Citrus Sinensis ID: 018943

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGILMSSLLRSIISEIWTRTYSLNFQVVRLKTIHL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccEEEEEHHHHHHHccEEEEEEcccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHEEEEEccccccccccHHHHHHHHHccccccccccHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccEEEEEEcccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccHHccccccccccccccEEEEccEEcc
Coil and Loop (DISEMBL)
MGEWVIGAFINLVGSIAINFGtnllklghierekhstldsdgtngkhslkpIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVsfgnhqspvytpeqlaekysnITFLVYCLILIFIVAIYHYIYRKGenllavsgqdnrywrmLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGIsllapdeskgILMSSLLRSIISEIWTRTYSLNFQVVRLKTIHL
Flexible Loop (DISEMBL)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHstldsdgtngKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGILMSSLLRSIISEIWtrtyslnfqvvrlktihl
Low Complexity Region (SEG)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGilmssllrsiiseiWTRTYSLNFQVVRLKTIHL
Disordered region (IsUnstruct)
***WVIGAFINLVGSIAINFGTNLLKLGHIE****************SLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGILMSSLLRSIISEIWTRTYSLNFQVVRLKTI**
Disordered Region (DISOPRED)
*GEWVIGAFINLVGSIAINFGTNLLKLGH*******************LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQS**YTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLL*********************************R******
Disordered Region (DISEMBL)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGILMSSLLRSIISEIWTRTYSLNFQVVRLKTIHL
Disordered Region (DISPRO)
*GEWVIGAFINLVGSIAINFGTNLLKLGHIEREKH***********HSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGILMSSLLRSIISEIWTRTYSLNFQVVRLKTI**
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGILMSSLLRSIISEIWTRTYSLNFQVVRLKTIHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q5RD30	406	NIPA-like protein 3 OS=Po	yes	no	0.824	0.706	0.237	7e-13
Q6P499	406	NIPA-like protein 3 OS=Ho	yes	no	0.824	0.706	0.237	1e-12
Q91WC7	383	NIPA-like protein 2 OS=Mu	yes	no	0.827	0.751	0.215	1e-10
Q9H841	368	NIPA-like protein 2 OS=Ho	no	no	0.839	0.793	0.207	2e-10
Q8BGN5	410	NIPA-like protein 3 OS=Mu	no	no	0.824	0.7	0.231	4e-09
Q3SWX0	360	Magnesium transporter NIP	no	no	0.660	0.638	0.231	1e-08
Q8BZF2	406	Magnesium transporter NIP	no	no	0.649	0.556	0.237	2e-08
Q5R7Q3	360	Magnesium transporter NIP	no	no	0.660	0.638	0.223	9e-08
Q8N8Q9	360	Magnesium transporter NIP	no	no	0.660	0.638	0.223	9e-08
Q9JJC8	359	Magnesium transporter NIP	no	no	0.675	0.654	0.200	3e-07

>sp|Q5RD30|NPAL3_PONAB NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 139/324 (42%), Gaps = 37/324 (11%)

Query: 3   EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI 62
           E +IGA + + G + ++   NL K  HI              G    +      +W +G+
Sbjct: 32  ENLIGALLAIFGHLVVSIALNLQKYCHIR-----------LAGSKDPRAYFKTKTWWLGL 80

Query: 63  LVFLLGNCLNFISFGYAAQSLLAALGSVQFV-SNIAFSYFVFNKMVTVKVL-------VA 114
            + LLG    F S+ +A  SL+  L +V  + S I    F+  K      L       V 
Sbjct: 81  FLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYILSFVG 140

Query: 115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGE 172
               V+G   LV+F  +     T E +     +  FL+Y L  I++F + +Y Y  +   
Sbjct: 141 CGLAVVGTYLLVTFAPNSREKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNAN 200

Query: 173 NLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYS 232
           N++ +                 ++   +GS +V+  K+++ +L L++    QL     Y 
Sbjct: 201 NIVVI----------------LLLVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYV 244

Query: 233 MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRAT 292
           M +   +TA +  A L++   ++D+ LI  +  I  T+ +I  G +++ ++   D L   
Sbjct: 245 MFVCMVATAVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHIC 304

Query: 293 MFILGTASVFIGISLLAPDESKGI 316
           MF LG    F+G+ L+  +  K I
Sbjct: 305 MFALGCLIAFLGVFLITRNRKKAI 328

Pongo abelii (taxid: 9601)

>sp|Q6P499|NPAL3_HUMAN NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 139/324 (42%), Gaps = 37/324 (11%)

Query: 3   EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI 62
           E +IGA + + G + ++   NL K  HI              G    +      +W +G+
Sbjct: 32  ENLIGALLAIFGHLVVSIALNLQKYCHIR-----------LAGSKDPRAYFKTKTWWLGL 80

Query: 63  LVFLLGNCLNFISFGYAAQSLLAALGSVQFV-SNIAFSYFVFNKMVTVKVL-------VA 114
            + LLG    F S+ +A  SL+  L +V  + S I    F+  K      L       V 
Sbjct: 81  FLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVG 140

Query: 115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGE 172
               V+G   LV+F  +     T E +     +  FL+Y L  I++F + +Y Y  +   
Sbjct: 141 CGLAVVGTYLLVTFAPNSHEKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNAN 200

Query: 173 NLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYS 232
           N++ +                 ++   +GS +V+  K+++ +L L++    QL     Y 
Sbjct: 201 NIVVI----------------LLLVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYV 244

Query: 233 MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRAT 292
           M +   +TA +  A L++   ++D+ LI  +  I  T+ +I  G +++ ++   D L   
Sbjct: 245 MFVCMVATAVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHIC 304

Query: 293 MFILGTASVFIGISLLAPDESKGI 316
           MF LG    F+G+ L+  +  K I
Sbjct: 305 MFALGCLIAFLGVFLITRNRKKPI 328

Homo sapiens (taxid: 9606)

>sp|Q91WC7|NPAL2_MOUSE NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 134/315 (42%), Gaps = 27/315 (8%)

Query: 7   GAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFL 66
           G  + ++G++ I+   N+ K  H+   +           K   KP      W  G+L+  
Sbjct: 50  GVLLAILGNLVISISLNIQKYSHLHLAQ-----------KEHPKPYFKSVLWLSGVLLTA 98

Query: 67  LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV 126
           LG   NF ++G A  +L+A LG +    +   S     + +    L+       G   LV
Sbjct: 99  LGETGNFAAYGVAPITLIAPLGCMSVTGSAIISVLFLKENLRASDLLGMTLAFAGTYLLV 158

Query: 127 SFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIY-RKGENLLAVSGQDNRYW 185
           +F  + +   +   +   +    FLVY ++ I +  I  Y + RKG   + V        
Sbjct: 159 NFAPNITQAISARTVQYYFVGWQFLVYVILEILVFCILLYFHKRKGMKHIVVL------- 211

Query: 186 RMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWM 245
                     +   + S +V+  K++S ++ L+++   QL     Y ML++  ++  F +
Sbjct: 212 --------LTLVALLASLTVISVKAVSGMITLSVTGKMQLTYAIFYIMLVIMIASCVFQV 263

Query: 246 ARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGI 305
             LN+   L+    +VP+  + +T+ +I  G +++QE+     L   +++ G    F+G+
Sbjct: 264 KFLNQATELYTMTTVVPVNHVFFTTSAIIAGIIFYQEFLGAAFLTVFIYLFGCFLSFLGV 323

Query: 306 SLLAPDESKGILMSS 320
            L+  +  K  L  S
Sbjct: 324 FLVTRNREKEHLQQS 338

Mus musculus (taxid: 10090)

>sp|Q9H841|NPAL2_HUMAN NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 142/328 (43%), Gaps = 36/328 (10%)

Query: 2   GEW-------VIGAFINLVGSIAINFGTNLLKLGHIE--REKHSTLDSDGTNGKHSLKPI 52
           G+W       + G  + ++G++ I+   N+ K  H++  +++H              +P 
Sbjct: 38  GDWYRRNQIHLFGVLLAILGNLVISISLNIQKYSHLQLAQQEHP-------------RPY 84

Query: 53  VHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVL 112
                W  G+L+  +G   NF ++G+A  +L+A LG V    +   S       +    L
Sbjct: 85  FKSVLWWGGVLLMAVGETGNFAAYGFAPITLIAPLGCVSVTGSAIISVTFLKDNLRASDL 144

Query: 113 VATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGE 172
           + T     G   LV+F  + +   +   +        FL+Y ++ I I  I  Y Y++  
Sbjct: 145 LGTTLAFAGTYLLVNFAPNITQAISARTVQYYLVGWQFLIYVILEILIFCILLYFYKR-- 202

Query: 173 NLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYS 232
                  +  ++  +LL      +   + S +V+  K++S ++  ++ +  QL     Y 
Sbjct: 203 -------KGMKHMVILL-----TLVAILASLTVISVKAVSGMITFSVMDKMQLTYPIFYI 250

Query: 233 MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRAT 292
           M ++  ++  F +  LN+   L++   +VP+  I +T  +I  G +++QE+     L   
Sbjct: 251 MFIIMIASCVFQVKFLNQATKLYNTTTVVPVNHIFFTISAIIAGIIFYQEFLGAPFLTVF 310

Query: 293 MFILGTASVFIGISLLAPDESKGILMSS 320
           +++ G    F+G+ L+  +  K  L  S
Sbjct: 311 IYLFGCFLSFLGVFLVTRNREKEHLQQS 338

Homo sapiens (taxid: 9606)

>sp|Q8BGN5|NPAL3_MOUSE NIPA-like protein 3 OS=Mus musculus GN=Nipal3 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 139/324 (42%), Gaps = 37/324 (11%)

Query: 3   EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI 62
           E +IGA + + G + ++   NL K  HI              G    +      +W +G+
Sbjct: 36  ENLIGALLAIFGHLVVSIALNLQKYCHIR-----------LAGSKDPRAYFKTKTWWLGL 84

Query: 63  LVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVK--------VLVA 114
           L+ LLG    F S+ +A  SL+  L +V  +++         +    K          V 
Sbjct: 85  LLLLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFVRRYVLSFVG 144

Query: 115 TAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGE 172
               ++G   LV+F  +     T E +A    +  FL+Y L  I++F + +Y Y  R   
Sbjct: 145 CGLAIVGTYLLVTFAPNSHEKMTGENIARHLVSWPFLLYMLVAIVLFCLLLYFYKERNAN 204

Query: 173 NLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYS 232
           +++ +                 ++   +GS +V+  K++S +L L++    QL     Y 
Sbjct: 205 SIVVI----------------LLLVALLGSMTVVTVKAVSGMLVLSIQGNLQLDYPIFYV 248

Query: 233 MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRAT 292
           M +   +TA +    L+E   ++D+ LI  +  I  T+ +I  G +++ ++   +AL   
Sbjct: 249 MFVCMVATAIYQATFLSEASQIYDSSLIASVGYILSTTAAITAGAIFYLDFLGEEALHIC 308

Query: 293 MFILGTASVFIGISLLAPDESKGI 316
           MF LG    F+G+ L+  +  K I
Sbjct: 309 MFALGCLIAFLGVFLITRNRKKAI 332

Mus musculus (taxid: 10090)

>sp|Q3SWX0|NIPA2_BOVIN Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 29/259 (11%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQ-FVSNIAFSYFVFNKMVTVKVLVATA 116
           W  G+L    G   NF ++ +A  +L+  LG++   VS I  SYF+ N+ + +   +   
Sbjct: 59  WWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFL-NERLNLHGKIGCL 117

Query: 117 FIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYC-------LILIFIVAIYHYIYR 169
             +LG+  +V     +  + T  +++ K  +  F+V+        LILIF+V   H    
Sbjct: 118 LSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVSLILIFVVGPRH---- 173

Query: 170 KGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWF 229
                    GQ N          Y  +   +G+ SV  AK L   ++   +    L    
Sbjct: 174 ---------GQTNI-------LVYITICSVIGAVSVSCAKGLGIAIKELFAGKPVLQHPL 217

Query: 230 TYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDAL 289
           T+ +LL         +  LN  L +F+  ++ P++ + +T+  I    + F+E+Q     
Sbjct: 218 TWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVITCSAILFKEWQDMPVD 277

Query: 290 RATMFILGTASVFIGISLL 308
                + G  ++ +GI LL
Sbjct: 278 DVIGTLSGFFTIIVGIFLL 296

Acts as a selective Mg(2+) transporter.

Bos taurus (taxid: 9913)

>sp|Q8BZF2|NIPA4_MOUSE Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 112/257 (43%), Gaps = 31/257 (12%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAF 117
           W  G+     G   NF ++ +A  +++  LG++  + +  FS +   + + +   +    
Sbjct: 107 WWAGMATMSAGEVANFGAYAFAPATVVTPLGALSVLISAIFSSYCLGESLNLLGKLGCVI 166

Query: 118 IVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY-------CLILIFIVAIYHYIYRK 170
            + G+  +V     +  V T  ++A K  +  F+V+       CLILIFIVA  +     
Sbjct: 167 CMAGSTVMVIHAPKEEKVTTVAEMASKMKDTGFIVFAVLLVVSCLILIFIVAPRY----- 221

Query: 171 GENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFT 230
                   GQ N    +L+   Y I+   +GSFSV   K L   +R        +     
Sbjct: 222 --------GQRN----ILI---YIIICSVIGSFSVTAVKGLGVTIRNFFQGLPVVRHPLP 266

Query: 231 YSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALR 290
           Y + L+   +    +  LN  L +F+  L+ P++ + +T+  + +  V F+E+    A+ 
Sbjct: 267 YILSLILGLSIIIQVNFLNRALDIFNTSLVFPIYYVFFTTVVVASSIVLFKEWYTMSAVD 326

Query: 291 ATMFILGTASVFIGISL 307
               I+GT S F+ I L
Sbjct: 327 ----IVGTLSGFVTIIL 339

Acts as a Mg(2+) transporter. Can also transport other divalent cations such as Ba(2+), Mn(2+), Sr(2+) and Co(2+) but to a much less extent than Mg(2+). May be a receptor for ligands (trioxilins A3 and B3) from the hepoxilin pathway.

Mus musculus (taxid: 10090)

>sp|Q5R7Q3|NIPA2_PONAB Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 29/259 (11%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQ-FVSNIAFSYFVFNKMVTVKVLVATA 116
           W  G+L    G   NF ++ +A  +L+  LG++   VS I  SYF+ N+ + +   +   
Sbjct: 59  WWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFL-NERLNLHGKIGCL 117

Query: 117 FIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY-------CLILIFIVAIYHYIYR 169
             +LG+  +V     +  + T  +++ K  +  F+V+        LILIF+V   H    
Sbjct: 118 LSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRH---- 173

Query: 170 KGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWF 229
                    GQ N          Y  +   +G+FSV   K L   ++   +    L    
Sbjct: 174 ---------GQTNI-------LVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPL 217

Query: 230 TYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDAL 289
            + +LL         +  LN  L +F+  ++ P++ + +T+  +    + F+E+Q     
Sbjct: 218 AWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVD 277

Query: 290 RATMFILGTASVFIGISLL 308
                + G  ++ +GI LL
Sbjct: 278 DVIGTLSGFFTIIVGIFLL 296

Acts as a selective Mg(2+) transporter.

Pongo abelii (taxid: 9601)

>sp|Q8N8Q9|NIPA2_HUMAN Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 29/259 (11%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQ-FVSNIAFSYFVFNKMVTVKVLVATA 116
           W  G+L    G   NF ++ +A  +L+  LG++   VS I  SYF+ N+ + +   +   
Sbjct: 59  WWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFL-NERLNLHGKIGCL 117

Query: 117 FIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY-------CLILIFIVAIYHYIYR 169
             +LG+  +V     +  + T  +++ K  +  F+V+        LILIF+V   H    
Sbjct: 118 LSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRH---- 173

Query: 170 KGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWF 229
                    GQ N          Y  +   +G+FSV   K L   ++   +    L    
Sbjct: 174 ---------GQTNI-------LVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPL 217

Query: 230 TYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDAL 289
            + +LL         +  LN  L +F+  ++ P++ + +T+  +    + F+E+Q     
Sbjct: 218 AWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVD 277

Query: 290 RATMFILGTASVFIGISLL 308
                + G  ++ +GI LL
Sbjct: 278 DVIGTLSGFFTIIVGIFLL 296

Acts as a selective Mg(2+) transporter.

Homo sapiens (taxid: 9606)

>sp|Q9JJC8|NIPA2_MOUSE Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/254 (20%), Positives = 110/254 (43%), Gaps = 19/254 (7%)

Query: 58  WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQ-FVSNIAFSYFVFNKMVTVKVLVATA 116
           W  G+L    G   NF ++ +A  +L+  LG++   VS I  SYF+ N+ + +   +   
Sbjct: 59  WWAGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFL-NERLNLHGKIGCL 117

Query: 117 FIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIY--RKGENL 174
             +LG+  +V     +  + T  +++ K  +  F+V+   ++ +  I+ ++   R G+  
Sbjct: 118 LSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATFVVIVALIFIFVVGPRHGQTN 177

Query: 175 LAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSML 234
           + V               Y  +   +G+FSV   K L   ++  ++    L     + +L
Sbjct: 178 ILV---------------YITICSVIGAFSVSCVKGLGIAIKELLAGKPVLQHPLAWILL 222

Query: 235 LLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMF 294
                     +  LN  L +F+  ++ P++ + +T+  +    + F+E+Q          
Sbjct: 223 FSLVVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGT 282

Query: 295 ILGTASVFIGISLL 308
           + G  ++ +GI LL
Sbjct: 283 LSGFFTIIVGIFLL 296

Acts as a selective Mg(2+) transporter.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
255543473	1198	pentatricopeptide repeat-containing prot	0.905	0.262	0.844	1e-155
224128700	444	predicted protein [Populus trichocarpa]	0.905	0.709	0.841	1e-154
356498637	441	PREDICTED: uncharacterized protein LOC10	0.902	0.712	0.832	1e-150
356559514	443	PREDICTED: uncharacterized protein LOC10	0.899	0.706	0.834	1e-149
255645549	394	unknown [Glycine max]	0.899	0.794	0.834	1e-149
388515427	442	unknown [Lotus japonicus]	0.902	0.710	0.829	1e-148
296082240	442	unnamed protein product [Vitis vinifera]	0.905	0.712	0.822	1e-148
359488543	1154	PREDICTED: uncharacterized protein LOC10	0.905	0.272	0.822	1e-147
297818206	441	hypothetical protein ARALYDRAFT_484434 [	0.896	0.707	0.803	1e-147
449520012	444	PREDICTED: uncharacterized LOC101223129	0.902	0.707	0.809	1e-146

>gi|255543473|ref|XP_002512799.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547810|gb|EEF49302.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/316 (84%), Positives = 292/316 (92%), Gaps = 1/316 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGAFINL GSIAINFGTNLLKLGH ERE+HSTLD+DG +GK  LKPI+H+ +WR+
Sbjct: 1   MGEWVIGAFINLFGSIAINFGTNLLKLGHTERERHSTLDNDGASGKSHLKPIIHFQTWRI 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV +KMVTVKVLVATAFIVL
Sbjct: 61  GIIFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLHKMVTVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQLAEKYSN+TFL+YC+ILI +VA++HY+YR+GE L A+SGQ
Sbjct: 121 GNVFLVAFGNHQSPVYTPEQLAEKYSNMTFLLYCMILILVVALHHYLYRRGEILAAISGQ 180

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW+MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 181 DLRPYWQMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 240

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGLSLFDAI+IVPMFQI WT FSICTGFVYFQEYQVFDALR TMFILG  
Sbjct: 241 TAGFWMTRLNEGLSLFDAIVIVPMFQIVWTFFSICTGFVYFQEYQVFDALRTTMFILGMM 300

Query: 300 SVFIGISLLAPDESKG 315
            VFIGISLLAPDE +G
Sbjct: 301 CVFIGISLLAPDEPRG 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128700|ref|XP_002320397.1| predicted protein [Populus trichocarpa] gi|222861170|gb|EEE98712.1| predicted protein [Populus trichocarpa]

