Citrus Sinensis ID: 018949
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 348 | 2.2.26 [Sep-21-2011] | |||||||
| B3ETC6 | 296 | GTPase Era OS=Amoebophilu | yes | no | 0.643 | 0.756 | 0.401 | 9e-46 | |
| P64086 | 299 | GTPase Era OS=Staphylococ | yes | no | 0.603 | 0.702 | 0.446 | 3e-44 | |
| A8Z4A6 | 299 | GTPase Era OS=Staphylococ | yes | no | 0.603 | 0.702 | 0.446 | 3e-44 | |
| Q6G900 | 299 | GTPase Era OS=Staphylococ | yes | no | 0.603 | 0.702 | 0.446 | 3e-44 | |
| Q6GGD3 | 299 | GTPase Era OS=Staphylococ | yes | no | 0.603 | 0.702 | 0.446 | 3e-44 | |
| P64085 | 299 | GTPase Era OS=Staphylococ | yes | no | 0.603 | 0.702 | 0.446 | 3e-44 | |
| P64084 | 299 | GTPase Era OS=Staphylococ | yes | no | 0.603 | 0.702 | 0.446 | 3e-44 | |
| A6QHB0 | 299 | GTPase Era OS=Staphylococ | yes | no | 0.603 | 0.702 | 0.446 | 3e-44 | |
| Q5HFJ3 | 299 | GTPase Era OS=Staphylococ | yes | no | 0.603 | 0.702 | 0.446 | 3e-44 | |
| A5IT95 | 299 | GTPase Era OS=Staphylococ | yes | no | 0.603 | 0.702 | 0.446 | 3e-44 |
| >sp|B3ETC6|ERA_AMOA5 GTPase Era OS=Amoebophilus asiaticus (strain 5a2) GN=era PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 184 bits (467), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 153/234 (65%), Gaps = 10/234 (4%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
H++G+V ++GKPNVGKSTL N+++G++LSI+T K QTTRH I GI S ++Q+I DTPG
Sbjct: 6 HQAGFVTIIGKPNVGKSTLMNRLVGERLSIITPKAQTTRHSICGIVSDTDFQIIFTDTPG 65
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDA--CKAPERIDEILEEGVGDHKDKLPIL 230
I+ K + L MM ++ A ++ D ++ LVD + P ++++L +G ++P+L
Sbjct: 66 IL-KPAYELQESMMHMLQHALVDTDVLLWLVDIKEKEVPPIVEKVLAQG------RIPVL 118
Query: 231 LVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289
L++NK DLI E + L E++++ +V ++IP++A G +E + IL LP P +Y
Sbjct: 119 LLINKIDLIAGQEALESLVEYWKQKVNVAQIIPIAALQGFQIEQLLKHILVYLPAHPPFY 178
Query: 290 PKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWLIFVEFNAFL 343
PKD++++ PERFFV EIIRE+I +Y+ E+PYA +V F+ + +A +
Sbjct: 179 PKDMLTDRPERFFVAEIIREQILYKYQQEIPYAVEVVIEEFKEEASLIRISAMI 232
|
An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. Amoebophilus asiaticus (strain 5a2) (taxid: 452471) |
| >sp|P64086|ERA_STAAW GTPase Era OS=Staphylococcus aureus (strain MW2) GN=era PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 139/213 (65%), Gaps = 3/213 (1%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
HKSG+V+++G+PNVGKST N++IG K++I+++K QTTR++I G+ + + Q+I DTPG
Sbjct: 4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPG 63
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K H L MMK ++ D I+ +V+A + R DE + E + + K P+ LV
Sbjct: 64 IHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVK--TPVFLV 120
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
LNK DL+ P E+ K+E Y+ + D E++P+SA G V+ D + T LP GP YYP D
Sbjct: 121 LNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDD 180
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+S+HPE+F VGEIIREKI E+P+A V
Sbjct: 181 QISDHPEQFVVGEIIREKILHLTSEEIPHAIGV 213
|
An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. Staphylococcus aureus (strain MW2) (taxid: 196620) |
| >sp|A8Z4A6|ERA_STAAT GTPase Era OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=era PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 139/213 (65%), Gaps = 3/213 (1%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
HKSG+V+++G+PNVGKST N++IG K++I+++K QTTR++I G+ + + Q+I DTPG
Sbjct: 4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPG 63
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K H L MMK ++ D I+ +V+A + R DE + E + + K P+ LV
Sbjct: 64 IHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVK--TPVFLV 120
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
LNK DL+ P E+ K+E Y+ + D E++P+SA G V+ D + T LP GP YYP D
Sbjct: 121 LNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDD 180
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+S+HPE+F VGEIIREKI E+P+A V
Sbjct: 181 QISDHPEQFVVGEIIREKILHLTSEEIPHAIGV 213
|
An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516) |
| >sp|Q6G900|ERA_STAAS GTPase Era OS=Staphylococcus aureus (strain MSSA476) GN=era PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 139/213 (65%), Gaps = 3/213 (1%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
HKSG+V+++G+PNVGKST N++IG K++I+++K QTTR++I G+ + + Q+I DTPG
Sbjct: 4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPG 63
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K H L MMK ++ D I+ +V+A + R DE + E + + K P+ LV
Sbjct: 64 IHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVK--TPVFLV 120
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
LNK DL+ P E+ K+E Y+ + D E++P+SA G V+ D + T LP GP YYP D
Sbjct: 121 LNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDD 180
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+S+HPE+F VGEIIREKI E+P+A V
Sbjct: 181 QISDHPEQFVVGEIIREKILHLTSEEIPHAIGV 213
|
An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. Staphylococcus aureus (strain MSSA476) (taxid: 282459) |
| >sp|Q6GGD3|ERA_STAAR GTPase Era OS=Staphylococcus aureus (strain MRSA252) GN=era PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 139/213 (65%), Gaps = 3/213 (1%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
HKSG+V+++G+PNVGKST N++IG K++I+++K QTTR++I G+ + + Q+I DTPG
Sbjct: 4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPG 63
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K H L MMK ++ D I+ +V+A + R DE + E + + K P+ LV
Sbjct: 64 IHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVK--TPVFLV 120
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
LNK DL+ P E+ K+E Y+ + D E++P+SA G V+ D + T LP GP YYP D
Sbjct: 121 LNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDD 180
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+S+HPE+F VGEIIREKI E+P+A V
Sbjct: 181 QISDHPEQFVVGEIIREKILHLTSEEIPHAIGV 213
|
An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. Staphylococcus aureus (strain MRSA252) (taxid: 282458) |
| >sp|P64085|ERA_STAAN GTPase Era OS=Staphylococcus aureus (strain N315) GN=era PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 139/213 (65%), Gaps = 3/213 (1%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
HKSG+V+++G+PNVGKST N++IG K++I+++K QTTR++I G+ + + Q+I DTPG
Sbjct: 4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPG 63
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K H L MMK ++ D I+ +V+A + R DE + E + + K P+ LV
Sbjct: 64 IHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVK--TPVFLV 120
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
LNK DL+ P E+ K+E Y+ + D E++P+SA G V+ D + T LP GP YYP D
Sbjct: 121 LNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDD 180
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+S+HPE+F VGEIIREKI E+P+A V
Sbjct: 181 QISDHPEQFVVGEIIREKILHLTSEEIPHAIGV 213
|
An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. Staphylococcus aureus (strain N315) (taxid: 158879) |
| >sp|P64084|ERA_STAAM GTPase Era OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=era PE=1 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 139/213 (65%), Gaps = 3/213 (1%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
HKSG+V+++G+PNVGKST N++IG K++I+++K QTTR++I G+ + + Q+I DTPG
Sbjct: 4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPG 63
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K H L MMK ++ D I+ +V+A + R DE + E + + K P+ LV
Sbjct: 64 IHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVK--TPVFLV 120
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
LNK DL+ P E+ K+E Y+ + D E++P+SA G V+ D + T LP GP YYP D
Sbjct: 121 LNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDD 180
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+S+HPE+F VGEIIREKI E+P+A V
Sbjct: 181 QISDHPEQFVVGEIIREKILHLTSEEIPHAIGV 213
|
An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878) |
| >sp|A6QHB0|ERA_STAAE GTPase Era OS=Staphylococcus aureus (strain Newman) GN=era PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 139/213 (65%), Gaps = 3/213 (1%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
HKSG+V+++G+PNVGKST N++IG K++I+++K QTTR++I G+ + + Q+I DTPG
Sbjct: 4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPG 63
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K H L MMK ++ D I+ +V+A + R DE + E + + K P+ LV
Sbjct: 64 IHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVK--TPVFLV 120
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
LNK DL+ P E+ K+E Y+ + D E++P+SA G V+ D + T LP GP YYP D
Sbjct: 121 LNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDD 180
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+S+HPE+F VGEIIREKI E+P+A V
Sbjct: 181 QISDHPEQFVVGEIIREKILHLTSEEIPHAIGV 213
|
An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. Staphylococcus aureus (strain Newman) (taxid: 426430) |
| >sp|Q5HFJ3|ERA_STAAC GTPase Era OS=Staphylococcus aureus (strain COL) GN=era PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 139/213 (65%), Gaps = 3/213 (1%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
HKSG+V+++G+PNVGKST N++IG K++I+++K QTTR++I G+ + + Q+I DTPG
Sbjct: 4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPG 63
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K H L MMK ++ D I+ +V+A + R DE + E + + K P+ LV
Sbjct: 64 IHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVK--TPVFLV 120
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
LNK DL+ P E+ K+E Y+ + D E++P+SA G V+ D + T LP GP YYP D
Sbjct: 121 LNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDD 180
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+S+HPE+F VGEIIREKI E+P+A V
Sbjct: 181 QISDHPEQFVVGEIIREKILHLTSEEIPHAIGV 213
|
An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. Staphylococcus aureus (strain COL) (taxid: 93062) |
| >sp|A5IT95|ERA_STAA9 GTPase Era OS=Staphylococcus aureus (strain JH9) GN=era PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 139/213 (65%), Gaps = 3/213 (1%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
HKSG+V+++G+PNVGKST N++IG K++I+++K QTTR++I G+ + + Q+I DTPG
Sbjct: 4 HKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFIDTPG 63
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K H L MMK ++ D I+ +V+A + R DE + E + + K P+ LV
Sbjct: 64 IHKPK-HKLGDYMMKVAKNTLSEIDAIMFMVNANEEIGRGDEYIIEMLKNVK--TPVFLV 120
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
LNK DL+ P E+ K+E Y+ + D E++P+SA G V+ D + T LP GP YYP D
Sbjct: 121 LNKIDLVHPDELMPKIEEYQSYMDFTEIVPISALEGLNVDHFIDVLKTYLPEGPKYYPDD 180
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+S+HPE+F VGEIIREKI E+P+A V
Sbjct: 181 QISDHPEQFVVGEIIREKILHLTSEEIPHAIGV 213
|
An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. Staphylococcus aureus (strain JH9) (taxid: 359786) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 348 | ||||||
| 225430700 | 435 | PREDICTED: GTPase Era-like [Vitis vinife | 0.718 | 0.574 | 0.864 | 1e-128 | |
| 255561072 | 443 | GTP-binding protein era, putative [Ricin | 0.916 | 0.720 | 0.705 | 1e-126 | |
| 297735123 | 320 | unnamed protein product [Vitis vinifera] | 0.683 | 0.743 | 0.861 | 1e-121 | |
| 22328152 | 427 | GTP-binding protein Era [Arabidopsis tha | 0.885 | 0.721 | 0.655 | 1e-121 | |
| 449457520 | 433 | PREDICTED: GTPase Era-like [Cucumis sati | 0.729 | 0.586 | 0.795 | 1e-120 | |
| 78499699 | 429 | hypothetical protein [Eutrema halophilum | 0.885 | 0.717 | 0.646 | 1e-119 | |
| 224097032 | 414 | predicted protein [Populus trichocarpa] | 0.698 | 0.586 | 0.820 | 1e-118 | |
| 312190415 | 426 | GTP binding protein [Eutrema parvulum] | 0.853 | 0.697 | 0.657 | 1e-117 | |
| 297794363 | 427 | GTP binding protein [Arabidopsis lyrata | 0.727 | 0.592 | 0.774 | 1e-116 | |
| 356502167 | 421 | PREDICTED: GTPase Era-like [Glycine max] | 0.715 | 0.591 | 0.779 | 1e-115 |
| >gi|225430700|ref|XP_002264259.1| PREDICTED: GTPase Era-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/250 (86%), Positives = 238/250 (95%)
Query: 82 SFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLS 141
+FLSLSEKPDRNMA DDYE+EE D+AS+PNH+SGYVAVLGKPNVGKSTLANQMIGQKLS
Sbjct: 104 TFLSLSEKPDRNMALLDDYELEELDFASNPNHRSGYVAVLGKPNVGKSTLANQMIGQKLS 163
Query: 142 IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVV 201
IVT+KPQTTRHRILGICSGPEYQMILYDTPG+IEKK+H LDSMMMKNVRSA INADC+VV
Sbjct: 164 IVTDKPQTTRHRILGICSGPEYQMILYDTPGVIEKKMHKLDSMMMKNVRSATINADCVVV 223
Query: 202 LVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVI 261
LVDACK P++IDE+LEEGVG+ KDKLP LLVLNKKDLIKPGEIAKKLEWYEKF DVDEVI
Sbjct: 224 LVDACKEPQKIDEVLEEGVGNLKDKLPTLLVLNKKDLIKPGEIAKKLEWYEKFIDVDEVI 283
Query: 262 PVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPY 321
PVSAKYG GV+D++DWIL+KLPLGPAYYPKDIVSEHPERFFVGEI+REKIFMQYRNEVPY
Sbjct: 284 PVSAKYGQGVDDVKDWILSKLPLGPAYYPKDIVSEHPERFFVGEIVREKIFMQYRNEVPY 343
Query: 322 ACQVCNLTFQ 331
ACQV ++++
Sbjct: 344 ACQVNVVSYK 353
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255561072|ref|XP_002521548.1| GTP-binding protein era, putative [Ricinus communis] gi|223539226|gb|EEF40819.1| GTP-binding protein era, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 230/326 (70%), Positives = 271/326 (83%), Gaps = 7/326 (2%)
Query: 8 SSSFGSLFPHYSTLTAYREIKFGFQGRSSSITC--RSNEHQSLVLSEKEVQQQKLWSNQR 65
S S +LF + R +FGFQ ++++ T SN+ Q L +K QQ L S
Sbjct: 41 SCSTTNLFRRRIRTSRRRRSEFGFQVKNNTNTVFFLSNDQQ---LQKK--QQHILVSEGE 95
Query: 66 EMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPN 125
D D+ +E E ++ ++ LSLS KP+RNMA DDYE+EE DYAS PNH+SGYVAV+GKPN
Sbjct: 96 FDDDDEEEEEEEEEETNTLSLSVKPERNMALLDDYELEELDYASDPNHRSGYVAVVGKPN 155
Query: 126 VGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMM 185
VGKSTL+NQMIGQKLSIVT+KPQTTRHRILGICSGP+YQM+LYDTPG+I+K++H LDSMM
Sbjct: 156 VGKSTLSNQMIGQKLSIVTDKPQTTRHRILGICSGPDYQMVLYDTPGVIQKQMHKLDSMM 215
Query: 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245
MKNVR+A INADC++V+VDACK PE+IDE+LEEGVG KDK PILLVLNKKDLIKPGEIA
Sbjct: 216 MKNVRNAAINADCVLVIVDACKVPEKIDEVLEEGVGSLKDKPPILLVLNKKDLIKPGEIA 275
Query: 246 KKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGE 305
KKLEWYEKFTDVDEVIPVSAKYGHGVEDI+DWIL+KLP GPAYYPKDIVSEHPERFFV E
Sbjct: 276 KKLEWYEKFTDVDEVIPVSAKYGHGVEDIKDWILSKLPFGPAYYPKDIVSEHPERFFVAE 335
Query: 306 IIREKIFMQYRNEVPYACQVCNLTFQ 331
I+REKIFMQ+RNEVPYACQV ++++
Sbjct: 336 IVREKIFMQFRNEVPYACQVNVVSYK 361
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297735123|emb|CBI17485.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 205/238 (86%), Positives = 226/238 (94%)
Query: 94 MASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR 153
MA DDYE+EE D+AS+PNH+SGYVAVLGKPNVGKSTLANQMIGQKLSIVT+KPQTTRHR
Sbjct: 1 MALLDDYELEELDFASNPNHRSGYVAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHR 60
Query: 154 ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID 213
ILGICSGPEYQMILYDTPG+IEKK+H LDSMMMKNVRSA INADC+VVLVDACK P++ID
Sbjct: 61 ILGICSGPEYQMILYDTPGVIEKKMHKLDSMMMKNVRSATINADCVVVLVDACKEPQKID 120
Query: 214 EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273
E+LEEGVG+ KDKLP LLVLNKKDLIKPGEIAKKLEWYEKF DVDEVIPVSAKYG GV+D
Sbjct: 121 EVLEEGVGNLKDKLPTLLVLNKKDLIKPGEIAKKLEWYEKFIDVDEVIPVSAKYGQGVDD 180
Query: 274 IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQ 331
++DWIL+KLPLGPAYYPKDIVSEHPERFFVGEI+REKIFMQYRNEVPYACQV ++++
Sbjct: 181 VKDWILSKLPLGPAYYPKDIVSEHPERFFVGEIVREKIFMQYRNEVPYACQVNVVSYK 238
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22328152|ref|NP_201448.2| GTP-binding protein Era [Arabidopsis thaliana] gi|17473914|gb|AAL38371.1| GTP-binding protein-like [Arabidopsis thaliana] gi|20259794|gb|AAM13244.1| GTP-binding protein-like [Arabidopsis thaliana] gi|332010835|gb|AED98218.1| GTP-binding protein Era [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/328 (65%), Positives = 256/328 (78%), Gaps = 20/328 (6%)
Query: 15 FPHYSTLTAYREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQR---EMDL-- 69
F Y + R K Q +S+ + E S +KLW QR EM++
Sbjct: 27 FSPYRIYSRRRVTKSHLQAHNSTTSYGRTELSS---------SKKLWIRQRSFSEMEVEQ 77
Query: 70 ----DDGDEMEFD--DASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGK 123
DD +++E D D +S LSLS KPDRNMA DDYE+EE + + +H+SGYVAV+G
Sbjct: 78 AQLEDDEEQVEIDIVDEASLLSLSMKPDRNMALLDDYEMEELGHTPNTHHRSGYVAVVGM 137
Query: 124 PNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 183
PNVGKSTL+NQMIGQK+SIVT+KPQTTRHRILGICS PEYQMILYDTPG+IEKK+H LD+
Sbjct: 138 PNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVIEKKMHRLDT 197
Query: 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243
MMMKNVR A INADC+V+LVDACK P I+E+L+EG+GD + K P+LLV+NKKDLIKPGE
Sbjct: 198 MMMKNVRDAAINADCVVILVDACKTPTNIEEVLKEGLGDLEKKPPMLLVMNKKDLIKPGE 257
Query: 244 IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFV 303
IAKKLEWYEKFTDVDEVIPVSAKYGHG+ED+++WIL+KLP GP YYPKDIVSEHPERFFV
Sbjct: 258 IAKKLEWYEKFTDVDEVIPVSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEHPERFFV 317
Query: 304 GEIIREKIFMQYRNEVPYACQVCNLTFQ 331
EI+REKIFMQYRNEVPYACQV L+++
Sbjct: 318 SEIVREKIFMQYRNEVPYACQVNVLSYK 345
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457520|ref|XP_004146496.1| PREDICTED: GTPase Era-like [Cucumis sativus] gi|449529894|ref|XP_004171933.1| PREDICTED: GTPase Era-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/254 (79%), Positives = 231/254 (90%)
Query: 78 DDASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIG 137
DD SFLSL+EKPDRN+ DDYE+EE Y NH+SGY A++GKPNVGKSTL NQ+IG
Sbjct: 98 DDELSFLSLNEKPDRNLTLLDDYEMEELGYPCDLNHRSGYAALVGKPNVGKSTLVNQLIG 157
Query: 138 QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197
QKLSIVT+KPQTTRHRILGICSGPEYQ+ILYDTPG+IEKK+H LD+MMMKNVRSA +NAD
Sbjct: 158 QKLSIVTDKPQTTRHRILGICSGPEYQVILYDTPGVIEKKMHKLDTMMMKNVRSAAVNAD 217
Query: 198 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257
C++V+VDACKAP++IDEILE GVGD K+ P LLVLNKKDLIKPGEIAKKLEWYEKFT+V
Sbjct: 218 CVLVVVDACKAPQKIDEILEGGVGDLKEMPPTLLVLNKKDLIKPGEIAKKLEWYEKFTNV 277
Query: 258 DEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRN 317
DEVIPVSAKYGHG+ED+R+WIL+KLPLGPAYYPKDIVSEHPERFFV EI+REKIFMQYRN
Sbjct: 278 DEVIPVSAKYGHGIEDVREWILSKLPLGPAYYPKDIVSEHPERFFVSEIVREKIFMQYRN 337
Query: 318 EVPYACQVCNLTFQ 331
EVPYACQV ++++
Sbjct: 338 EVPYACQVNVVSYK 351
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|78499699|gb|ABB45853.1| hypothetical protein [Eutrema halophilum] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/331 (64%), Positives = 252/331 (76%), Gaps = 23/331 (6%)
Query: 16 PHYSTLTAY----REIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDD 71
P++ST Y R K Q SS+ S +E +KLW QR +
Sbjct: 25 PNFSTYHIYSRRSRVTKSHLQAHSST--------SSYGRTELAASAKKLWIRQRSFSETE 76
Query: 72 -----------GDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAV 120
++++ D +S LSLS KPDRNMA DDYE+EE + NH+SGYVAV
Sbjct: 77 VEQGQFEDEEEQEDIDISDEASLLSLSMKPDRNMALLDDYEMEELGHTPDTNHRSGYVAV 136
Query: 121 LGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180
LG PNVGKSTL+NQMIGQK+SIVT+KPQTTRHRILGICS PEYQMILYDTPG+IEKK+H
Sbjct: 137 LGMPNVGKSTLSNQMIGQKISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVIEKKMHR 196
Query: 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240
LD+MMMKNVR A INADC+VVLVDACK P I+E+L+EG+G+ + + P+LLV+NKKDLIK
Sbjct: 197 LDTMMMKNVRDAAINADCVVVLVDACKMPANIEEVLKEGLGNLEKRPPMLLVMNKKDLIK 256
Query: 241 PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPER 300
PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED+++WIL+KLP GP YYPKDIVSEHPER
Sbjct: 257 PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDVKEWILSKLPFGPPYYPKDIVSEHPER 316
Query: 301 FFVGEIIREKIFMQYRNEVPYACQVCNLTFQ 331
FFV EI+REKIFMQYRNEVPYACQV L+++
Sbjct: 317 FFVAEIVREKIFMQYRNEVPYACQVNVLSYK 347
|
Source: Eutrema halophilum Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224097032|ref|XP_002310817.1| predicted protein [Populus trichocarpa] gi|222853720|gb|EEE91267.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/245 (82%), Positives = 226/245 (92%), Gaps = 2/245 (0%)
Query: 83 FLSLSEKPDRNMASPDDYEIEEFDY--ASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKL 140
LSLS KPDRN A DDYEIEE + +S+ NH+SGYVAV+GKPNVGKSTL+NQMIGQKL
Sbjct: 82 LLSLSVKPDRNTALLDDYEIEELAFHDSSNSNHRSGYVAVVGKPNVGKSTLSNQMIGQKL 141
Query: 141 SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIV 200
SIVT+KPQTTRHRILGICS P+YQMILYDTPG+IEKK+H LDSMMMKNVRSA INADC++
Sbjct: 142 SIVTDKPQTTRHRILGICSAPDYQMILYDTPGVIEKKMHKLDSMMMKNVRSAAINADCVL 201
Query: 201 VLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEV 260
V+VDAC+APE+IDE+LEEGVG+ KD +P LLVLNKKDLIKPGEIAKKLEWYEKFT VDEV
Sbjct: 202 VIVDACRAPEKIDEMLEEGVGNLKDNVPTLLVLNKKDLIKPGEIAKKLEWYEKFTGVDEV 261
Query: 261 IPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP 320
IPVSAK+G GVEDI++WIL+KLP+GPAYYPKDIVSEHPERFFV EI+REKIFMQ+RNEVP
Sbjct: 262 IPVSAKFGQGVEDIKEWILSKLPMGPAYYPKDIVSEHPERFFVAEIVREKIFMQFRNEVP 321
Query: 321 YACQV 325
YACQV
Sbjct: 322 YACQV 326
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312190415|gb|ADQ43214.1| GTP binding protein [Eutrema parvulum] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/318 (65%), Positives = 253/318 (79%), Gaps = 21/318 (6%)
Query: 25 REIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQR---EMDLDDG--------D 73
R K Q ++S+I+ E S +KLW QR EM+++ G +
Sbjct: 37 RLTKSHLQAQNSTISYGRTELAS---------SKKLWIRQRSFSEMEVEQGRLEDEEEQE 87
Query: 74 EMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLAN 133
+++ D +S LSLS KPDRNMA DDYE+EE + NH+S YVAV+G PNVGKSTL+N
