=22  Identities=36%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHhCCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +||+|.-.+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999853

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.04  E-value=0.014  Score=51.00  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++++|.-.||||||++.|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999964

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.02  E-value=0.015  Score=51.14  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++++|.-.||||||++.|+|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999965

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.014  Score=49.22  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+++|=|+-||||||+++.|.-.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            37899999999999999999853

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.90  E-value=0.0094  Score=55.78  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      -+.++||+|||||-|.|.|++++
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999865

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.015  Score=47.30  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=18.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999977654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.80  E-value=0.0064  Score=54.42  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=22.6

Q ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcC
Q 018938           66 DRCLLVGSNGAGKTTILKIIGGKHMV   91 (348)
Q Consensus        66 e~~~liG~NGsGKSTLlk~i~Gl~~~   91 (348)
                      .-+.|+||.|+|||||+|.+++++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35789999999999999999998743

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.79  E-value=0.014  Score=51.70  Aligned_cols=60  Identities=15%  Similarity=0.130  Sum_probs=35.4

Q ss_pred             CCCCCHHHHHHHHHHHHHccCCcEEEee--ccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938          171 MHKVSDGQRRRVQICMGLLKPFKVLLLD--EITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  237 (348)
Q Consensus       171 ~~~LSgGqrQRv~lAraL~~~P~lLlLD--EPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~  237 (348)
                      ...++.-+.+++....-+...|-++++=  |..      ....+-++.+. ....+..|+-++-..+..
T Consensus       195 ~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~------~~e~~~~~~~~-~~~~~~~vi~~sa~~E~~  256 (319)
T d1wxqa1         195 PTKWSQDDLLAFASEIRRVNKPMVIAANKADAA------SDEQIKRLVRE-EEKRGYIVIPTSAAAELT  256 (319)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS------CHHHHHHHHHH-HHHTTCEEEEECHHHHHH
T ss_pred             hhhcCHHHHHHhHHHhhhhcCchhhhcccccch------hhHHHHHHHHH-HhhcCCEEEEecHHHHHH
Confidence            3456777777777777777788777642  322      12233333333 345577888777776644

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.71  E-value=0.023  Score=45.84  Aligned_cols=32  Identities=19%  Similarity=0.256  Sum_probs=23.0

Q ss_pred             eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      .++..-+. -.|.-+.|.|++|+|||||.-.+.
T Consensus         5 ~~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           5 SLHGVLVD-VYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEESEEEE-ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            34443333 357789999999999999885543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.48  E-value=0.013  Score=51.55  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+||||..-||||||++.|++-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999974

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.019  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+.++||+|+|||.|.+.|+-.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            5789999999999999999875

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.26  E-value=0.023  Score=49.59  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=25.6

Q ss_pred             eeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           58 FTLTLNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      .=+.+-+|+..+|+|+.|+|||||+..|+
T Consensus        61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred             eeccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence            34788999999999999999999977775

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.16  E-value=0.023  Score=51.59  Aligned_cols=29  Identities=21%  Similarity=0.196  Sum_probs=26.0

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           61 TLNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++++.++.+.||.|+|||||.+.|++.+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45788899999999999999999999854

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.02  Score=48.18  Aligned_cols=21  Identities=52%  Similarity=0.594  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++.|.|.=|||||||++-+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            678999999999999998865

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.86  E-value=0.026  Score=47.18  Aligned_cols=45  Identities=18%  Similarity=0.216  Sum_probs=33.4

Q ss_pred             ccCCcEEEeeccCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEecCh
Q 018938          189 LKPFKVLLLDEITVD-LDVLARADLLRFLRKECEERGATIIYATHIF  234 (348)
Q Consensus       189 ~~~P~lLlLDEPtsg-LD~~~~~~l~~~l~~l~~~~g~tviivtHd~  234 (348)
                      ....++|++|+--.= =++..+..++.++.... +.|+.+|++|...
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~  140 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRH  140 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSC
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHh-hccceEEEecCCc
Confidence            558899999987432 34777888999988875 4578888887743

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.78  E-value=0.024  Score=49.22  Aligned_cols=20  Identities=40%  Similarity=0.582  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 018938           67 RCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~   86 (348)
                      -++|+|+.|||||||+..|+
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            37999999999999999883