 Score =  549 bits (1414), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/316 (84%), Positives = 292/316 (92%), Gaps = 1/316 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGAFINL GSIAINFGTNLLKLGH ERE+HST D+ GT+GK  +KPI+++ +WRV
Sbjct: 1   MGEWVIGAFINLFGSIAINFGTNLLKLGHNERERHSTQDNVGTSGKVPVKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GIL F LGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 61  GILFFFLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPVYTPEQLAEKYSN+TFL YCL+LI +VA++HYIYR+GE +LA+SGQ
Sbjct: 121 GNIFLVAFGNHQSPVYTPEQLAEKYSNMTFLFYCLVLILLVALHHYIYRRGEIILAISGQ 180

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW+MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMS+ YQLHSWFTYS+LLLF S
Sbjct: 181 DLRPYWQMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSSDYQLHSWFTYSILLLFLS 240

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGL+LFDAILIVPMFQI WT FSICTGFVYFQEYQVFDALR TMFILG  
Sbjct: 241 TAGFWMTRLNEGLALFDAILIVPMFQIVWTFFSICTGFVYFQEYQVFDALRTTMFILGMT 300

Query: 300 SVFIGISLLAPDESKG 315
           SVF+GISLLAPDES+G
Sbjct: 301 SVFVGISLLAPDESRG 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498637|ref|XP_003518156.1| PREDICTED: uncharacterized protein LOC100778788 [Glycine max]

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/316 (83%), Positives = 286/316 (90%), Gaps = 2/316 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+++ SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-LLGSDGVNGKMNLKPIIYFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GIVFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY+NI+FL+Y L LI IVA++H IY++GE LL VSG 
Sbjct: 120 GNVFLVAFGNHQSPVYTPEQLTEKYTNISFLLYLLALISIVALHHSIYKRGELLLGVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLA+SNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWSMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLALSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGLSLFDAILIVPMFQIAWT FSICTGF+YFQEYQVFDALR TMF+LG  
Sbjct: 240 TAGFWMTRLNEGLSLFDAILIVPMFQIAWTLFSICTGFIYFQEYQVFDALRTTMFMLGMM 299

Query: 300 SVFIGISLLAPDESKG 315
            VFIGISLLAPDESKG
Sbjct: 300 CVFIGISLLAPDESKG 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559514|ref|XP_003548044.1| PREDICTED: uncharacterized protein LOC100812264 [Glycine max]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/315 (83%), Positives = 283/315 (89%), Gaps = 2/315 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+++ SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-LLGSDGVNGKMNLKPIIYFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GIVFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY+NI FL+Y L LI IVA++H IY++GE L AVSG 
Sbjct: 120 GNVFLVAFGNHQSPVYTPEQLTEKYTNIAFLLYLLALISIVALHHSIYKRGELLFAVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWSMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGLSLFDAILIVPMFQI WT FSICTGF+YFQEYQVFDALR TMFILG  
Sbjct: 240 TAGFWMTRLNEGLSLFDAILIVPMFQITWTFFSICTGFIYFQEYQVFDALRTTMFILGMM 299

Query: 300 SVFIGISLLAPDESK 314
            VFIGISLLAPDESK
Sbjct: 300 CVFIGISLLAPDESK 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645549|gb|ACU23269.1| unknown [Glycine max]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/315 (83%), Positives = 283/315 (89%), Gaps = 2/315 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+++ SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-LLGSDGVNGKMNLKPIIYFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI+ F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GIVFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY+NI FL+Y L LI IVA++H IY++GE L AVSG 
Sbjct: 120 GNVFLVAFGNHQSPVYTPEQLTEKYTNIAFLLYLLALISIVALHHSIYKRGELLFAVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWSMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGLSLFDAILIVPMFQI WT FSICTGF+YFQEYQVFDALR TMFILG  
Sbjct: 240 TAGFWMTRLNEGLSLFDAILIVPMFQITWTFFSICTGFIYFQEYQVFDALRTTMFILGMM 299

Query: 300 SVFIGISLLAPDESK 314
            VFIGISLLAPDESK
Sbjct: 300 CVFIGISLLAPDESK 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515427|gb|AFK45775.1| unknown [Lotus japonicus]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/316 (82%), Positives = 283/316 (89%), Gaps = 2/316 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEW++GAFINL GSIAINFGTNLLKLGH ERE+H  L SDG NGK +LKPI+ + SWR+
Sbjct: 1   MGEWIVGAFINLFGSIAINFGTNLLKLGHNERERH-VLGSDGLNGKMTLKPIISFQSWRI 59

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GIL F LGNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV NKMVTVKVLVATAFIVL
Sbjct: 60  GILFFFLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLNKMVTVKVLVATAFIVL 119

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPV+TPEQL EKY+N+ FL+Y L LI IVA++H  Y++GE LLAVSG 
Sbjct: 120 GNIFLVAFGNHQSPVFTPEQLTEKYTNVAFLLYLLALIVIVALHHSGYKRGELLLAVSGH 179

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYA+VSGAVGS SVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLF S
Sbjct: 180 DLRPYWNMLLPFSYAVVSGAVGSCSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFLS 239

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGL+LFDAILIVPMFQIAWT FSICTGF+YFQEY VFDALR TMFILG  
Sbjct: 240 TAGFWMTRLNEGLALFDAILIVPMFQIAWTLFSICTGFIYFQEYLVFDALRTTMFILGMM 299

Query: 300 SVFIGISLLAPDESKG 315
            VF+GISLLAPDESKG
Sbjct: 300 CVFLGISLLAPDESKG 315

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082240|emb|CBI21245.3| unnamed protein product [Vitis vinifera]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 260/316 (82%), Positives = 281/316 (88%), Gaps = 1/316 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWV+GA IN+ GSIAINFGTNLLKLGH ER +   LD++G NGK   KPI+++ +WRV
Sbjct: 1   MGEWVVGAIINVFGSIAINFGTNLLKLGHNERGRSLLLDNNGANGKLVPKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           G+L F LGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+YFV NKMV+VKVLVATAFIVL
Sbjct: 61  GLLFFSLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYFVLNKMVSVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPV+TPEQLAEK+SN TFLVYCLILI +VA+ HYIYR+GE   A+SGQ
Sbjct: 121 GNIFLVAFGNHQSPVFTPEQLAEKFSNATFLVYCLILILVVALNHYIYRRGEMQFAISGQ 180

Query: 181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D   YW MLLPFSYA VSGAVGS SVLFAKSLSNLLRLAMS+GYQLHSWFTYSMLL F S
Sbjct: 181 DLEPYWHMLLPFSYATVSGAVGSCSVLFAKSLSNLLRLAMSSGYQLHSWFTYSMLLCFLS 240

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWMARLNEGLSLFDAILIVPMFQIAWT FSICTGFVYFQEYQVFD LR TMFILG  
Sbjct: 241 TAGFWMARLNEGLSLFDAILIVPMFQIAWTFFSICTGFVYFQEYQVFDTLRTTMFILGMM 300

Query: 300 SVFIGISLLAPDESKG 315
           SVFIGISLLAPDE KG
Sbjct: 301 SVFIGISLLAPDEPKG 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488543|ref|XP_002278038.2| PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/316 (82%), Positives = 281/316 (88%), Gaps = 1/316 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWV+GA IN+ GSIAINFGTNLLKLGH ER +   LD++G NGK   KPI+++ +WRV
Sbjct: 1   MGEWVVGAIINVFGSIAINFGTNLLKLGHNERGRSLLLDNNGANGKLVPKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           G+L F LGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+YFV NKMV+VKVLVATAFIVL
Sbjct: 61  GLLFFSLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYFVLNKMVSVKVLVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GNIFLV+FGNHQSPV+TPEQLAEK+SN TFLVYCLILI +VA+ HYIYR+GE   A+SGQ
Sbjct: 121 GNIFLVAFGNHQSPVFTPEQLAEKFSNATFLVYCLILILVVALNHYIYRRGEMQFAISGQ 180

Query: 181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D   YW MLLPFSYA VSGAVGS SVLFAKSLSNLLRLAMS+GYQLHSWFTYSMLL F S
Sbjct: 181 DLEPYWHMLLPFSYATVSGAVGSCSVLFAKSLSNLLRLAMSSGYQLHSWFTYSMLLCFLS 240

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWMARLNEGLSLFDAILIVPMFQIAWT FSICTGFVYFQEYQVFD LR TMFILG  
Sbjct: 241 TAGFWMARLNEGLSLFDAILIVPMFQIAWTFFSICTGFVYFQEYQVFDTLRTTMFILGMM 300

Query: 300 SVFIGISLLAPDESKG 315
           SVFIGISLLAPDE KG
Sbjct: 301 SVFIGISLLAPDEPKG 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818206|ref|XP_002876986.1| hypothetical protein ARALYDRAFT_484434 [Arabidopsis lyrata subsp. lyrata] gi|297322824|gb|EFH53245.1| hypothetical protein ARALYDRAFT_484434 [Arabidopsis lyrata subsp. lyrata]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/316 (80%), Positives = 286/316 (90%), Gaps = 4/316 (1%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGAFIN+ GS+AINFGTNLLKLGH ERE+ +  D     GK  LKPI+H+ +WRV
Sbjct: 1   MGEWVIGAFINIFGSVAINFGTNLLKLGHNERERLALQDG---GGKMPLKPIIHFQTWRV 57

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GILVFLLGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+Y V NKMVTVKVLVATAFIVL
Sbjct: 58  GILVFLLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYVVLNKMVTVKVLVATAFIVL 117

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPV+TPEQLAEKYSN+TFLVYC ILI IVA++H++YRKGE L+++ GQ
Sbjct: 118 GNVFLVAFGNHQSPVFTPEQLAEKYSNVTFLVYCGILILIVAVHHFLYRKGEVLISIPGQ 177

Query: 181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           + + YW+MLLPFSYA+VSGA+GS SVLFAKSLSNLLRLAMS+ YQLHSWFTYSMLLLF S
Sbjct: 178 EISSYWKMLLPFSYAVVSGAIGSCSVLFAKSLSNLLRLAMSSSYQLHSWFTYSMLLLFLS 237

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWM RLNEGLSL+DAILIVPMFQIAWT FSICTGF+YFQE+QVFDALR TMFILG  
Sbjct: 238 TAGFWMTRLNEGLSLYDAILIVPMFQIAWTFFSICTGFIYFQEFQVFDALRTTMFILGMM 297

Query: 300 SVFIGISLLAPDESKG 315
            VFIGISLLAPD+++G
Sbjct: 298 CVFIGISLLAPDDTRG 313

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520012|ref|XP_004167028.1| PREDICTED: uncharacterized LOC101223129 [Cucumis sativus]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/315 (80%), Positives = 286/315 (90%), Gaps = 1/315 (0%)

Query: 1   MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
           MGEWVIGA INL GS+AINFGTNLLKLGH EREKHS L+++G+ GK  +KPI+++ +WRV
Sbjct: 1   MGEWVIGAVINLFGSLAINFGTNLLKLGHNEREKHSMLENNGSIGKTPMKPIIYFQTWRV 60

Query: 61  GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
           GI  F++GNCLNFISFGYAAQSLLAALGSVQFVSNIAF+YFV +KMVTVKV+VATAFIVL
Sbjct: 61  GITFFIIGNCLNFISFGYAAQSLLAALGSVQFVSNIAFAYFVLHKMVTVKVMVATAFIVL 120

Query: 121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
           GN+FLV+FGNHQSPVYTPEQL EKY NITFL+YC+ILI +VA++H IYR+GE LL+VSGQ
Sbjct: 121 GNVFLVAFGNHQSPVYTPEQLVEKYGNITFLLYCVILILVVALHHSIYRRGELLLSVSGQ 180

Query: 181 DNR-YWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
           D R YW MLLPFSYAIVSGA+GS SVLFAKSLS LLRLAMS+ YQLHSWFTYS+LLLF S
Sbjct: 181 DLRPYWHMLLPFSYAIVSGAIGSCSVLFAKSLSILLRLAMSSDYQLHSWFTYSLLLLFLS 240

Query: 240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
           TAGFWMARLNEGLSLFDAILIVPMFQIAWT FSICTGF+YF+E+QV DALR TMFILG  
Sbjct: 241 TAGFWMARLNEGLSLFDAILIVPMFQIAWTFFSICTGFIYFKEFQVLDALRTTMFILGMM 300

Query: 300 SVFIGISLLAPDESK 314
           SVFIGISLLAPDE +
Sbjct: 301 SVFIGISLLAPDEPR 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2090822	441	AT3G26670 "AT3G26670" [Arabido	0.896	0.707	0.803	2.6e-134
ZFIN|ZDB-GENE-040718-379	387	nipal3 "NIPA-like domain conta	0.813	0.731	0.260	1.3e-20
UNIPROTKB|F1NBN3	339	NPAL2 "Uncharacterized protein	0.724	0.743	0.255	1.6e-19
MGI|MGI:1921802	410	Nipal3 "NIPA-like domain conta	0.818	0.695	0.246	5.7e-16
UNIPROTKB|E2REQ4	406	NIPAL3 "Uncharacterized protei	0.816	0.699	0.235	1.3e-15
UNIPROTKB|E1BLE7	406	NIPAL3 "Uncharacterized protei	0.816	0.699	0.235	1.7e-15
UNIPROTKB|E1BR96	408	NIPAL3 "Uncharacterized protei	0.818	0.698	0.236	3.2e-15
UNIPROTKB|A6NN97	368	NIPAL3 "Uncharacterized protei	0.816	0.771	0.232	5e-15
RGD|1564315	383	Nipal2 "NIPA-like domain conta	0.727	0.660	0.228	5.9e-15
UNIPROTKB|F1STV6	406	NIPAL3 "Uncharacterized protei	0.816	0.699	0.238	7.3e-15

TAIR|locus:2090822 AT3G26670 "AT3G26670" [Arabidopsis thaliana (taxid:3702)]

 Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
 Identities = 254/316 (80%), Positives = 284/316 (89%)

Query:     1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRV 60
             MGEWVIGAFIN+ GS+AINFGTNLLKLGH ERE+ +    DG  GK  LKPI+H  +WRV
Sbjct:     1 MGEWVIGAFINIFGSVAINFGTNLLKLGHNERERLAL--QDG-GGKMPLKPIIHNQTWRV 57

Query:    61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVL 120
             GILVFLLGNCLNFISFGYAAQSLLAALGS+QFVSNIAF+Y V NKMVTVKVLVATAFIVL
Sbjct:    58 GILVFLLGNCLNFISFGYAAQSLLAALGSIQFVSNIAFAYVVLNKMVTVKVLVATAFIVL 117

Query:   121 GNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQ 180
             GN+FLV+FGNHQSPV+TPEQLAEKYSN+TFLVYC ILI IVA++H++YRKGE L++  GQ
Sbjct:   118 GNVFLVAFGNHQSPVFTPEQLAEKYSNVTFLVYCGILILIVAVHHFLYRKGEVLISTPGQ 177

Query:   181 D-NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
             + + YW+MLLPFSYA+VSGA+GS SVLFAKSLSNLLRLAMS+ YQLHSWFTYSMLLLF S
Sbjct:   178 EISSYWKMLLPFSYAVVSGAIGSCSVLFAKSLSNLLRLAMSSSYQLHSWFTYSMLLLFLS 237

Query:   240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
             TAGFWM RLNEGLSL+DAILIVPMFQIAWT FSICTG +YFQE+QVFDALR TMFILG  
Sbjct:   238 TAGFWMTRLNEGLSLYDAILIVPMFQIAWTFFSICTGCIYFQEFQVFDALRTTMFILGMM 297

Query:   300 SVFIGISLLAPDESKG 315
              VFIGISLLAPD+++G
Sbjct:   298 CVFIGISLLAPDDTRG 313

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040718-379 nipal3 "NIPA-like domain containing 3" [Danio rerio (taxid:7955)]

 Score = 245 (91.3 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 82/315 (26%), Positives = 151/315 (47%)

Query:    11 NLVGSIAINFGTNLLKLG-HIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGN 69
             NL+G++   FG  L+ +   I+++ H TL      G    +   +  +W +G+++ +LG 
Sbjct:    20 NLIGTLLAIFGNLLVSISVSIQKQSHVTLA-----GNKDPRQYYYTKTWLLGLVLMVLGE 74

Query:    70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL---VAT----AFIVLG 121
                F+S+ +A  SL+A L +V  +S+    + F+  K    + L   + T    A    G
Sbjct:    75 GALFVSYAFAPLSLIAPLNAVSVISSSILGFLFLREKWKAQEFLKRYILTFLGCAMTAGG 134

Query:   122 NIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSG 179
                 V+FG +       E + +   +  FL+Y L  I+ F + +Y+Y  R    L+ +  
Sbjct:   135 TYLFVTFGPNSHEKLNAENIVKHVISWPFLLYLLLGIIAFCLVLYYYKQRNANYLVLI-- 192

Query:   180 QDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFS 239
                    +LL    A++    GS +V+  K++S ++ L++    QL     Y M +   +
Sbjct:   193 -------LLL---VALL----GSVTVITVKAVSGMIVLSIVGPLQLSYPIFYVMFVCMVA 238

Query:   240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTA 299
             T  F  + L +   L+D+ LI  +  I  T+F+I  G V++QE+   D L   +F+LG A
Sbjct:   239 TIVFQASFLAQASHLYDSSLIACVNYIFCTTFAIGGGAVFYQEFNHEDVLHICLFLLGCA 298

Query:   300 SVFIGISLLAPDESK 314
               F+G+ L+  ++ K
Sbjct:   299 ICFLGVFLITKNKRK 313

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1NBN3 NPAL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 239 (89.2 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 68/266 (25%), Positives = 132/266 (49%)

Query:    49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVT 108
             L+P      W  G ++  +G   NF ++G+A  +L+A LG V  + +   S     K + 
Sbjct:    37 LQPFYRSKLWWCGAVLLGIGELGNFTAYGFAPIALVAPLGCVSIIGSAFISVIFLKKTMR 96

Query:   109 VKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIY 168
                ++  A  V+G   LV+F  + S   T  Q+     +  FLVY ++ I I  I  Y Y
Sbjct:    97 AADILGGALAVVGTYLLVTFAPNVSQQLTARQVQNDLVSWPFLVYVILEIIIFCILLYFY 156

Query:   169 RKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSW 228
             ++     AV     ++  +LL     ++   + S +V+  K++++++ L+     QL   
Sbjct:   157 KRK----AV-----KHIVVLL-----MMVALLASLTVIAVKAVASMIILSAKGKMQLTYP 202

Query:   229 FTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDA 288
               Y ML+L  ++  F +  LN+ L L++A  +VP+  +  T+ +I +G +++QE+Q    
Sbjct:   203 VFYIMLILMATSCVFQVKFLNQALHLYEARAVVPINFVFCTTSAIISGVIFYQEFQSAAF 262

Query:   289 LRATMFILGTASVFIGISLLAPDESK 314
             L   MF+ G    F+ + ++A ++++
Sbjct:   263 LSVFMFLFGCLLSFLSVFVIAVNKNE 288

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1921802 Nipal3 "NIPA-like domain containing 3" [Mus musculus (taxid:10090)]

 Score = 219 (82.2 bits), Expect = 5.7e-16, P = 5.7e-16
 Identities = 77/313 (24%), Positives = 145/313 (46%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+  +   G+    +        +W +G+L+ LLG  
Sbjct:    37 NLIGALLAIFGHLVVSIA-LNLQKYCHIRLAGSKDPRAY---FKTKTWWLGLLLLLLGEL 92

Query:    71 LNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNK-----MVTVKVL--VATAFIVLGN 122
               F S+ +A  SL+  L +V  +++      F+  K      V   VL  V     ++G 
Sbjct:    93 GVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFVRRYVLSFVGCGLAIVGT 152

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYR-KGENLLAVSGQD 181
               LV+F  +     T E +A    +  FL+Y L+ I +  +  Y Y+ +  N + V    
Sbjct:   153 YLLVTFAPNSHEKMTGENIARHLVSWPFLLYMLVAIVLFCLLLYFYKERNANSIVV---- 208

Query:   182 NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTA 241
                  +LL     +V+  +GS +V+  K++S +L L++    QL     Y M +   +TA
Sbjct:   209 -----ILL-----LVA-LLGSMTVVTVKAVSGMLVLSIQGNLQLDYPIFYVMFVCMVATA 257

Query:   242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASV 301
              +    L+E   ++D+ LI  +  I  T+ +I  G +++ ++   +AL   MF LG    
Sbjct:   258 IYQATFLSEASQIYDSSLIASVGYILSTTAAITAGAIFYLDFLGEEALHICMFALGCLIA 317

Query:   302 FIGISLLAPDESK 314
             F+G+ L+  +  K
Sbjct:   318 FLGVFLITRNRKK 330