Sbjct: 88 DIDIGDEASLLSLSMKPDRNMALLDDYEMEELGHTPDTNHRS-YVAVVGMPNVGKSTLSN 146
Query: 134 QMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193
QMIGQK+SIVT+KPQTTRHRILGICS PEYQMIL+DTPG+IEKK+H LD+MMMKNVR A
Sbjct: 147 QMIGQKISIVTDKPQTTRHRILGICSSPEYQMILFDTPGVIEKKMHRLDTMMMKNVRDAA 206
Query: 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253
INADC+V+LVDACK P +I+E+L+EG+GD + + P+LLV+NKKDLIKPGEIAKKLEWYEK
Sbjct: 207 INADCVVILVDACKTPAKIEEVLKEGLGDLEKRPPMLLVMNKKDLIKPGEIAKKLEWYEK 266
Query: 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFM 313
FTDVDEVIPVSAKYGHG+ED+++WIL+KLP GP YYPKDIVSEHPERFFV EI+REKIFM
Sbjct: 267 FTDVDEVIPVSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEHPERFFVAEIVREKIFM 326
Query: 314 QYRNEVPYACQVCNLTFQ 331
QYRNEVPYACQV L+++
Sbjct: 327 QYRNEVPYACQVNVLSYK 344
|
Source: Eutrema parvulum Species: Eutrema parvulum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297794363|ref|XP_002865066.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297310901|gb|EFH41325.1| GTP binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/253 (77%), Positives = 226/253 (89%)
Query: 79 DASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138
D +S LSLS KPDRNMA DDYE+EE + +H+SGYVAVLG PNVGKSTL+NQMIGQ
Sbjct: 93 DEASLLSLSMKPDRNMALLDDYEMEELGHTPDTHHRSGYVAVLGMPNVGKSTLSNQMIGQ 152
Query: 139 KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198
K+SIVT+KPQTTRHRILGICS PEYQMILYDTPG+IEKK+H LD+MMMKNVR A INADC
Sbjct: 153 KISIVTDKPQTTRHRILGICSSPEYQMILYDTPGVIEKKMHRLDTMMMKNVRDAAINADC 212
Query: 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVD 258
+V+LVDACK P I+E+L+EG+G+ + K P+LLV+NKKDLIKPGEIAKKLEWYEKFTDVD
Sbjct: 213 VVILVDACKTPTYIEEVLKEGLGNLEKKPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVD 272
Query: 259 EVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNE 318
EVIPVSAKYGHG+ED+++WIL+KLP GP YYPKDIVSEHPERFFV EI+REKIFMQYRNE
Sbjct: 273 EVIPVSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNE 332
Query: 319 VPYACQVCNLTFQ 331
VPYACQV L+++
Sbjct: 333 VPYACQVNVLSYK 345
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502167|ref|XP_003519892.1| PREDICTED: GTPase Era-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/249 (77%), Positives = 224/249 (89%)
Query: 83 FLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI 142
FLSLS+KPDRNMA DDYE EE D+ P+H+SGYV +LGKPNVGKSTLANQM+GQKLSI
Sbjct: 91 FLSLSDKPDRNMALLDDYEGEELDFEFGPDHRSGYVTLLGKPNVGKSTLANQMLGQKLSI 150
Query: 143 VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVL 202
VT+KPQTTRHRIL ICSG +YQMILYD PG+++K++H LDSMMMKNVRSA +NADC++VL
Sbjct: 151 VTDKPQTTRHRILCICSGEDYQMILYDKPGVLQKEMHKLDSMMMKNVRSAAVNADCVLVL 210
Query: 203 VDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIP 262
VDA KAPE+ID +LEEG+GD KDK P LL+LNKKDL+KPGE+AKKLEWYEK TDVDEVIP
Sbjct: 211 VDARKAPEKIDGLLEEGIGDLKDKPPTLLILNKKDLVKPGELAKKLEWYEKLTDVDEVIP 270
Query: 263 VSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYA 322
VSAKYG GVED++DWIL+KLP GPAYYPKDIVSEHPERFFV EI+REKIFMQYRNE+PYA
Sbjct: 271 VSAKYGQGVEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYA 330
Query: 323 CQVCNLTFQ 331
CQV + ++
Sbjct: 331 CQVNVVNYK 339
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 348 | ||||||
| TAIR|locus:2154915 | 427 | AT5G66470 [Arabidopsis thalian | 0.721 | 0.587 | 0.776 | 6.3e-108 | |
| TIGR_CMR|BA_4524 | 301 | BA_4524 "GTP-binding protein E | 0.603 | 0.697 | 0.399 | 5.3e-40 | |
| UNIPROTKB|Q74AX3 | 299 | era "GTPase Era" [Geobacter su | 0.597 | 0.695 | 0.422 | 1.4e-39 | |
| TIGR_CMR|GSU_2226 | 299 | GSU_2226 "GTP-binding protein | 0.597 | 0.695 | 0.422 | 1.4e-39 | |
| UNIPROTKB|P37214 | 299 | era "GTPase Era" [Streptococcu | 0.600 | 0.698 | 0.367 | 1e-36 | |
| TIGR_CMR|CPS_4121 | 305 | CPS_4121 "GTP-binding protein | 0.606 | 0.691 | 0.376 | 9.5e-34 | |
| TIGR_CMR|SPO_0691 | 301 | SPO_0691 "GTP-binding protein | 0.603 | 0.697 | 0.361 | 9.5e-34 | |
| TIGR_CMR|CHY_0430 | 298 | CHY_0430 "GTP-binding protein | 0.606 | 0.708 | 0.364 | 8.5e-33 | |
| UNIPROTKB|Q9KPB3 | 325 | era "GTPase Era" [Vibrio chole | 0.612 | 0.655 | 0.355 | 4.2e-31 | |
| TIGR_CMR|VC_2460 | 325 | VC_2460 "GTP-binding protein E | 0.612 | 0.655 | 0.355 | 4.2e-31 |
| TAIR|locus:2154915 AT5G66470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
Identities = 195/251 (77%), Positives = 226/251 (90%)
Query: 81 SSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKL 140
+S LSLS KPDRNMA DDYE+EE + + +H+SGYVAV+G PNVGKSTL+NQMIGQK+
Sbjct: 95 ASLLSLSMKPDRNMALLDDYEMEELGHTPNTHHRSGYVAVVGMPNVGKSTLSNQMIGQKI 154
Query: 141 SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIV 200
SIVT+KPQTTRHRILGICS PEYQMILYDTPG+IEKK+H LD+MMMKNVR A INADC+V
Sbjct: 155 SIVTDKPQTTRHRILGICSSPEYQMILYDTPGVIEKKMHRLDTMMMKNVRDAAINADCVV 214
Query: 201 VLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEV 260
+LVDACK P I+E+L+EG+GD + K P+LLV+NKKDLIKPGEIAKKLEWYEKFTDVDEV
Sbjct: 215 ILVDACKTPTNIEEVLKEGLGDLEKKPPMLLVMNKKDLIKPGEIAKKLEWYEKFTDVDEV 274
Query: 261 IPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP 320
IPVSAKYGHG+ED+++WIL+KLP GP YYPKDIVSEHPERFFV EI+REKIFMQYRNEVP
Sbjct: 275 IPVSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEHPERFFVSEIVREKIFMQYRNEVP 334
Query: 321 YACQVCNLTFQ 331
YACQV L+++
Sbjct: 335 YACQVNVLSYK 345
|
|
| TIGR_CMR|BA_4524 BA_4524 "GTP-binding protein Era" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 85/213 (39%), Positives = 138/213 (64%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
+KSG+V+++G+PNVGKST N++IGQK++I+++KPQTTR++I G+ + + Q+I DTPG
Sbjct: 6 YKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPG 65
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K H L M+K ++ D ++ +V+A + R +E + E + + K P+ LV
Sbjct: 66 IHKPK-HKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQ--PVFLV 122
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
+NK D + P ++ + ++ Y K D E++P+SA G+ E + I LP GP YYP +
Sbjct: 123 INKIDQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNAEALIGTIKKYLPEGPQYYPDN 182
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
V++HPERF + E+IREK+ R EVP++ V
Sbjct: 183 QVTDHPERFIIAELIREKVLHLTREEVPHSVAV 215
|
|
| UNIPROTKB|Q74AX3 era "GTPase Era" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 90/213 (42%), Positives = 142/213 (66%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173
+SG+V+++G+PNVGKSTL N+++G+K+ I ++KPQTTR+RI GI + P Q++ DTPGI
Sbjct: 8 RSGFVSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNLPGAQIVFIDTPGI 67
Query: 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLV 232
+ L+ M++ S+ D +++LV+A +AP ++ EI G+ + +P+ LV
Sbjct: 68 HHARSR-LNKFMVEEALSSIREVDLVMLLVEANRAPGDQEREIA--GLLPSVN-VPVFLV 123
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
+NK DLI P +A++L Y + EV+PVSA+ G VE + + + LP GP Y+P D
Sbjct: 124 VNKIDLIDPDILAERLTAYAELFPFREVVPVSAETGENVERLVEVVRDTLPEGPVYFPDD 183
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
I+++ PERF V EI+REK+F R+E+PY+ V
Sbjct: 184 ILTDLPERFIVAEIVREKVFRLTRDEIPYSTAV 216
|
|
| TIGR_CMR|GSU_2226 GSU_2226 "GTP-binding protein Era" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 90/213 (42%), Positives = 142/213 (66%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173
+SG+V+++G+PNVGKSTL N+++G+K+ I ++KPQTTR+RI GI + P Q++ DTPGI
Sbjct: 8 RSGFVSIIGRPNVGKSTLLNRILGEKIVITSDKPQTTRNRIQGIHNLPGAQIVFIDTPGI 67
Query: 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLV 232
+ L+ M++ S+ D +++LV+A +AP ++ EI G+ + +P+ LV
Sbjct: 68 HHARSR-LNKFMVEEALSSIREVDLVMLLVEANRAPGDQEREIA--GLLPSVN-VPVFLV 123
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
+NK DLI P +A++L Y + EV+PVSA+ G VE + + + LP GP Y+P D
Sbjct: 124 VNKIDLIDPDILAERLTAYAELFPFREVVPVSAETGENVERLVEVVRDTLPEGPVYFPDD 183
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
I+++ PERF V EI+REK+F R+E+PY+ V
Sbjct: 184 ILTDLPERFIVAEIVREKVFRLTRDEIPYSTAV 216
|
|
| UNIPROTKB|P37214 era "GTPase Era" [Streptococcus mutans UA159 (taxid:210007)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 78/212 (36%), Positives = 137/212 (64%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173
KSG+VA+LG+PNVGKST N ++GQK++I+++K QTTR++I+GI + + Q++ DTPGI
Sbjct: 4 KSGFVAILGRPNVGKSTFLNHVMGQKIAIMSDKAQTTRNKIMGIYTTDKEQIVFIDTPGI 63
Query: 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 233
+ K + D M+++ S D ++ +V A + + D ++ E + K+P++LV+
Sbjct: 64 HKPKTALGD-FMVESAYSTLREVDTVLFMVPADEKRGKGDNMIIERL--KAAKVPVILVI 120
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293
NK D + P ++ ++++ + D E++P+SA G+ V + D ++ L G Y+P D
Sbjct: 121 NKIDKVHPNQLLEQIDDFRNQMDFQEIVPISALQGNNVSHLVDLLVDHLEEGFQYFPADQ 180
Query: 294 VSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+++HPERF V E+IREK+ + R E+P++ V
Sbjct: 181 ITDHPERFLVSEMIREKVLLLTREEIPHSVAV 212
|
|
| TIGR_CMR|CPS_4121 CPS_4121 "GTP-binding protein Era" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 81/215 (37%), Positives = 126/215 (58%)
Query: 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP 171
N +G +A++G+PNVGKSTL N ++GQK+SI + KPQTTRHRILGI + Q +L DTP
Sbjct: 7 NTYAGLIAIVGRPNVGKSTLLNALLGQKISITSKKPQTTRHRILGILTEENRQAVLVDTP 66
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL 231
G+ ++ ++ +M + S+ + I+ LV+ + DE++ V + P +L
Sbjct: 67 GLHTEEKRAINRLMNRAASSSIAEVELIMFLVEGTHWTKD-DELVLSKV--KQSGTPCIL 123
Query: 232 VLNKKDLIKP-GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290
V+NK D I E+ L+ D +++P+ A GHGV+ IR LT LP G ++P
Sbjct: 124 VVNKTDNIPDKDELLPHLQKLGAMHDFRDIVPICATKGHGVDTIRQLCLTSLPEGVFWFP 183
Query: 291 KDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+D +++ RF EIIREK+ +E+PY+ V
Sbjct: 184 EDHITDRSSRFMASEIIREKLIRFTGDELPYSITV 218
|
|
| TIGR_CMR|SPO_0691 SPO_0691 "GTP-binding protein Era" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 77/213 (36%), Positives = 124/213 (58%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173
++G+VA++G+PN GKSTL N+M+G K+SIVT+K QTTR RI G+ E Q++ DTPG+
Sbjct: 4 RAGFVALIGEPNAGKSTLLNRMVGAKVSIVTHKVQTTRTRIRGVAMEGEAQIVFVDTPGL 63
Query: 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLV 232
+ + LD M+ +AD +V++++A + E ++ ILE G+ + + L
Sbjct: 64 FQPR-RRLDRAMVAAAWGGAADADIVVLMIEAHRGITEGVERILE-GLAEIAKGRTVALA 121
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
+NK D + ++ E + +SA+ GHGVED+R W+ +LP P YP+D
Sbjct: 122 INKIDRVPAEKLLGLSEALNARFEFARTFMISAERGHGVEDLRKWLAAELPESPWLYPED 181
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
+++ P R EI REK+ ++ E+PY V
Sbjct: 182 QIADLPMRMIAAEITREKLTLRLHQELPYQLTV 214
|
|
| TIGR_CMR|CHY_0430 CHY_0430 "GTP-binding protein Era" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 78/214 (36%), Positives = 130/214 (60%)
Query: 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP 171
++KSG+V+++G+PNVGKSTL NQ++G K++I+++KPQTTR++I + + + Q+I DTP
Sbjct: 2 SYKSGFVSIVGRPNVGKSTLLNQVVGTKIAIMSDKPQTTRNKIRAVLTSEKGQIIFIDTP 61
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL 231
G+ +K + L M+K ++ D ++ +V+A + L + + + K PI+L
Sbjct: 62 GV-QKPRNKLGEFMLKQALTSLDEVDVLLYVVEANSPIGPQENYLLKTLAEVKT--PIIL 118
Query: 232 VLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK 291
V+NK D++K E E V + +SA G GV ++ + I LP GP YYP+
Sbjct: 119 VVNKIDVVKMIEAQTLARQIESRLKVAKTYYISALNGTGVSELVEGIFELLPEGPPYYPE 178
Query: 292 DIVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
V+++PERF + E IRE+I R E+P++ V
Sbjct: 179 GQVTDYPERFIIAEYIREQILHLTREEIPHSVAV 212
|
|
| UNIPROTKB|Q9KPB3 era "GTPase Era" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 79/222 (35%), Positives = 131/222 (59%)
Query: 108 ASHP-NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMI 166
AS P N G+VA++G+PNVGKSTL N ++GQK+SI + KPQTTRHRI+G+ + YQ I
Sbjct: 23 ASTPENQHCGFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAI 82
Query: 167 LYDTPGI-IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKD 225
DTPG+ IE+K ++ +M + S+ + + ++ +V+ DE++ + K
Sbjct: 83 YVDTPGLHIEEK-RAINRLMNRAASSSLSDVNLVLFVVEGTHWTAD-DEMVFTKL--QKA 138
Query: 226 KLPILLVLNKKDLIKP-GEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
P++L +NK D +K E+ LE ++ VD ++P+SAK G + ++ + LP
Sbjct: 139 NFPVVLCVNKVDQVKDRNEVMLHMLELSKRMQFVD-IVPISAKQGKNTDVLKKHVRDHLP 197
Query: 284 LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
++P++ V++ +RF EI+REK+ E+PY+ V
Sbjct: 198 KAVHHFPEEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTV 239
|
|
| TIGR_CMR|VC_2460 VC_2460 "GTP-binding protein Era" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 79/222 (35%), Positives = 131/222 (59%)
Query: 108 ASHP-NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMI 166
AS P N G+VA++G+PNVGKSTL N ++GQK+SI + KPQTTRHRI+G+ + YQ I
Sbjct: 23 ASTPENQHCGFVAIVGRPNVGKSTLLNNLLGQKISITSRKPQTTRHRIMGVETDGNYQAI 82
Query: 167 LYDTPGI-IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKD 225
DTPG+ IE+K ++ +M + S+ + + ++ +V+ DE++ + K
Sbjct: 83 YVDTPGLHIEEK-RAINRLMNRAASSSLSDVNLVLFVVEGTHWTAD-DEMVFTKL--QKA 138
Query: 226 KLPILLVLNKKDLIKP-GEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
P++L +NK D +K E+ LE ++ VD ++P+SAK G + ++ + LP
Sbjct: 139 NFPVVLCVNKVDQVKDRNEVMLHMLELSKRMQFVD-IVPISAKQGKNTDVLKKHVRDHLP 197
Query: 284 LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
++P++ V++ +RF EI+REK+ E+PY+ V
Sbjct: 198 KAVHHFPEEYVTDRSQRFMASEIVREKLMRFTGEELPYSVTV 239
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 348 | |||
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 5e-92 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 6e-72 | |
| cd04163 | 168 | cd04163, Era, E | 3e-68 | |
| TIGR00436 | 270 | TIGR00436, era, GTP-binding protein Era | 9e-52 | |
| PRK15494 | 339 | PRK15494, era, GTPase Era; Provisional | 2e-32 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 3e-32 | |
| cd00880 | 161 | cd00880, Era_like, E | 4e-31 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 3e-28 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 1e-27 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 2e-27 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 6e-25 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 9e-25 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 9e-23 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 1e-21 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 4e-21 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 6e-21 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 7e-20 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 3e-19 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 6e-19 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 1e-18 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 4e-18 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 8e-17 | |
| PRK03003 | 472 | PRK03003, PRK03003, GTP-binding protein Der; Revie | 6e-16 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 1e-15 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 1e-15 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 5e-14 | |
| pfam02421 | 190 | pfam02421, FeoB_N, Ferrous iron transport protein | 8e-14 | |
| cd01879 | 159 | cd01879, FeoB, Ferrous iron transport protein B (F | 4e-13 | |
| TIGR00450 | 442 | TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas | 5e-13 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 6e-13 | |
| COG2262 | 411 | COG2262, HflX, GTPases [General function predictio | 1e-12 | |
| TIGR02729 | 329 | TIGR02729, Obg_CgtA, Obg family GTPase CgtA | 2e-12 | |
| COG0218 | 200 | COG0218, COG0218, Predicted GTPase [General functi | 4e-12 | |
| COG0536 | 369 | COG0536, Obg, Predicted GTPase [General function p | 9e-12 | |
| PRK00454 | 196 | PRK00454, engB, GTP-binding protein YsxC; Reviewed | 1e-11 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 5e-11 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 4e-10 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 4e-10 | |
| TIGR03598 | 178 | TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi | 5e-10 | |
| PRK12297 | 424 | PRK12297, obgE, GTPase CgtA; Reviewed | 6e-10 | |
| TIGR03156 | 351 | TIGR03156, GTP_HflX, GTP-binding protein HflX | 1e-09 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 1e-09 | |
| TIGR00437 | 591 | TIGR00437, feoB, ferrous iron transporter FeoB | 2e-09 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 4e-09 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 4e-09 | |
| COG1163 | 365 | COG1163, DRG, Predicted GTPase [General function p | 4e-09 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 6e-09 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 7e-09 | |
| COG1084 | 346 | COG1084, COG1084, Predicted GTPase [General functi | 1e-08 | |
| PRK12299 | 335 | PRK12299, obgE, GTPase CgtA; Reviewed | 2e-08 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 2e-08 | |
| PRK12298 | 390 | PRK12298, obgE, GTPase CgtA; Reviewed | 4e-08 | |
| cd01897 | 167 | cd01897, NOG, Nucleolar GTP-binding protein (NOG) | 4e-08 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 5e-08 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 8e-08 | |
| PRK04213 | 201 | PRK04213, PRK04213, GTP-binding protein; Provision | 1e-07 | |
| cd01896 | 233 | cd01896, DRG, Developmentally Regulated GTP-bindin | 4e-07 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 5e-07 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 1e-06 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 1e-06 | |
| PRK03003 | 472 | PRK03003, PRK03003, GTP-binding protein Der; Revie | 3e-06 | |
| cd01881 | 167 | cd01881, Obg_like, Obg-like family of GTPases cons | 3e-06 | |
| cd01890 | 179 | cd01890, LepA, LepA also known as Elongation Facto | 1e-05 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 2e-05 | |
| PRK13796 | 365 | PRK13796, PRK13796, GTPase YqeH; Provisional | 2e-05 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 6e-05 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 8e-05 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 9e-05 | |
| cd04137 | 180 | cd04137, RheB, Ras Homolog Enriched in Brain (RheB | 1e-04 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 1e-04 | |
| cd04142 | 198 | cd04142, RRP22, Ras-related protein on chromosome | 1e-04 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 2e-04 | |
| TIGR03597 | 360 | TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase | 2e-04 | |
| pfam03029 | 235 | pfam03029, ATP_bind_1, Conserved hypothetical ATP | 5e-04 | |
| COG3596 | 296 | COG3596, COG3596, Predicted GTPase [General functi | 5e-04 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 6e-04 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 0.002 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 0.002 | |
| cd01857 | 140 | cd01857, HSR1_MMR1, A circularly permuted subfamil | 0.002 | |
| PRK05433 | 600 | PRK05433, PRK05433, GTP-binding protein LepA; Prov | 0.003 | |
| cd00876 | 160 | cd00876, Ras, Rat sarcoma (Ras) family of small gu | 0.003 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 0.004 | |
| cd01853 | 248 | cd01853, Toc34_like, Translocon at the Outer-envel | 0.004 | |
| cd01889 | 192 | cd01889, SelB_euk, SelB, the dedicated elongation | 0.004 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 276 bits (709), Expect = 5e-92
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 4/216 (1%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDT 170
KSG+VA++G+PNVGKSTL N ++GQK+SIV+ KPQTTRHRI GI + + Q+I DT
Sbjct: 1 MGFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDT 60
Query: 171 PGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL 230
PGI + K L+ M K S+ + D ++ +VDA + DE + E + K K P++
Sbjct: 61 PGIHKPK-RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLK--KVKTPVI 117
Query: 231 LVLNKKDLIKP-GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289
LVLNK DL+K E+ LE + D E++P+SA G V+++ D I LP GP YY
Sbjct: 118 LVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYY 177
Query: 290 PKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
P+D +++ PERF EIIREK+ +E+PY+ V
Sbjct: 178 PEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAV 213
|
Length = 292 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 6e-72
Identities = 94/213 (44%), Positives = 136/213 (63%), Gaps = 4/213 (1%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDT 170
KSG+VA++G+PNVGKSTL N ++GQK+SIV+ KPQTTR+RI GI + Q+I DT
Sbjct: 2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDT 61
Query: 171 PGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL 230
PGI + K H L +M K RSA + D I+ +VDA + DE + E + K K P++
Sbjct: 62 PGIHKPK-HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQL--KKTKTPVI 118
Query: 231 LVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289
LV+NK D +KP + K + + +K E++P+SA G V+ + + I LP GP YY
Sbjct: 119 LVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYY 178
Query: 290 PKDIVSEHPERFFVGEIIREKIFMQYRNEVPYA 322
P+D +++ PERF EIIREK+ + R E+P++
Sbjct: 179 PEDQITDRPERFLAAEIIREKLLLLLREELPHS 211
|
Length = 298 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 3e-68
Identities = 73/171 (42%), Positives = 107/171 (62%), Gaps = 4/171 (2%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
KSG+VA++G+PNVGKSTL N ++GQK+SIV+ KPQTTR+RI GI + + Q+I DTPG
Sbjct: 1 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPG 60
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + K L M+K SA + D ++ +VDA + DE + E + K K P++LV
Sbjct: 61 IHKPK-KKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFILELL--KKSKTPVILV 117