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.75  E-value=0.028  Score=45.28  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      .+.|+|..|+|||||++-+..
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            368999999999999988854

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.55  E-value=0.031  Score=46.32  Aligned_cols=20  Identities=25%  Similarity=0.230  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      +||+|.-+||||||+..|.+
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999999864

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.36  E-value=0.029  Score=48.69  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      .+||||-.-+|||||++.|++-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999853

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.035  Score=46.89  Aligned_cols=43  Identities=30%  Similarity=0.337  Sum_probs=33.1

Q ss_pred             CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938          192 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL  237 (348)
Q Consensus       192 P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~  237 (348)
                      .+++|+||.= .|...++..++..|.+.  ..+..+|++|++.+-+
T Consensus       116 ~kviiIde~d-~l~~~~q~~Llk~lE~~--~~~~~~il~tn~~~~i  158 (239)
T d1njfa_         116 FKVYLIDEVH-MLSRHSFNALLKTLEEP--PEHVKFLLATTDPQKL  158 (239)
T ss_dssp             SEEEEEETGG-GSCHHHHHHHHHHHHSC--CTTEEEEEEESCGGGS
T ss_pred             CEEEEEECcc-cCCHHHHHHHHHHHhcC--CCCeEEEEEcCCcccc
Confidence            4699999985 48888888888777653  2366889999988765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.20  E-value=0.032  Score=48.62  Aligned_cols=23  Identities=30%  Similarity=0.283  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHH---hCCC
Q 018938           67 RCLLVGSNGAGKTTILKII---GGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i---~Gl~   89 (348)
                      -++|+|+.|||||||+..|   +|..
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~   33 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRI   33 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCcc
Confidence            3799999999999999988   4543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.11  E-value=0.039  Score=45.45  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      -+||+|.=.+|||||++.|+|..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            37999999999999999999854

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.04  Score=45.66  Aligned_cols=52  Identities=21%  Similarity=0.083  Sum_probs=35.5

Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh-hCCEEE
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN-WPSHIV  245 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~-~~d~v~  245 (348)
                      +.+++|+||. -.|...++..++..|.+..  .+..+|++|++.+-+.. +-.|+.
T Consensus       108 ~~kviIide~-d~l~~~a~n~Llk~lEep~--~~~~fIl~t~~~~~ll~tI~SRc~  160 (207)
T d1a5ta2         108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP--AETWFFLATREPERLLATLRSRCR  160 (207)
T ss_dssp             SCEEEEESCG-GGBCHHHHHHHHHHHTSCC--TTEEEEEEESCGGGSCHHHHTTSE
T ss_pred             ccceEEechh-hhhhhhhhHHHHHHHHhhc--ccceeeeeecChhhhhhhhcceeE
Confidence            4789999986 4566777788888776542  35567889999875433 444543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=91.93  E-value=0.046  Score=48.64  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=25.6

Q ss_pred             eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938           55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +.-+-...++| ++.+.||.|+|||.|.+.|++.
T Consensus       114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred             HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence            34344566666 6667899999999999999984

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.74  E-value=0.037  Score=50.69  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=30.3

Q ss_pred             CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938          192 FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN  239 (348)
Q Consensus       192 P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~  239 (348)
                      |-++++||--+-....   .+.+++.+. +..|..+++++.++..+..
T Consensus       277 ~v~l~lDE~~~~~~~~---~l~~~l~~~-Rk~Gv~~~l~~Qs~~ql~~  320 (433)
T d1e9ra_         277 RLWLFIDELASLEKLA---SLADALTKG-RKAGLRVVAGLQSTSQLDD  320 (433)
T ss_dssp             CEEEEESCGGGSCBCS---SHHHHHHHC-TTTTEEEEEEESCHHHHHH
T ss_pred             ceEEEechHhhhcccH---HHHHHHHHh-CCCCceEEEEeccHHHHHH
Confidence            3368889976544422   344555553 5789999999999887754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.25  E-value=0.052  Score=47.03  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=19.7

Q ss_pred             CCEEEEECCCCCcHHHHHHHHh
Q 018938           65 GDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      ..+++|.|.-|.|||||.+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999875