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0015693 "magnesium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

UNIPROTKB|E2REQ4 NIPAL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 74/314 (23%), Positives = 144/314 (45%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+  +   G+    +        +W +G+ + LLG  
Sbjct:    33 NLIGALLAIFGHLVVSIA-LNLQKYCHIRLAGSKDPRAY---FKTKTWWLGLFLMLLGEL 88

Query:    71 LNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL-------VATAFIVLGN 122
               F S+ +A  SL+  L +V  +++      F+  K      L       V     ++G 
Sbjct:    89 GVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVGCGLAIVGT 148

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQ 180
               LV+F  +     T E + +   +  FL+Y L  I++F + +Y Y  +   N++ +   
Sbjct:   149 YLLVTFAPNSHEKMTGENITKHLVSWPFLLYMLVEIVLFCLLLYFYKEKNANNIIVI--- 205

Query:   181 DNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST 240
                   +LL    A++    GS +V+  K+++ +L L++    QL     Y M +   +T
Sbjct:   206 ------LLL---VALL----GSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVAT 252

Query:   241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTAS 300
             A +  A L++   ++D+ LI  +  I  T+ +I  G V++ ++   DAL   MF LG   
Sbjct:   253 AVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAVFYLDFIGEDALHICMFALGCLI 312

Query:   301 VFIGISLLAPDESK 314
              F+G+ L+  +  K
Sbjct:   313 AFLGVFLITRNRKK 326

GO:0016020 "membrane" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|E1BLE7 NIPAL3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 215 (80.7 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 74/314 (23%), Positives = 142/314 (45%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+  +   G+    +        +W +G+ + LLG  
Sbjct:    33 NLIGALLAIFGHLVVSIA-LNLQKYCHIRLAGSKDPRAY---FKTKTWWLGLFLMLLGEL 88

Query:    71 LNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL-------VATAFIVLGN 122
               F S+ +A  SL+  L +V  +++      F+  K      L       V     ++G 
Sbjct:    89 GVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYILSFVGCGLAIVGT 148

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQ 180
               LV+FG +     T + +     +  FL+Y L  I++F + +Y Y  R   N++ +   
Sbjct:   149 YLLVTFGPNSHEKMTGDNIIRHLVSWPFLLYMLVEIILFCLLLYFYKERNANNIVVI--- 205

Query:   181 DNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST 240
                   +LL    A++    GS +V+  K+++ +L L++    QL     Y M +   +T
Sbjct:   206 ------LLL---VALL----GSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVAT 252

Query:   241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTAS 300
             A +  A L +   ++D+ LI  +  I  T+ +I  G V++ ++   D L   MF LG   
Sbjct:   253 AIYQAAFLGQASQMYDSSLIASVGYILSTTVAITAGAVFYLDFLGQDVLHVCMFALGCLI 312

Query:   301 VFIGISLLAPDESK 314
              F+G+ L+  +  K
Sbjct:   313 AFLGVFLITRNRKK 326

GO:0016020 "membrane" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|E1BR96 NIPAL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 74/313 (23%), Positives = 143/313 (45%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+S +   G+  K S +      +W  G+ + +LG  
Sbjct:    35 NLIGALLAIFGHLVISIA-LNLQKYSHIRLAGS--KDS-RAYFKTKTWWCGLFLLVLGEL 90

Query:    71 LNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL-------VATAFIVLGN 122
               F S+ +A  SL+  L +V  +++      F+  K    + L       V     ++G 
Sbjct:    91 GVFSSYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKEFLRRYVLSFVGCGLAIVGT 150

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYR-KGENLLAVSGQD 181
               L++FG +     T E +     +  FL+Y L+ I I  +  Y Y+ K  N + +    
Sbjct:   151 YLLITFGPNSHEKMTGENITRHLVSWPFLLYMLVEIIIFCLLLYFYKEKNANYIVI---- 206

Query:   182 NRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTA 241
                  +LL     +V+  +GS +V+  K+++ ++ +++    QL+    Y ML+   +TA
Sbjct:   207 -----ILL-----LVA-LLGSMTVVTVKAVAGMIVVSIRGNLQLNYPIFYIMLVCMIATA 255

Query:   242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASV 301
              F    L +   L+D+  I  +  I  T+ +I  G  ++ ++   D L   MF LG    
Sbjct:   256 VFQATFLAQASQLYDSSQIASIGYILSTTVAITAGATFYLDFTGEDVLHICMFALGCLIA 315

Query:   302 FIGISLLAPDESK 314
             F+G+ L+  +  K
Sbjct:   316 FLGVFLITRNRKK 328

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|A6NN97 NIPAL3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 73/314 (23%), Positives = 142/314 (45%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+  +   G+    +        +W +G+ + LLG  
Sbjct:    33 NLIGALLAIFGHLVVSIA-LNLQKYCHIRLAGSKDPRAY---FKTKTWWLGLFLMLLGEL 88

Query:    71 LNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVL-------VATAFIVLGN 122
               F S+ +A  SL+  L +V  +++      F+  K      L       V     V+G 
Sbjct:    89 GVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVGCGLAVVGT 148

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQ 180
               LV+F  +     T E +     +  FL+Y L  I++F + +Y Y  +   N++ +   
Sbjct:   149 YLLVTFAPNSHEKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNANNIVVI--- 205

Query:   181 DNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST 240
                   +LL    A++    GS +V+  K+++ +L L++    QL     Y M +   +T
Sbjct:   206 ------LLL---VALL----GSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVAT 252

Query:   241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTAS 300
             A +  A L++   ++D+ LI  +  I  T+ +I  G +++ ++   D L   MF LG   
Sbjct:   253 AVYQAAFLSQASQMYDSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHICMFALGCLI 312

Query:   301 VFIGISLLAPDESK 314
              F+G+ L+  +  K
Sbjct:   313 AFLGVFLITRNRKK 326

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1564315 Nipal2 "NIPA-like domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 5.9e-15, P = 5.9e-15
 Identities = 62/271 (22%), Positives = 124/271 (45%)

Query:    46 KHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNK 105
             K   KP      W  G+L+  +G   NF ++G A  +L+A LG V    +   S     +
Sbjct:    78 KEHPKPYFKSVLWLSGVLLMAIGETGNFAAYGVAPITLIAPLGCVSVTGSAVISVIFLKE 137

Query:   106 MVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAI 163
              +    L+       G   LV+F  + +   +   +   +    FLVY +  IL+F + +
Sbjct:   138 NLRASDLLGMTLAFAGTYLLVNFAPNITQAISARTIQYYFVGWQFLVYMILEILVFCILL 197

Query:   164 YHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGY 223
             Y +  RKG+  + +          LL     +V+  + S +V+  K++S ++ L+++   
Sbjct:   198 YFH-KRKGKKHIVI----------LL----TLVA-LLASLTVISVKAVSGMITLSVTGKM 241

Query:   224 QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEY 283
             QL     Y ML++  ++  F +  LN+   L+    +VP+  + +T+ +I  G +++QE+
Sbjct:   242 QLTYAIFYIMLVIMIASCVFQVKFLNQATELYTMTTVVPVNHVFFTTSAIIAGIIFYQEF 301

Query:   284 QVFDALRATMFILGTASVFIGISLLAPDESK 314
                  L   +++ G    F+G+ L+  +  +
Sbjct:   302 LGAAFLTVFIYLFGCFLSFLGVFLVTRNRER 332

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1STV6 NIPAL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 210 (79.0 bits), Expect = 7.3e-15, P = 7.3e-15
 Identities = 75/314 (23%), Positives = 141/314 (44%)

Query:    11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC 70
             NL+G++   FG  ++ +  +  +K+  +   G+    +        +W +G+ + LLG  
Sbjct:    33 NLIGALLAIFGHLVVSIA-LNLQKYCHIRLAGSKDPRAY---FKTKTWWLGLFLMLLGEL 88

Query:    71 LNFISFGYAAQSLLAALGSVQFV-SNIAFSYFVFNKMVTVKVL-------VATAFIVLGN 122
               F S+ +A  SL+  L +V  + S+I    F+  K      L       V     ++G 
Sbjct:    89 GVFASYAFAPLSLIVPLSAVSVIASSIIGIIFIKEKWKPKDFLRRYILSFVGCGLAIVGT 148

Query:   123 IFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCL--ILIFIVAIYHYIYRKGENLLAVSGQ 180
               LV+F  +     T E +     +  FL+Y L  I++F   +Y Y  R   N++ +   
Sbjct:   149 YLLVTFAPNSHEKMTGENITRHLVSWPFLLYMLVGIVLFCSLLYFYKERNANNVVVI--- 205

Query:   181 DNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST 240
                   +LL    A++    GS +V+  K+++ +L L++    QL     Y M +   +T
Sbjct:   206 ------LLL---VALL----GSMTVVTVKAVAGMLILSIQGNLQLDYPIFYVMFVCMVAT 252

Query:   241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTAS 300
             A +  A L +   ++D+ LI  +  I  T+ +I  G +++ ++   D L   MF LG   
Sbjct:   253 AIYQAAFLGQASQMYDSSLIASVGYILSTTVAITAGAIFYLDFLGEDVLHVCMFALGCLI 312

Query:   301 VFIGISLLAPDESK 314
              F+G+ L+  +  K
Sbjct:   313 AFLGVFLITRNRKK 326

GO:0016020 "membrane" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
pfam05653	300	pfam05653, Mg_trans_NIPA, Magnesium transporter NI	1e-17

>gnl|CDD|114381 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 58/306 (18%), Positives = 128/306 (41%), Gaps = 23/306 (7%)

Query: 5   VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILV 64
            IG  + +  SI I     + K G +   +       G  G   LK  +    W  G+L 
Sbjct: 6   YIGLILAVSSSIFIGSSFIIKKKGLLRLARGGM--RAGEGGYGYLKEWL----WWAGLLT 59

Query: 65  FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF 124
            ++G   NF ++ +A  +L+  LG++  + +   S F  N+ + +   +     ++G+  
Sbjct: 60  MIVGEAANFAAYAFAPATLVTPLGALSVIISAVLSSFFLNEKLNLFGKLGCVLCIVGSTV 119

Query: 125 LVSFGNHQSPVYTPEQLAEKYSNITFLVY--CLILIFIVAIYHYIYRKGENLLAVSGQDN 182
           +V     +  + +  ++    ++  FLVY   ++ + ++ I+    R G+  + V     
Sbjct: 120 IVIHAPKEQEIESVREVWNLATDPGFLVYVILVVGVVLILIFFVEPRHGQTNILV----- 174

Query: 183 RYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAG 242
                     Y  +   +GS +V+  K+L   ++L  S   QL     +  L++  +   
Sbjct: 175 ----------YITICSLIGSLTVMSVKALGIAIKLTFSGKNQLGYPQFWIFLVVVVTCVV 224

Query: 243 FWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVF 302
             +  LN+ L +F+  ++ P++ + +T+  I    + F+E+           + G  ++ 
Sbjct: 225 TQINYLNKALDIFNTSIVTPVYYVFFTTSVIAASAILFKEWLGQSFDDIAGELCGFFTIL 284

Query: 303 IGISLL 308
           +G  LL
Sbjct: 285 LGTFLL 290

NIPA (nonimprinted in Prader-Willi/Angelman syndrome) is a family of integral membrane proteins which function as magnesium transporters. Length = 300

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	100.0
KOG2922	335	consensus Uncharacterized conserved protein [Funct	100.0
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	99.1
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.06
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.74
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.69
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.65
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.63
PRK15430	296	putative chloramphenical resistance permease RarD;	98.61
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.58
PLN00411	358	nodulin MtN21 family protein; Provisional	98.48
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	98.45
COG2510	140	Predicted membrane protein [Function unknown]	98.45
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.39
PRK11272	292	putative DMT superfamily transporter inner membran	98.32
PRK11689	295	aromatic amino acid exporter; Provisional	98.32
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.28
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.27
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.21
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.18
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	98.07
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.04
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.97
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.96
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.75
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.68
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.66
PRK10532	293	threonine and homoserine efflux system; Provisiona	97.66
COG2510	140	Predicted membrane protein [Function unknown]	97.65
PRK13499	345	rhamnose-proton symporter; Provisional	97.63
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	97.45
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.41
PLN00411	358	nodulin MtN21 family protein; Provisional	97.37
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.36
PRK11431	105	multidrug efflux system protein; Provisional	97.19
PRK11689	295	aromatic amino acid exporter; Provisional	97.07
PRK11272	292	putative DMT superfamily transporter inner membran	97.07
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.03
COG2076	106	EmrE Membrane transporters of cations and cationic	96.96
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.95
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	96.78
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	96.72
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.63
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	96.57
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.25
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.25
COG2962	293	RarD Predicted permeases [General function predict	96.2
PRK10650	109	multidrug efflux system protein MdtI; Provisional	95.85
COG0697	292	RhaT Permeases of the drug/metabolite transporter	95.83
PRK11431	105	multidrug efflux system protein; Provisional	95.75
PRK15430	296	putative chloramphenical resistance permease RarD;	95.75
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	95.43
KOG3912	372	consensus Predicted integral membrane protein [Gen	94.61
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	94.34
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	94.31
PF13536	113	EmrE: Multidrug resistance efflux transporter	94.31
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.2
COG2076	106	EmrE Membrane transporters of cations and cationic	93.84
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	93.79
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	93.76
KOG2765	416	consensus Predicted membrane protein [Function unk	93.16
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	91.4
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	91.33
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	91.28
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	90.59
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	90.06
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	89.76
KOG4831	125	consensus Unnamed protein [Function unknown]	89.57
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	88.9
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	88.27
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	87.13
COG1742	109	Uncharacterized conserved protein [Function unknow	87.09
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	85.33
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	85.13
PRK13499	345	rhamnose-proton symporter; Provisional	81.99
PRK02237	109	hypothetical protein; Provisional	81.95
KOG1581	327	consensus UDP-galactose transporter related protei	81.08
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	80.72
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	80.56
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	80.19

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=100.00  E-value=5.8e-62  Score=466.93  Aligned_cols=298  Identities=31%  Similarity=0.529  Sum_probs=269.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 018943            2 GEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQ   81 (348)
Q Consensus         2 ~~~~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p~   81 (348)
                      .+|++|+.+|++||++++.|.++|||+|.|+++.+.++      .+..++++|||+||.|+.++++|++++++||+++|+
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~------~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~   76 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA------GSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPA   76 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc------cchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhH
Confidence            46889999999999999999999999999887533221      123457899999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCCCCCCChHHHHHHhcchhHHHHHHHHHHHH
Q 018943           82 SLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFIV  161 (348)
Q Consensus        82 slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~i~  161 (348)
                      ++|||++++++++|++++++++|||++++|+.|++++++|+++++.++|++++.+|.+|+.+++.+|.|+.|+.+..+..
T Consensus        77 slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~  156 (300)
T PF05653_consen   77 SLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLI  156 (300)
T ss_pred             HHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988877655


Q ss_pred             HHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHH
Q 018943          162 AIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTA  241 (348)
Q Consensus       162 ~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~K~~~~~l~~~~~g~~~~~~~~~y~ll~~~~~~~  241 (348)
                      +.+.+..+++      .|+       .+.+.|..+||++|++|++++|++++.++++++|++||.+|.+|.++++++.++
T Consensus       157 ~~L~~~~~~r------~g~-------~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~  223 (300)
T PF05653_consen  157 LILIFFIKPR------YGR-------RNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTA  223 (300)
T ss_pred             HHHHHhhcch------hcc-------cceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHH
Confidence            4443332211      122       235778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 018943          242 GFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGILM  318 (348)
Q Consensus       242 l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~~~  318 (348)
                      +.|++||||||++||++.++|+||++||++++++|+++|||++++++++++++.+|+.+++.||++|++++++++.+
T Consensus       224 ~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~~~  300 (300)
T PF05653_consen  224 VLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEISQ  300 (300)
T ss_pred             HHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988753

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=8.2e-62  Score=456.65  Aligned_cols=304  Identities=24%  Similarity=0.401  Sum_probs=280.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhh
Q 018943            1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAA   80 (348)
Q Consensus         1 m~~~~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p   80 (348)
                      +++|++|+++|+.||++++.+.+++||+|+|.+....++..  .+    .++++.|+||+|++.|++|++.||+||+|||
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~--gg----~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAP   89 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGE--GG----YGYLKEPLWWAGMLTMIVGEIANFAAYAFAP   89 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccC--CC----cchhhhHHHHHHHHHHHHHhHhhHHHHhhch
Confidence            46899999999999999999999999999998764433322  23    3456779999999999999999999999999


Q ss_pred             hHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCCCCCCChHHHHHHhcchhHHHHHHHHHHH
Q 018943           81 QSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVYCLILIFI  160 (348)
Q Consensus        81 ~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~i  160 (348)
                      +++|+|||++++++|.++|++++||+++..+.+||+++++|.+++|.++|++++..|++|+.+++++|.|++|+.+.+++
T Consensus        90 asLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~  169 (335)
T KOG2922|consen   90 ASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILI  169 (335)
T ss_pred             HhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHH
Q 018943          161 VAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSMLLLFFST  240 (348)
Q Consensus       161 ~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~K~~~~~l~~~~~g~~~~~~~~~y~ll~~~~~~  240 (348)
                      ++++++.++.+      +|++       ..+.|..+|+++|++|++++|+++++++.+++|++|+.+|.+|.++.+++.+
T Consensus       170 ~~il~~~~~p~------~g~t-------nilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~  236 (335)
T KOG2922|consen  170 VLILIFFYAPR------YGQT-------NILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATC  236 (335)
T ss_pred             HHHHheeeccc------cccc-------ceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence            77766555432      2433       3799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCCCCccchh
Q 018943          241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGILMSS  320 (348)
Q Consensus       241 ~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~~~~~  320 (348)
                      +.+|++||||||++||++++.|+||++||+.++++|.|+|+||++++..+..++.+|+..++.|+++|.++++.++..++
T Consensus       237 ~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~~~s  316 (335)
T KOG2922|consen  237 VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEISLAS  316 (335)
T ss_pred             HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             hhH
Q 018943          321 LLR  323 (348)
Q Consensus       321 ~~~  323 (348)
                      ..+
T Consensus       317 ~~~  319 (335)
T KOG2922|consen  317 YNS  319 (335)
T ss_pred             ccc
Confidence            665

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=99.10  E-value=3.4e-10  Score=96.08  Aligned_cols=116  Identities=16%  Similarity=0.112  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccc--hhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 018943            6 IGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYH--SWRVGILVFLLGNCLNFISFGYAAQSL   83 (348)
Q Consensus         6 iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p--~w~~G~~~~~~g~~~~~~al~~~p~sl   83 (348)
                      +|.++.+.+.++.+.||.+.|++..+.+..+.   .  ...........+|  .-+.|+.++++++++|..++...|++.
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~---~--~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~   76 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSH---A--WDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSR   76 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccc---h--hHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            36788899999999999999999876532110   0  0000011235567  778999999999999999999999999


Q ss_pred             HhhhhhhHHHHHHHHHHH--HhccccchhhhhHHHHhhhcceeEE
Q 018943           84 LAALGSVQFVSNIAFSYF--VFNKMVTVKVLVATAFIVLGNIFLV  126 (348)
Q Consensus        84 v~Pl~~~~lv~~~~~s~~--~l~e~~~~~~~~g~~li~~G~~~iv  126 (348)
                      ..|+-+..+++..+.+..  ++||+++..++.|+++|++|+.++.
T Consensus        77 Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         77 AYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            999999998888888885  7999999999999999999988754

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.06  E-value=3.3e-08  Score=93.92  Aligned_cols=262  Identities=11%  Similarity=0.040  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhccccCCCCC---------C----CCCccccccccccchh---HHHHHHHHHHHHH
Q 018943            8 AFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---------G----TNGKHSLKPIVHYHSW---RVGILVFLLGNCL   71 (348)
Q Consensus         8 v~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~---------~----~~~~~~~~~~l~~p~w---~~G~~~~~~g~~~   71 (348)
                      .++.+.++++.|..+.+.|+...++..-  ..-.         .    .......+ ..++..|   ..+.........+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   79 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWS-RLPATFWLLLAISAVANMVYFLG   79 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCC-CcchhhHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999664432110  0000         0    00000001 0111122   2233334566777