Query: 233 LNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
LNK DL+K E L E ++ E+ P+SA G V+++ ++I+ L
Sbjct: 118 LNKIDLVKDKEDLLPLLEKLKELHPFAEIFPISALKGENVDELLEYIVEYL 168
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 9e-52
Identities = 92/235 (39%), Positives = 131/235 (55%), Gaps = 19/235 (8%)
Query: 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175
G+VA+LG+PNVGKSTL NQ+ GQK+SI + K QTTR+RI GI + Q+I DTPG E
Sbjct: 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHE 60
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLV 232
KK H L+ +MMK RSA D I+ +VD+ + E + L+ K P++L
Sbjct: 61 KK-HSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNL------KRPVVLT 113
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292
NK D ++ ++ Y D +++P+SA G + +I LP GP YP+D
Sbjct: 114 RNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPED 173
Query: 293 IVSEHPERFFVGEIIREKIFMQYRNEVPYACQVC---------NLTFQHWLIFVE 338
V++ P+RF + EIIREKI + E+P++ +V L H LI VE
Sbjct: 174 YVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVE 228
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270 |
| >gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-32
Identities = 84/250 (33%), Positives = 138/250 (55%), Gaps = 5/250 (2%)
Query: 76 EFDDASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQM 135
EF + L+ + + D + S +E + N K+ V ++G+PN GKSTL N++
Sbjct: 14 EFKGDTEALAAAVREDASTGSTSKLPLE-VKFGKMSNQKTVSVCIIGRPNSGKSTLLNRI 72
Query: 136 IGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195
IG+KLSIVT K QTTR I GI + + Q+ILYDTPGI E K L+ M++ S+ +
Sbjct: 73 IGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK-GSLEKAMVRCAWSSLHS 131
Query: 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255
AD +++++D+ K+ + I + + + + +PI L LNK D+ K E
Sbjct: 132 ADLVLLIIDSLKSFDDITHNILDKL-RSLNIVPIFL-LNKIDIESKYLNDIKAFLTENHP 189
Query: 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQY 315
D + P+SA G ++ + ++I +K + P Y +D +++ P RF EI RE++F+
Sbjct: 190 D-SLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNL 248
Query: 316 RNEVPYACQV 325
+ E+PY V
Sbjct: 249 QKELPYKLTV 258
|
Length = 339 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-32
Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA++G+PNVGKSTL N + G K++IV++ P TTR ILG+ G Q+IL DTPG+IE
Sbjct: 2 VALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVL-GLGRQIILVDTPGLIEGA 60
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235
A AD I+++VDA + DE + E + K PI+LVLNK
Sbjct: 61 SEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLPKK-PIILVLNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 4e-31
Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 7/166 (4%)
Query: 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG-ICSGPEYQMILYDTPGIIEKK 177
A+ G+PNVGKS+L N ++GQ + IV+ P TTR + P ++L DTPG+ E+
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEG 60
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
L ++ R AD ++++VD+ P + L + P+LLVLNK D
Sbjct: 61 G--LGRERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGL---LRERGKPVLLVLNKID 115
Query: 238 LIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L+ E + L E + VI VSA G G++++R I L
Sbjct: 116 LVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIAELL 161
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-28
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEK 176
V+G+ VGKS+L N ++G ++ V++ P TTR + + + +++L DTPG+ E
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
+ R AD I+++VD+ D L K+ +PI+LV NK
Sbjct: 61 G----GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIILVGNKI 116
Query: 237 DLIKPGEIAKK--LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280
DL++ E+ + LE K V V VSAK G GV+++ + ++
Sbjct: 117 DLLEEREVEELLRLEELAKILGV-PVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 62/170 (36%), Positives = 88/170 (51%), Gaps = 15/170 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA++G+PNVGKSTL N++ G++ +IV++ P TR R G + IL DT GI E
Sbjct: 2 VAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD 61
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVL 233
LD + + A AD I+ +VD + E I + L K P++LV
Sbjct: 62 DG-LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWL------RKSGKPVILVA 114
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
NK D K +A E+Y E IP+SA++G G+ D+ D IL LP
Sbjct: 115 NKIDGKKEDAVA--AEFYS--LGFGEPIPISAEHGRGIGDLLDAILELLP 160
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-27
Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 15/168 (8%)
Query: 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178
A++G+PNVGKSTL N++ G++ +IV++ P TR R G + IL DT G IE
Sbjct: 1 AIVGRPNVGKSTLFNRLTGRRDAIVSDTPGVTRDRKYGEAEWGGREFILIDTGG-IEPDD 59
Query: 179 HMLDSMMMKNVRSAGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPILLVLN 234
+ + + A AD I+ +VD A E I + L K K P++LV+N
Sbjct: 60 EGISKEIREQAEIAIEEADVILFVVDGREGLTPADEEIAKYL------RKSKKPVILVVN 113
Query: 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
K D IK E A E+Y E IP+SA++G G+ D+ D IL L
Sbjct: 114 KIDNIKEEEEA--AEFYS--LGFGEPIPISAEHGRGIGDLLDAILELL 157
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-25
Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 14/171 (8%)
Query: 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
VA++G+PNVGKSTL N++ G++++IV++ P TR RI G + IL DT G+ +
Sbjct: 5 VVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDG 64
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPILLV 232
L ++ + A AD I+ +VD A E I +IL K P++LV
Sbjct: 65 DEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRS------KKPVILV 118
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
+NK D +K E+A E+Y E +P+SA++G G+ D+ D +L LP
Sbjct: 119 VNKIDNLKAEELAY--EFYSLG--FGEPVPISAEHGRGIGDLLDAVLELLP 165
|
Length = 444 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 9e-25
Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 21/173 (12%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175
VA++G+PNVGKSTL N++ G++ +IV + P TR RI G G E+ +I DT GI
Sbjct: 4 VAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILI--DTGGIEP 61
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-----ERIDEILEEGVGDHKDKLPIL 230
+ + + A AD I+ +VD +A E I +IL K P++
Sbjct: 62 DD-DGFEKQIREQAELAIEEADVILFVVDG-RAGLTPADEEIAKIL------RKSNKPVI 113
Query: 231 LVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
LV+NK D A E+Y + E P+SA++G G+ D+ D IL +LP
Sbjct: 114 LVVNKVDGPDEEADA--YEFYS--LGLGEPYPISAEHGRGIGDLLDAILEELP 162
|
Length = 435 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 9e-23
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 50/184 (27%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-----HRILGICSGPEYQMILYDTPG 172
V + GKPNVGKS+L N + G+ +IV++ TTR LG G + L DT G
Sbjct: 6 VVIAGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEEEIDLG---G--IPVRLIDTAG 60
Query: 173 I------IEKKIHMLDSMMMKNVRSAGI--------NADCIVVLVDACKAPERIDEILEE 218
+ IEK GI AD ++++VDA + + D + E
Sbjct: 61 LRETEDEIEK---------------IGIERAREAIEEADLVLLVVDASEGLDEEDLEILE 105
Query: 219 GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
K P+++VLNK DL+ + +I +SAK G G++++++ +
Sbjct: 106 ----LPAKKPVIVVLNKSDLLSD-------AEGISELNGKPIIAISAKTGEGIDELKEAL 154
Query: 279 LTKL 282
L
Sbjct: 155 LELA 158
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-21
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175
+ ++G PNVGKSTL N+++G K+SI KP TTR+ + + G Y+ L DT G +
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQED 63
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKD-KLPILLVLN 234
+ S + D +++++D + E+ + + H + +PI+LV N
Sbjct: 64 YD-AIRRLYYRAVESSLRV-FDIVILVLDVEEILEKQTKEII----HHAESGVPIILVGN 117
Query: 235 KKDLI----KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280
K DL K + + +IP+SA+ G ++ +
Sbjct: 118 KIDLRDAKLKTHVAFLFAKLNGE-----PIIPLSAETGKNIDSAFKIVEA 162
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 4e-21
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 28/179 (15%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175
+A++G+PNVGKSTL N ++G++ IV++ TTR I G +Y +I DT G I
Sbjct: 175 IAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYTLI--DTAG-IR 231
Query: 176 KKIHMLDSM----MMKNVRSAGIN-ADCIVVLVDACKAPER-----IDEILEEGVGDHKD 225
+K + + + +++ +++ I AD +++++DA + LE G
Sbjct: 232 RKGKVTEGVEKYSVLRTLKA--IERADVVLLVLDATEGITEQDLRIAGLALEAG------ 283
Query: 226 KLPILLVLNKKDLIKPGEIAKKL--EWYEKFTDVD--EVIPVSAKYGHGVEDIRDWILT 280
+++V+NK DL+K + ++ E K +D ++ +SA G GV+ + D I
Sbjct: 284 -KALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDE 341
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 6e-21
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 43/179 (24%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGI- 173
V ++G+PNVGKS+L N ++G+ +IVT+ TTR I + + +G + L DT GI
Sbjct: 220 VVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NG--IPVRLVDTAGIR 276
Query: 174 -----IEKKIHMLDSMMMKNVRSAGI--------NADCIVVLVDACKAPERIDEILEEGV 220
+E+ GI AD ++ ++DA + ++ D L E +
Sbjct: 277 ETDDVVER---------------IGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELL 321
Query: 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279
K PI++VLNK DL+ E+ + +I +SAK G G++ +R+ I
Sbjct: 322 ---PKKKPIIVVLNKADLVSKIELE-SEKLANGDA----IISISAKTGEGLDALREAIK 372
|
Length = 454 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 7e-20
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 21/176 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G+PNVGKS+L N ++G++ IV++ TTR I + L DT G I KK
Sbjct: 5 IAIIGRPNVGKSSLLNALLGEERVIVSDIAGTTRDSIDVPFEYDGQKYTLIDTAG-IRKK 63
Query: 178 IHMLDSM-MMKNVRSAGI--NADCIVVLVDACKAPERIDE-----ILEEGVGDHKDKLPI 229
+ + + +R+ AD +++++DA + D ILEEG +
Sbjct: 64 GKVTEGIEKYSVLRTLKAIERADVVLLVLDASEGITEQDLRIAGLILEEG-------KAL 116
Query: 230 LLVLNKKDLI-KPGEIAKKLE--WYEKFTDVD--EVIPVSAKYGHGVEDIRDWILT 280
++V+NK DL+ K + K+ E K +D ++ +SA G GV+ + D I
Sbjct: 117 IIVVNKWDLVEKDEKTMKEFEKELRRKLPFLDYAPIVFISALTGQGVDKLFDAIKE 172
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 41/187 (21%)
Query: 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT----RH--RILGICSGPEYQMILYDT 170
++ + G+ N GKS+L N + GQ ++IV++ P TT +L + GP ++L DT
Sbjct: 8 HIGIFGRRNAGKSSLINALTGQDIAIVSDVPGTTTDPVYKAMELLPL--GP---VVLIDT 62
Query: 171 PGI----------IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEG 219
G+ +EK +LD D +++VDA P + E++EE
Sbjct: 63 AGLDDEGELGELRVEKTREVLDK------------TDLALLVVDAGVGPGEYELELIEEL 110
Query: 220 VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279
+ K+P ++V+NK DL + +KLE +KF I VSA G G++++++ I+
Sbjct: 111 ---KERKIPYIVVINKIDLGEESAELEKLE--KKFG--LPPIFVSALTGEGIDELKEAII 163
Query: 280 TKLPLGP 286
LP
Sbjct: 164 ELLPEDF 170
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 6e-19
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 53/188 (28%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-----LGICSGPEYQMILYDTPG 172
V + G+PNVGKS+L N ++G++ +IVT+ TTR I L G + L DT G
Sbjct: 218 VVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD---G--IPLRLIDTAG 272
Query: 173 I------IEKKIHMLDSMMMKNVRSAGI--------NADCIVVLVDACKAPERID-EILE 217
I +EK GI AD +++++DA + D EILE
Sbjct: 273 IRETDDEVEK---------------IGIERSREAIEEADLVLLVLDASEPLTEEDDEILE 317
Query: 218 EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277
E P+++VLNK DL ++ ++ + VI +SAK G G++++R+
Sbjct: 318 E-----LKDKPVIVVLNKADLTGEIDLEEE--------NGKPVIRISAKTGEGIDELREA 364
Query: 278 ILTKLPLG 285
I G
Sbjct: 365 IKELAFGG 372
|
Length = 449 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 58/223 (26%), Positives = 102/223 (45%), Gaps = 12/223 (5%)
Query: 66 EMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPN 125
+ D +E E+D ++ L E + + + G VA++G+PN
Sbjct: 227 GLVEDAIEEQEYDQYAANLEGYELDEGDEDLLEGSGFV-AGDEKAGPKAVGVVAIVGRPN 285
Query: 126 VGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDS 183
VGKSTL N+++G++ ++V + P TR R+ +G +++ L DT G E + +DS
Sbjct: 286 VGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFK--LVDTGG-WEADVEGIDS 342
Query: 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243
+ + A AD +V +VD DE + + + P++L +NK D
Sbjct: 343 AIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRML--RRAGKPVVLAVNKID--DQAS 398
Query: 244 IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286
E+++ + E P+SA +G GV D+ D L L +
Sbjct: 399 EYDAAEFWK--LGLGEPYPISAMHGRGVGDLLDEALDSLKVAE 439
|
Length = 712 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 84.7 bits (211), Expect = 4e-18
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 51/189 (26%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR--------HRILGICSGPEYQMILYD 169
+A++G+PNVGKS+L N ++G++ IV++ TTR G +Y +I D
Sbjct: 176 IAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD------GQKYTLI--D 227
Query: 170 TPGI-----IEKKIHMLDSMM--MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD 222
T GI + + + S++ +K + AD +++++DA EG+ +
Sbjct: 228 TAGIRRKGKVTEGVEKY-SVIRTLKAIE----RADVVLLVIDA-----------TEGITE 271
Query: 223 ---------HKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVD--EVIPVSAKYGHG 270
+ +++V+NK DL+ + + K E + +D ++ +SA G G
Sbjct: 272 QDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQG 331
Query: 271 VEDIRDWIL 279
V+ + + I
Sbjct: 332 VDKLLEAID 340
|
Length = 435 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 8e-17
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 46/190 (24%)
Query: 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRH----RILGICSGPEYQMILYDTPG 172
VA G+ NVGKS+L N + +K L+ + P T+ + + L D PG
Sbjct: 2 VAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGD-------KFRLVDLPG 54
Query: 173 ------IIEKKIHMLDSMMM------KNVRSAGINADCIVVLVDACKAPERID----EIL 216
E + ++ +N++ +V+L+DA P ID E L
Sbjct: 55 YGYAKVSKEVREKWGK-LIEEYLENRENLK-------GVVLLIDARHGPTPIDLEMLEFL 106
Query: 217 EEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKFTDVDEVIPVSAKYGHGVE 272
EE +P L+VL K D +K E+AK L E F + VI S+K G G++
Sbjct: 107 EE------LGIPFLIVLTKADKLKKSELAKVLKKIKEELNLFNILPPVILFSSKKGTGID 160
Query: 273 DIRDWILTKL 282
++R I L
Sbjct: 161 ELRALIAEWL 170
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
| >gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 6e-16
Identities = 64/225 (28%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 70 DDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYASHPNHKSG---YVAVLGKPNV 126
D DE E ++ D+E+++ D A + G VAV+G+PNV
Sbjct: 1 YDDDEAEMRADGTWADE-----------SDWELDDEDLAELEAAEGGPLPVVAVVGRPNV 49
Query: 127 GKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM 186
GKSTL N+++G++ ++V + P TR R+ + + DT G E L + +
Sbjct: 50 GKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGG-WEPDAKGLQASVA 108
Query: 187 KNVRSAGINADCIVVLVDACKAPERIDE----ILEEGVGDHKDKLPILLVLNKKDLIKPG 242
+ A AD ++ +VDA DE +L + P++L NK D +
Sbjct: 109 EQAEVAMRTADAVLFVVDATVGATATDEAVARVL------RRSGKPVILAANKVDDERGE 162
Query: 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287
A L W + E PVSA +G GV D+ D +L LP P
Sbjct: 163 ADAAAL-WS---LGLGEPHPVSALHGRGVGDLLDAVLAALPEVPR 203
|
Length = 472 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 21/175 (12%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G+PNVGKS+L N ++G++ IV++ TTR I + +L DT G I +K
Sbjct: 181 IAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAG-IRRK 239
Query: 178 IHMLDSM-MMKNVRS--AGINADCIVVLVDACKAPERIDE-----ILEEGVGDHKDKLPI 229
+ +S+ R+ A AD +++++DA + D I E G I
Sbjct: 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG-------RGI 292
Query: 230 LLVLNKKDLIKPG-----EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279
++V+NK DL++ E KKL F D ++ +SA G G++ + + I
Sbjct: 293 VIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIK 347
|
Length = 444 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 1e-15
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 59/196 (30%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQ------TTRHRILGICS-GPEYQMILYD 169
V ++G PN GKSTL LS ++N KP+ TT LG+ ++ D
Sbjct: 3 VGLVGLPNAGKSTL--------LSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVIAD 54
Query: 170 TPGIIE-------------KKI-------HMLDSMMMKNVRSAGINADCIVVLVDACKAP 209
PG+IE + I H++D D V
Sbjct: 55 IPGLIEGASEGKGLGHRFLRHIERTRVLLHVIDLS----------GEDDPV--------- 95
Query: 210 ERIDEILEEGVGDHKDKL---PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266
E + I E + + L P ++VLNK DL+ E +KL+ K +V P+SA
Sbjct: 96 EDYETIRNE-LEAYNPGLAEKPRIVVLNKIDLLDAEERFEKLKELLKELKGKKVFPISAL 154
Query: 267 YGHGVEDIRDWILTKL 282
G G++++ + L
Sbjct: 155 TGEGLDELLKKLAKLL 170
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 5e-14
Identities = 58/211 (27%), Positives = 87/211 (41%), Gaps = 43/211 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI---- 173
VA++G PNVGK+TL N + G V N P T + G +++ + D PG
Sbjct: 6 VALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT 64
Query: 174 ---IEKKIHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPER----IDEILEEGVGDHK 224
++K+ R + D IV +VDA ER ++LE G+
Sbjct: 65 AYSEDEKV----------ARDFLLEGKPDLIVNVVDA-TNLERNLYLTLQLLELGI---- 109
Query: 225 DKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281
P++L LN D K I +KL K V V+P AK G G+E+++ I+
Sbjct: 110 ---PMILALNMIDEAKKRGIRIDIEKL---SKLLGV-PVVPTVAKRGEGLEELKRAIIEL 162
Query: 282 LPLGPA----YYPKDIVSEHPERFFVGEIIR 308
Y ++I E E + E R
Sbjct: 163 AESKTTPREVDYGEEIEEEIKELEALSEDPR 193
|
Length = 653 |
| >gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 8e-14
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 39/192 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI---- 173
+A++G PNVGK+TL N + G + V N P T + G Y++ + D PG
Sbjct: 3 IALVGNPNVGKTTLFNALTGARQ-HVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTYSLS 61
Query: 174 ---IEKKIHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPER----IDEILEEGVGDHK 224
E+K+ R + D I+ +VDA ER ++LE G+
Sbjct: 62 PYSEEEKV----------ARDYLLEEKPDVIINVVDATN-LERNLYLTLQLLELGI---- 106
Query: 225 DKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281
P+++ LN D + I KKL + V V+P SA+ G G+++++D I+
Sbjct: 107 ---PVVVALNMMDEAEKKGIKIDIKKL---SELLGV-PVVPTSARKGEGIDELKDAIIEV 159
Query: 282 LPLGPAYYPKDI 293
P I
Sbjct: 160 AEGKVPPAPLRI 171
|
Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190 |
| >gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 4e-13
Identities = 53/179 (29%), Positives = 77/179 (43%), Gaps = 43/179 (24%)
Query: 119 AVLGKPNVGKSTLANQMIG--QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI--- 173
A++G PNVGK+TL N + G QK V N P T + G ++ + D PG
Sbjct: 1 ALVGNPNVGKTTLFNALTGARQK---VGNWPGVTVEKKEGEFKLGGKEIEIVDLPGTYSL 57
Query: 174 ----IEKKIHMLDSMMMKNVRSA--GINADCIVVLVDACKAPER----IDEILEEGVGDH 223
++K+ R G D IV +VDA ER ++LE G
Sbjct: 58 TPYSEDEKV----------ARDFLLGEEPDLIVNVVDAT-NLERNLYLTLQLLELG---- 102
Query: 224 KDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279
LP+++ LN D + I KL E V V+P SA+ G G++++ D I
Sbjct: 103 ---LPVVVALNMIDEAEKRGIKIDLDKLS--ELL-GV-PVVPTSARKGEGIDELLDAIA 154
|
Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159 |
| >gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A++G PNVGKS+L N ++ Q +IV++ TTR + G + L DT GI E
Sbjct: 206 LAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA 265
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
++ + ++ A AD ++ ++DA + + D ++ + +K K P +LVLNK D
Sbjct: 266 -DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIID---LNKSKKPFILVLNKID 321
Query: 238 LI 239
L
Sbjct: 322 LK 323
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 6e-13
Identities = 61/191 (31%), Positives = 89/191 (46%), Gaps = 44/191 (23%)
Query: 113 HKSGY--VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ------TTRHRI-LGICSGPEY 163
+SG VA++G N GKSTL N + G + V + Q T RI L G E
Sbjct: 37 KRSGVPTVALVGYTNAGKSTLFNALTG---ADVLAEDQLFATLDPTTRRIKLP--GGREV 91
Query: 164 QMILYDTPGIIEKKIHMLDSMMMKNV---RS---AGINADCIVVLVDAC--KAPERID-- 213
+L DT G I H L V RS AD ++ +VDA E+I+
Sbjct: 92 --LLTDTVGFIRDLPHQL-------VEAFRSTLEEVAEADLLLHVVDASDPDREEQIETV 142
Query: 214 -EILEE-GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271
E+L+E G D +PI+LVLNK DL+ E+ ++L + + +SAK G G+
Sbjct: 143 EEVLKELGADD----IPIILVLNKIDLLDDEELEERLRAGR-----PDAVFISAKTGEGL 193
Query: 272 EDIRDWILTKL 282
+ +++ I L
Sbjct: 194 DLLKEAIEELL 204
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 30/215 (13%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT---RHRILGICSGPEYQMILYDTPGII 174
VA++G N GKSTL N + G V ++ T R + + G +++L DT G I
Sbjct: 195 VALVGYTNAGKSTLFNALTG-ADVYVADQLFATLDPTTRRIEL--GDGRKVLLTDTVGFI 251
Query: 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI------DEILEEGVGDHKDKLP 228
H L + AD ++ +VDA PE + +++L E D P
Sbjct: 252 RDLPHPLVEAFKSTLEEVK-EADLLLHVVDA-SDPEILEKLEAVEDVLAEIGADEI---P 306
Query: 229 ILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY 288
I+LVLNK DL++ EI +LE + +SAK G G++ +R+ I+ L
Sbjct: 307 IILVLNKIDLLEDEEILAELE-----RGSPNPVFISAKTGEGLDLLRERIIELLSGLRTE 361
Query: 289 YPKDIVSEHPERFF----VGEIIREKIFMQYRNEV 319
++ R G ++ E+ Y +V
Sbjct: 362 VTLELPYTDAGRLSWLHDNGIVLEEE----YGEDV 392
|
Length = 411 |
| >gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 2e-12
Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 58/196 (29%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQ------TTRHRILGICSGPEYQ-MILYD 169
V ++G PN GKSTL +S V+ KP+ TT LG+ + + ++ D
Sbjct: 160 VGLVGLPNAGKSTL--------ISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIAD 211
Query: 170 TPGIIEKK--------------------IHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209