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.36  E-value=0.068  Score=48.36  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=21.6

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      ++++- +.++||+|+|||-|.|.|+-+.
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            35554 5678999999999999998753

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.20  E-value=0.061  Score=47.62  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .+.++||+|+|||.|.+.|+-.+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            57899999999999999998643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.04  E-value=0.083  Score=43.44  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -+.|+||.|.|||+++.-++-
T Consensus        45 n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHH
Confidence            467999999999999998875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.94  E-value=0.08  Score=45.76  Aligned_cols=21  Identities=43%  Similarity=0.551  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 018938           67 RCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~G   87 (348)
                      -+.||||.|+|||+++.-++-
T Consensus        41 n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHH
Confidence            567999999999999998875

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=89.92  E-value=0.12  Score=45.97  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCc
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHM   90 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~   90 (348)
                      ++.|=|+=||||||+++.|+-.+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            577889999999999999998643

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.88  E-value=0.041  Score=47.90  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=24.6

Q ss_pred             eeeEEeCCCEEEEECCCCCcHHHHHHHH
Q 018938           58 FTLTLNAGDRCLLVGSNGAGKTTILKII   85 (348)
Q Consensus        58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i   85 (348)
                      .=+.+-+|+..+|+|++|+|||||+..+
T Consensus        60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          60 AMIPVGRGQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             TTSCCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred             ccccccCCceEeeccCCCCChHHHHHHH
Confidence            3478899999999999999999998754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=89.74  E-value=0.071  Score=43.77  Aligned_cols=21  Identities=29%  Similarity=0.251  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 018938           68 CLLVGSNGAGKTTILKIIGGK   88 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~Gl   88 (348)
                      +||+|.-.+|||||++.|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            789999999999999998764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=89.54  E-value=0.078  Score=47.24  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++|=|+=||||||+++.|+-.+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            47889999999999999998653

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.23  E-value=0.086  Score=46.42  Aligned_cols=20  Identities=40%  Similarity=0.705  Sum_probs=17.7

Q ss_pred             eCCCEEEEECCCCCcHHHHH
Q 018938           63 NAGDRCLLVGSNGAGKTTIL   82 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLl   82 (348)
                      +.|++..+.|-||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999975

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.96  E-value=0.064  Score=46.85  Aligned_cols=29  Identities=28%  Similarity=0.370  Sum_probs=25.0

Q ss_pred             eeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938           58 FTLTLNAGDRCLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~   86 (348)
                      .=+.+-+|+..+|+|+.|+|||||+.-++
T Consensus        61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            44789999999999999999999976443

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.94  E-value=0.087  Score=46.55  Aligned_cols=19  Identities=42%  Similarity=0.733  Sum_probs=17.1

Q ss_pred             CCCEEEEECCCCCcHHHHH
Q 018938           64 AGDRCLLVGSNGAGKTTIL   82 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLl   82 (348)
                      .|++..+.|.||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            5889999999999999964

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.85  E-value=0.098  Score=43.65  Aligned_cols=19  Identities=21%  Similarity=0.405  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 018938           68 CLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~   86 (348)
                      +|++|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7899999999999998884

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=88.15  E-value=0.1  Score=46.54  Aligned_cols=24  Identities=33%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCc
Q 018938           67 RCLLVGSNGAGKTTILKIIGGKHM   90 (348)
Q Consensus        67 ~~~liG~NGsGKSTLlk~i~Gl~~   90 (348)
                      ++.|=|+=||||||+++.|.-.+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            478899999999999999987543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.76  E-value=0.13  Score=45.49  Aligned_cols=19  Identities=42%  Similarity=0.712  Sum_probs=17.5

Q ss_pred             CCCEEEEECCCCCcHHHHH
Q 018938           64 AGDRCLLVGSNGAGKTTIL   82 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLl   82 (348)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6788899999999999986

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=87.31  E-value=0.056  Score=40.52  Aligned_cols=21  Identities=38%  Similarity=0.392  Sum_probs=17.7

Q ss_pred             EeCCCEEEEECCCCCcHHHHH
Q 018938           62 LNAGDRCLLVGSNGAGKTTIL   82 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLl   82 (348)
                      +++|+.+.|.+|.|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            357999999999999999544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=86.96  E-value=0.18  Score=42.00  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 018938           68 CLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~G   87 (348)
                      ++++|.-.+|||||+..|+.
T Consensus        12 i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999953