Q ss_pred             HHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCCCCCCChHHHHHHhcchhHH
Q 018943           72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFL  151 (348)
Q Consensus        72 ~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~t~~el~~~~~~~~fl  151 (348)
                      ...++...|.+..+|+...+-+++.+++.+++|||+++++|.|.++++.|+.++..  +. ....+          +.-.
T Consensus        80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~--~~-~~~~~----------~~g~  146 (281)
T TIGR03340        80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL--SR-FAQHR----------RKAY  146 (281)
T ss_pred             HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cc-ccccc----------hhHH
Confidence            78899999999999999999999999999999999999999999999999887543  21 11111          1111


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCcc-chhHHH
Q 018943          152 VYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQ-LHSWFT  230 (348)
Q Consensus       152 ~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~K~~~~~l~~~~~g~~~-~~~~~~  230 (348)
                      .+.....+.........|+.+.     + .++..   ....+...+-+.++.-.....    ...   ++... ...+..
T Consensus       147 ~~~l~aal~~a~~~i~~k~~~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~  210 (281)
T TIGR03340       147 AWALAAALGTAIYSLSDKAAAL-----G-VPAFY---SALGYLGIGFLAMGWPFLLLY----LKR---HGRSMFPYARQI  210 (281)
T ss_pred             HHHHHHHHHHHHhhhhcccccc-----c-hhccc---ccHHHHHHHHHHHHHHHHHHH----HHH---hccchhhhHHHH
Confidence            1111111111111111222110     0 00000   111111111111111110100    000   11111 111222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhc
Q 018943          231 YSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLL  308 (348)
Q Consensus       231 y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lL  308 (348)
                      +.++.........-..+.++++++.|++.+.|..|. .++++++.|.++++|..+  ..    ...|.++++.|++++
T Consensus       211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l-~pv~a~l~g~~~lgE~~~--~~----~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNT-SIVFAVVLGIWFLNERWY--LT----RLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeeccc-HHHHHHHHHHHHhCCCcc--HH----HHHHHHHHHHhHHhC
Confidence            222222223333333456899999999999999876 589999999999999643  22    346777788888764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.74  E-value=6.6e-08  Score=79.96  Aligned_cols=101  Identities=17%  Similarity=0.145  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhHHHH--HHHHHHHHHHHHHHhhhhhHHHhhh
Q 018943           10 INLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI--LVFLLGNCLNFISFGYAAQSLLAAL   87 (348)
Q Consensus        10 lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~~G~--~~~~~g~~~~~~al~~~p~slv~Pl   87 (348)
                      .-+++.++-..|+.+.|++.+..+    .      +....     ++..+.+.  ..+.++..++..++...|.+..+|+
T Consensus         5 ~l~~ai~~ev~g~~~lK~s~~~~~----~------~~~~~-----~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~   69 (111)
T PRK15051          5 TLVFASLLSVAGQLCQKQATRPVA----I------GKRRK-----HIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPM   69 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCC----c------chhhh-----HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHH
Confidence            445667788889999999844221    0      11011     12334444  6688999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeE
Q 018943           88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (348)
Q Consensus        88 ~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~i  125 (348)
                      .+++++++.+.+.+++|||++.+++.|.++++.|+.++
T Consensus        70 ~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i  107 (111)
T PRK15051         70 LSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL  107 (111)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998764

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.69  E-value=1.3e-06  Score=83.78  Aligned_cols=224  Identities=14%  Similarity=0.088  Sum_probs=134.6

Q ss_pred             hhHHHHHH---HHHHHHHHHHHHhhhhhHHHhhhhh-hHHHHHHHHHHHHhccccchhh----hhHHHHhhhcceeEEee
Q 018943           57 SWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKV----LVATAFIVLGNIFLVSF  128 (348)
Q Consensus        57 ~w~~G~~~---~~~g~~~~~~al~~~p~slv~Pl~~-~~lv~~~~~s~~~l~e~~~~~~----~~g~~li~~G~~~iv~~  128 (348)
                      .|..|++.   ...|+++.+.|.....+++-.|+.. ++++++.+.+.+++||+.++++    +.|.++++.|+.++...
T Consensus        58 ~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~  137 (290)
T TIGR00776        58 IFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS  137 (290)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence            45557766   8899999999999999999999999 8999999999999999999999    99999999998876543


Q ss_pred             cCCCCCCCChHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHH
Q 018943          129 GNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFA  208 (348)
Q Consensus       129 ~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~  208 (348)
                      .++   +...++..   ..+.=+.+..+..+..+......|.-+        .+|.     ...+....|++.+-.+.+.
T Consensus       138 ~~~---~~~~~~~~---~~~~Gi~~~l~sg~~y~~~~~~~~~~~--------~~~~-----~~~~~~~~g~~~~~~~~~~  198 (290)
T TIGR00776       138 KDK---SAGIKSEF---NFKKGILLLLMSTIGYLVYVVVAKAFG--------VDGL-----SVLLPQAIGMVIGGIIFNL  198 (290)
T ss_pred             ccc---cccccccc---chhhHHHHHHHHHHHHHHHHHHHHHcC--------CCcc-----eehhHHHHHHHHHHHHHHH
Confidence            211   11111100   111112222222211111111223211        0011     1222233343333333332


Q ss_pred             HHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCCh
Q 018943          209 KSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDA  288 (348)
Q Consensus       209 K~~~~~l~~~~~g~~~~~~~~~y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~  288 (348)
                      .-.    +   ..  .+.....+..++..+.. ..+..+...+++.+......++.....++++.+.|..+++|..  ++
T Consensus       199 ~~~----~---~~--~~~~~~~~~~~~~Gi~~-~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~--~~  266 (290)
T TIGR00776       199 GHI----L---AK--PLKKYAILLNILPGLMW-GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK--TK  266 (290)
T ss_pred             HHh----c---cc--chHHHHHHHHHHHHHHH-HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC--Cc
Confidence            210    1   11  11222223223333333 4444444577774444455666666779999999999999975  56


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCC
Q 018943          289 LRATMFILGTASVFIGISLLAPD  311 (348)
Q Consensus       289 ~~~~~~~~G~~vi~~GV~lLs~~  311 (348)
                      .++..+.+|+.+++.|+.+.+-.
T Consensus       267 ~~~~~~~iG~~lIi~~~~l~~~~  289 (290)
T TIGR00776       267 REMIAISVGIILIIIAANILGIG  289 (290)
T ss_pred             ceeehhHHHHHHHHHHHHHHhcc
Confidence            78888999999999999987643

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.65  E-value=3.2e-06  Score=81.05  Aligned_cols=206  Identities=15%  Similarity=0.169  Sum_probs=111.9

Q ss_pred             HHHHHHHhh-hhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCCCCCCChHHHHHHhcch
Q 018943           70 CLNFISFGY-AAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNI  148 (348)
Q Consensus        70 ~~~~~al~~-~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~t~~el~~~~~~~  148 (348)
                      .+.+.++.+ .|.+..+-+....-+++.+++++++|||++++++.|.++..+|+.++..  +..+ ..+.+       ..
T Consensus        74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~--~~~~-~~~~~-------~~  143 (299)
T PRK11453         74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE--DSLN-GQHVA-------ML  143 (299)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc--ccCC-Ccchh-------HH
Confidence            344566666 4777777777777789999999999999999999999999999887542  2111 11110       01


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCc-----
Q 018943          149 TFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGY-----  223 (348)
Q Consensus       149 ~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~K~~~~~l~~~~~g~~-----  223 (348)
                      .. .+.....+.........|+..       ++++...   .+.+......+++.-...   .+ ...   ++.+     
T Consensus       144 G~-~l~l~aal~~a~~~v~~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~---~~-~~~---~~~~~~~~~  205 (299)
T PRK11453        144 GF-MLTLAAAFSWACGNIFNKKIM-------SHSTRPA---VMSLVVWSALIPIIPFFV---AS-LIL---DGSATMIHS  205 (299)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHh-------cccCccc---hhHHHHHHHHHHHHHHHH---HH-HHh---cCchhhhhh
Confidence            11 111111111111111223211       0001111   122222222222211110   00 000   1110     


Q ss_pred             -cchhHHHHH-HHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHH
Q 018943          224 -QLHSWFTYS-MLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASV  301 (348)
Q Consensus       224 -~~~~~~~y~-ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi  301 (348)
                       ...++..+. ++...+.+...+....++++++.++..+.++ ....|+++.+.|.++++|..  +..    ..+|..++
T Consensus       206 ~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~~--~~~----~~iG~~lI  278 (299)
T PRK11453        206 LVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERL--TGL----QFLGAVLI  278 (299)
T ss_pred             hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCCc--cHH----HHHHHHHH
Confidence             011233332 3333445556666667999999999887775 55889999999999999964  333    34677778


Q ss_pred             HHhhhhccC
Q 018943          302 FIGISLLAP  310 (348)
Q Consensus       302 ~~GV~lLs~  310 (348)
                      +.|+++...
T Consensus       279 ~~gv~l~~~  287 (299)
T PRK11453        279 MAGLYINVF  287 (299)
T ss_pred             HHHHHHHhc
Confidence            888877653

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.63  E-value=4.4e-06  Score=81.70  Aligned_cols=77  Identities=12%  Similarity=0.253  Sum_probs=65.7

Q ss_pred             ccccchhHHHHH--HHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEee
Q 018943           52 IVHYHSWRVGIL--VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF  128 (348)
Q Consensus        52 ~l~~p~w~~G~~--~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~  128 (348)
                      .+++|.|.-=+.  +.+.|+.+...||.+.+.+-++=+.+.++++++++|.++||||.++.+++|+++++.|+.+++..
T Consensus        74 ~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s  152 (334)
T PF06027_consen   74 VLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS  152 (334)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence            355666643332  34688888999999999999999999999999999999999999999999999999998876553

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.61  E-value=1.7e-05  Score=76.08  Aligned_cols=122  Identities=10%  Similarity=-0.012  Sum_probs=86.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccC----------------CCCCCCCCccccccccccchh----HH
Q 018943            1 MGEWVIGAFINLVGSIAINFGTNLLKLGHIEREKHST----------------LDSDGTNGKHSLKPIVHYHSW----RV   60 (348)
Q Consensus         1 m~~~~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~p~w----~~   60 (348)
                      |.....|.+++++++++.+.....-|... +.+..+.                .-++   +.+..++..+++.+    ..
T Consensus         3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~~-~~~~~~~~~~R~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   78 (296)
T PRK15430          3 AKQTRQGVLLALAAYFIWGIAPAYFKLIY-YVPADEILTHRVIWSFFFMVVLMSICR---QWSYLKTLIQTPQKIFMLAV   78 (296)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHc---cHHHHHHHHcCHHHHHHHHH
Confidence            56667789999999999888888887542 1100000                0000   00000000112222    25


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEE
Q 018943           61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (348)
Q Consensus        61 G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv  126 (348)
                      |...+.++..+.+.++...|.+...-+....=++..+++++++|||+++++|.|.++...|+.++.
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            556677788999999999999999999999989999999999999999999999999999998753

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.58  E-value=1e-05  Score=75.21  Aligned_cols=206  Identities=16%  Similarity=0.122  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCCCCCCC
Q 018943           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT  137 (348)
Q Consensus        58 w~~G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~t  137 (348)
                      -..|.....+...+.+.|+.+.|.+...++.++.=+++.+++..++|||++++++.|..+.+.|+.++...+   +.+.+
T Consensus        50 ~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~---~~~~~  126 (260)
T TIGR00950        50 LLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG---NLSIN  126 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC---ccccc
Confidence            356666677888888999999999999999999999999999999999999999999999999988764321   11110


Q ss_pred             hHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHH--HHHHHHhhhHHHHHHHHHHHHHH
Q 018943          138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFS--YAIVSGAVGSFSVLFAKSLSNLL  215 (348)
Q Consensus       138 ~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~--y~~~sGllgg~tvl~~K~~~~~l  215 (348)
                               .... .+.....+.........|+...      +.++.    ....  +....|   +... ..-      
T Consensus       127 ---------~~G~-~~~l~a~~~~a~~~~~~k~~~~------~~~~~----~~~~~~~~~~~~---~~~l-~~~------  176 (260)
T TIGR00950       127 ---------PAGL-LLGLGSGISFALGTVLYKRLVK------KEGPE----LLQFTGWVLLLG---ALLL-LPF------  176 (260)
T ss_pred             ---------HHHH-HHHHHHHHHHHHHHHHHhHHhh------cCCch----HHHHHHHHHHHH---HHHH-HHH------
Confidence                     0111 1111111111111112232210      00000    0011  111211   1111 100      


Q ss_pred             HHHhcCCccchhHHHHH-HH-HHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHH
Q 018943          216 RLAMSNGYQLHSWFTYS-ML-LLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATM  293 (348)
Q Consensus       216 ~~~~~g~~~~~~~~~y~-ll-~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~  293 (348)
                       ....+.....++..+. ++ ...+.+.+.+ .+.++++++.+++.+..+.+ ..|+.+.+.+.++++|..  ++.+   
T Consensus       177 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~s~~~~-~~pv~~~ll~~~~~~E~~--~~~~---  248 (260)
T TIGR00950       177 -AWFLGPNPQALSLQWGALLYLGLIGTALAY-FLWNKGLTLVDPSAASILAL-AEPLVALLLGLLILGETL--SLPQ---  248 (260)
T ss_pred             -HHhcCCCCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCchHHHHHHH-HHHHHHHHHHHHHhCCCC--CHHH---
Confidence             0012221111333342 22 2222333443 34489999999888777765 788999999999999953  4443   


Q ss_pred             HHHHHHHHHHhh
Q 018943          294 FILGTASVFIGI  305 (348)
Q Consensus       294 ~~~G~~vi~~GV  305 (348)
                       ..|..+++.|+
T Consensus       249 -~~G~~li~~g~  259 (260)
T TIGR00950       249 -LIGGALIIAAV  259 (260)
T ss_pred             -HHHHHHHHHhc
Confidence             35556666664

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.48  E-value=8.8e-06  Score=80.48  Aligned_cols=224  Identities=11%  Similarity=0.154  Sum_probs=117.7

Q ss_pred             HHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHH------hccccchhhhhHHHHhhhcceeEEeecCCC------CCC
Q 018943           68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFV------FNKMVTVKVLVATAFIVLGNIFLVSFGNHQ------SPV  135 (348)
Q Consensus        68 g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~------l~e~~~~~~~~g~~li~~G~~~iv~~~~~~------~~~  135 (348)
                      ...+...++.+.|.+...=+....=++.+++++++      +|||++++++.|.++.++|+.++...+...      +..
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~  170 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY  170 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence            33456789999999999999999999999999999      699999999999999999988654321110      000


Q ss_pred             CChHHHH--HHhcchhHHHHHHHH-HHHHHHH--HHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHHHH
Q 018943          136 YTPEQLA--EKYSNITFLVYCLIL-IFIVAIY--HYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKS  210 (348)
Q Consensus       136 ~t~~el~--~~~~~~~fl~y~~~~-~~i~~~~--~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~K~  210 (348)
                      .+..+..  .......+.....+. ...++..  ....|+..          +++.  ....+....+++++.-....  
T Consensus       171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~----------~~~~--~~~~~t~~~~~~~~~~~~~~--  236 (358)
T PLN00411        171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIM----------SEYP--AAFTVSFLYTVCVSIVTSMI--  236 (358)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHcC--cHhHHHHHHHHHHHHHHHHH--
Confidence            0000000  000011111111111 1111111  11233211          0010  01122222222222211110  


Q ss_pred             HHHHHHHHhcCC--cc-ch--hHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhcccccc
Q 018943          211 LSNLLRLAMSNG--YQ-LH--SWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQV  285 (348)
Q Consensus       211 ~~~~l~~~~~g~--~~-~~--~~~~y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~  285 (348)
                       + ..   .++.  .. ..  ++....++...+.+.+. ..+.|+++++-+++.+ .++.-..|+++++.|.++++|..+
T Consensus       237 -~-l~---~~~~~~~~~~~~~~~~~~~i~y~~i~t~la-y~lw~~~v~~~ga~~a-s~~~~L~PV~a~llg~l~LgE~lt  309 (358)
T PLN00411        237 -G-LV---VEKNNPSVWIIHFDITLITIVTMAIITSVY-YVIHSWTVRHKGPLYL-AIFKPLSILIAVVMGAIFLNDSLY  309 (358)
T ss_pred             -H-HH---HccCCcccceeccchHHHHHHHHHHHHHHH-HHHHHHHHhccCchHH-HHHHhHHHHHHHHHHHHHhCCCCc
Confidence             0 11   1111  11 11  11112222112223322 2246999999988874 455668899999999999999643


Q ss_pred             CChHHHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 018943          286 FDALRATMFILGTASVFIGISLLAPDESKGILM  318 (348)
Q Consensus       286 ~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~~~  318 (348)
                        +.    -.+|.++++.|+++.++.+.+|..+
T Consensus       310 --~~----~~iG~~LIl~Gv~l~~~~~~~~~~~  336 (358)
T PLN00411        310 --LG----CLIGGILITLGFYAVMWGKANEEKD  336 (358)
T ss_pred             --HH----HHHHHHHHHHHHHHHHhhhhhhhhh
Confidence              33    3478888999999887655544433

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=98.45  E-value=1.9e-07  Score=77.22  Aligned_cols=105  Identities=18%  Similarity=0.230  Sum_probs=83.2

Q ss_pred             HHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhh-hhHHHHH
Q 018943           17 AINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-SVQFVSN   95 (348)
Q Consensus        17 ~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~   95 (348)
                      +-+..+-+.||+....++..   ++. +..+..+.+++||..++++++...|++..+..++-+|+|+..|+. +++++++
T Consensus         7 ~WG~Tnpfik~g~~~~~~~~---~~~-~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT   82 (113)
T PF10639_consen    7 LWGCTNPFIKRGSSGLEKVK---ASL-QLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFT   82 (113)
T ss_pred             HhcCchHHHHHHHhhcCCcc---chH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHH
Confidence            33556677888866543211   000 012344568999999999999999999999999999999999995 9999999


Q ss_pred             HHHHHHHhccccchhhhhHHHHhhhcceeE
Q 018943           96 IAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (348)
Q Consensus        96 ~~~s~~~l~e~~~~~~~~g~~li~~G~~~i  125 (348)
                      ++.++++.+|..+++.+.|+.+++.|+.++
T Consensus        83 ~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   83 ALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            999977777777888899999999998875

Many members are annotated as potential transmembrane proteins.