PG+IE +H++D + + D +
Sbjct: 212 IPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDI--------SPEDGS------DPIEDY 257
Query: 210 ERIDEILEEGVGDHKDKL---PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266
E I L++ + +L P ++VLNK DL+ E+ + L+ ++ V P+SA
Sbjct: 258 EIIRNELKK----YSPELAEKPRIVVLNKIDLLDEEELEELLKELKEALGK-PVFPISAL 312
Query: 267 YGHGVEDIRDWILTKL 282
G G++++ + L
Sbjct: 313 TGEGLDELLYALAELL 328
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329 |
| >gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-12
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 33/191 (17%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYD 169
P +A G+ NVGKS+L N + QK L+ + P T+ L + ++ L D
Sbjct: 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQ---LINFFEVDDELRLVD 76
Query: 170 TPG------IIEKKIH---MLDSMMMKNVRSAGINADCIVVLVDACKAPERID----EIL 216
PG E K +++ + K G +V+L+DA P+ +D E L
Sbjct: 77 LPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKG-----VVLLIDARHPPKDLDREMIEFL 131
Query: 217 EEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKFTDVD-EVIPVSAKYGHGV 271
E +P+++VL K D +K E K+L E +K D V+ S+ G+
Sbjct: 132 LE------LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGI 185
Query: 272 EDIRDWILTKL 282
++++ IL L
Sbjct: 186 DELKAKILEWL 196
|
Length = 200 |
| >gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 9e-12
Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 58/198 (29%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQ------TTRHRILGICSGPEYQ-MILYD 169
V ++G PN GKSTL LS V+ KP+ TT LG+ + ++ D
Sbjct: 162 VGLVGLPNAGKSTL--------LSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVAD 213
Query: 170 TPGIIE-------------KKI-------HMLDSMMMKNVRSAGINADCIVVLVDACKAP 209
PG+IE + I H++D + + R D +
Sbjct: 214 IPGLIEGASEGVGLGLRFLRHIERTRVLLHVID-LSPIDGR-------------DPIEDY 259
Query: 210 ERIDEILEEGVGDHKDKL---PILLVLNKKDLIKPGEIAKKLEWY-EKFTDVDEVIPVSA 265
+ I LE+ + KL P ++VLNK DL E ++L+ + + +SA
Sbjct: 260 QTIRNELEK----YSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISA 315
Query: 266 KYGHGVEDIRDWILTKLP 283
G++++ + L
Sbjct: 316 LTREGLDELLRALAELLE 333
|
Length = 369 |
| >gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 1e-11
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRH----RILGICSGPEYQMILYDTPG 172
+A G+ NVGKS+L N + +K L+ + P T+ + ++ L D PG
Sbjct: 27 IAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------NDKLRLVDLPG 79
Query: 173 I------IEKKIHMLDSMMM-----KNVRSAGINADCIVVLVDACKAPERIDEILEEGVG 221
E+K + +N++ +V+L+D+ + +D + E +
Sbjct: 80 YGYAKVSKEEKEKWQKLIEEYLRTRENLK-------GVVLLIDSRHPLKELDLQMIEWLK 132
Query: 222 DHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKF-TDVDEVIPVSAKYGHGVEDIRDWIL 279
++ +P+L+VL K D +K GE K+L + + DEVI S+ G++++R I
Sbjct: 133 EYG--IPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIA 190
Query: 280 TKL 282
L
Sbjct: 191 KWL 193
|
Length = 196 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-11
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178
++GK GKS+L N + G +++ V ++ TTR + ++L D PG+ E+
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERGR 60
Query: 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE--ILEEGVGDHKDKLPILLVLNKK 236
D + R AD ++ L+DA D L G P+L VLN+
Sbjct: 61 R--DREYEELYRRLLPEADLVLWLLDADDRALAADHDFYLLPLAGHDA---PLLFVLNQ- 114
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
VD V+ VSA+ G G++++ + ++T L
Sbjct: 115 --------------------VDPVLAVSARTGWGLDELAEALITAL 140
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 4e-10
Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173
V+G PNVGKSTL N++ G+K++ V NKP TR I GP + L DTPGI
Sbjct: 118 AMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTRG-QQWIRIGPNIE--LLDTPGI 170
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 91 DRNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT 150
R E + + V V+G PNVGKSTL N+++G+K++ +N+P TT
Sbjct: 108 IRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTT 167
Query: 151 RHRILGICSGPEYQMILYDTPGIIEKKI 178
+ I I + + L DTPGII K
Sbjct: 168 KG-IQWI--KLDDGIYLLDTPGIIPPKF 192
|
Length = 322 |
| >gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-10
Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 37/182 (20%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRH----RILGICSGPEYQM 165
P +A G+ NVGKS+L N + +K L+ + P T+ +
Sbjct: 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV-------NDGF 66
Query: 166 ILYDTPGI------IEKKIHMLDSMMM------KNVRSAGINADCIVVLVDACKAPERID 213
L D PG E+K ++ +N++ +V+L+D + +D
Sbjct: 67 RLVDLPGYGYAKVSKEEKEKWQK-LIEEYLEKRENLK-------GVVLLMDIRHPLKELD 118
Query: 214 EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV---DEVIPVSAKYGHG 270
+ E + + +P+L+VL K D +K E+ K+L+ +K D V S+ G
Sbjct: 119 LEMIEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDSVQLFSSLKKTG 176
Query: 271 VE 272
++
Sbjct: 177 ID 178
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178 |
| >gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 6e-10
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 73/234 (31%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQ------TTRHRILGIC-SGPEYQMILYD 169
V ++G PNVGKSTL LS+V+N KP+ TT LG+ + ++ D
Sbjct: 161 VGLVGFPNVGKSTL--------LSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMAD 212
Query: 170 TPGIIE-------------KKI-------HMLDSMMMKNVRSAGINADCIVVLVDACKAP 209
PG+IE + I H++D M +G D +
Sbjct: 213 IPGLIEGASEGVGLGHQFLRHIERTRVIVHVID-M-------SGSEGR------DPIEDY 258
Query: 210 ERIDEILEEGVGDHKDKL---PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266
E+I++ L+ + +L P ++V NK DL E + LE +++ +V P+SA
Sbjct: 259 EKINKELKL----YNPRLLERPQIVVANKMDLP---EAEENLEEFKEKLGP-KVFPISAL 310
Query: 267 YGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP 320
G G++++ Y +++ E PE E + E+++ ++ E
Sbjct: 311 TGQGLDELL------------YAVAELLEETPEFPLEEEEVEEEVYYKFEEEEK 352
|
Length = 424 |
| >gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 1e-09
Identities = 57/182 (31%), Positives = 84/182 (46%), Gaps = 39/182 (21%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNK------PQTTRHRILGICSGPE-YQMILYDT 170
VA++G N GKSTL N + G ++ P TTR L P+ +++L DT
Sbjct: 192 VALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDP-TTRRLDL-----PDGGEVLLTDT 244
Query: 171 PGIIEKKIHMLDSMMMKNVRS---AGINADCIVVLVDACKAPERID------EILEE-GV 220
G I H L + R+ AD ++ +VDA P+R + ++LEE G
Sbjct: 245 VGFIRDLPHEL----VAAFRATLEEVREADLLLHVVDA-SDPDREEQIEAVEKVLEELGA 299
Query: 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280
D +P LLV NK DL+ I + E Y E + VSAK G G++ + + I
Sbjct: 300 ED----IPQLLVYNKIDLLDEPRIERLEEGYP------EAVFVSAKTGEGLDLLLEAIAE 349
Query: 281 KL 282
+L
Sbjct: 350 RL 351
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 44/195 (22%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSI---------VTNKPQTTRHRILGICSG------PE 162
V V+G + GK+TL ++ Q +I + + R R + I +G P+
Sbjct: 2 VGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPK 61
Query: 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE----RIDEILEE 218
++ DTPG H D AD +++VDA + E I
Sbjct: 62 RRINFIDTPG------H-EDFSK--ETVRGLAQADGALLVVDANEGVEPQTREHLNIALA 112
Query: 219 GVGDHKDKLPILLVLNKKDLIKPG----------EIAKKLEWYEKFTDVDEVIPVSAKYG 268
G LPI++ +NK D + E+ K + + +IP+SA G
Sbjct: 113 G------GLPIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISALTG 166
Query: 269 HGVEDIRDWILTKLP 283
G+E++ D I+ LP
Sbjct: 167 EGIEELLDAIVEHLP 181
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181
G PNVGKSTL N + G V N P T + G + + D PG I+ L
Sbjct: 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPG-----IYSL 54
Query: 182 D--SMMMKNVRSAGIN--ADCIVVLVDACKAPER----IDEILEEGVGDHKDKLPILLVL 233
S+ + R +N D +V +VDA ER ++LE G+ P++L L
Sbjct: 55 TTFSLEEEVARDYLLNEKPDLVVNVVDA-SNLERNLYLTLQLLELGI-------PMILAL 106
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
N D + I E E+ V V+P SA G G+E ++D I
Sbjct: 107 NLVDEAEKKGIRIDEEKLEERLGV-PVVPTSATEGRGIERLKDAI 150
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 4e-09
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 16/91 (17%)
Query: 195 NADCIVVLVDACKAPE----RIDEIL---EEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247
N D ++++ + K P +D L E + ++VLNK DL+ E+ +
Sbjct: 2 NVDQVLIVF-SLKEPFFNLRLLDRYLVAAEAS------GIEPVIVLNKADLVDDEELEEL 54
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
LE YEK V+ VSAK G G++++R+ +
Sbjct: 55 LEIYEKL-GYP-VLAVSAKTGEGLDELRELL 83
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 4e-09
Identities = 49/208 (23%), Positives = 72/208 (34%), Gaps = 42/208 (20%)
Query: 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLS------IVTNKPQTTRHRILGICSGPEYQM 165
K + VLG VGK+TL N+++G + I P T ++
Sbjct: 2 FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIE-----PYRRNIKL 56
Query: 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE---GVGD 222
L+DT G E S+ A+ I+++ D E DE+ EE + +
Sbjct: 57 QLWDTAGQEE-----YRSLR----PEYYRGANGILIVYD-STLRESSDELTEEWLEELRE 106
Query: 223 HK-DKLPILLVLNKKDLI---KPGEIAKKLEWYEKFTDVDE------------VIPVSAK 266
D +PILLV NK DL E E V ++ SAK
Sbjct: 107 LAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAK 166
Query: 267 Y--GHGVEDIRDWILTKLPLGPAYYPKD 292
G V ++ +L KL
Sbjct: 167 SLTGPNVNELFKELLRKLLEEIEKLVLK 194
|
Length = 219 |
| >gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 114 KSG--YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYD 169
KSG VA++G P+VGKSTL N++ K S V + P TT + G+ G + Q++ D
Sbjct: 60 KSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLL--D 116
Query: 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE--GVGDHKDKL 227
PGIIE + V S NAD I++++D + P D I E VG +K
Sbjct: 117 LPGIIEGA--SSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKR 174
Query: 228 PILLVLNKKDL 238
P + + KK+
Sbjct: 175 PPDVTIKKKES 185
|
Length = 365 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 6e-09
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 11/65 (16%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----RILGICSGPEYQMILYDTPGI 173
++G PNVGKSTL N++ G+K++ V N+P T+ ++ + L DTPGI
Sbjct: 121 AMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-------SDGLELLDTPGI 173
Query: 174 IEKKI 178
+ K
Sbjct: 174 LWPKF 178
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-09
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 43/171 (25%)
Query: 117 YVAVLGKPNVGKSTLANQMIGQKL---SIV--TNKPQTTRHRIL-GICSGPEYQMILYDT 170
+AV+G+ + GKSTL N ++G+++ + T R+ +L G+ L DT
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVLRYGLLKGVV--------LVDT 53
Query: 171 PGIIEKKIHMLDSMMMKN---VRSAGINADCIVVLVDACKA---PER--IDEILEEGVGD 222
PG L+S + + S AD ++ ++ A + ER + EIL+
Sbjct: 54 PG--------LNSTIEHHTEITESFLPRADAVIFVLSADQPLTESEREFLKEILKWSGK- 104
Query: 223 HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDE-------VIPVSAK 266
I VLNK DL+ E+ + LE+ + V E + PVSAK
Sbjct: 105 -----KIFFVLNKIDLLSEEELEEVLEYSREELGVLELGGGEPRIFPVSAK 150
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 22/175 (12%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIE 175
+ V G PNVGKS+L ++ K + P TT+ +G Q+I DTPG+++
Sbjct: 171 IVVAGYPNVGKSSLVRKLTTAKPEV-APYPFTTKGIHVGHFERGYLRIQVI--DTPGLLD 227
Query: 176 K------KIHMLDSMMMKNVRSAGINADCIVVLVDA---CKAPERIDEILEEGVGDHKDK 226
+ +I + ++++ A I+ L D C L E + +
Sbjct: 228 RPLEERNEIERQAILALRHL------AGVILFLFDPSETCGYSLEEQISLLEEIKELFKA 281
Query: 227 LPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281
PI++V+NK D+ ++ +++E +E + +SA G G++ +R+ +
Sbjct: 282 -PIVVVINKIDIADEEKL-EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334
|
Length = 346 |
| >gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 2e-08
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 54/193 (27%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQ------TTRHRILGICSGPEYQ-MILYD 169
V ++G PN GKSTL +S V+ KP+ TT H LG+ +Y+ ++ D
Sbjct: 161 VGLVGLPNAGKSTL--------ISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIAD 212
Query: 170 TPGIIE-------------KKI-------HMLDSMMMKNVRSAGINADCIVVLVDACKAP 209
PG+IE K I H++D + VD +
Sbjct: 213 IPGLIEGASEGAGLGHRFLKHIERTRLLLHLVD-----------------IEAVDPVEDY 255
Query: 210 ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269
+ I LE+ + DK P +LVLNK DL+ E +K E V +SA G
Sbjct: 256 KTIRNELEKYSPELADK-PRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGE 314
Query: 270 GVEDIRDWILTKL 282
G++++ + L
Sbjct: 315 GLDELLRALWELL 327
|
Length = 335 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 2e-08
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 9/64 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RI-LGICSGPEYQMILYDTPGII 174
++G PNVGKSTL N++ G+K++ N+P T+ I LG + L DTPGI+
Sbjct: 124 AMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK------GLELLDTPGIL 177
Query: 175 EKKI 178
K+
Sbjct: 178 WPKL 181
|
Length = 287 |
| >gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 49/214 (22%), Positives = 76/214 (35%), Gaps = 52/214 (24%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQ------TTRHRILGICS-GPEYQMILYD 169
V +LG PN GKST + V+ KP+ TT LG+ E ++ D
Sbjct: 162 VGLLGLPNAGKSTF--------IRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVAD 213
Query: 170 TPGIIE-------------KKI-------HMLDSMMMKNVRSAGINADCIVVLVDACKAP 209
PG+IE K + H++D + NA I
Sbjct: 214 IPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVE-NARII------INEL 266
Query: 210 ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY-EKFTDVDEVIPVSAKYG 268
E+ L E P LV NK DL+ E ++ + E V +SA G
Sbjct: 267 EKYSPKLAE--------KPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318
Query: 269 HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFF 302
GV+++ ++T + P ++ + F
Sbjct: 319 LGVKELCWDLMTFIEENPREEAEEAEAPEKVEFM 352
|
Length = 390 |
| >gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-08
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 25/173 (14%)
Query: 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIH 179
G PNVGKS+L N++ K V P TT+ +G +Q+I DTPGI++
Sbjct: 7 GYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVI--DTPGILD---R 60
Query: 180 MLDSMMMKNVRSAGINA-----DCIVVLVDA---CKAPERIDEILE--EGVGDHKDKLPI 229
L+ + I A ++ +D C I+E L + + +K P+
Sbjct: 61 PLEE--RNTIEMQAITALAHLRAAVLFFIDPSETCGYS--IEEQLSLFKEIKPLFNK-PV 115
Query: 230 LLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
++VLNK DL+ ++++ + EK + +EVI +S GV+++++ L
Sbjct: 116 IVVLNKIDLLTEEDLSEIEKELEK--EGEEVIKISTLTEEGVDELKNKACELL 166
|
NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 5e-08
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDLIK---PGEIAKK 247
N D ++ +VD+ ERI+E E + + ++ P+L++ NK+DL E+ +
Sbjct: 66 NTDGLIFVVDSS-DRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELIEL 124
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281
L + P SA G G+++ DW++ +
Sbjct: 125 LGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 8e-08
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VA++G+PNVGKS+L NQ+ ++ ++V + TTR + I + DT G I+++
Sbjct: 453 VALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAG-IKRR 511
Query: 178 IHML---DSMMMKNVRSAGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVL 233
H L + ++A ++ + L DA + D +++ V + ++LV
Sbjct: 512 QHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGR---ALVLVF 568
Query: 234 NKKDLIKPGEIAKKL---EWYEKFTDVD--EVIPVSAKYGHGV 271
NK DL+ E ++ W +F V + +SAK G
Sbjct: 569 NKWDLMD--EFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHT 609
|
Length = 712 |
| >gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 49/197 (24%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQM---ILYDTPGI- 173
+ +G+ NVGKSTL ++ G+K+ V +P TR Y IL D PG
Sbjct: 12 IVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPN-------HYDWGDFILTDLPGFG 63
Query: 174 ----IEKKIHMLDSMMMKNVRSAGINADCI---VVLVDACKAPERID------EI----- 215
+ K++ + + + VR NAD I V++VD E I+ EI
Sbjct: 64 FMSGVPKEVQ--EKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVE 121
Query: 216 ----LEEGVGDHKDKLPILLVLNKKDLIKP-----GEIAKKLEWYEKFTDVDEVI-PVSA 265
L E +P ++ +NK D IK EIA++L Y + ++I P+SA
Sbjct: 122 MFDFLRE------LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISA 175
Query: 266 KYGHGVEDIRDWILTKL 282
K G G+E++++ I +L
Sbjct: 176 KKG-GIEELKEAIRKRL 191
|
Length = 201 |
| >gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG) | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 4e-07
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175
VA++G P+VGKSTL +++ K S V TT + G+ G + Q++ D PGIIE
Sbjct: 3 VALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVMEYKGAKIQLL--DLPGIIE 59
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE--GVGDHKDKLPILLVL 233
+ V + AD I++++DA K + + + E GVG +K P + +
Sbjct: 60 GA--SDGKGRGRQVIAVARTADLILIVLDATKPEGQREILERELEGVGIRLNKKPPNVTI 117
Query: 234 NKKDL 238
KK
Sbjct: 118 KKKKK 122
|
The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-07
Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 59/207 (28%)
Query: 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQ---------KLSIVTNKPQTTRHRILGI--- 157
H N + ++G + GK+TL + ++ K + V +K + R R GI
Sbjct: 3 HRN-----IGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERER--GITIK 55
Query: 158 -----CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV-RSAGINADCIVVLVDACKAP-- 209
+ + + DTPG H+ K + R A AD +++VDA +
Sbjct: 56 IAAVSFETKKRLINIIDTPG------HV---DFTKEMIRGASQ-ADGAILVVDAVEGVMP 105
Query: 210 ---ERIDEILEEGVGDHKDKLPILLVLNKKDLI---KPGEIAKKL-------EWYEKFTD 256
E + GV PI++ +NK D + + E+ +++ + +
Sbjct: 106 QTREHLLLAKTLGV-------PIIVFINKIDRVDDAELEEVVEEISRELLEKYGFGG--E 156
Query: 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283
V+P SA G G++++ + + LP
Sbjct: 157 TVPVVPGSALTGEGIDELLEALDLYLP 183
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-06
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 28/114 (24%)
Query: 179 HMLDSM-----MMKNVRSAGINADCIVVLVDACKAP-----ERIDEILEEGVGDHKDKLP 228
HM ++ +K V D ++ + DA + P +D+IL +K P
Sbjct: 5 HMAKALRQIKEKLKLV-------DVVIEVRDA-RIPLSSRNPDLDKIL-------GNK-P 48
Query: 229 ILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L+VLNK DL P + K L++++ + V+ V+AK G GV+ + L
Sbjct: 49 RLIVLNKADLADPAKTKKWLKYFKS--QGEPVLFVNAKNGKGVKKLLKKAKKLL 100
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPIL 230
I HM + + ++ + D +V +VDA + P R E+ E V + P L
Sbjct: 14 IQWFPGHMKKAK--RQLKEVLKSVDVVVEVVDA-RDPLGTRNPEL-ERIVK----EKPKL 65
Query: 231 LVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280
LVLNK DL P E+ KK + Y K + + I VSAK G + IR +
Sbjct: 66 LVLNKADLA-PKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEK 114
|
Length = 322 |
| >gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-----LGICSGPEYQMILYDTPG 172
VA++GKPNVGKS+L N++ G++ S+V + TT + LG G ++ + DT G
Sbjct: 214 VALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG---GKTWRFV--DTAG 268
Query: 173 IIEKKIHMLD------SMMMKNVRSAGINADCIVVLVDA 205
+ +++ S+ A A+ VVL+DA
Sbjct: 269 -LRRRVKQASGHEYYASLRTHAAIEA---AEVAVVLIDA 303
|
Length = 472 |
| >gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-06
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 19/169 (11%)
Query: 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC---SGPEYQMILYDTPGIIE 175
++G PNVGKSTL + + K+ I + P TT +G+ G + Q+I D PG+++
Sbjct: 1 GLVGLPNVGKSTLLSALTSAKVEI-ASYPFTTLEPNVGVFEFGDGVDIQII--DLPGLLD 57
Query: 176 KKIHMLDSMMMKNVRSAGIN-ADCIVVLVDACKAP-----ERIDEILEE--GVGDHKDKL 227
+ + A + +D I+ ++DA + E + EE G
Sbjct: 58 GAS---EGRGLGEQILAHLYRSDLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLKNK 114
Query: 228 PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276
P ++V NK D+ + K +K V+P SA G++ +
Sbjct: 115 PEMIVANKIDMASENNL--KRLKLDKLKRGIPVVPTSALTRLGLDRVIR 161
|
The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167 |
| >gnl|CDD|206677 cd01890, LepA, LepA also known as Elongation Factor 4 (EF4) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 55/203 (27%), Positives = 78/203 (38%), Gaps = 83/203 (40%)
Query: 127 GKSTLANQMIGQKLSIVTN---KPQTT------RHRILGI-------------CSGPEYQ 164
GKSTLA++++ + V+ K Q R R GI G EY
Sbjct: 12 GKSTLADRLL-ELTGTVSEREMKEQVLDSMDLERER--GITIKAQAVRLFYKAKDGEEYL 68
Query: 165 MILYDTPGIIEKKIHMLDSMMMKNV-------RSAGINADC--IVVLVDACK-------- 207
+ L DTPG H V RS A C +++VDA +
Sbjct: 69 LNLIDTPG------H---------VDFSYEVSRSL---AACEGALLVVDATQGVEAQTLA 110
Query: 208 ----APERIDEILEEGVGDHKDKLPILLVLNKKDLI--KPGEIAKKLEWYEKF-TDVDEV 260
A E L I+ V+NK DL P + +++E + D E
Sbjct: 111 NFYLALEN--------------NLEIIPVINKIDLPAADPDRVKQEIE--DVLGLDASEA 154
Query: 261 IPVSAKYGHGVEDIRDWILTKLP 283
I VSAK G GVED+ + I+ ++P
Sbjct: 155 ILVSAKTGLGVEDLLEAIVERIP 177
|
LepA (also known as elongation factor 4, EF4) belongs to the GTPase family and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. Length = 179 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 16/82 (19%)
Query: 195 NADCIVVLVDA-----CKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE 249
D ++ ++DA + P IDEI +K P L+VLNK DL P + L+
Sbjct: 21 LVDVVIEVLDARIPLSSRNPM-IDEIR-------GNK-PRLIVLNKADLADPAVTKQWLK 71
Query: 250 WYEKFTDVDEVIPVSAKYGHGV 271
++E+ + + ++AK G GV
Sbjct: 72 YFEE--KGIKALAINAKKGKGV 91
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 24/80 (30%)
Query: 118 VAVLGKPNVGKSTLANQMI----GQKLSIVTNK-PQTTRHRILGICSGPEYQMI------ 166
V V+G NVGKSTL N++I G+K I T++ P TT +I I
Sbjct: 163 VYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI----------EIPLDDGS 212
Query: 167 -LYDTPGIIEKK--IHMLDS 183
LYDTPGII + H L +
Sbjct: 213 FLYDTPGIIHRHQMAHYLSA 232
|