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=85.96  E-value=0.21  Score=42.86  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=24.1

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      .++--++.|.||-++|||||+++|+.++
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3556689999999999999999999864

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=85.37  E-value=0.16  Score=43.98  Aligned_cols=16  Identities=38%  Similarity=0.698  Sum_probs=13.5

Q ss_pred             EEEEECCCCCcHHHHH
Q 018938           67 RCLLVGSNGAGKTTIL   82 (348)
Q Consensus        67 ~~~liG~NGsGKSTLl   82 (348)
                      .+.|.|+-||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4678899999999865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=85.35  E-value=0.15  Score=43.72  Aligned_cols=16  Identities=38%  Similarity=0.926  Sum_probs=13.6

Q ss_pred             EEEEECCCCCcHHHHH
Q 018938           67 RCLLVGSNGAGKTTIL   82 (348)
Q Consensus        67 ~~~liG~NGsGKSTLl   82 (348)
                      -+.|+|+-||||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4679999999999764

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.95  E-value=0.26  Score=37.96  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=19.4

Q ss_pred             CCEEEEECCCCCcHHH-HHHHHhC
Q 018938           65 GDRCLLVGSNGAGKTT-ILKIIGG   87 (348)
Q Consensus        65 Ge~~~liG~NGsGKST-Llk~i~G   87 (348)
                      |.+..|+||=.||||| |++.+--
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHH
Confidence            6788899999999999 7777643

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.85  E-value=0.23  Score=40.51  Aligned_cols=54  Identities=19%  Similarity=0.173  Sum_probs=39.0

Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh-hhCCEEEEE
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLE-NWPSHIVYV  247 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~-~~~d~v~~l  247 (348)
                      +.+|+|+||. -.|...++..++..|.+--  .+..+|++|++.+-+. .+-.|+..+
T Consensus        79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp--~~t~fiLit~~~~~ll~TI~SRC~~i  133 (198)
T d2gnoa2          79 TRKYVIVHDC-ERMTQQAANAFLKALEEPP--EYAVIVLNTRRWHYLLPTIKSRVFRV  133 (198)
T ss_dssp             SSEEEEETTG-GGBCHHHHHHTHHHHHSCC--TTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             CCEEEEEeCc-cccchhhhhHHHHHHhCCC--CCceeeeccCChhhCHHHHhcceEEE
Confidence            4589999985 6788888989988887642  3677899999987543 344554433

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=84.83  E-value=0.25  Score=42.40  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           65 GDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        65 Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +-.++|+|-.-+|||||+|.|.|-.
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEEecCccchhhhhhhhhccc
Confidence            3458999999999999999999953

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=84.65  E-value=0.27  Score=44.07  Aligned_cols=20  Identities=30%  Similarity=0.493  Sum_probs=17.4

Q ss_pred             CCCEEEEECCCCCcHHHHHH
Q 018938           64 AGDRCLLVGSNGAGKTTILK   83 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk   83 (348)
                      .+.++.|.||-|+||||++.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHH
Confidence            35699999999999999874

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.53  E-value=0.24  Score=41.81  Aligned_cols=19  Identities=21%  Similarity=0.335  Sum_probs=17.2

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 018938           68 CLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~   86 (348)
                      ++|+|.-++|||||+..|+
T Consensus         9 i~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6899999999999998884

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.37  E-value=0.25  Score=37.11  Aligned_cols=24  Identities=13%  Similarity=0.021  Sum_probs=20.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Q 018938           64 AGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        64 ~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      +|=.+.+.|-+||||||+.+.|.-
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            455678999999999999998843

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=84.17  E-value=0.15  Score=43.80  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=19.5

Q ss_pred             EeCCCEEEEECCCCCcHHH--HHHHHh
Q 018938           62 LNAGDRCLLVGSNGAGKTT--ILKIIG   86 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKST--Llk~i~   86 (348)
                      +.+|+.+.|.+|.|||||+  |..++.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~   32 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVR   32 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            3588999999999999997  335443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.86  E-value=0.21  Score=44.55  Aligned_cols=19  Identities=16%  Similarity=0.226  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 018938           68 CLLVGSNGAGKTTILKIIG   86 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i~   86 (348)
                      +||+|.-|+|||||+..|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            8999999999999999884