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.45  E-value=1.3e-06  Score=73.24  Aligned_cols=115  Identities=15%  Similarity=0.161  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhcccc------------------CCCCCCCCCccccccccccchhHHHHHHHHHHHH
Q 018943            9 FINLVGSIAINFGTNLLKLGHIEREKHS------------------TLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNC   70 (348)
Q Consensus         9 ~lal~~a~~~a~G~~lqk~a~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~p~w~~G~~~~~~g~~   70 (348)
                      ..|+++|++.+++..+-|-+....+..-                  ...+....+.-..|.++   .-..+-+.-+++.+
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~l---flilSGla~glswl   82 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWL---FLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceeh---hhhHHHHHHHHHHH
Confidence            5788888999999998887754321100                  00000000000111110   11222255568888


Q ss_pred             HHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEE
Q 018943           71 LNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (348)
Q Consensus        71 ~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv  126 (348)
                      +-+.|+.-++.|.|+|+...+.+++.++|..+||||++..+|+|+.+|++|++++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            88999999999999999999999999999999999999999999999999988754

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.39  E-value=2.5e-05  Score=74.84  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhccee
Q 018943           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (348)
Q Consensus        58 w~~G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~  124 (348)
                      ...|+. +.+...++..++.+.+.+..+-+.+.+-+++.+++++++|||++++++.|.++++.|+.+
T Consensus        69 ~~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l  134 (302)
T TIGR00817        69 LPVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVAL  134 (302)
T ss_pred             HHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhh
Confidence            345555 467788889999999999999999999999999999999999999999999999999875

specificities overlap.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.32  E-value=5.4e-05  Score=72.35  Aligned_cols=212  Identities=14%  Similarity=0.055  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHH-hhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCCCCCCC
Q 018943           59 RVGILVFLLGNCLNFISF-GYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT  137 (348)
Q Consensus        59 ~~G~~~~~~g~~~~~~al-~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~t  137 (348)
                      +.|......+..+...+. ...|.....-+..+.=++..+++.+ +|||++++++.|..+.+.|+.++..  ++ +.+. 
T Consensus        73 ~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~--~~-~~~~-  147 (292)
T PRK11272         73 LIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS--GG-NLSG-  147 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc--Cc-cccc-
Confidence            345554455566666776 7888888888888888899999975 7999999999999999999876432  11 1111 


Q ss_pred             hHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 018943          138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRL  217 (348)
Q Consensus       138 ~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~K~~~~~l~~  217 (348)
                       +       .... .+.....+..+......|+..       ++++    .....+....|   +......   . ..  
T Consensus       148 -~-------~~G~-l~~l~a~~~~a~~~~~~~~~~-------~~~~----~~~~~~~~~~~---~~~~~~~---~-~~--  198 (292)
T PRK11272        148 -N-------PWGA-ILILIASASWAFGSVWSSRLP-------LPVG----MMAGAAEMLAA---GVVLLIA---S-LL--  198 (292)
T ss_pred             -c-------hHHH-HHHHHHHHHHHHHHHHHHhcC-------CCcc----hHHHHHHHHHH---HHHHHHH---H-HH--
Confidence             0       0111 111111111111111122211       1100    01122222111   1111010   0 01  


Q ss_pred             HhcCC--ccchhHHHHHH-HHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHH
Q 018943          218 AMSNG--YQLHSWFTYSM-LLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMF  294 (348)
Q Consensus       218 ~~~g~--~~~~~~~~y~l-l~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~  294 (348)
                        .+.  ....++..|.. +...+.+...-..+.|+++++.+++.+... ....|+.+.+.|.++++|..  ++.    .
T Consensus       199 --~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~--t~~----~  269 (292)
T PRK11272        199 --SGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETL--SPI----E  269 (292)
T ss_pred             --cCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCC--cHH----H
Confidence              121  11123344432 222333333444456899999988776655 66889999999999999963  333    3


Q ss_pred             HHHHHHHHHhhhhccCCCC
Q 018943          295 ILGTASVFIGISLLAPDES  313 (348)
Q Consensus       295 ~~G~~vi~~GV~lLs~~~~  313 (348)
                      ..|.++++.|++++++++.
T Consensus       270 iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        270 WLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            4778888999999887654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.32  E-value=5.9e-05  Score=72.24  Aligned_cols=212  Identities=17%  Similarity=0.116  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHhhh----hhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCCCCCC
Q 018943           61 GILVFLLGNCLNFISFGYA----AQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVY  136 (348)
Q Consensus        61 G~~~~~~g~~~~~~al~~~----p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~  136 (348)
                      |...+.....+.+.++.++    |.+...-+..+.=++..++++.++|||++++++.|+++...|+.++...++    ..
T Consensus        67 ~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~----~~  142 (295)
T PRK11689         67 GGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDN----GL  142 (295)
T ss_pred             HhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCc----cc
Confidence            3333444444455555443    444455566677788999999999999999999999999999987653211    01


Q ss_pred             ChHHHHHHhcchhHHHHHHHHHHHHH--HHHHHHHhccccccccCCCchhhhhhhhHHH-HHHHHhhhHHHHHHHHHHHH
Q 018943          137 TPEQLAEKYSNITFLVYCLILIFIVA--IYHYIYRKGENLLAVSGQDNRYWRMLLPFSY-AIVSGAVGSFSVLFAKSLSN  213 (348)
Q Consensus       137 t~~el~~~~~~~~fl~y~~~~~~i~~--~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y-~~~sGllgg~tvl~~K~~~~  213 (348)
                      +.++......+. ............+  ......|+-.       ++   ..   ++.+ ...+    +.....    ..
T Consensus       143 ~~~~~~~~~~~~-~~G~~~~l~aa~~~A~~~v~~k~~~-------~~---~~---~~~~~~~~~----~~~l~~----~~  200 (295)
T PRK11689        143 SLAELINNIASN-PLSYGLAFIGAFIWAAYCNVTRKYA-------RG---KN---GITLFFILT----ALALWI----KY  200 (295)
T ss_pred             hhhhhhhccccC-hHHHHHHHHHHHHHHHHHHHHhhcc-------CC---CC---chhHHHHHH----HHHHHH----HH
Confidence            111110000000 1111111111111  1111223321       00   01   1111 1111    111111    00


Q ss_pred             HHHHHhcCCc-cchhHHHHHHHHH-HHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHH
Q 018943          214 LLRLAMSNGY-QLHSWFTYSMLLL-FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRA  291 (348)
Q Consensus       214 ~l~~~~~g~~-~~~~~~~y~ll~~-~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~  291 (348)
                      ..    ++.. .-.++..+..++. .+.+.+.+ .+.|+++++.+++.+.+. .-..|+++++.|.++++|..  ++.  
T Consensus       201 ~~----~~~~~~~~~~~~~~~l~~~~~~t~~~~-~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~--~~~--  270 (295)
T PRK11689        201 FL----SPQPAMVFSLPAIIKLLLAAAAMGFGY-AAWNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPL--SFS--  270 (295)
T ss_pred             HH----hcCccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCC--cHH--
Confidence            11    1211 1122333322222 23333333 344999999998866555 45789999999999999964  333  


Q ss_pred             HHHHHHHHHHHHhhhhccC
Q 018943          292 TMFILGTASVFIGISLLAP  310 (348)
Q Consensus       292 ~~~~~G~~vi~~GV~lLs~  310 (348)
                        ..+|.++++.|+++...
T Consensus       271 --~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        271 --FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             --HHHHHHHHHHhHHHHhh
Confidence              34677778888766543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.28  E-value=0.00039  Score=66.55  Aligned_cols=263  Identities=14%  Similarity=0.098  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCC-CC--CC---CC-ccccccccccch----hHHHHHHHHHHHHHHH
Q 018943            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD-SD--GT---NG-KHSLKPIVHYHS----WRVGILVFLLGNCLNF   73 (348)
Q Consensus         5 ~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~-~~--~~---~~-~~~~~~~l~~p~----w~~G~~~~~~g~~~~~   73 (348)
                      ..|+.+.+++.++.+.+..+-|.+....+....-- +-  +.   -. .+..+...+++.    ++.|.. +.....+.+
T Consensus        11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~   89 (293)
T PRK10532         11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFY   89 (293)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence            45788889999999999999887654211100000 00  00   00 000000011222    255543 456667778


Q ss_pred             HHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCCCCCCChHHHHHHhcchhHHHH
Q 018943           74 ISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTPEQLAEKYSNITFLVY  153 (348)
Q Consensus        74 ~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~t~~el~~~~~~~~fl~y  153 (348)
                      .++...|.+...-+....=++..+++    +|+.+  ++.+..+.+.|+.++...+.. ....+   .      .+.+ +
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~-~~~~~---~------~G~l-l  152 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQD-VSHVD---L------TGAA-L  152 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCC-cccCC---h------HHHH-H
Confidence            88889888877666655555555555    35543  456677778888775432211 11110   0      0111 1


Q ss_pred             HHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhHHHHHH
Q 018943          154 CLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNGYQLHSWFTYSM  233 (348)
Q Consensus       154 ~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~K~~~~~l~~~~~g~~~~~~~~~y~l  233 (348)
                      .....+..+......|+..      .+.++ .    ...+.   .++++.-. ..  .. ..    .+.....++..+..
T Consensus       153 ~l~aa~~~a~~~v~~r~~~------~~~~~-~----~~~~~---~~~~~~~l-~~--~~-~~----~~~~~~~~~~~~~~  210 (293)
T PRK10532        153 ALGAGACWAIYILSGQRAG------AEHGP-A----TVAIG---SLIAALIF-VP--IG-AL----QAGEALWHWSILPL  210 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHh------ccCCc-h----HHHHH---HHHHHHHH-HH--HH-HH----ccCcccCCHHHHHH
Confidence            1111111111111223321      01111 1    11111   12222111 10  11 01    11111223444432


Q ss_pred             -HHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCC
Q 018943          234 -LLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE  312 (348)
Q Consensus       234 -l~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~  312 (348)
                       +...+.+...+....|+++++.+++.+.+. ....|+++.+.|.++++|..  ++.+    .+|.++++.|+...++.+
T Consensus       211 ~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~--~~~~----~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        211 GLAVAILSTALPYSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETL--TLIQ----WLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCC--cHHH----HHHHHHHHHHHHHHHhcC
Confidence             233445556666677999999999876655 55889999999999999964  4443    356666677777766554


Q ss_pred             CC
Q 018943          313 SK  314 (348)
Q Consensus       313 ~~  314 (348)
                      ++
T Consensus       284 ~~  285 (293)
T PRK10532        284 RR  285 (293)
T ss_pred             CC
Confidence            44

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.27  E-value=0.00022  Score=66.38  Aligned_cols=212  Identities=14%  Similarity=0.162  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHH-HHhccccchhhhhHHHHhhhcceeEEeecCCCCCCCC
Q 018943           59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSY-FVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT  137 (348)
Q Consensus        59 ~~G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~-~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~t  137 (348)
                      ..|......+..+.+.++...|.+..+++.+..-+++.+++. +++|||++++++.|..+...|+.++...+..+...  
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~--  151 (292)
T COG0697          74 LLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL--  151 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH--
Confidence            445555667888889999999999999999999999999997 66799999999999999999988755422221110  


Q ss_pred             hHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHH-HHHHHHhhhHHHHHHHHHHHHHHH
Q 018943          138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFS-YAIVSGAVGSFSVLFAKSLSNLLR  216 (348)
Q Consensus       138 ~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~-y~~~sGllgg~tvl~~K~~~~~l~  216 (348)
                               ...-..+.....+...+.....|+-.       +.++.    .... +...    .......        .
T Consensus       152 ---------~~~g~~~~l~a~~~~a~~~~~~~~~~-------~~~~~----~~~~~~~~~----~~~~~~~--------~  199 (292)
T COG0697         152 ---------SLLGLLLALAAALLWALYTALVKRLS-------RLGPV----TLALLLQLL----LALLLLL--------L  199 (292)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHhc-------CCChH----HHHHHHHHH----HHHHHHH--------H
Confidence                     01111111111111111111222210       00000    0111 1111    0111000        0


Q ss_pred             HHhcCCccchhHHHHHHHHH-HHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHH
Q 018943          217 LAMSNGYQLHSWFTYSMLLL-FFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFI  295 (348)
Q Consensus       217 ~~~~g~~~~~~~~~y~ll~~-~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~  295 (348)
                      ....+.+....+..+..+.. .+.....-..+.+++++..+++.+.|.. ...++.++..+..+++|..  +..+    .
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~--~~~~----~  272 (292)
T COG0697         200 FFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPL--SPAQ----L  272 (292)
T ss_pred             HHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCC--cHHH----H
Confidence            00111111122222322222 2222222334458999999999888876 6677778889999999964  3333    3


Q ss_pred             HHHHHHHHhhhhccCC
Q 018943          296 LGTASVFIGISLLAPD  311 (348)
Q Consensus       296 ~G~~vi~~GV~lLs~~  311 (348)
                      .|..+++.|+.+..++
T Consensus       273 ~G~~li~~g~~l~~~~  288 (292)
T COG0697         273 LGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            5557788888888766

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.21  E-value=0.00049  Score=66.18  Aligned_cols=228  Identities=15%  Similarity=0.138  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCCCCCCC
Q 018943           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYT  137 (348)
Q Consensus        58 w~~G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~t  137 (348)
                      +..+ .++.++..++-.|+.+.|...-.=+-+...+++++++.+++|+|.+++++.+++++++|+.+......++++..+
T Consensus        68 ~~~~-~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~  146 (303)
T PF08449_consen   68 AILS-FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSN  146 (303)
T ss_pred             HHHH-HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccc
Confidence            3444 556688889999999999999999999999999999999999999999999999999999987665443332221


Q ss_pred             hHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHH-HHHHHHHHHHHH
Q 018943          138 PEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFS-VLFAKSLSNLLR  216 (348)
Q Consensus       138 ~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~t-vl~~K~~~~~l~  216 (348)
                      .++     .++.. .++.+..-.++-.... -..|+..+.++.  +.+   ..+.|.-.-|+..... ...-+ -.+. .
T Consensus       147 ~~~-----~~~~~-G~~ll~~sl~~~a~~~-~~qe~~~~~~~~--~~~---~~mfy~n~~~~~~~~~~~~~l~-~~~~-~  212 (303)
T PF08449_consen  147 SSS-----FSSAL-GIILLLLSLLLDAFTG-VYQEKLFKKYGK--SPW---ELMFYTNLFSLPFLLILLFLLP-TGEF-R  212 (303)
T ss_pred             ccc-----ccchh-HHHHHHHHHHHHHHHH-HHHHHHHHHhCC--cHH---HHHHHHHHHHHHHHHHHHHHHH-hhHh-h
Confidence            111     01111 1111111111100000 000111111111  112   2455554444332222 21111 1111 1


Q ss_pred             HHhcCCccchhHHHHHHHHHHH-HHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHH
Q 018943          217 LAMSNGYQLHSWFTYSMLLLFF-STAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFI  295 (348)
Q Consensus       217 ~~~~g~~~~~~~~~y~ll~~~~-~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~  295 (348)
                      ...  +....||..+..++... ...+.| .+.+.-.+++++....=+ ...=...+++.+.++|++  ++++.+++   
T Consensus       213 ~~~--~f~~~~p~~~~~l~~~s~~~~~g~-~~i~~~~~~~~al~~t~v-~t~Rk~~sillS~~~f~~--~~~~~~~~---  283 (303)
T PF08449_consen  213 SAI--RFISAHPSVLLYLLLFSLTGALGQ-FFIFYLIKKFSALTTTIV-TTLRKFLSILLSVIIFGH--PLSPLQWI---  283 (303)
T ss_pred             HHH--HHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCchhhhhH-HHHHHHHHHHHHHHhcCC--cCChHHHH---
Confidence            000  11235666665544433 344555 444566777777664444 344466788899999986  55666654   


Q ss_pred             HHHHHHHHhhhhccC
Q 018943          296 LGTASVFIGISLLAP  310 (348)
Q Consensus       296 ~G~~vi~~GV~lLs~  310 (348)
                       |..+++.|+.+=+.
T Consensus       284 -G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  284 -GIVLVFAGIFLYSY  297 (303)
T ss_pred             -HHHHhHHHHHHHHH
Confidence             44456666655443

; GO: 0055085 transmembrane transport

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.18  E-value=3.5e-06  Score=69.37  Aligned_cols=66  Identities=26%  Similarity=0.425  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEe
Q 018943           61 GILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (348)
Q Consensus        61 G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~  127 (348)
                      |......+..+.+.|+.+.| ..+.|+.+++.+++.+++..++|||++++++.|++++.+|+.++..
T Consensus        41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW  106 (113)
T ss_pred             HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence            44445588999999999999 6899999999999999999999999999999999999999887644

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=98.07  E-value=4e-05  Score=64.30  Aligned_cols=96  Identities=15%  Similarity=0.153  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhh-hh
Q 018943           12 LVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-SV   90 (348)
Q Consensus        12 l~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p~slv~Pl~-~~   90 (348)
                      +.+.++=..|....|++...+            +   +      ..|+..+.+++++..+...++...|+++.+|+- ++
T Consensus         8 ~~Ai~~Ev~~t~~LK~s~g~~------------~---~------~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~Gi   66 (120)
T PRK10452          8 ALAIATEITGTLSMKWASVSE------------G---N------GGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGI   66 (120)
T ss_pred             HHHHHHHHHHHHHHHhhccCC------------C---c------HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence            345566677778888763210            0   1      136777888899999999999999999999994 69


Q ss_pred             HHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEee
Q 018943           91 QFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF  128 (348)
Q Consensus        91 ~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~  128 (348)
                      +.+...+.+.+++||+++..++.|..+++.|++++=..
T Consensus        67 G~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         67 GILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999876443

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.04  E-value=0.00091  Score=65.89  Aligned_cols=68  Identities=16%  Similarity=0.165  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEE
Q 018943           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (348)
Q Consensus        58 w~~G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv  126 (348)
                      ...|+.-. .+......++++.+.+..+=+-+.+=+++++++++++|||++++++.|.+++++|+.+..
T Consensus       118 lp~gl~~~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~  185 (350)
T PTZ00343        118 LPQGLCHL-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS  185 (350)
T ss_pred             HHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence            34444333 234555689999999999999999999999999999999999999999999999998854

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.97  E-value=0.00047  Score=65.47  Aligned_cols=217  Identities=17%  Similarity=0.179  Sum_probs=117.8

Q ss_pred             hhHHHHHH---HHHHHHHHHHHHhhhhhHHHhhhh-hhHHHHHHHHHHHHhccccchhhhh----HHHHhhhcceeEEee
Q 018943           57 SWRVGILV---FLLGNCLNFISFGYAAQSLLAALG-SVQFVSNIAFSYFVFNKMVTVKVLV----ATAFIVLGNIFLVSF  128 (348)
Q Consensus        57 ~w~~G~~~---~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~~~~s~~~l~e~~~~~~~~----g~~li~~G~~~iv~~  128 (348)
                      .|+.+++.   -.+|++.|+.++.....|.--|+. +.+++.|.+.+.++++|.-+..++.    +.+++++|+.+....
T Consensus        44 ~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~  123 (269)
T PF06800_consen   44 SFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQ  123 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccc
Confidence            46666653   468999999999999999999999 5899999999999999998877763    778889998876554


Q ss_pred             cCCCCCCCChHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHH
Q 018943          129 GNHQSPVYTPEQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFA  208 (348)
Q Consensus       129 ~~~~~~~~t~~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~  208 (348)
                      .+++++..+..+.     +...+ ...+.    .+.++.|+.-.+.    .+. ..+....|-..|...   ++.-....
T Consensus       124 ~~~~~~~~~~~~~-----~kgi~-~Ll~s----tigy~~Y~~~~~~----~~~-~~~~~~lPqaiGm~i---~a~i~~~~  185 (269)
T PF06800_consen  124 DKKSDKSSSKSNM-----KKGIL-ALLIS----TIGYWIYSVIPKA----FHV-SGWSAFLPQAIGMLI---GAFIFNLF  185 (269)
T ss_pred             cccccccccccch-----hhHHH-HHHHH----HHHHHHHHHHHHh----cCC-ChhHhHHHHHHHHHH---HHHHHhhc
Confidence            3333322222222     11111 11111    2223333321110    011 112212222222211   11111110


Q ss_pred             HHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCCh
Q 018943          209 KSLSNLLRLAMSNGYQLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDA  288 (348)
Q Consensus       209 K~~~~~l~~~~~g~~~~~~~~~y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~  288 (348)
                      +            .+.+.+..+|.=++..+.-.+.=+.|+ -+-+.--....+|+-|.. .+.+.++|+.+++|..  +.
T Consensus       186 ~------------~~~~~~k~~~~nil~G~~w~ignl~~~-is~~~~G~a~af~lSQ~~-vvIStlgGI~il~E~K--t~  249 (269)
T PF06800_consen  186 S------------KKPFFEKKSWKNILTGLIWGIGNLFYL-ISAQKNGVATAFTLSQLG-VVISTLGGIFILKEKK--TK  249 (269)
T ss_pred             c------------cccccccchHHhhHHHHHHHHHHHHHH-HhHHhccchhhhhHHhHH-HHHHHhhhheEEEecC--ch
Confidence            0            111111222221111111111111111 011122234556677766 6678899999999986  45


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 018943          289 LRATMFILGTASVFIGISL  307 (348)
Q Consensus       289 ~~~~~~~~G~~vi~~GV~l  307 (348)
                      .+.....+|+++++.|.++
T Consensus       250 ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  250 KEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hhHHHHHHHHHHHHHhhhc
Confidence            7888899999999988775

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.96  E-value=7.5e-05  Score=61.71  Aligned_cols=95  Identities=16%  Similarity=0.123  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccch-hHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-h
Q 018943           11 NLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHS-WRVGILVFLLGNCLNFISFGYAAQSLLAAL-G   88 (348)
Q Consensus        11 al~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~-w~~G~~~~~~g~~~~~~al~~~p~slv~Pl-~   88 (348)
                      -+++.++=..|....|++..               .       +++. ++..+.+++++..+...|+...|.++.+|. .
T Consensus         7 L~~a~~~Ev~~~~~lK~s~g---------------f-------~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~   64 (110)
T PRK09541          7 LGGAILAEVIGTTLMKFSEG---------------F-------TRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWS   64 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhcC---------------C-------CchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHH
Confidence            34456666777788887721               1       1122 356667788888888999999999999999 5