Length = 365 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 20/180 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIV----------TNKPQTTRHRILGICSGPEYQMIL 167
+ V+G GK+T + + L I +P T I + + L
Sbjct: 13 IVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHL 72
Query: 168 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL 227
+ TPG M A +VLVD+ + E + + + ++ +
Sbjct: 73 FGTPG------QERFKFMW---EILSRGAVGAIVLVDSSRPITFHAEEIIDFL-TSRNPI 122
Query: 228 PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287
P+++ +NK+DL K E + VI + A G G D D +L K LG A
Sbjct: 123 PVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLKDLLGSA 182
|
Length = 187 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-05
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 20/97 (20%)
Query: 195 NADCIVVLVDACKAPERIDE-------ILEEGVGDHKDKL---PILLVLNKKDL---IKP 241
N D ++ +VD+ +RI+E +L E ++L P+L++ NK+DL +
Sbjct: 81 NTDAVIFVVDSA-DRDRIEEAKEELHALLNE------EELADAPLLILANKQDLPGAMSE 133
Query: 242 GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
EI + L +E E+ SA G G+++ DW+
Sbjct: 134 AEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWL 170
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-------EYQM 165
G V V+G NVGKSTL N ++ V + R L + P + +
Sbjct: 123 KYRGDVYVVGATNVGKSTLINALLKSNGGKVQAQALVQR---LTVSPIPGTTLGLIKIPL 179
Query: 166 ----ILYDTPGI 173
LYDTPGI
Sbjct: 180 GEGKKLYDTPGI 191
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 34/171 (19%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKL-----SIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
+AVLG +VGKS+L Q + + N ++ G EY + + DT G
Sbjct: 4 IAVLGSRSVGKSSLTVQFVEGHFVESYYPTIEN--TFSKIITYK---GQEYHLEIVDTAG 58
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPIL 230
E I + GI+ I+V + + +++ + + D K+ +PI+
Sbjct: 59 QDEYSILPQKYSI-------GIHG-YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV 110
Query: 231 LVLNKKDL-----IKPGEIAKKL--EWYEKFTDVDEVIPVSAKYGHGVEDI 274
LV NK DL + E KKL W F + SAK VE+
Sbjct: 111 LVGNKSDLHMERQVSAEE-GKKLAESWGAAFLE------SSAKENENVEEA 154
|
Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 195 NADCIVVLVDACKAPERIDEI---LEEGVGDHK-DKLPILLVLNKKDLIK---PGEIAKK 247
N D ++ ++D +R +E L E + + K +P+L+ NK+DL+ E+A+
Sbjct: 82 NTDVLIYVID-SADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAAPAEEVAEA 140
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
L ++ + SAK G G+++ +W+
Sbjct: 141 LNLHDIRDRSWHIQACSAKTGEGLQEGMNWV 171
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 1e-04
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR--HRILGICSGPEYQMILYDTPGIIE 175
VAVLG P VGK+ + Q + Q+ P R +R + SG Y + + D P +
Sbjct: 3 VAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-------EILEEGVGDHKDKLP 228
M R N+ +++ D C +P+ +ILE +K+ P
Sbjct: 62 YPGTAGQEWMDPRFRGLR-NSRAFILVYDIC-SPDSFHYVKLLRQQILETRPAGNKEP-P 118
Query: 229 ILLVLNKKDLIK 240
I++V NK+D +
Sbjct: 119 IVVVGNKRDQQR 130
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 16/90 (17%)
Query: 196 ADCIVVLVDACKAPE-----RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 250
AD ++ +VDA + PE +++ + E K +++VLNK DL+ P E+ +K W
Sbjct: 12 ADVVLEVVDA-RDPELTRSRKLERMALE-----LGK-KLIIVLNKADLV-PREVLEK--W 61
Query: 251 YEKFTDVD-EVIPVSAKYGHGVEDIRDWIL 279
E F V+ VSA+ G +R I
Sbjct: 62 KEVFESEGLPVVYVSARERLGTRILRRTIK 91
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 118 VAVLGKPNVGKSTLANQMIGQ----KLSIVTNK-PQTTRHRILGICSGP-EYQMILYDTP 171
V V+G NVGKS+L N+++ Q K I T+ P TT L + P + LYDTP
Sbjct: 157 VYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTT----LDLIEIPLDDGHSLYDTP 212
Query: 172 GII 174
GII
Sbjct: 213 GII 215
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360 |
| >gnl|CDD|217326 pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDA--CKAPE-RIDEILEEGVGD 222
L+DTPG IE H +S+ V LVD P +L
Sbjct: 93 YLFDTPGQIELFTH-WESLARGVEALEASLRLGAVYLVDTRRLTDPSDFFSGLLYALSIM 151
Query: 223 HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267
+ LP ++ LNK DL+ L+W+ D+ ++ +
Sbjct: 152 LRLGLPFVVALNKFDLLSLE---FALKWFTDPDDLQLLLELDPSK 193
|
Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity. Length = 235 |
| >gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 29/192 (15%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G GKS+L N + ++ V+ T S ++L+DTPG+ + K
Sbjct: 42 VLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGK 101
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-----ILEEGVGDHKDKLPILLV 232
D+ + R D ++ L+ A DE ++ G+ +L V
Sbjct: 102 DK--DAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDK-----RVLFV 154
Query: 233 LNKKDLIKPGE----------------IAKKLE-WYEKFTDVDEVIPVSAKYGHGVEDIR 275
+ + D +PG I +K E F +V V+ VS + G++++
Sbjct: 155 VTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELV 214
Query: 276 DWILTKLPLGPA 287
++T LP+
Sbjct: 215 RALITALPVEAR 226
|
Length = 296 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 6e-04
Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 38/173 (21%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-----RHRILGICSGPEYQMILYDTPG 172
+ ++G VGK++L + + K S ++T + + + + G + ++ ++DT G
Sbjct: 3 IVLIGDSGVGKTSLLLRFVDNKFS---ENYKSTIGVDFKSKTIEV-DGKKVKLQIWDTAG 58
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPI 229
E+ S+ R A +++ D E +D+ L E + ++ +PI
Sbjct: 59 -QER----FRSITSSYYR----GAHGAILVYDVTNRESFENLDKWLNE-LKEYAPPNIPI 108
Query: 230 LLVLNKKDLIKPGEI--------AKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274
+LV NK DL ++ AK+ SAK G V++
Sbjct: 109 ILVGNKSDLEDERQVSTEEAQQFAKENGL--------LFFETSAKTGENVDEA 153
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.002
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 16/81 (19%)
Query: 196 ADCIVVLVDACKAP-----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 250
D ++ ++DA + P ID+I+ +K P LL+LNK DL P K +E+
Sbjct: 25 VDVVIEVLDA-RIPLSSENPMIDKII-------GNK-PRLLILNKSDLADPEVTKKWIEY 75
Query: 251 YEKFTDVDEVIPVSAKYGHGV 271
+E+ + + ++AK G GV
Sbjct: 76 FEE--QGIKALAINAKKGQGV 94
|
Length = 287 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEK---- 253
+V +VD P + L E +G P++LV NK DL+ K + + +W +K
Sbjct: 37 VVHVVDIFDFPGSLIPGLAELIG----AKPVILVGNKIDLLPKDVKPNRLKQWVKKRLKI 92
Query: 254 -FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285
+ +VI VSAK G GVE++ + I
Sbjct: 93 GGLKIKDVILVSAKKGWGVEELIEEIKKLAKYR 125
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.002
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH 152
+ ++G PNVGKS+L N ++G K V++ P T+H
Sbjct: 80 LNEATIGLVGYPNVGKSSLINALVGSKKVSVSSTPGKTKH 119
|
Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140 |
| >gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (93), Expect = 0.003
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 227 LPILLVLNKKDLI--KPGEIAKKLEWYEKFTDV-----DEVIPVSAKYGHGVEDIRDWIL 279
L I+ VLNK DL P + +++E DV + + VSAK G G+E++ + I+
Sbjct: 127 LEIIPVLNKIDLPAADPERVKQEIE------DVIGIDASDAVLVSAKTGIGIEEVLEAIV 180
Query: 280 TKLP 283
++P
Sbjct: 181 ERIP 184
|
Length = 600 |
| >gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.003
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 28/168 (16%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKP---QTTRHRILGICSGPEYQMILYDTPGII 174
+ VLG VGKS L + + + + P + R +I+ G Y + + DT G
Sbjct: 2 LVVLGAGGVGKSALTIRFVSGEF-VEEYDPTIEDSYRKQIV--VDGETYTLDILDTAGQE 58
Query: 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE--GVGDHKDKLPILLV 232
E M D + + +V + + ++ E I I E+ V D K+ +PI+LV
Sbjct: 59 EFSA-MRDQYIRN------GDGFILVYSITSRESFEEIKNIREQILRVKD-KEDVPIVLV 110
Query: 233 LNKKDLIK----PGEIAKKL--EWYEKFTDVDEVIPVSAKYGHGVEDI 274
NK DL E + L EW F + SAK ++++
Sbjct: 111 GNKCDLENERQVSTEEGEALAEEWGCPFLE------TSAKTNINIDEL 152
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 107 YASHPNHKSGYVAVLGKPNVGKSTLANQMIGQK---LSIVTNKPQTTRH-RILGICSGPE 162
+ K V V+G P VGKS++ N + G+ S + P T+ +++ I S
Sbjct: 91 KELAIDGKPVIVGVVGYPKVGKSSIINALKGRHSASTSPIPGSPGYTKGIQLVRIDS--- 147
Query: 163 YQMILYDTPGI 173
++ L DTPG+
Sbjct: 148 -KIYLIDTPGV 157
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 118 VAVLGKPNVGKSTLANQMIG-QKLSIVTNKPQTTR-HRILGICSGPEYQMILYDTPGIIE 175
+ VLGK VGKS+ N + G +K+S+ + +T R + G + +I DTPG++E
Sbjct: 34 ILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTVDGFKLNII--DTPGLLE 91
Query: 176 KKIHMLDSMMMKNVRS 191
+ ++ ++ ++
Sbjct: 92 SQDQRVNRKILSIIKR 107
|
The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248 |
| >gnl|CDD|206676 cd01889, SelB_euk, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 26/126 (20%)
Query: 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER--IDEILEEGV 220
YQ+ L D PG H + +++ + D ++++VDA K + + ++ +
Sbjct: 68 YQITLVDCPG------H---ASLIRTIIGGAQIIDLMLLVVDAKKGIQTQTAECLV---I 115
Query: 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK----------FTDVDEVIPVSAKYGHG 270
G+ K P+++VLNK DLI E +K+E +K D +IPVSAK G G
Sbjct: 116 GELLCK-PLIVVLNKIDLIPEEERKRKIEKMKKRLQKTLEKTRLKDS-PIIPVSAKPGEG 173
Query: 271 VEDIRD 276
++
Sbjct: 174 EAELGG 179
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains eukaryotic SelBs and some from archaea. Length = 192 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 348 | |||
| COG1159 | 298 | Era GTPase [General function prediction only] | 100.0 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 100.0 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 100.0 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 100.0 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 100.0 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.96 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.95 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.94 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.92 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.91 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.91 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.91 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.91 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.9 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.9 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.9 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.9 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.9 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.89 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.89 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.89 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.89 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.89 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.89 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.88 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.88 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.88 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.88 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.88 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.88 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.87 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.87 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.87 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.87 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.87 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.87 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.87 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.87 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.87 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.87 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.87 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.87 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.87 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.87 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.87 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.86 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.86 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.86 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.86 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.86 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.86 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.86 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.86 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.86 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.86 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.86 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.86 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.86 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.86 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.86 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.86 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.86 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.86 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.86 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.86 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.86 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.86 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.86 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.86 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.86 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.86 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.86 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.86 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.86 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.86 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.86 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.86 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.85 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.85 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.85 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.85 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.85 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.85 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.85 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.85 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.85 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.85 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.85 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.85 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.85 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.85 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.85 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.85 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.85 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.85 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.85 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.85 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.85 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.85 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.85 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.85 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.85 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.85 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.85 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.85 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.85 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.85 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.85 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.85 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.85 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.85 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.84 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.84 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.84 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.84 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.84 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.84 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.84 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.84 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.84 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.84 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.84 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.84 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.84 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.84 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.84 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.84 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.84 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.83 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.83 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.83 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.83 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.83 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.83 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.83 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.83 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.83 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.83 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.83 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.83 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.83 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.82 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.82 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.82 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.82 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.82 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.82 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.82 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.82 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.81 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.81 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.81 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.81 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.81 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.81 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.81 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.8 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.8 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.8 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.8 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.8 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.8 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.8 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.8 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.8 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.8 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.8 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.8 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.79 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.79 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.79 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.79 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.79 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.79 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.79 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.78 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.78 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.78 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.78 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.78 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.78 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.78 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.77 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.77 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.76 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.76 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.76 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.76 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.75 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.75 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.75 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.75 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.74 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.74 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.74 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.74 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.74 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.73 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.73 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.73 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.73 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.72 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.72 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.72 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.72 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.72 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.71 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.71 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.71 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.71 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.71 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.7 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.7 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.7 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.69 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.68 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.68 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.68 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 99.68 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.68 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.67 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.67 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.67 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.67 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.66 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.66 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.66 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.66 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.66 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.66 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.65 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.65 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.65 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 99.65 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.64 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.64 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.64 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.64 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.63 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.63 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.63 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.62 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.61 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.61 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.6 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.6 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.6 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.59 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.59 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.59 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.59 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.59 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.57 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.57 | |