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=83.56  E-value=0.21  Score=37.63  Aligned_cols=31  Identities=13%  Similarity=0.176  Sum_probs=21.8

Q ss_pred             HccCCcEEEeeccCCCCCHHHHHHHHHHHHHH
Q 018938          188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKE  219 (348)
Q Consensus       188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l  219 (348)
                      ...+-+++|+||-= .+|..+...+..+++.+
T Consensus        91 ~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~  121 (136)
T d1a1va1          91 SGGAYDIIICDECH-STDATSILGIGTVLDQA  121 (136)
T ss_dssp             GGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred             hhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence            34577999999985 46887766666666543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.33  E-value=0.3  Score=41.28  Aligned_cols=27  Identities=41%  Similarity=0.508  Sum_probs=22.3

Q ss_pred             CCcEEEeeccCCCCCHHHHHHHHHHHHH
Q 018938          191 PFKVLLLDEITVDLDVLARADLLRFLRK  218 (348)
Q Consensus       191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~  218 (348)
                      +--.|++||. ..|++..+..+.+.|.+
T Consensus        94 ~gGtL~l~~i-~~L~~~~Q~~L~~~l~~  120 (247)
T d1ny5a2          94 DGGTLFLDEI-GELSLEAQAKLLRVIES  120 (247)
T ss_dssp             TTSEEEEESG-GGCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCh-HhCCHHHHHHHHHHHHh
Confidence            4457999998 77899999999988864

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=82.88  E-value=0.23  Score=42.06  Aligned_cols=18  Identities=33%  Similarity=0.460  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 018938           68 CLLVGSNGAGKTTILKII   85 (348)
Q Consensus        68 ~~liG~NGsGKSTLlk~i   85 (348)
                      ++|+|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999988

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=82.32  E-value=0.26  Score=44.74  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938          179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH  243 (348)
Q Consensus       179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~  243 (348)
                      -+++.=-.||...=..+-++||+    ......++..++.....+ ..|-+.-.-+..+..+|+|
T Consensus       163 y~~~e~d~al~rrF~~v~v~ep~----~~~~~~il~~~~~~~e~~-h~v~~~~~ai~~~v~ls~r  222 (387)
T d1qvra2         163 YREIEKDPALERRFQPVYVDEPT----VEETISILRGLKEKYEVH-HGVRISDSAIIAAATLSHR  222 (387)
T ss_dssp             HHHHTTCTTTCSCCCCEEECCCC----HHHHHHHHHHHHHHHHHH-TTCEECHHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHhcccccCCCCc----HHHHHHHHHHHHHHHHhc-cCCcccHHHHHHHHHhccc
Confidence            33333345777777888888885    445555555444433222 2244444445555555655

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=82.13  E-value=0.34  Score=47.27  Aligned_cols=25  Identities=32%  Similarity=0.415  Sum_probs=21.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ...+++.|.|.||||||+-.|.|.-
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4678999999999999999998854

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.43  E-value=0.35  Score=47.37  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=21.9

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ...+++.|.|+||||||+-.|.|+-
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~  147 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQ  147 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHH
Confidence            3578999999999999999998854

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=80.81  E-value=0.38  Score=39.50  Aligned_cols=28  Identities=11%  Similarity=-0.013  Sum_probs=24.6

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938           62 LNAGDRCLLVGSNGAGKTTILKIIGGKH   89 (348)
Q Consensus        62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl~   89 (348)
                      +++--++.|.||.++|||++...|+.++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            4667899999999999999999988864

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=80.31  E-value=0.4  Score=46.92  Aligned_cols=25  Identities=32%  Similarity=0.348  Sum_probs=21.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938           63 NAGDRCLLVGSNGAGKTTILKIIGG   87 (348)
Q Consensus        63 ~~Ge~~~liG~NGsGKSTLlk~i~G   87 (348)
                      ...+.+.|.|.||||||+-.|.|+-
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~  113 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQ  113 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            3568999999999999999998854