Q ss_pred             hhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEe
Q 018943           89 SVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (348)
Q Consensus        89 ~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~  127 (348)
                      +++.+.+.+.+.+++||+++..++.|..+++.|+.++-.
T Consensus        65 GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         65 GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            699999999999999999999999999999999988643

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.75  E-value=0.00021  Score=57.14  Aligned_cols=85  Identities=15%  Similarity=0.111  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhH-HHHHHHHHHHHHHHHHHhhhhhHHHhhhh-h
Q 018943           12 LVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWR-VGILVFLLGNCLNFISFGYAAQSLLAALG-S   89 (348)
Q Consensus        12 l~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~-~G~~~~~~g~~~~~~al~~~p~slv~Pl~-~   89 (348)
                      +++.++-..|+...|+++...                      ++.|. ..+.++.++..+...|+...|.++..|.- +
T Consensus         7 ~~a~~~ev~~~~~lK~s~g~~----------------------~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g   64 (93)
T PF00893_consen    7 LLAILFEVVGTIALKASHGFT----------------------QLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTG   64 (93)
T ss_dssp             HHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhc----------------------chhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            455667777888888753211                      12233 44457888999999999999999999975 5


Q ss_pred             hHHHHHHHHHHHHhccccchhhhhHHHHh
Q 018943           90 VQFVSNIAFSYFVFNKMVTVKVLVATAFI  118 (348)
Q Consensus        90 ~~lv~~~~~s~~~l~e~~~~~~~~g~~li  118 (348)
                      ++.+...+.+.+++||+++..++.|..+|
T Consensus        65 ~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   65 LGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            99999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.68  E-value=0.00091  Score=62.78  Aligned_cols=68  Identities=19%  Similarity=0.384  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEe
Q 018943           60 VGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (348)
Q Consensus        60 ~G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~  127 (348)
                      +=-++|.+.+.+.++++...|.+.-|=+...-++++.+++.++||+|+++++|++..+.++|+.++-.
T Consensus        22 vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~   89 (244)
T PF04142_consen   22 VPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQL   89 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeec
Confidence            34478999999999999999999999999999999999999999999999999999999999887654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=97.66  E-value=0.0081  Score=56.00  Aligned_cols=62  Identities=10%  Similarity=0.026  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEE
Q 018943           65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (348)
Q Consensus        65 ~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv  126 (348)
                      +..+..+.+.++...|.+...-+...+=+++++++++++|||++++++.|.++...|+.++.
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            55778888999999999988888888889999999999999999999999999999988643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=97.66  E-value=0.00021  Score=68.40  Aligned_cols=126  Identities=13%  Similarity=0.061  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCCCC---CC------CCccccccccccc----hhHHHHHHHHHHHHH
Q 018943            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD---GT------NGKHSLKPIVHYH----SWRVGILVFLLGNCL   71 (348)
Q Consensus         5 ~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~---~~------~~~~~~~~~l~~p----~w~~G~~~~~~g~~~   71 (348)
                      .+|.++++.++++.+.+.++.||...+.+.... .-.   +.      .-...........    .++.|+...+++..+
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999998886433211000 000   00      0000000000001    246667777888999


Q ss_pred             HHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCC
Q 018943           72 NFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH  131 (348)
Q Consensus        72 ~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~  131 (348)
                      +..++...|.+.++++..+.-+++.+++.+++||+++..+++|.++++.|+.......++
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999998875443333

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.65  E-value=0.00022  Score=60.07  Aligned_cols=114  Identities=18%  Similarity=0.255  Sum_probs=75.5

Q ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHH--------HHH-----------HhcCCccch---hHHHHHHHHH-HHHHHHHHHH
Q 018943          190 PFSYAIVSGAVGSFSVLFAKSLSNL--------LRL-----------AMSNGYQLH---SWFTYSMLLL-FFSTAGFWMA  246 (348)
Q Consensus       190 ~l~y~~~sGllgg~tvl~~K~~~~~--------l~~-----------~~~g~~~~~---~~~~y~ll~~-~~~~~l~Q~~  246 (348)
                      ...|+..++.++|.+.+++|..-|-        +++           ...|..|-.   ++..|..++. .+.+.+.++.
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~   83 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL   83 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence            4677777888888888888866551        111           113432322   3333333333 3445555544


Q ss_pred             HHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCC
Q 018943          247 RLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPD  311 (348)
Q Consensus       247 ~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~  311 (348)
                      |. +|++.++++.|+|+= -.....++..+..+++|....+.      .+|+.++.+|+++++++
T Consensus        84 Yf-~ALk~G~as~VvPld-k~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs~~  140 (140)
T COG2510          84 YF-RALKKGKASRVVPLD-KTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVSLR  140 (140)
T ss_pred             HH-HHHhcCCcceEEEcc-cccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEecC
Confidence            43 899999999999984 45677788999999999765432      37889999999999864

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.63  E-value=0.0025  Score=62.69  Aligned_cols=299  Identities=9%  Similarity=0.013  Sum_probs=150.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhhhhhh-cc----cc----CCCC-C-CCCCcccccccc---ccchhHHHH---HHH
Q 018943            3 EWVIGAFINLVGSIAINFGTNLLKLGHIER-EK----HS----TLDS-D-GTNGKHSLKPIV---HYHSWRVGI---LVF   65 (348)
Q Consensus         3 ~~~iGv~lal~~a~~~a~G~~lqk~a~~~~-~~----~~----~~~~-~-~~~~~~~~~~~l---~~p~w~~G~---~~~   65 (348)
                      +..+|++..+++.++.+.=.+-|||...-+ |.    ..    .-.. . +.-+.+...+.+   ....|..++   .+-
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W   83 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW   83 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH
Confidence            456799999999999988888888742111 00    00    0000 0 000000001111   122344444   345


Q ss_pred             HHHHHHHHHHHhhhhhHHHhhhhh-hHHHHHHHHHHHHhcccc---chh----hhhHHHHhhhcceeEEeecCCCCCCCC
Q 018943           66 LLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMV---TVK----VLVATAFIVLGNIFLVSFGNHQSPVYT  137 (348)
Q Consensus        66 ~~g~~~~~~al~~~p~slv~Pl~~-~~lv~~~~~s~~~l~e~~---~~~----~~~g~~li~~G~~~iv~~~~~~~~~~t  137 (348)
                      .+|++.++.+..+.-.|+-.|+.. ++++.+.++...+++|--   +..    ...|++++++|+.+....+...|++.+
T Consensus        84 ~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~  163 (345)
T PRK13499         84 GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKMG  163 (345)
T ss_pred             HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence            689999999999999999999987 789999999999998644   322    357999999998886654433333222


Q ss_pred             hHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHhccc---cccccCCCchhhhhhhhHHHHHHHHh-hhHHHHHHHHHHH
Q 018943          138 PEQLAEKYSNITFLVYCLILIF-IVAIYHYIYRKGEN---LLAVSGQDNRYWRMLLPFSYAIVSGA-VGSFSVLFAKSLS  212 (348)
Q Consensus       138 ~~el~~~~~~~~fl~y~~~~~~-i~~~~~~~~r~~~~---~~~~~g~~~~~~~~~~~l~y~~~sGl-lgg~tvl~~K~~~  212 (348)
                      .||-.+.-.+...+ .+.+..+ ..+..... ..++.   ..+..|. ++.+     .......++ +|++..-+.=+..
T Consensus       164 ~~~~~~~~~~KGi~-ialisgi~~~~f~~~~-~~~~~~~~~a~~~g~-~~~~-----~~lp~~~~~~~G~~~~n~~~~~~  235 (345)
T PRK13499        164 IKKAEEFNLKKGLI-LAVMSGIFSACFSFAM-DAGKPMHEAAAALGV-DPLY-----AALPSYVVIMGGGAITNLGFCFI  235 (345)
T ss_pred             cccccccchHhHHH-HHHHHHHHHHHHHHHH-hhccchhhhhhhcCC-CchH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            11000100111222 2222222 22222111 11111   0011122 1111     111122221 2333221111111


Q ss_pred             HHHH-HHhcCCccchh-----HHHHHHHHHHHHHHHHHHHHHhhhhc-cc--cccchhhhHHHHHHHHHHHhhhhhcccc
Q 018943          213 NLLR-LAMSNGYQLHS-----WFTYSMLLLFFSTAGFWMARLNEGLS-LF--DAILIVPMFQIAWTSFSICTGFVYFQEY  283 (348)
Q Consensus       213 ~~l~-~~~~g~~~~~~-----~~~y~ll~~~~~~~l~Q~~~Ln~aL~-~~--d~~~vvP~~~v~~~~~si~~G~i~f~E~  283 (348)
                      .+-+ +..+....+..     +..+++....-+.=-.|..+.=.+-+ ..  .+....++-+....+++.+.|. +++|+
T Consensus       236 ~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~  314 (345)
T PRK13499        236 RLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEW  314 (345)
T ss_pred             HHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhc
Confidence            1111 11110111221     33344333332333445333211111 11  1222445555556677788888 59999


Q ss_pred             ccCChHHHHHHHHHHHHHHHhhhhccC
Q 018943          284 QVFDALRATMFILGTASVFIGISLLAP  310 (348)
Q Consensus       284 ~~~~~~~~~~~~~G~~vi~~GV~lLs~  310 (348)
                      .+.+..+.....+|+++++.|.+++.-
T Consensus       315 K~a~~k~~~~l~~G~vliI~g~~lig~  341 (345)
T PRK13499        315 KGASRRPVRVLSLGCVVIILAANIVGL  341 (345)
T ss_pred             cCCCccchhHHHHHHHHHHHHHHHHhh
Confidence            999899999999999999999998764

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=97.45  E-value=0.00052  Score=55.71  Aligned_cols=68  Identities=16%  Similarity=0.335  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeE
Q 018943           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (348)
Q Consensus        58 w~~G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~i  125 (348)
                      ...|.+...++..+...++...|.+.++++..++-+++.+++..++||+++++++.|+.+++.|+.++
T Consensus        57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            45555556789999999999999999999999999999999999999999999999999999998753

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.41  E-value=0.0011  Score=61.62  Aligned_cols=118  Identities=14%  Similarity=0.085  Sum_probs=84.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCCC---C---------CCCCccccccccccchh----HHHHHHHHH
Q 018943            4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDS---D---------GTNGKHSLKPIVHYHSW----RVGILVFLL   67 (348)
Q Consensus         4 ~~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~---~---------~~~~~~~~~~~l~~p~w----~~G~~~~~~   67 (348)
                      ...|..++++++++.+....++|+...+.+.....-.   .         -....+.... ...+.|    +.|....++
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  204 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQ-ALSLQWGALLYLGLIGTAL  204 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999997543210000000   0         0000000000 011223    244445568


Q ss_pred             HHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcc
Q 018943           68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGN  122 (348)
Q Consensus        68 g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~  122 (348)
                      +..+++.++...|.+.+..+..+.-+++.+++.+++||+++..++.|+.+++.|+
T Consensus       205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            8889999999999999999999999999999999999999999999999999885

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=97.37  E-value=0.00081  Score=66.60  Aligned_cols=117  Identities=12%  Similarity=0.148  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccc-------------------CCCCCCCCCccccccccc-cchhHHHHH
Q 018943            4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHS-------------------TLDSDGTNGKHSLKPIVH-YHSWRVGIL   63 (348)
Q Consensus         4 ~~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~-~p~w~~G~~   63 (348)
                      +.+|.++++.|+++.+++.++||+-..+.....                   ..++.   .   ...+.. -..+...++
T Consensus       187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~---~---~~~~~~~~~~~~~~i~  260 (358)
T PLN00411        187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKN---N---PSVWIIHFDITLITIV  260 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccC---C---cccceeccchHHHHHH
Confidence            577999999999999999999998654321100                   00000   0   000000 011111221


Q ss_pred             H----HHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEE
Q 018943           64 V----FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (348)
Q Consensus        64 ~----~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv  126 (348)
                      .    ..+++.+|..+....+.+.+..+.-+.=+++++++..+++|+++..+++|.++++.|+.+..
T Consensus       261 y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        261 TMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            1    23477778889999999999999999999999999999999999999999999999988754

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.36  E-value=0.0024  Score=52.64  Aligned_cols=97  Identities=12%  Similarity=0.105  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhHHHH-HHHHHHHHHHHHHHhhhhhHHHh
Q 018943            7 GAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGI-LVFLLGNCLNFISFGYAAQSLLA   85 (348)
Q Consensus         7 Gv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~~G~-~~~~~g~~~~~~al~~~p~slv~   85 (348)
                      ....-+++.++=..|....|++.               +       +++|.|...+ ..+.+++.+-..|+...|.++..
T Consensus         8 ~~~~L~~Ai~~Ev~~t~~Lk~s~---------------g-------f~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAY   65 (109)
T PRK10650          8 HAAWLALAIVLEIVANIFLKFSD---------------G-------FRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAY   65 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---------------C-------CcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence            33444566666677888888662               1       1123343333 34566777777889999999999


Q ss_pred             hhhh-hHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeE
Q 018943           86 ALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (348)
Q Consensus        86 Pl~~-~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~i  125 (348)
                      +.=+ ++.+...+.+.+++||+++..++.|..+++.|+..+
T Consensus        66 AvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         66 ALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            9866 889999999999999999999999999999998763

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.19  E-value=0.0033  Score=51.54  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHhhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeE
Q 018943           59 RVGILVFLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (348)
Q Consensus        59 ~~G~~~~~~g~~~~~~al~~~p~slv~Pl~~-~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~i  125 (348)
                      ..-+.++..++.+-..|+...|.++..+.=+ ++.+.+.+.+.+++||+++..++.|..+++.|++.+
T Consensus        33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            3445566778888888999999999998866 899999999999999999999999999999998865

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.07  E-value=0.0026  Score=60.93  Aligned_cols=113  Identities=10%  Similarity=0.059  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccc--------------CCCCCCCCCccccccccccchh----HHHHHHHH
Q 018943            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHS--------------TLDSDGTNGKHSLKPIVHYHSW----RVGILVFL   66 (348)
Q Consensus         5 ~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~p~w----~~G~~~~~   66 (348)
                      ..|..+++.|+++.|.+.++.||-..+.....              ..++    ..  ..+ .....|    +.| ...+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~--~~~-~~~~~~~~l~~~~-~~t~  226 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSP----QP--AMV-FSLPAIIKLLLAA-AAMG  226 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhc----Cc--ccc-CCHHHHHHHHHHH-HHHH
Confidence            45899999999999999999998643221100              0000    00  000 000112    222 2345


Q ss_pred             HHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeE
Q 018943           67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (348)
Q Consensus        67 ~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~i  125 (348)
                      +++.++..++...|.+.+.++..+.-+++.+++..++||+++..+++|.++|+.|+.+.
T Consensus       227 ~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        227 FGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            68888999999999999999999999999999999999999999999999999998764

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.07  E-value=0.0029  Score=60.45  Aligned_cols=114  Identities=11%  Similarity=0.096  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccc-----------------CCCCCCCCCccccccccccchh----HHHHH
Q 018943            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHS-----------------TLDSDGTNGKHSLKPIVHYHSW----RVGIL   63 (348)
Q Consensus         5 ~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~p~w----~~G~~   63 (348)
                      ..|..+++.++++.|.+.+..||...+.+...                 ..++    .. ...+  ....|    +.|+.
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~--~~~~~~~i~~l~i~  221 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGE----RL-TALP--TLSGFLALGYLAVF  221 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCC----cc-cccC--CHHHHHHHHHHHHH
Confidence            46999999999999999999998643211000                 0000    00 0000  00123    23444


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeE
Q 018943           64 VFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (348)
Q Consensus        64 ~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~i  125 (348)
                      ..+++..++..++...|.+.+..+..+.-+++++++.+++||+++..++.|+.+++.|+.+.
T Consensus       222 ~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~  283 (292)
T PRK11272        222 GSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV  283 (292)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            55677888899999999999999999999999999999999999999999999999998764

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.03  E-value=0.0018  Score=61.17  Aligned_cols=217  Identities=17%  Similarity=0.128  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEE----eecCCCCCCCChHHHH
Q 018943           67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV----SFGNHQSPVYTPEQLA  142 (348)
Q Consensus        67 ~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv----~~~~~~~~~~t~~el~  142 (348)
                      .|..+...||.+.|++=..-..-.+=+++.++|+.+||||.|..|.+|......|+++++    +||..++++.+.+   
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~---  185 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ---  185 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc---
Confidence            455666888888888866666666778999999999999999999999999999999886    4666554433222   


Q ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCC
Q 018943          143 EKYSNITFLVYCLILIFIVAIYHYIYRKGENLLAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLLRLAMSNG  222 (348)
Q Consensus       143 ~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~K~~~~~l~~~~~g~  222 (348)
                      .-+..|....-..-+....++ +.+.|+-       |++ .|.  ...+.|=+.-+++-+.           +....-|.
T Consensus       186 ~~~~~~gt~aai~s~lf~asv-yIilR~i-------Gk~-~h~--~msvsyf~~i~lV~s~-----------I~~~~ig~  243 (346)
T KOG4510|consen  186 VEYDIPGTVAAISSVLFGASV-YIILRYI-------GKN-AHA--IMSVSYFSLITLVVSL-----------IGCASIGA  243 (346)
T ss_pred             ccccCCchHHHHHhHhhhhhH-HHHHHHh-------hcc-ccE--EEEehHHHHHHHHHHH-----------HHHhhccc
Confidence            112344432222111212222 2223432       211 111  0112221111111111           10011122


Q ss_pred             ccchh-HHHH-HHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHH
Q 018943          223 YQLHS-WFTY-SMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTAS  300 (348)
Q Consensus       223 ~~~~~-~~~y-~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~v  300 (348)
                      -|+.| +.=+ +++...+.+.+.| .+|.+|+|.=.+-- +.++.....+++.+.-+++|+|+.  +.|.+    +|.+.
T Consensus       244 ~~lP~cgkdr~l~~~lGvfgfigQ-IllTm~lQiErAGp-vaim~~~dvvfAf~wqv~ff~~~P--t~ws~----~Ga~~  315 (346)
T KOG4510|consen  244 VQLPHCGKDRWLFVNLGVFGFIGQ-ILLTMGLQIERAGP-VAIMTYTDVVFAFFWQVLFFGHWP--TIWSW----VGAVM  315 (346)
T ss_pred             eecCccccceEEEEEehhhhhHHH-HHHHHHhhhhccCC-eehhhHHHHHHHHHHHHHHhcCCC--hHHHh----hceee
Confidence            23222 2222 2333345555666 56788888744443 345677788889999999999984  23444    34343


Q ss_pred             HHHhhhhccCCCCCCc
Q 018943          301 VFIGISLLAPDESKGI  316 (348)
Q Consensus       301 i~~GV~lLs~~~~~~~  316 (348)
                      ++..++.-+++|-.+.
T Consensus       316 vvsS~v~~a~~kwa~~  331 (346)
T KOG4510|consen  316 VVSSTVWVALKKWAGT  331 (346)
T ss_pred             eehhHHHHHHHHHhcc
Confidence            4444444444444443

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.96  E-value=0.0079  Score=49.27  Aligned_cols=68  Identities=18%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             hHH-HHHHHHHHHHHHHHHHhhhhhHHHhhhh-hhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeE
Q 018943           58 WRV-GILVFLLGNCLNFISFGYAAQSLLAALG-SVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (348)
Q Consensus        58 w~~-G~~~~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~i  125 (348)
                      |.+ -++.+.+++.+-..|+...|+++.+++= +++.+...+.+..++||+++..+++|..++++|+..+
T Consensus        32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            444 4455677888888899999999998875 4899999999999999999999999999999998764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=96.95  E-value=0.014  Score=48.19  Aligned_cols=80  Identities=16%  Similarity=0.066  Sum_probs=57.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHh
Q 018943          225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIG  304 (348)
Q Consensus       225 ~~~~~~y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~G  304 (348)
                      +++|...........+...-..++..+++.-|.+..+|+.+ .-++.+.+.|..+|+|..  +..    -.+|..+++.|
T Consensus        31 ~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~l--s~~----~~~Gi~lii~G  103 (111)
T PRK15051         31 KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPV--SPR----HWCGVAFIIGG  103 (111)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHHH
Confidence            34554333333333333344566789999999999999999 777788999999999965  444    34677888899