| PTZ00099 | 176 | rab6; Provisional | 99.56 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.55 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 99.55 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.54 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.54 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.53 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.53 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.52 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.52 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.51 | |
| PRK13768 | 253 | GTPase; Provisional | 99.5 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.5 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.5 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.49 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.48 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.48 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.48 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.47 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.46 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.44 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.44 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.43 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.42 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.41 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.41 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.41 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.4 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.39 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.39 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.39 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.38 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.37 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.37 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.36 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.35 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.35 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.34 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.34 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.34 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.33 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.33 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.33 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.32 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.32 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.31 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.3 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.29 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.28 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.28 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.27 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.26 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.21 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.2 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 99.2 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.18 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.18 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.16 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.15 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.15 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 99.13 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.13 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.06 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.04 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 99.03 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.03 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.02 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 99.02 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.0 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.97 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.94 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 98.9 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.89 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 98.88 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.87 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.86 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.85 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.84 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.84 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.82 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.81 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.81 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.8 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.79 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 98.79 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.78 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.78 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.76 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.76 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.75 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.75 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.74 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.73 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.72 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.72 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.66 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 98.62 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.62 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.59 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.56 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.56 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.54 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.54 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.52 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.5 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.5 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.48 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.45 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.44 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.44 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.41 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 98.4 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.38 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.37 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.37 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.37 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.35 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.33 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.3 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.3 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.27 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 98.27 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 98.24 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.22 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.22 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.21 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.2 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.19 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 98.16 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.14 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.13 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 98.12 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.09 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 98.06 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.04 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.04 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 98.04 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.03 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.03 | |
| KOG2743 | 391 | consensus Cobalamin synthesis protein [Coenzyme tr | 98.03 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.02 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.98 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.96 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.95 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.92 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.89 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.89 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 97.85 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 97.8 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.8 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.79 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.79 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.77 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.77 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.74 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 97.73 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.68 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.67 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.66 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.64 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.6 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.55 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.53 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 97.52 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.51 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 97.5 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.5 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.47 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.44 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.4 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.38 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.36 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 97.32 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.2 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.15 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 97.11 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.11 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.06 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formatio | 97.06 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.06 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.0 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.0 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 96.87 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 96.81 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 96.58 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.53 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 96.38 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.37 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.35 | |
| KOG0446 | 657 | consensus Vacuolar sorting protein VPS1, dynamin, | 96.29 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 96.28 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 96.27 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 96.21 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptatio | 96.19 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 96.18 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 96.15 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 96.09 | |
| COG1341 | 398 | Predicted GTPase or GTP-binding protein [General f | 96.09 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 96.09 | |
| PF08433 | 270 | KTI12: Chromatin associated protein KTI12 ; InterP | 96.06 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 96.04 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provision | 96.01 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 95.99 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 95.91 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 95.91 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 95.9 | |
| TIGR01969 | 251 | minD_arch cell division ATPase MinD, archaeal. Thi | 95.88 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 95.87 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.86 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL an | 95.82 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 95.81 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 95.77 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 95.76 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 95.7 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 95.65 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 95.65 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 95.64 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 95.63 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 95.63 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 95.63 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 95.61 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 95.6 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 95.59 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 95.58 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 95.56 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 95.56 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 95.56 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 95.55 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 95.54 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 95.53 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 95.51 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 95.5 | |
| PRK08181 | 269 | transposase; Validated | 95.49 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 95.48 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 95.47 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 95.47 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 95.46 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 95.46 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 95.45 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 95.45 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 95.44 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 95.41 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 95.41 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 95.41 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 95.38 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 95.38 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 95.37 |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=303.01 Aligned_cols=229 Identities=41% Similarity=0.653 Sum_probs=211.5
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..+++.|+|+|.||||||||+|+++|.+.+++++.+.||+..+.+++..+..++.++||||+.. +.+.+...+.+.+..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~-pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHK-PKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCC-cchHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999955 478899999999999
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+..+|+++||+|++++....++++.+.++. .+.|+++++||+|...... +......+.....+..++++||++|.|
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 9999999999999999888888888888877 6789999999999988766 566777777778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEec-cceEEEeeec
Q 018949 271 VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHW-LIFVEFNAFL 343 (348)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~-~~~~~~~~~~ 343 (348)
++.|.+.+...+++++++||.+.+++.+.+|+++|++||+++..+++|+||+..|.++.|.++ .+-+++++..
T Consensus 160 ~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I 233 (298)
T COG1159 160 VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATI 233 (298)
T ss_pred HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999994 6777777643
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=281.16 Aligned_cols=221 Identities=38% Similarity=0.541 Sum_probs=186.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|+||||||||+|+|++.+...+++.++||+....++...++.++.+|||||+... ...+...+...+..++..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~-~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK-KHSLNRLMMKEARSAIGG 79 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC-cchHHHHHHHHHHHHHhh
Confidence 3799999999999999999999999889999999999888888777788999999998543 344555566677788899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++++|+|++...... ..+...+.. .+.|+++|+||+|+............+.......+++++||++|.|+++|+
T Consensus 80 aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 99999999998765443 455555555 678999999999998655554445555555555589999999999999999
Q ss_pred HHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEecc-ceEEEe
Q 018949 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWL-IFVEFN 340 (348)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~~-~~~~~~ 340 (348)
+++.+.++..+|.||.+..++.+.+++++|++||+++..+++|+||++.+.++.|..+. ..++|.
T Consensus 157 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~ 222 (270)
T TIGR00436 157 AFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIH 222 (270)
T ss_pred HHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999754 344444
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=285.87 Aligned_cols=225 Identities=32% Similarity=0.499 Sum_probs=189.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|.+|||||||+|+|++.++..+++.+++|+....+.+..++.++.+|||||+.+ .+..+...+.+.+..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~-~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE-PKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCC-CcccHHHHHHHHHHHH
Confidence 356699999999999999999999999988889999999888888888888999999999743 3455666666777777
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+..||++++|+|++.+.......+...++. .+.|.++|+||+|+.+. ........+.......+++++||++|.|++
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~ 205 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNID 205 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHH
Confidence 899999999999988777766666666555 56788999999999754 233344444444444689999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEecc-ceEEEee
Q 018949 273 DIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWL-IFVEFNA 341 (348)
Q Consensus 273 eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~~-~~~~~~~ 341 (348)
+|+++|.+.++.++|+||.+..++.+.+++++|++||+++..+++|+||++.|.++.|.++. ..++|++
T Consensus 206 eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~ 275 (339)
T PRK15494 206 GLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQ 275 (339)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999854 4455543
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=272.39 Aligned_cols=227 Identities=42% Similarity=0.656 Sum_probs=195.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+.+.|+++|.||||||||+|+|+|.+...+++.+.||+....++...++.++.++||||+.+. ...+...+...+...