Q ss_pred             hhhccCC
Q 018943          305 ISLLAPD  311 (348)
Q Consensus       305 V~lLs~~  311 (348)
                      +++++++
T Consensus       104 v~~i~~~  110 (111)
T PRK15051        104 IVILGST  110 (111)
T ss_pred             HHHHhcc
Confidence            9988864

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=96.78  E-value=0.0078  Score=57.69  Aligned_cols=121  Identities=12%  Similarity=0.125  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCCCC-C---------------CCCcccc-ccc-cccch-h----HHH
Q 018943            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD-G---------------TNGKHSL-KPI-VHYHS-W----RVG   61 (348)
Q Consensus         5 ~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~-~---------------~~~~~~~-~~~-l~~p~-w----~~G   61 (348)
                      ..|+.+++.++++.+.+..++||...+.+......-. .               .++.... .++ -.++. |    +.|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            3699999999999999999999853221100000000 0               0000000 000 00112 2    234


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeE
Q 018943           62 ILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (348)
Q Consensus        62 ~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~i  125 (348)
                      +...++++.+++.++...+..-+.++..+.=+++.+++.+++||+++..+++|.++++.|+.+.
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~  285 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN  285 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            4455677778888888888889999999999999999999999999999999999999998753

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=96.72  E-value=0.0015  Score=62.09  Aligned_cols=119  Identities=12%  Similarity=0.035  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCCCC-C----CC--Cccc------cccc-ccc-chh---HHHHHHHHH
Q 018943            6 IGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD-G----TN--GKHS------LKPI-VHY-HSW---RVGILVFLL   67 (348)
Q Consensus         6 iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~-~----~~--~~~~------~~~~-l~~-p~w---~~G~~~~~~   67 (348)
                      -|..++++++++.+.+..+.|+.+.+.......... .    ..  ....      ..+. ... +.|   +.+.....+
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l  223 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG  223 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence            366788899999999999888764322110000000 0    00  0000      0000 001 111   333444567


Q ss_pred             HHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhccee
Q 018943           68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (348)
Q Consensus        68 g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~  124 (348)
                      ++.+++.++...|.+.+.++.-++-+++.+++.+++||+++..++.|.++++.|+.+
T Consensus       224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            888899999999999999999999999999999999999999999999999999764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.046  Score=53.54  Aligned_cols=70  Identities=13%  Similarity=0.263  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEE
Q 018943           57 SWRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (348)
Q Consensus        57 ~w~~G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv  126 (348)
                      .|-+=-++|.+-+-++.++++..|.+.-++...+-++.+.+++..+|++|+++++|...++..+|+.++-
T Consensus        94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ  163 (345)
T KOG2234|consen   94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ  163 (345)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence            3455557898888899999999999999999999999999999999999999999999999999988754

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=96.57  E-value=0.049  Score=46.20  Aligned_cols=69  Identities=16%  Similarity=0.236  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhh-hhccccccCChHHHHHHHHHHHHHHHhhhhccCCCCC
Q 018943          240 TAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGF-VYFQEYQVFDALRATMFILGTASVFIGISLLAPDESK  314 (348)
Q Consensus       240 ~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~-i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~  314 (348)
                      +...-..+.+.++++.|.+..+|+....+....+..-. ++|+|..+  ..    -.+|.++++.||+++++++++
T Consensus        57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls--~~----~~iGi~lIi~GV~lv~~~~~~  126 (129)
T PRK02971         57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFS--LK----KTLGVACIMLGVWLINLPTTK  126 (129)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHHHHHHHhccCCCC
Confidence            33444555699999999999999998887544444433 58999653  33    457889999999999976654

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.25  E-value=0.06  Score=45.19  Aligned_cols=67  Identities=15%  Similarity=0.135  Sum_probs=54.0

Q ss_pred             HHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 018943          243 FWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKG  315 (348)
Q Consensus       243 ~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~  315 (348)
                      .-.+++.++++.-|.++.+|+....-++...+.|..+|+|..+  ..    -.+|..+++.|++.+...+++.
T Consensus        42 ~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s--~~----~~~gi~lIi~GVi~l~l~~~~~  108 (120)
T PRK10452         42 LSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLS--LM----KIAGLTTLVAGIVLIKSGTRKA  108 (120)
T ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHHHHHhhcCCCCC
Confidence            3456789999999999999998888888899999999999653  33    3467788999999987655544

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.25  E-value=0.023  Score=46.90  Aligned_cols=81  Identities=9%  Similarity=0.050  Sum_probs=60.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHH
Q 018943          224 QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFI  303 (348)
Q Consensus       224 ~~~~~~~y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~  303 (348)
                      .|++|.+....+..   ...-.+++.++++.-|.++.+|+-...=++...+.|.++|+|..  +..    -.+|..+++.
T Consensus        26 gf~~~~~~i~~~~~---~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~--~~~----~~~gi~lIi~   96 (110)
T PRK09541         26 GFTRLWPSVGTIIC---YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLP----AIIGMMLICA   96 (110)
T ss_pred             CCCchhHHHHHHHH---HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCC--CHH----HHHHHHHHHH
Confidence            36677766543332   23345667899999999999999888888999999999999965  333    3467788999


Q ss_pred             hhhhccCCCC
Q 018943          304 GISLLAPDES  313 (348)
Q Consensus       304 GV~lLs~~~~  313 (348)
                      ||+++...++
T Consensus        97 GVi~l~l~~~  106 (110)
T PRK09541         97 GVLVINLLSR  106 (110)
T ss_pred             HHHHHhcCCC
Confidence            9999965443

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.20  E-value=0.33  Score=46.57  Aligned_cols=77  Identities=18%  Similarity=0.204  Sum_probs=57.2

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHhhhhhH---HHhhhhhh-HHHHHHHHHHHHhccccchhhhhHHHHhhhccee
Q 018943           49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQS---LLAALGSV-QFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (348)
Q Consensus        49 ~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p~s---lv~Pl~~~-~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~  124 (348)
                      .++..|+|+-+....+..+=...|..-+-.+|-.   +=+.+|=. .=++|+++++.++|||+++.+|+.+.+..+|+..
T Consensus        62 ~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~  141 (293)
T COG2962          62 LKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI  141 (293)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            3456778877777777666666677777777655   33344432 2257899999999999999999999999999886


Q ss_pred             E
Q 018943          125 L  125 (348)
Q Consensus       125 i  125 (348)
                      .
T Consensus       142 ~  142 (293)
T COG2962         142 Q  142 (293)
T ss_pred             H
Confidence            4

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=95.85  E-value=0.1  Score=43.06  Aligned_cols=76  Identities=9%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHH
Q 018943          224 QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFI  303 (348)
Q Consensus       224 ~~~~~~~y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~  303 (348)
                      .|++|.+....++..   ..=.+++.++++.-|..+.+|+-...-++...+.|.++|+|..  +..+    .+|..+++.
T Consensus        31 gf~~~~~~~~~~~~~---~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~--~~~~----~~gi~lIi~  101 (109)
T PRK10650         31 GFRRKIYGILSLAAV---LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRL--NRKG----WIGLVLLLA  101 (109)
T ss_pred             CCcchHHHHHHHHHH---HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHH----HHHHHHHHH
Confidence            477777765444433   2335678999999999999999999999999999999999965  3333    366777888


Q ss_pred             hhhhc
Q 018943          304 GISLL  308 (348)
Q Consensus       304 GV~lL  308 (348)
                      ||+.|
T Consensus       102 GVi~l  106 (109)
T PRK10650        102 GMVMI  106 (109)
T ss_pred             HHHHh
Confidence            98876

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=95.83  E-value=0.019  Score=53.21  Aligned_cols=119  Identities=16%  Similarity=0.144  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCC------------CCCCCCccccccccccch--hHHHHHHHHHHHH
Q 018943            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD------------SDGTNGKHSLKPIVHYHS--WRVGILVFLLGNC   70 (348)
Q Consensus         5 ~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~------------~~~~~~~~~~~~~l~~p~--w~~G~~~~~~g~~   70 (348)
                      ..|+.+++.++++.++..++.|+-. +.......-            ........ .....+.-.  -..|+...+++..
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~  230 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAYL  230 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999654 110000000            00000000 000000001  1334444446788


Q ss_pred             HHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeE
Q 018943           71 LNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFL  125 (348)
Q Consensus        71 ~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~i  125 (348)
                      ++..++...|.+.++|+.....+++.+++..+++|+++..++.|+++++.|+.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~  285 (292)
T COG0697         231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLA  285 (292)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999999998764

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.75  E-value=0.11  Score=42.60  Aligned_cols=77  Identities=17%  Similarity=0.059  Sum_probs=59.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHH
Q 018943          224 QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFI  303 (348)
Q Consensus       224 ~~~~~~~y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~  303 (348)
                      .|+++.++.+.++..   ..-.++|.++++.-|..+.+++-...=+..+.+.|..+|+|..  ++.+    .+|+.+++.
T Consensus        25 gf~~~~~~~~~i~~~---~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~--~~~~----~~gi~lIi~   95 (105)
T PRK11431         25 GFSRLTPSIITVTAM---IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESA--SPAR----LLSLALIVA   95 (105)
T ss_pred             CCccHHHHHHHHHHH---HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHHH
Confidence            467777776554433   3335678999999999999999888888999999999999965  3433    366788889


Q ss_pred             hhhhcc
Q 018943          304 GISLLA  309 (348)
Q Consensus       304 GV~lLs  309 (348)
                      ||+.|.
T Consensus        96 GVv~l~  101 (105)
T PRK11431         96 GIIGLK  101 (105)
T ss_pred             HHHhhh
Confidence            999884

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=95.75  E-value=0.019  Score=54.93  Aligned_cols=62  Identities=11%  Similarity=-0.022  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEe
Q 018943           66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (348)
Q Consensus        66 ~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~  127 (348)
                      .++..+++.++...|.+.++++.-++-+++.+++.++++|+++...+.|.++++.|+.++..
T Consensus       224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            37788899999999999999999999999999999999999999999999999888776543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=95.43  E-value=0.036  Score=53.14  Aligned_cols=115  Identities=15%  Similarity=0.151  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCCCC--CCC-----C----ccc--cccccccchh----HHHHHHHHH
Q 018943            5 VIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSD--GTN-----G----KHS--LKPIVHYHSW----RVGILVFLL   67 (348)
Q Consensus         5 ~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~--~~~-----~----~~~--~~~~l~~p~w----~~G~~~~~~   67 (348)
                      ..|+..+++++++.+.-...-|+.+.+     +.+..  ...     +    ..+  .+++. ++.+    ..|+. ..+
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Gi~-~~i  223 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAFGVD-----GLSVLLPQAIGMVIGGIIFNLGHILAKPLK-KYAILLNILPGLM-WGI  223 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCC-----cceehhHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHH-HHH
Confidence            459999999999998888888865311     11100  000     0    000  01111 1122    24444 467


Q ss_pred             HHHHHHHHHh-hhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhh----hHHHHhhhcceeEE
Q 018943           68 GNCLNFISFG-YAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIFLV  126 (348)
Q Consensus        68 g~~~~~~al~-~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~----~g~~li~~G~~~iv  126 (348)
                      ++.+.+.+.. ..+.+...++.....+.+.+.+.+++||+.+++++    .|.++++.|+.++.
T Consensus       224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            7888888888 99999999999999999999999999999999999    99999999987653

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=94.61  E-value=0.32  Score=46.54  Aligned_cols=70  Identities=19%  Similarity=0.273  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEee
Q 018943           59 RVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSF  128 (348)
Q Consensus        59 ~~G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~  128 (348)
                      ..=.++.+.|..+..++|.+..+|--|-+-..-++|.-++|..+||++++.++|+|...+.+|.+.+...
T Consensus        90 l~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~  159 (372)
T KOG3912|consen   90 LPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL  159 (372)
T ss_pred             cChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence            3345788899999999999999999999999999999999999999999999999999999998876553

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=94.34  E-value=0.34  Score=38.52  Aligned_cols=64  Identities=9%  Similarity=0.003  Sum_probs=31.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHH
Q 018943          225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATM  293 (348)
Q Consensus       225 ~~~~~~y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~  293 (348)
                      ++++.+....+.   +-..-..++.+|+++-|.++.+|+....=+....+.|..+|+|..  +..++++
T Consensus        26 ~~~~~~~~~~~~---~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~--s~~~~~g   89 (93)
T PF00893_consen   26 FTQLIPTILAVV---GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESL--SLSKWLG   89 (93)
T ss_dssp             --------HHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_pred             hcchhhHHHHHH---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCC--CHHHHhh
Confidence            455554443322   333445678999999999999999999999999999999999965  4444443

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=94.31  E-value=0.29  Score=41.44  Aligned_cols=58  Identities=19%  Similarity=0.308  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhccee
Q 018943           67 LGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (348)
Q Consensus        67 ~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~  124 (348)
                      +-+...+..+...+...-.=++.+--+.+.+++..+++|+++..++.|..+.+.|..+
T Consensus        93 ~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   93 LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            3444455666666666777788888899999999999999999999999999999764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=94.31  E-value=0.53  Score=38.37  Aligned_cols=63  Identities=19%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             HHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 018943          245 MARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKG  315 (348)
Q Consensus       245 ~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~  315 (348)
                      ....+.|+++.+ ..+.|+ ....++++.+.|.++|+|..  +..    ...|.+++.+|++++.-++..+
T Consensus        49 ~~~~~~a~~~~~-~~v~~i-~~~~pi~~~ll~~~~~~er~--~~~----~~~a~~l~~~Gv~li~~~~~~~  111 (113)
T PF13536_consen   49 YLLFFYALSYAP-ALVAAI-FSLSPIFTALLSWLFFKERL--SPR----RWLAILLILIGVILIAWSDLTG  111 (113)
T ss_pred             HHHHHHHHHhCc-HHHHHH-HHHHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHHHHHhhhhccc
Confidence            344468888888 455544 55699999999999999954  444    3356777889999988766544

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.20  E-value=0.23  Score=47.39  Aligned_cols=67  Identities=13%  Similarity=0.140  Sum_probs=55.4

Q ss_pred             hhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCCCCcc
Q 018943          249 NEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGIL  317 (348)
Q Consensus       249 n~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~~  317 (348)
                      -++.+.-..+...|+-...--+.+.+.|+++|+||...  .+...=.+++++++.|+++-+.++++++.
T Consensus        63 f~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~--~~~~~G~~Al~liiiGv~lts~~~~~~~~  129 (269)
T PF06800_consen   63 FKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTT--TQKIIGFLALVLIIIGVILTSYQDKKSDK  129 (269)
T ss_pred             HHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCc--chHHHHHHHHHHHHHHHHHhccccccccc
Confidence            46777778899999999999999999999999999854  45555567889999999998877666664

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=93.84  E-value=0.24  Score=40.64  Aligned_cols=77  Identities=14%  Similarity=0.135  Sum_probs=56.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHh
Q 018943          225 LHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIG  304 (348)
Q Consensus       225 ~~~~~~y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~G  304 (348)
                      |+++.++.+.+..   ...-..+|.+|++.-|..+.+++-...=+....+.|.++|+|..+  +..    .+|+.++++|
T Consensus        27 f~~~~~~il~~v~---~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~--~~~----~~gl~LiiaG   97 (106)
T COG2076          27 FTRLWPSILTIVG---YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLS--LIK----LLGLALILAG   97 (106)
T ss_pred             ccccchHHHHHHH---HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCC--HHH----HHHHHHHHHH
Confidence            4555555433332   233356688999999999999999999999999999999999653  333    3677788899


Q ss_pred             hhhccC
Q 018943          305 ISLLAP  310 (348)
Q Consensus       305 V~lLs~  310 (348)
                      ++.|-.
T Consensus        98 vi~Lk~  103 (106)
T COG2076          98 VIGLKL  103 (106)
T ss_pred             HHHhhh
Confidence            988754

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=93.79  E-value=0.4  Score=47.16  Aligned_cols=127  Identities=14%  Similarity=0.140  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCc-----c---ccccccccchhHHHHHHH-HHHHHHHH
Q 018943            3 EWVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGK-----H---SLKPIVHYHSWRVGILVF-LLGNCLNF   73 (348)
Q Consensus         3 ~~~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~-----~---~~~~~l~~p~w~~G~~~~-~~g~~~~~   73 (348)
                      ...+|-++++.|+++.|+..++|++-..+.++.+...--|.-+.     .   .-+.-+++-.|=.....+ +...++.+
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf  244 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLF  244 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHH
Confidence            34679999999999999999999987654332110000000000     0   000001111222222223 33344456


Q ss_pred             HHHhhhhhHHH------hhhhh-hHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeec
Q 018943           74 ISFGYAAQSLL------AALGS-VQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFG  129 (348)
Q Consensus        74 ~al~~~p~slv------~Pl~~-~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~  129 (348)
                      .-|...|..+.      .-++- .+-++++++..++.|+++++.-++|.+++++|.++.....
T Consensus       245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            77777777542      12222 3467899999999999999999999999999988765433

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=93.76  E-value=2.4  Score=40.60  Aligned_cols=78  Identities=14%  Similarity=0.331  Sum_probs=59.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhh-HHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCC
Q 018943           55 YHSWRVGILVFLLGNCLNFISFGYAAQ-SLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ  132 (348)
Q Consensus        55 ~p~w~~G~~~~~~g~~~~~~al~~~p~-slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~  132 (348)
                      .+.|..-..++...+++|=.|+.|.=. -+=--+-+-+++.|+.+++.++|+|-+.+++..++.+.+|+++.-.+..++
T Consensus        64 lk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d  142 (330)
T KOG1583|consen   64 LKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKD  142 (330)
T ss_pred             hhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcc
Confidence            346766677777788888777777522 112224567899999999999999999999999999999998876665543

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.16  E-value=0.4  Score=47.56  Aligned_cols=60  Identities=13%  Similarity=0.103  Sum_probs=53.1

Q ss_pred             HHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCC
Q 018943           73 FISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ  132 (348)
Q Consensus        73 ~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~  132 (348)
                      =.||++-.++-..=+.+.+=+|++.++..+.+||+|..+.+++++.+.|++++.....++
T Consensus       177 naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~  236 (416)
T KOG2765|consen  177 NAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ  236 (416)
T ss_pred             HHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence            368999999989999999999999999999999999999999999999988876654444

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=91.40  E-value=0.34  Score=38.89  Aligned_cols=58  Identities=17%  Similarity=0.254  Sum_probs=44.9

Q ss_pred             HHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhcc
Q 018943          245 MARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLA  309 (348)
Q Consensus       245 ~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs  309 (348)
                      ..+.++|+++.+++.+.++.+ ..+..+.+.|.++++|..  +..    ...|..+++.|+++++
T Consensus        68 ~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~--~~~----~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   68 YLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERP--SWR----QIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCC--CHH----HHHHHHHHHHHHHHHH
Confidence            344589999999999998877 799999999999999964  333    3456666777777653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=91.33  E-value=1.2  Score=43.02  Aligned_cols=119  Identities=18%  Similarity=0.094  Sum_probs=72.0

Q ss_pred             hhhHHHHHHHHhhhHHHHHHHHHHHHHHHH-Hh-cCCc---cchhHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhh
Q 018943          188 LLPFSYAIVSGAVGSFSVLFAKSLSNLLRL-AM-SNGY---QLHSWFTYSMLLLFFSTAGFWMARLNEGLSLFDAILIVP  262 (348)
Q Consensus       188 ~~~l~y~~~sGllgg~tvl~~K~~~~~l~~-~~-~g~~---~~~~~~~y~ll~~~~~~~l~Q~~~Ln~aL~~~d~~~vvP  262 (348)
                      ..++..+.++++..+....+.|-....... .. .+.+   .+++|.-|.=++.+....+.+  +  -|+...|++++-|
T Consensus         6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~--~--~Al~~ap~slv~P   81 (300)
T PF05653_consen    6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILN--F--VALGFAPASLVAP   81 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHH--H--HHHHhhhHHHHHH
Confidence            457888888888888888777766544332 00 0111   122233222222223333333  2  4778889999999


Q ss_pred             hHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCCCCcc
Q 018943          263 MFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGIL  317 (348)
Q Consensus       263 ~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~~  317 (348)
                      +-- .-.+++.+.+-.+.+|..+.  .+    ..|+.+++.|+.++.-..|++++
T Consensus        82 lg~-~~lv~~~~~a~~~l~e~~~~--~~----~~G~~l~i~G~~liv~~~~~~~~  129 (300)
T PF05653_consen   82 LGA-LSLVFNAVLARFFLGEKLTR--RD----IVGCALIILGSVLIVIFAPKEEP  129 (300)
T ss_pred             HHh-hhhhhHHHHhHHHhcccchH--hH----HhhHHHHHhhheeeEEeCCCCCC
Confidence            864 44556777778888986543  22    36778888898887766665554

>TIGR00803 nst UDP-galactose transporter

Probab=91.28  E-value=1.2  Score=40.53  Aligned_cols=121  Identities=11%  Similarity=0.046  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccc---------------C--CCCCCCCCccccccccccch-hHHHHHHH
Q 018943            4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHS---------------T--LDSDGTNGKHSLKPIVHYHS-WRVGILVF   65 (348)
Q Consensus         4 ~~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~---------------~--~~~~~~~~~~~~~~~l~~p~-w~~G~~~~   65 (348)
                      -..|+...+.+.++.++..+.|++..++++...               .  ......+.........+.|. +|.=.++.
T Consensus        83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (222)
T TIGR00803        83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLN  162 (222)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHH
Confidence            345667777777778889999988754332100               0  00000000000000111122 23333344


Q ss_pred             HHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhccee
Q 018943           66 LLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (348)
Q Consensus        66 ~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~  124 (348)
                      ..+.++-...+.+++-....=..++..+++.++|.++++|+++...+.|+.++..|+.+
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            56666666788888888889999999999999999999999999999999999888653

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=90.59  E-value=0.23  Score=47.44  Aligned_cols=55  Identities=15%  Similarity=0.232  Sum_probs=47.7

Q ss_pred             HHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhccee
Q 018943           70 CLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (348)
Q Consensus        70 ~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~  124 (348)
                      .+++.++...+.+...-.+.+.=+++.+++.++++|+++..++.|.++++.|+.+
T Consensus       236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l  290 (302)
T TIGR00817       236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFL  290 (302)
T ss_pred             HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHH
Confidence            4445677788888888888888889999999999999999999999999999876

specificities overlap.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=90.06  E-value=2  Score=41.91  Aligned_cols=62  Identities=16%  Similarity=0.249  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEE
Q 018943           65 FLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLV  126 (348)
Q Consensus        65 ~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv  126 (348)
                      +.+|-++.-.++..-|.+..|-.-++.-++++++++++.+|+.++..+.....++.|+.+..
T Consensus        93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias  154 (316)
T KOG1441|consen   93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS  154 (316)
T ss_pred             HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEee
Confidence            35788888899999999999999999999999999999999999999988888888877643

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=89.76  E-value=20  Score=35.43  Aligned_cols=235  Identities=14%  Similarity=0.090  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHhhhhhHHHhhhhh-hHHHHHHHHHHHHhc-------cccchhhhhHHHHhhhcceeEEeecCCCCCCCCh
Q 018943           67 LGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFN-------KMVTVKVLVATAFIVLGNIFLVSFGNHQSPVYTP  138 (348)
Q Consensus        67 ~g~~~~~~al~~~p~slv~Pl~~-~~lv~~~~~s~~~l~-------e~~~~~~~~g~~li~~G~~~iv~~~~~~~~~~t~  138 (348)
                      +|.+..=.+..+.-.|+-+...- ++.++..++-+.+.+       .+-...-.+|++++++|+.++...|...|.+.+.
T Consensus        85 IGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~  164 (344)
T PF06379_consen   85 IGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGE  164 (344)
T ss_pred             cchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhcc
Confidence            34433344555555565555432 344444444444433       2223455689999999988876655433333221


Q ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhcccc---ccccCCCchhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q 018943          139 EQLAEKYSNITFLVYCLILIFIVAIYHYIYRKGENL---LAVSGQDNRYWRMLLPFSYAIVSGAVGSFSVLFAKSLSNLL  215 (348)
Q Consensus       139 ~el~~~~~~~~fl~y~~~~~~i~~~~~~~~r~~~~~---~~~~g~~~~~~~~~~~l~y~~~sGllgg~tvl~~K~~~~~l  215 (348)
                       |-.+.-.+...++-...-+.-.|+.+.+ ..++..   ....|. ++-+.........    +.||+..-+.=++....
T Consensus       165 -~~~efn~~kGl~iAv~sGv~Sa~fn~g~-~ag~pi~~~a~a~G~-~~l~~~l~~~vvv----~~GGf~tN~~yc~~~l~  237 (344)
T PF06379_consen  165 -EAKEFNFKKGLIIAVLSGVMSACFNFGL-DAGKPIHEAAVAAGV-NPLYANLPVYVVV----LWGGFITNLIYCLILLA  237 (344)
T ss_pred             -chhhhhhhhhHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHcCC-CcHHHhCchhhhh----hhhHHHHHHHHHHHHHh
Confidence             1112111222222222222223333221 222110   011122 1222211112222    33555555555544433


Q ss_pred             H-HHhc--CCccc-hhH--HHHHHHHHHHHHHHHHHHHHhhhhcc-cc--ccchhhhHHHHHHHHHHHhhhhhccccccC
Q 018943          216 R-LAMS--NGYQL-HSW--FTYSMLLLFFSTAGFWMARLNEGLSL-FD--AILIVPMFQIAWTSFSICTGFVYFQEYQVF  286 (348)
Q Consensus       216 ~-~~~~--g~~~~-~~~--~~y~ll~~~~~~~l~Q~~~Ln~aL~~-~d--~~~vvP~~~v~~~~~si~~G~i~f~E~~~~  286 (348)
                      + ++.+  +|... +++  .-|++.++.-+.=..|..|.-.|=.. .+  ....-++...+..+++.+.| +..+||.+.
T Consensus       238 ~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG-l~lkEWKg~  316 (344)
T PF06379_consen  238 KNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG-LILKEWKGA  316 (344)
T ss_pred             hcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH-HHHHHhccC
Confidence            2 1222  22211 222  22444444444557887776544433 22  25577888888888888888 568999999


Q ss_pred             ChHHHHHHHHHHHHHHHhhhhcc
Q 018943          287 DALRATMFILGTASVFIGISLLA  309 (348)
Q Consensus       287 ~~~~~~~~~~G~~vi~~GV~lLs  309 (348)
                      +....-.+.+|+++++..++++.
T Consensus       317 s~kt~~vl~~G~~vlI~s~~ivG  339 (344)
T PF06379_consen  317 SKKTIRVLVLGIAVLILSVVIVG  339 (344)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Confidence            98888888999999998888765

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=89.57  E-value=0.14  Score=41.80  Aligned_cols=77  Identities=19%  Similarity=0.299  Sum_probs=61.2

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhhh-hhHHHHHHHHHHHHhcccc-chhhhhHHHHhhhcceeEE
Q 018943           49 LKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAALG-SVQFVSNIAFSYFVFNKMV-TVKVLVATAFIVLGNIFLV  126 (348)
Q Consensus        49 ~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p~slv~Pl~-~~~lv~~~~~s~~~l~e~~-~~~~~~g~~li~~G~~~iv  126 (348)
                      .+.++.|-..++=+++--.|+.+-+.-|+-+|.++..|.. ++++.|+.+++..+ +|+. .++.+.|+.+++.|+.+.+
T Consensus        46 ~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   46 MKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhee
Confidence            3445555566778888888999999999999999999986 57899999999765 5555 5666789999999987643

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=88.90  E-value=1.8  Score=35.88  Aligned_cols=53  Identities=26%  Similarity=0.224  Sum_probs=42.5

Q ss_pred             hhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhh
Q 018943          249 NEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISL  307 (348)
Q Consensus       249 n~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~l  307 (348)
                      .-.|...|-+..+|+.++.--+++.+.|..+.+|..+-.      -.+|..+++.|+.+
T Consensus        59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL  111 (113)
T ss_pred             HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence            346778999999999999999999999988888865332      24778888888875

Many members are annotated as potential transmembrane proteins.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=88.27  E-value=18  Score=33.18  Aligned_cols=60  Identities=12%  Similarity=0.110  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEe
Q 018943           68 GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (348)
Q Consensus        68 g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~  127 (348)
                      .+.....||-..+.+.+..+.+..-.|..+++...+|+|+..-+++.+++.+.|++++..
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay  125 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY  125 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence            344457788899999999999999999999999999999999999999999999887654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=87.13  E-value=1.6  Score=41.23  Aligned_cols=121  Identities=11%  Similarity=-0.002  Sum_probs=82.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhhhhhh-ccccC------------CCCCCCCCccccccccccchhHHHHHHHHH--
Q 018943            3 EWVIGAFINLVGSIAINFGTNLLKLGHIER-EKHST------------LDSDGTNGKHSLKPIVHYHSWRVGILVFLL--   67 (348)
Q Consensus         3 ~~~iGv~lal~~a~~~a~G~~lqk~a~~~~-~~~~~------------~~~~~~~~~~~~~~~l~~p~w~~G~~~~~~--   67 (348)
                      ...+|+.+|+.+..+-+.=.+.-||..... .....            +--..+.+...+.    -+.-..+...-++  
T Consensus       145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~----p~ll~laLgvavlSS  220 (292)
T COG5006         145 LDPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFS----PSLLPLALGVAVLSS  220 (292)
T ss_pred             CCHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcC----hHHHHHHHHHHHHhc
Confidence            356899999999999887777777665211 00000            0000001111111    1233444444444  


Q ss_pred             --HHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEe
Q 018943           68 --GNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (348)
Q Consensus        68 --g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~  127 (348)
                        =+.+..+|+...|...-.-+.++.=.+..+.+..+|||++|..+|+|+++++.++.....
T Consensus       221 alPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l  282 (292)
T COG5006         221 ALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL  282 (292)
T ss_pred             ccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence              456778999999999999999999999999999999999999999999999998876544

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=87.09  E-value=4.2  Score=33.18  Aligned_cols=48  Identities=21%  Similarity=0.285  Sum_probs=38.8

Q ss_pred             HHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCC
Q 018943           83 LLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH  131 (348)
Q Consensus        83 lv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~  131 (348)
                      +-+--|.+=++.+++-....-|.++++.||.|...|.+|+.+ +.++|.
T Consensus        60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~v-il~~pR  107 (109)
T COG1742          60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAV-ILFGPR  107 (109)
T ss_pred             HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceee-eEeCCC
Confidence            345567777788888888888999999999999999999665 456664

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=85.33  E-value=0.47  Score=44.64  Aligned_cols=62  Identities=15%  Similarity=0.193  Sum_probs=51.8

Q ss_pred             hhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCC
Q 018943          250 EGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDES  313 (348)
Q Consensus       250 ~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~  313 (348)
                      ||.+.-..+.-.|+-+...-+.+.+.|+++||||.+  +.+.+.=+.+.++++.|+++=+.+++
T Consensus        78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t--~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTT--PTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hheeeeeeeccccccchhhHhhceeeeEEEEeccCc--chhHHHHHHHHHHHHHhheEeeeecc
Confidence            678888888899999999999999999999999975  45676667778889999998776554

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=85.13  E-value=36  Score=32.48  Aligned_cols=62  Identities=11%  Similarity=0.048  Sum_probs=41.6

Q ss_pred             HhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCC
Q 018943          248 LNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDES  313 (348)
Q Consensus       248 Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~  313 (348)
                      -+-||++-++.. .-+..+.++..+-..|.+++||..  ++.|+..+.+= .....|+.+=.|+++
T Consensus       227 EmiAL~rlp~~~-F~~LlSLePa~aAl~G~i~L~e~l--s~~qwlaI~~V-iaAsaG~~lt~~~~~  288 (292)
T COG5006         227 EMIALRRLPART-FGTLLSLEPALAALSGLIFLGETL--TLIQWLAIAAV-IAASAGSTLTARKPA  288 (292)
T ss_pred             HHHHHhhCChhH-HHHHHHhhHHHHHHHHHHHhcCCC--CHHHHHHHHHH-HHHHhccccccCCCC
Confidence            467888776654 567788999999999999999975  55666543332 234456555444443

>PRK13499 rhamnose-proton symporter; Provisional

Probab=81.99  E-value=6.1  Score=39.12  Aligned_cols=69  Identities=10%  Similarity=0.042  Sum_probs=54.1

Q ss_pred             HHHHHHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhcccccc-CChHHHHHHHHHHHHHHHhhhhccC
Q 018943          241 AGFWMARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQV-FDALRATMFILGTASVFIGISLLAP  310 (348)
Q Consensus       241 ~l~Q~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~-~~~~~~~~~~~G~~vi~~GV~lLs~  310 (348)
                      .+.|+.+ =++.++--.+.-.|+....-.+.+.+.+.++++||.. .+..+......|++++++|+++-++
T Consensus        84 ~iG~i~~-~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         84 GIGGITY-GLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HhhhhhH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3444333 3677778888899999999999999999999999961 1223445578999999999999987

>PRK02237 hypothetical protein; Provisional

Probab=81.95  E-value=5.9  Score=32.58  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=37.9

Q ss_pred             HhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCC
Q 018943           84 LAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH  131 (348)
Q Consensus        84 v~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~  131 (348)
                      -+--|.+=++.+++-.+..-|+|+++.|++|.+++.+|+.++. ++|.
T Consensus        62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~pR  108 (109)
T PRK02237         62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAPR  108 (109)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecCC
Confidence            3445666677788889999999999999999999999987653 5654

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=81.08  E-value=13  Score=36.09  Aligned_cols=74  Identities=12%  Similarity=0.177  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCCC
Q 018943           58 WRVGILVFLLGNCLNFISFGYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNHQ  132 (348)
Q Consensus        58 w~~G~~~~~~g~~~~~~al~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~~  132 (348)
                      |.+++. -.++.-++..||.+.+.-...=-=+.=++-.++++.++-|+|.+..|.+.+.+|.+|+.++..+.+.+
T Consensus        87 ~~is~t-n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~  160 (327)
T KOG1581|consen   87 SLISFT-NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD  160 (327)
T ss_pred             hHHHHH-hhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence            344433 34788888899988876544333445578889999999999999999999999999999988875554

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=80.72  E-value=6.9  Score=37.46  Aligned_cols=121  Identities=13%  Similarity=0.095  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhccccCCC----CC--------------CCCCccccccccccchhHHHHHHH
Q 018943            4 WVIGAFINLVGSIAINFGTNLLKLGHIEREKHSTLD----SD--------------GTNGKHSLKPIVHYHSWRVGILVF   65 (348)
Q Consensus         4 ~~iGv~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~----~~--------------~~~~~~~~~~~l~~p~w~~G~~~~   65 (348)
                      +..|+++.+++-++.++-.+.|+|-..+.+.++.+.    +.              .++..+..+-..+.|..+.-+.+.
T Consensus       152 ~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~  231 (303)
T PF08449_consen  152 SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF  231 (303)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence            445999999999999999999998876543321000    00              000000111122334333333332


Q ss_pred             -HHHHHHHHHHH---hhhhhHHHhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhccee
Q 018943           66 -LLGNCLNFISF---GYAAQSLLAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIF  124 (348)
Q Consensus        66 -~~g~~~~~~al---~~~p~slv~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~  124 (348)
                       ..+.+++...+   ..-......=...+--+.++++|..+.+++++...|.|.+++..|..+
T Consensus       232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~  294 (303)
T PF08449_consen  232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFL  294 (303)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHH
Confidence             33444442222   122222333344455678889999999999999999999999988664

; GO: 0055085 transmembrane transport

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=80.56  E-value=5  Score=32.90  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=38.2

Q ss_pred             HhhhhhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEeecCC
Q 018943           84 LAALGSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVSFGNH  131 (348)
Q Consensus        84 v~Pl~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~~~~~  131 (348)
                      -+--|.+=++.+++-.+..-|+++++.|++|..+|..|+.++ .++|.
T Consensus        60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI-~~~PR  106 (107)
T PF02694_consen   60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII-LFAPR  106 (107)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe-EecCC
Confidence            344566667788888999999999999999999999998865 45554

; GO: 0016020 membrane

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=80.19  E-value=1.6  Score=41.23  Aligned_cols=74  Identities=22%  Similarity=0.358  Sum_probs=59.1

Q ss_pred             chhHHHHHH---HHHHHHHHHHHHhhhhhHHHhhhhh-hHHHHHHHHHHHHhccccchhhh----hHHHHhhhcceeEEe
Q 018943           56 HSWRVGILV---FLLGNCLNFISFGYAAQSLLAALGS-VQFVSNIAFSYFVFNKMVTVKVL----VATAFIVLGNIFLVS  127 (348)
Q Consensus        56 p~w~~G~~~---~~~g~~~~~~al~~~p~slv~Pl~~-~~lv~~~~~s~~~l~e~~~~~~~----~g~~li~~G~~~iv~  127 (348)
                      ..|+.|++.   -.+|...|+-|......|...|+.. .+++.+.+++.+.+||--+..+.    ...++++.|+.+-..
T Consensus        57 ~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~  136 (288)
T COG4975          57 TIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSK  136 (288)
T ss_pred             hhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeee
Confidence            357777754   3578888999999999999999987 78999999999999999887764    456788888777554


Q ss_pred             ec
Q 018943          128 FG  129 (348)
Q Consensus       128 ~~  129 (348)
                      -.
T Consensus       137 ~~  138 (288)
T COG4975         137 QD  138 (288)
T ss_pred             ec
Confidence            33

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.87
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.75
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.37
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.25

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.87  E-value=9.1e-09  Score=83.70  Aligned_cols=98  Identities=15%  Similarity=0.146  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-
Q 018943            9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL-   87 (348)
Q Consensus         9 ~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p~slv~Pl-   87 (348)
                      ++.+++.++-+.|+.+.|++..                 ..    +.+.++.+..++++++.+...++...|.+.+.|+ 
T Consensus         5 l~l~~a~~~e~~~~~~lK~s~~-----------------~~----~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~   63 (110)
T 3b5d_A            5 IYLGGAILAEVIGTTLMKFSEG-----------------FT----RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW   63 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhccC-----------------cc----hHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence            4556788889999999998721                 00    1234678888899999999999999999999999 


Q ss_pred             hhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEe
Q 018943           88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (348)
Q Consensus        88 ~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~  127 (348)
                      .+++.+++.+++.+++||++++.++.|..+++.|+.++..
T Consensus        64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (110)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999887644

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.75  E-value=8e-09  Score=87.37  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-
Q 018943            9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL-   87 (348)
Q Consensus         9 ~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p~slv~Pl-   87 (348)
                      ++.+++.++-+.|+.+.|++..               .  .    +.+.++.|++++++++.++..++...|.+.++|+ 
T Consensus         5 l~Ll~ail~ev~~~~~lK~s~g---------------~--~----~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw   63 (137)
T 2i68_A            5 IYLGGAILAEVIGTTLMKFSEG---------------F--T----RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW   63 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc---------------c--c----hHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence            3456778889999999998731               0  0    1234678999999999999999999999999999 


Q ss_pred             hhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEe
Q 018943           88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS  127 (348)
Q Consensus        88 ~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~  127 (348)
                      .+++.+++.+++.+++||+++..+++|++++++|+.++..
T Consensus        64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL  103 (137)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999887644

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.37  E-value=0.00041  Score=58.33  Aligned_cols=62  Identities=10%  Similarity=0.097  Sum_probs=43.6

Q ss_pred             HHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCC
Q 018943          245 MARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE  312 (348)
Q Consensus       245 ~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~  312 (348)
                      ..++++++++.|.+..+|+....-++.+.+.|.++|+|..+.  .    -.+|.++++.||+++.+.+
T Consensus        44 ~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~--~----~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL--P----AIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHHHHHHhcCC
Confidence            456799999999999999988899999999999999996533  2    3478888999999997654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.25  E-value=0.0029  Score=50.85  Aligned_cols=63  Identities=11%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             HHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCC
Q 018943          245 MARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDES  313 (348)
Q Consensus       245 ~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~  313 (348)
                      ..++++++++.|.+..+|+....-++.+.+.|.++|+|..  +..+    .+|..+++.||+++...++
T Consensus        44 ~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~--s~~~----~~Gi~lIi~Gv~~l~~~~~  106 (110)
T 3b5d_A           44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLPA----IIGMMLICAGVLIINLLSR  106 (110)
T ss_pred             HHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHHHHHHHHhcCCC
Confidence            4567899999999999999989999999999999999964  4443    5788889999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00