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~-~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKP-KRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCc-hhHHHHHHHHHHHHH
Confidence 4778999999999999999999999999889999999999988888777789999999998543 344556666677778
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC-ChhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
+..+|++++|+|++++.......+...+.. .+.|+++|+||+|+. ...........+....+..+++++||++|.|+
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 899999999999988666666666666654 578999999999998 44556666666766666778999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEeccceEEEeeec
Q 018949 272 EDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWLIFVEFNAFL 343 (348)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~~~~~~~~~~~ 343 (348)
++|++++.+.++..++.||.+..++.+.++++.|++||+++..+++|+||++.|.++.|.++ ..++|++.+
T Consensus 160 ~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~-~~~~i~~~i 230 (292)
T PRK00089 160 DELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER-GLVRIEATI 230 (292)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC-CeEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999986 555565543
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=246.58 Aligned_cols=227 Identities=42% Similarity=0.681 Sum_probs=185.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh---hhhHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNV 189 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~l~~~~~~~~ 189 (348)
.+...|+++|.||||||||.|.++|.++++++....||++.+.+++..+..+++++||||++.... +.+...+.+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 467799999999999999999999999999999999999999999999999999999999976432 33444455677
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-----------------HHHHHHH
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-----------------KKLEWYE 252 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-----------------~~~~~~~ 252 (348)
+.++..||++++|+|+++........++..+... ..+|-|+|+||+|......+. +....+.
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 8889999999999999865544444444444443 678999999999987644221 0111111
Q ss_pred h------------cCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCC
Q 018949 253 K------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP 320 (348)
Q Consensus 253 ~------------~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip 320 (348)
. ..++..+|++||++|+|+++|.++|...++.++|.|+.+..++.+.++++.|.+|+++++.+++|+|
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVP 308 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVP 308 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccC
Confidence 1 1123468999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeEEEeccc-eEEEe
Q 018949 321 YACQVCNLTFQHWLI-FVEFN 340 (348)
Q Consensus 321 ~~~~~~~~~~~~~~~-~~~~~ 340 (348)
|++++.+..|+++.. -+.|.
T Consensus 309 Y~lq~~i~~w~e~~~g~l~I~ 329 (379)
T KOG1423|consen 309 YNLQVRILSWKERPAGVLFIQ 329 (379)
T ss_pred cceEEEEEEeeecCCcEEEEE
Confidence 999999999999644 44443
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=233.13 Aligned_cols=234 Identities=20% Similarity=0.202 Sum_probs=173.3
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++..+.+..++.+...+.++++++.+... ++ ++
T Consensus 120 GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~l---el-------------------------k~------------- 158 (390)
T PRK12298 120 GGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKL---EL-------------------------KL------------- 158 (390)
T ss_pred CCCCccchhhhccCccCCCcccCCCCCCceEEEEE---ee-------------------------ec-------------
Confidence 45667777788877777777766555555543222 10 00
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
-..|+|+|.||||||||+|+|++.+. .++++|+||+....+++...+ ..+.++||||+...... ...+...
T Consensus 159 -----iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~--~~~Lg~~ 230 (390)
T PRK12298 159 -----LADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE--GAGLGIR 230 (390)
T ss_pred -----cccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc--hhhHHHH
Confidence 11599999999999999999999886 579999999999999988764 46999999998653321 1112233
Q ss_pred HHhhccCccEEEEEecCCC---C-CchHHHHHHHhccccc---CCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC-CeE
Q 018949 189 VRSAGINADCIVVLVDACK---A-PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV-DEV 260 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~---~-~~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~i 260 (348)
+.+++.++|++++|+|++. . .......+.+.+.... .++|+++|+||+|+.....+......+....+. .++
T Consensus 231 ~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~V 310 (390)
T PRK12298 231 FLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPV 310 (390)
T ss_pred HHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCE
Confidence 4457899999999999872 1 2222233333333321 368999999999998766555555555444333 368
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHH
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF 312 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~ 312 (348)
+++||+++.|+++|++.|.+.++..+++||.+..++.+.+++++|++||++.
T Consensus 311 i~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 311 YLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred EEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999985
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-27 Score=224.17 Aligned_cols=211 Identities=27% Similarity=0.317 Sum_probs=160.9
Q ss_pred hhhhhccccCCCCcc-CCcCCccccccccCCCC-CCCCCCChhhhhhccccCCCCCCccEEEEEcCCCCChHHHHHHHhC
Q 018949 60 LWSNQREMDLDDGDE-MEFDDASSFLSLSEKPD-RNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 60 ~~~~~~e~~~d~~e~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
.....+|+.+||.|+ .+....+.+....+... ...+.+.....+... ....+|+|+|.||||||||+|+|++
T Consensus 166 ~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il------r~G~kvvIiG~PNvGKSSLLNaL~~ 239 (454)
T COG0486 166 ELLAQVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKIL------REGLKVVIIGRPNVGKSSLLNALLG 239 (454)
T ss_pred HHHHHheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hcCceEEEECCCCCcHHHHHHHHhc
Confidence 456788999999876 44443333333222211 112222222222222 1344899999999999999999999
Q ss_pred CceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHH
Q 018949 138 QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217 (348)
Q Consensus 138 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~ 217 (348)
.+.++|++.||||++.....++.+|+++.++||+|+. +..+.+++.+.++.+..+..||+++||+|++.+....+..+.
T Consensus 240 ~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR-et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~ 318 (454)
T COG0486 240 RDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR-ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALI 318 (454)
T ss_pred CCceEecCCCCCccceEEEEEEECCEEEEEEecCCcc-cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHH
Confidence 9999999999999999999999999999999999996 567889999999999999999999999999987655555555
Q ss_pred HhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 218 EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 218 ~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
. ... .++|+++|+||+|+......... ......+++.+||++|+|++.|.+.|.+.+...
T Consensus 319 ~-~~~--~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 319 E-LLP--KKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred H-hcc--cCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 5 222 67999999999999976553222 222233689999999999999999999988664
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=211.47 Aligned_cols=162 Identities=34% Similarity=0.489 Sum_probs=143.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+.|+|+|.||||||||.|+|++.+.+++++.||+|++.......+.+..+.++||+|+.....+.+...+.+++..++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999996555567888899999999999
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
||+++||+|+..+.+..++.+.+.++. .++|+|+|+||+|-...... ...+. ..++..++++||..|.|+.+|+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~~---~~efy-slG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEEL---AYEFY-SLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhhh---HHHHH-hcCCCCceEeehhhccCHHHHH
Confidence 999999999999999999999999986 78999999999998743321 12222 2455678999999999999999
Q ss_pred HHHHHhCC
Q 018949 276 DWILTKLP 283 (348)
Q Consensus 276 ~~i~~~l~ 283 (348)
+.+.+.++
T Consensus 158 d~v~~~l~ 165 (444)
T COG1160 158 DAVLELLP 165 (444)
T ss_pred HHHHhhcC
Confidence 99999985
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-25 Score=183.98 Aligned_cols=155 Identities=34% Similarity=0.426 Sum_probs=112.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.||||||||+|+|+|.+.. ++++|++|.....+.+...+..+.++|+||+..-...+........+.. ....
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~-v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK-VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce-ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 7999999999999999999999955 7999999999999999988899999999997554333333333222222 3689
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|+++.... ..+...+.+ .++|+++|+||+|......+.-....+.+..+. |++++||++++|+++|++
T Consensus 80 D~ii~VvDa~~l~r~--l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~-pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 80 DLIIVVVDATNLERN--LYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV-PVIPVSARTGEGIDELKD 154 (156)
T ss_dssp SEEEEEEEGGGHHHH--HHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTTTTBTHHHHHH
T ss_pred CEEEEECCCCCHHHH--HHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC-CEEEEEeCCCcCHHHHHh
Confidence 999999999863322 234444445 689999999999987544322123334444444 899999999999999998
Q ss_pred HH
Q 018949 277 WI 278 (348)
Q Consensus 277 ~i 278 (348)
.|
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 75
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=200.76 Aligned_cols=205 Identities=21% Similarity=0.253 Sum_probs=145.7
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++..+.+...+++...+.++++++.+... ++. +
T Consensus 119 gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~l---elk-------------------------~------------- 157 (335)
T PRK12299 119 GGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRL---ELK-------------------------L------------- 157 (335)
T ss_pred CCCCcCCchhhccccCCCCccccCCCCCcEEEEEE---EEc-------------------------c-------------
Confidence 45677778888888888888877777776653332 100 0
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
-..|+|+|.||||||||+|+|++.+.. ++++++||..+..+.+.. ++..+.+|||||+.+.... ...+...
T Consensus 158 -----~adVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~--~~gLg~~ 229 (335)
T PRK12299 158 -----LADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE--GAGLGHR 229 (335)
T ss_pred -----cCCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc--cccHHHH
Confidence 116999999999999999999998765 689999999999998876 5678999999998653321 1122344
Q ss_pred HHhhccCccEEEEEecCCCCC-chHHHHHHHhccccc---CCCCEEEEEeccCCCChhhHHH-HHHHHHhcCCCCeEEEe
Q 018949 189 VRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~v 263 (348)
++++++.++++++|+|+++.. ......|...+.... .++|+++|+||+|+........ .........+ .+++++
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~-~~i~~i 308 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALG-GPVFLI 308 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcC-CCEEEE
Confidence 566778999999999998643 222233333333221 4689999999999976543322 2222222222 479999
Q ss_pred cCCCCCCHHHHHHHHHHhCCC
Q 018949 264 SAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~ 284 (348)
||++++|+++|+++|.+.+..
T Consensus 309 SAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 309 SAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987754
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=194.99 Aligned_cols=168 Identities=25% Similarity=0.329 Sum_probs=140.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~~~~~ 191 (348)
...+|+|+|.||||||||+|+|+|....++++.+|||++.+...+..++..+.++||+|+.... ..+++..-...+..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4579999999999999999999999999999999999999999999999999999999985421 12233334456667
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh--hhHHHHH---HHHHhcCCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKL---EWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~---~~~~~~~~~~~i~~vSA~ 266 (348)
++..+|++++|+|++.+...++..+..+... .+.+++||+||+|+... ...+... ...-.+.++.|++++||+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~ 334 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISAL 334 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEec
Confidence 8899999999999999999999999998888 88999999999999875 2233333 333345567799999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 018949 267 YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+..|++.+.+...
T Consensus 335 ~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 335 TGQGLDKLFEAIKEIYE 351 (444)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 99999999999987654
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=204.53 Aligned_cols=204 Identities=21% Similarity=0.189 Sum_probs=147.5
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++.++.+...+++...+.++++++.+... |+.
T Consensus 120 GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~l-eLk----------------------------------------- 157 (500)
T PRK12296 120 GGRGGLGNAALASKARKAPGFALLGEPGEERDLVL-ELK----------------------------------------- 157 (500)
T ss_pred cCCCcCCCcccCCccCCCCccccCCCCCceEEEEE-Eec-----------------------------------------
Confidence 56788888999999999998888777777654333 111
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
-...|+|+|.||||||||+|+|++.+.. ++++|+||..+..+++...+..+.++||||+...... ...+...+
T Consensus 158 ----~~adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~--g~gLg~~f 230 (500)
T PRK12296 158 ----SVADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE--GKGLGLDF 230 (500)
T ss_pred ----ccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccch--hhHHHHHH
Confidence 0117999999999999999999998776 5889999999999999888889999999998643211 12223345
Q ss_pred HhhccCccEEEEEecCCCC------CchHH---HHHHHhccc--------ccCCCCEEEEEeccCCCChhhHHHHHH-HH
Q 018949 190 RSAGINADCIVVLVDACKA------PERID---EILEEGVGD--------HKDKLPILLVLNKKDLIKPGEIAKKLE-WY 251 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~------~~~~~---~~~~~~~~~--------~~~~~p~ivv~NK~Dl~~~~~~~~~~~-~~ 251 (348)
++++..||++|+|+|++.. ..... ..+..+... ...++|+|||+||+|++...+..+... .+
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l 310 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL 310 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH
Confidence 5677899999999999742 11221 122222210 014689999999999986554433322 23
Q ss_pred HhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 252 EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 252 ~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
... + .+++++||++++|+++|+.+|.+.+..
T Consensus 311 ~~~-g-~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 311 EAR-G-WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHc-C-CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 322 3 489999999999999999999987754
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=170.48 Aligned_cols=165 Identities=42% Similarity=0.621 Sum_probs=129.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|.+|+|||||+|++++.........+.+++..........+..+.+|||||+.... ......+.......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK-KKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch-HHHHHHHHHHHHHHHH
Confidence 458999999999999999999999887777777888887777777777889999999975432 2222334444556688
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC-ChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
.+|++++|+|+++........+...+.. .+.|+++|+||+|+. ....+......+....+..+++++|++++.|+++
T Consensus 82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 159 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDE 159 (168)
T ss_pred hCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHH
Confidence 9999999999998755555556555554 568999999999998 4555566666666666667899999999999999
Q ss_pred HHHHHHHhC
Q 018949 274 IRDWILTKL 282 (348)
Q Consensus 274 L~~~i~~~l 282 (348)
+++.|.+.+
T Consensus 160 l~~~l~~~~ 168 (168)
T cd04163 160 LLEEIVKYL 168 (168)
T ss_pred HHHHHHhhC
Confidence 999997653
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=170.10 Aligned_cols=157 Identities=35% Similarity=0.468 Sum_probs=120.7
Q ss_pred EEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccE
Q 018949 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (348)
Q Consensus 119 ~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~ 198 (348)
+++|.+|+|||||+|+|.+......+..+++|+..........+..+.+|||||+..... .+...+...+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCCE
Confidence 479999999999999999988666778888888877777777778999999999754322 2344444555666789999
Q ss_pred EEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHH
Q 018949 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278 (348)
Q Consensus 199 iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i 278 (348)
+++|+|+.++.......+...++. .+.|+++|+||+|+...... ...+.. .+..+++++||++|.|++++++++
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYS-LGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHh-cCCCCeEEEecccCCCHHHHHHHH
Confidence 999999987765555556666655 57999999999999876543 122222 334478999999999999999999
Q ss_pred HHhC
Q 018949 279 LTKL 282 (348)
Q Consensus 279 ~~~l 282 (348)
.+.+
T Consensus 154 ~~~~ 157 (157)
T cd01894 154 LELL 157 (157)
T ss_pred HhhC
Confidence 8753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=172.42 Aligned_cols=164 Identities=24% Similarity=0.364 Sum_probs=110.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|++|+|||||+|++++..+. +...+++|..........++..+.+|||||+.+....................
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 37999999999999999999998764 45567777777666666677899999999974311100000000111111234
Q ss_pred ccEEEEEecCCCCCc---hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~~---~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|+++... .....+...++....+.|+++|+||+|+........ ...+... ...+++++||++|.|++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEEL-EGEEVLKISTLTEEGVD 157 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhh-ccCceEEEEecccCCHH
Confidence 689999999986432 111223333333224799999999999987655443 2233332 34579999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
++++++.+.+
T Consensus 158 ~l~~~l~~~~ 167 (168)
T cd01897 158 EVKNKACELL 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-23 Score=201.51 Aligned_cols=157 Identities=31% Similarity=0.383 Sum_probs=123.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|++|||||||+|+|++.+...+++.+++|++.....+..++.++.+|||||+.+ ....+.......+..++.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~-~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE-TDDEVEKIGIERSREAIE 293 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC-CccHHHHHHHHHHHHHHH
Confidence 3589999999999999999999988777889999999988888888888999999999753 333344444555667789
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
.+|++++|+|++++.......++.. . .+.|+++|+||+|+....... .....+++++||++|.|+++|
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~l~~--~--~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEILEE--L--KDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHHHHh--c--CCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHH
Confidence 9999999999987664333322222 2 678999999999997644322 122347899999999999999
Q ss_pred HHHHHHhCCC
Q 018949 275 RDWILTKLPL 284 (348)
Q Consensus 275 ~~~i~~~l~~ 284 (348)
+++|.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999988754
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-23 Score=193.98 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=143.7
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++..+.+..++.+...+.++++++..... ++.
T Consensus 118 gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~l---elk--------------------------------------- 155 (329)
T TIGR02729 118 GGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRL---ELK--------------------------------------- 155 (329)
T ss_pred CCCCCCCcccccCccCCCCcccCCCCCCcEEEEEE---Eee---------------------------------------
Confidence 45667777788888888887766666665542222 100
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
--..|+|+|.||||||||+|+|.+.+.. +++++.||..+..+.+...+ ..+.+|||||+.+.... ...+...
T Consensus 156 ----~~adV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~--~~gLg~~ 228 (329)
T TIGR02729 156 ----LLADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE--GAGLGHR 228 (329)
T ss_pred ----ccccEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc--cccHHHH
Confidence 1116999999999999999999998765 68899999998888887765 88999999998643221 1112234
Q ss_pred HHhhccCccEEEEEecCCCC----CchHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEE
Q 018949 189 VRSAGINADCIVVLVDACKA----PERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~----~~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~ 261 (348)
+++++..||++++|+|+++. .......+.+.+... ..++|+++|+||+|+..........+.+....+ .+++
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~-~~vi 307 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG-KPVF 307 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC-CcEE
Confidence 55667899999999999864 111222233322221 146899999999999876555555555554444 4799
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
++||++++|+++|+++|.+.+
T Consensus 308 ~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 308 PISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEccCCcCHHHHHHHHHHHh
Confidence 999999999999999998765
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-23 Score=197.57 Aligned_cols=205 Identities=23% Similarity=0.263 Sum_probs=144.4
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++..+.+...+++...+.+.++++.+... |+. +
T Consensus 119 GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~l-elk---------------------------~------------- 157 (424)
T PRK12297 119 GGRGGRGNAHFATSTNQAPRIAENGEPGEERELRL-ELK---------------------------L------------- 157 (424)
T ss_pred CCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEE-eec---------------------------c-------------
Confidence 45677778888888888887777666666543322 100 1
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
-..|+++|.||||||||+|+|++.+.. ++++|+||..+..+.+... +..+.+|||||+...... ...+...
T Consensus 158 -----~adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~--~~gLg~~ 229 (424)
T PRK12297 158 -----LADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE--GVGLGHQ 229 (424)
T ss_pred -----cCcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc--cchHHHH
Confidence 116999999999999999999998866 5789999999988887766 688999999998653221 1223344
Q ss_pred HHhhccCccEEEEEecCCCC----CchHHHHHHHhccccc---CCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEE
Q 018949 189 VRSAGINADCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~----~~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~ 261 (348)
+++++.+|+++|+|+|++.. .......+...+.... .++|++||+||+|+....+ ....+....+ .+++
T Consensus 230 fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~~~l~-~~i~ 305 (424)
T PRK12297 230 FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE---NLEEFKEKLG-PKVF 305 (424)
T ss_pred HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH---HHHHHHHHhC-CcEE
Confidence 55667899999999999753 1122233333333321 4689999999999854322 2222333333 4799
Q ss_pred EecCCCCCCHHHHHHHHHHhCCCCCC
Q 018949 262 PVSAKYGHGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (348)
++||++++|+++|+++|.+.+...+.
T Consensus 306 ~iSA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 306 PISALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999988866543
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-23 Score=199.14 Aligned_cols=204 Identities=25% Similarity=0.290 Sum_probs=137.2
Q ss_pred hhhhhccccCCCCccCCcCCccccccccCCCC-CCCCCCChhhhhhccccCCCCCCccEEEEEcCCCCChHHHHHHHhCC
Q 018949 60 LWSNQREMDLDDGDEMEFDDASSFLSLSEKPD-RNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 60 ~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...+.+|+.+||.||.+.. .++........ ....++.......+ ....+|+++|++|||||||+|+|++.
T Consensus 156 ~~~a~iea~iDf~ee~~~~--~~~~~~l~~~~~~l~~ll~~~~~~~~-------~~g~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 156 QLLAQVEVNIDYEEDDDEQ--DSLNQLLLSIIAELKDILNSYKLEKL-------DDGFKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred HHHHHeeEECCcCCCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456889999998754322 22222111111 11112222211111 13458999999999999999999998
Q ss_pred ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHH
Q 018949 139 KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE 218 (348)
Q Consensus 139 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~ 218 (348)
....+++.+++|++.....+..++..+.+|||||+.+ ....+..........+++.+|++++|+|++++...... +..
T Consensus 227 ~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~-~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~ 304 (442)
T TIGR00450 227 DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE-HADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LII 304 (442)
T ss_pred CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc-chhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHH
Confidence 8777899999999998888888889999999999743 22333344445566788999999999999876644433 333
Q ss_pred hcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 219 GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 219 ~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+.. .++|+++|+||+|+... +.. .+....+ .+++.+||++ .|++++++.+.+.+.
T Consensus 305 ~~~~--~~~piIlV~NK~Dl~~~-~~~----~~~~~~~-~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 305 DLNK--SKKPFILVLNKIDLKIN-SLE----FFVSSKV-LNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred HHhh--CCCCEEEEEECccCCCc-chh----hhhhhcC-CceEEEEEec-CCHHHHHHHHHHHHH
Confidence 3333 57899999999999754 221 1222222 3689999998 588888877776553
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=175.32 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=130.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
....+|+++|.+|||||||+++++..++.. ..++.+.+..............+.+||||| +..+..+ ...
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~ 81 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--QEKFGGL-------RDG 81 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCC--chhhhhh-------hHH
Confidence 345599999999999999999988776532 223333333333333344557899999999 4444333 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+++.+|++|+|+|.++.. .....|+..+ .....+.|+++|+||+|+.......... .+....+ .++++|||++|.
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i-~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~-~~~~e~SAk~~~ 158 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKN-LQYYEISAKSNY 158 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHH-HHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcC-CEEEEcCCCCCC
Confidence 578999999999998754 3333333333 2223679999999999986432112222 2222233 478999999999
Q ss_pred CHHHHHHHHHHhCC--------CCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCC
Q 018949 270 GVEDIRDWILTKLP--------LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNE 318 (348)
Q Consensus 270 gi~eL~~~i~~~l~--------~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~e 318 (348)
|++++|.+|.+.+. ..++.++.+...+.+......+.++++....+..+
T Consensus 159 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (219)
T PLN03071 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDD 215 (219)
T ss_pred CHHHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999997764 33556666666777777777778888776655543
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=166.50 Aligned_cols=165 Identities=25% Similarity=0.294 Sum_probs=120.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|+|||||+|++++.........+++|.......+..++..+.+|||||+.+.. ...+...........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 348999999999999999999998766667778888777666666677789999999975421 111222222233455
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh--hhHHHHHHHHHhcCC---CCeEEEecCCC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTD---VDEVIPVSAKY 267 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~---~~~i~~vSA~~ 267 (348)
+..+|++++|+|++++.......+...... .+.|+++|+||+|+... .........+....+ ..+++++||++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT 159 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence 789999999999988765554445544444 57899999999999865 334444444444332 35899999999
Q ss_pred CCCHHHHHHHHHHh
Q 018949 268 GHGVEDIRDWILTK 281 (348)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (348)
+.|++++++++.+.
T Consensus 160 ~~~i~~~~~~l~~~ 173 (174)
T cd01895 160 GQGVDKLFDAIDEV 173 (174)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=170.76 Aligned_cols=162 Identities=24% Similarity=0.272 Sum_probs=111.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCe-eEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.|+++|.+|||||||+|+|.+... .++..+++|.....+.+..++. .+.+|||||+.+.... ...+...+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE--GKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc--cCCchHHHHHHHHh
Confidence 599999999999999999998765 3566677777766666666655 8999999997432111 01112233344568
Q ss_pred ccEEEEEecCCCC-C--chHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 196 ADCIVVLVDACKA-P--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 196 ad~iv~VvD~~~~-~--~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+|++++|+|+++. . .... .+.+.+... ..++|+++|+||+|+.+..........+.......+++++||+++.
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGE 157 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 9999999999876 2 2222 222222221 1468999999999997765554444443333223578999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 158 gi~~l~~~i~~~~ 170 (170)
T cd01898 158 GLDELLRKLAELL 170 (170)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998653
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-22 Score=192.17 Aligned_cols=168 Identities=26% Similarity=0.294 Sum_probs=131.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||+|+|++.....+++.+++|++.....+..++..+.+|||||+..... ..++.........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 44689999999999999999999998877889999999988777777778899999999754221 1233333345566
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC-ChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
++..+|++|+|+|++++....+..+...+.. .++|+++|+||+|+. +..........+... ....+++++||++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~ 328 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT 328 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCC
Confidence 7899999999999998887777767666655 679999999999998 433344444444332 2446899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|++++++++.+...
T Consensus 329 g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 329 GQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=195.68 Aligned_cols=162 Identities=30% Similarity=0.390 Sum_probs=128.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+|+|.+|||||||+|+|++.....+.+.+++|++.........+..+.+|||||+.. ....+...+...+..++..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~-~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP-DAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC-cchhHHHHHHHHHHHHHHh
Confidence 489999999999999999999988777889999999988888777888899999999742 2234555566667778899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
||++|+|+|++++.......+...++. .++|+++|+||+|+...... ..... . .+....++|||++|.|+++|+
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~~--~~~~~-~-~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEAD--AAALW-S-LGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccchh--hHHHH-h-cCCCCeEEEEcCCCCCcHHHH
Confidence 999999999998876666667777765 68999999999998653211 11111 1 233345799999999999999
Q ss_pred HHHHHhCCC
Q 018949 276 DWILTKLPL 284 (348)
Q Consensus 276 ~~i~~~l~~ 284 (348)
++|.+.++.
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999988865
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-22 Score=186.06 Aligned_cols=158 Identities=28% Similarity=0.326 Sum_probs=115.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
++|+++|++|||||||+|+|++.+. .+++.+++|.++....+.. ++..+.+|||||+.......+...+ ..+...+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEEVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH-HHHHHHHH
Confidence 5899999999999999999999884 4678889998887776665 5678999999997443223332333 33456688
Q ss_pred CccEEEEEecCCCCCchH-HHHHHHhccccc-CCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAPERI-DEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~-~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
.||++++|+|++++.... ...+...+...+ .+.|+++|+||+|+.+...+.. ... ...+++++||++|.|++
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~--~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEE--GYPEAVFVSAKTGEGLD 341 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHh--CCCCEEEEEccCCCCHH
Confidence 999999999998765332 222233333321 4789999999999976443321 111 12368999999999999
Q ss_pred HHHHHHHHh
Q 018949 273 DIRDWILTK 281 (348)
Q Consensus 273 eL~~~i~~~ 281 (348)
+|+++|.+.
T Consensus 342 eL~~~I~~~ 350 (351)
T TIGR03156 342 LLLEAIAER 350 (351)
T ss_pred HHHHHHHhh
Confidence 999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-22 Score=193.92 Aligned_cols=169 Identities=24% Similarity=0.233 Sum_probs=125.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHH--HHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM--KNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~--~~~~~ 191 (348)
...+|+++|.+|||||||+|+|++.....+++.+++|++.....+..++..+.+|||||+............. .....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4569999999999999999999999877788999999988877777778889999999974321111111111 12334
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|++++.......+...+.. .++|+|+|+||+|+............+. ......+++++||++|
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g 367 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTG 367 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCC
Confidence 5789999999999998876666555555554 6799999999999976432222222222 1224468999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|++++++.+.+.+..
T Consensus 368 ~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 368 RAVDKLVPALETALES 383 (472)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987753
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=191.44 Aligned_cols=161 Identities=36% Similarity=0.454 Sum_probs=133.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||+|+|++...+.+.+.+++|++.....+.+++..+.+|||||+.. ....+...+...+..++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~-~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE-DDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC-cchhHHHHHHHHHHHHHhhC
Confidence 48999999999999999999998878899999999988888888888999999999743 33445566667778889999
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|+..+....+..+..+++. .++|+++|+||+|+....... ..+. ..+..+++++||++|.|++++++
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~~---~~~~-~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAVA---AEFY-SLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccccH---HHHH-hcCCCCeEEEeCCcCCChHHHHH
Confidence 99999999998888777777777776 689999999999987643211 1122 34555789999999999999999
Q ss_pred HHHHhCCC
Q 018949 277 WILTKLPL 284 (348)
Q Consensus 277 ~i~~~l~~ 284 (348)
.+.+.++.
T Consensus 154 ~i~~~l~~ 161 (429)
T TIGR03594 154 AILELLPE 161 (429)
T ss_pred HHHHhcCc
Confidence 99998865
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=189.02 Aligned_cols=168 Identities=25% Similarity=0.319 Sum_probs=132.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (348)
...+|+++|++|+|||||+|++++.....+++.+++|++.....+..++..+.+|||||+..... ..++.........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 45699999999999999999999998877899999999988877777888899999999744221 1233333344556
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g 268 (348)
++..+|++|+|+|++.+...++..+...+.. .++|+++|+||+|+.+..........+.. .....+++++||++|
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~ 329 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTG 329 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 7889999999999999887777777776665 67999999999999865444444333333 234568999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|++++++.+.+...
T Consensus 330 ~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 330 QGVDKLLEAIDEAYE 344 (435)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887553
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=161.21 Aligned_cols=154 Identities=31% Similarity=0.445 Sum_probs=118.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|+|||||+|++.+.........+++|.......+...+..+.+|||||+.+.. ..+...........+..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE-DEIEKIGIERAREAIEEA 81 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc-chHHHHHHHHHHHHHhhC
Confidence 7999999999999999999998877677888888887776777777889999999975432 223333334455667899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|++............. . .+.|+++|+||+|+...... .......+++++||+++.|++++++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~--~--~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL--P--ADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh--h--cCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHH
Confidence 99999999997665444333322 2 67999999999999875543 1222345899999999999999999
Q ss_pred HHHHhC
Q 018949 277 WILTKL 282 (348)
Q Consensus 277 ~i~~~l 282 (348)
+|.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 998754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=162.11 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=102.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee--cCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.|+++|.+|||||||+|+|.+...... ...+++|.......+... +..+.+|||||+ ..+ ...+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~--~~~-------~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH--EKF-------IKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh--HHH-------HHHHHhhh
Confidence 589999999999999999997542211 223455655544444444 678999999994 222 23344557
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhH----HHHHHHHHhc-CCCCeEEEecCCCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKF-TDVDEVIPVSAKYG 268 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~~~~~~~~-~~~~~i~~vSA~~g 268 (348)
..+|++++|+|++++...........+... ...|+++|+||+|+...... .+....+... ....+++++||++|
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG 151 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence 899999999999875533333333333331 22499999999999865322 2222333321 12358999999999
Q ss_pred CCHHHHHHHHHH
Q 018949 269 HGVEDIRDWILT 280 (348)
Q Consensus 269 ~gi~eL~~~i~~ 280 (348)
.|++++++.+.+
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 999999998864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=160.11 Aligned_cols=168 Identities=26% Similarity=0.350 Sum_probs=129.5
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh-hhHHH---H
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSM---M 185 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~l~~~---~ 185 (348)
|....+.|+++|.+|||||||||+|++.+ .+.++.+||.|+......+... +.++|.||++-.... ..... +
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 44455689999999999999999999966 5778999999999887666544 899999998653211 12222 2
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC---CCCe--E
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT---DVDE--V 260 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~--i 260 (348)
...++..-....++++++|+.+++...+..+.+++.. .++|++||+||+|..+..+.......+.... ..+. +
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 3333333345788999999999999999999999988 8999999999999998777655555555322 2222 7
Q ss_pred EEecCCCCCCHHHHHHHHHHhCC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+.+|+.++.|+++|...|.+.+.
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhh
Confidence 88999999999999999988764
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=168.07 Aligned_cols=165 Identities=21% Similarity=0.193 Sum_probs=109.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE-EeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~-~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||++++.+..+.. ...+.++. .... ..+......+.+||||| +..+..+ ...++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~~ 71 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAG--QERFRSV-------THAYY 71 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEEEEEECCEEEEEEEEeCCC--cHHHHHh-------hHHHc
Confidence 79999999999999999999887642 22222222 2222 22333456899999999 4333322 23457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
..+|++|+|+|+++.. .....++.........+.|+++|+||+|+...... ......+....+ .+++++||++|.|
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~ 150 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-VPFMETSAKTGLN 150 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 8899999999998654 22333333332222247899999999999643221 112223333333 4899999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCc
Q 018949 271 VEDIRDWILTKLPLGPAYYPKD 292 (348)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~ 292 (348)
+++++.+|.+.+....+.++.+
T Consensus 151 v~~l~~~l~~~~~~~~~~~~~~ 172 (191)
T cd04112 151 VELAFTAVAKELKHRKYEQPDE 172 (191)
T ss_pred HHHHHHHHHHHHHHhccccCCC
Confidence 9999999999887765554444
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-21 Score=160.91 Aligned_cols=154 Identities=20% Similarity=0.236 Sum_probs=107.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|||||||++++++.++.. ...+.++.+.....+..+ ...+.+|||||. ..+.. ....++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--~~~~~-------~~~~~~~ 71 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--ERFRS-------LIPSYIR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhc
Confidence 79999999999999999999988753 445555555544444433 356899999993 33322 2344578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.+++. .....++.........+.|+++|+||+|+..... ..+.........+ .+++++||++|.|+
T Consensus 72 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 150 (161)
T cd01861 72 DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAGHNV 150 (161)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCCCCH
Confidence 999999999998653 4444444444444324699999999999954322 2222233333333 57999999999999
Q ss_pred HHHHHHHHHh
Q 018949 272 EDIRDWILTK 281 (348)
Q Consensus 272 ~eL~~~i~~~ 281 (348)
++++++|.+.
T Consensus 151 ~~l~~~i~~~ 160 (161)
T cd01861 151 KELFRKIASA 160 (161)
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-21 Score=161.54 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=104.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|+|||||++++.+..+..... +..+.......+..+ ...+.+|||||. ..+.. ....+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~-------~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQ--ERFRT-------ITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHH
Confidence 3589999999999999999998876542211 111112222222223 367899999993 33222 23445
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.+|++++|+|+++.. .....++.........+.|+++|+||+|+....+. ......+.+..+...++++||++|.
T Consensus 73 ~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (165)
T cd01864 73 YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQ 152 (165)
T ss_pred hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCC
Confidence 78999999999998754 33333443333322357899999999999754321 1223344444555578999999999
Q ss_pred CHHHHHHHHHHh
Q 018949 270 GVEDIRDWILTK 281 (348)
Q Consensus 270 gi~eL~~~i~~~ 281 (348)
|++++++.+.+.
T Consensus 153 ~v~~~~~~l~~~ 164 (165)
T cd01864 153 NVEEAFLLMATE 164 (165)
T ss_pred CHHHHHHHHHHh
Confidence 999999999865
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-22 Score=186.12 Aligned_cols=168 Identities=29% Similarity=0.334 Sum_probs=130.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+.|+|+|+||||||||+|+|......+|++.+|||++.+...++.+|+++.|+||+|+.+...........+++...+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999988777888889999999999
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhccc----c------cCCCCEEEEEeccCCCCh-hhHHH----HHHHHHhcCCCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGD----H------KDKLPILLVLNKKDLIKP-GEIAK----KLEWYEKFTDVD 258 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~----~------~~~~p~ivv~NK~Dl~~~-~~~~~----~~~~~~~~~~~~ 258 (348)
..+|+|++|+|+.......+..+.+.+.. . ....|++++.||+|+... .+... +... .-.....
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~ 425 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFP 425 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccc
Confidence 99999999999954442222222222211 1 134789999999999865 22111 1111 1111222
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhC
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+.++|+++++|+.+|..++.+.+
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHH
Confidence 445699999999999999988754
|
|
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-21 Score=160.68 Aligned_cols=154 Identities=21% Similarity=0.195 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+.++. ....+++....... +......+.+|||||. ..+..+ ...++.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~~~ 71 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQYMR 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCC--cchHHH-------HHHHHh
Confidence 7999999999999999999987764 22333333322222 3333456889999994 333333 234577
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+............+....+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 150 (162)
T cd04138 72 TGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG-IPYIETSAKTRQGV 150 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC-CeEEEecCCCCCCH
Confidence 899999999997643 33333333333221 157899999999999753322222222322233 37999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++++++.+.+
T Consensus 151 ~~l~~~l~~~~ 161 (162)
T cd04138 151 EEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-21 Score=166.93 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=105.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.|+++|..|||||||++++....+... ..+..+.......+. ...+.+.+|||+| +..+..+ +..+++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~-~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG--qe~~~~l-------~~~y~~ 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEA-CKSGVGVDFKIKTVELRGKKIRLQIWDTAG--QERFNSI-------TSAYYR 71 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCc-CCCcceeEEEEEEEEECCEEEEEEEEeCCC--chhhHHH-------HHHHhc
Confidence 589999999999999999998877421 112222233222233 3347899999999 4444433 345588
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++|+|+|.++.. +....|+. .++. ...+.|+++|+||+|+....++. .....+........+++|||++|.|
T Consensus 72 ~ad~iIlVfDvtd~~Sf~~l~~w~~-~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~g 150 (202)
T cd04120 72 SAKGIILVYDITKKETFDDLPKWMK-MIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFN 150 (202)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHH-HHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 999999999998754 33333333 3332 22579999999999997544332 2223333332234799999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
++++|.++.+.+.
T Consensus 151 V~e~F~~l~~~~~ 163 (202)
T cd04120 151 VDEIFLKLVDDIL 163 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-21 Score=163.44 Aligned_cols=154 Identities=20% Similarity=0.282 Sum_probs=104.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||++++.+..+....++.+. ....+..++..+.+|||||. ..+.. .+..++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~ 79 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGF----QIKTLEYEGYKLNIWDVGGQ--KTLRP-------YWRNYF 79 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCEEEEEEECCCC--HHHHH-------HHHHHh
Confidence 456899999999999999999998765433332221 12223345688999999994 33222 234557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|+++.. .....++...+.. ...+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 8999999999998753 3333344444322 1257999999999999754333332222221 12335899999999
Q ss_pred CCCHHHHHHHHHH
Q 018949 268 GHGVEDIRDWILT 280 (348)
Q Consensus 268 g~gi~eL~~~i~~ 280 (348)
|.|++++++++.+
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=163.29 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=102.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|.+|||||||++++....+....++.+.+ . ..+......+.+|||||. ..+..+ ...++.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~---~-~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~ 75 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN---V-ETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHYYT 75 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccccCCcccc---e-EEEEECCEEEEEEECCCC--HHHHHH-------HHHHhc
Confidence 458999999999999999999876654222222221 1 223346788999999994 333322 334578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH--h-cCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--K-FTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~-~~~~~~i~~vSA~~g 268 (348)
.+|++|+|+|+++.. .....++...+... ..+.|+++|+||+|+......++....+. . .....+++++||++|
T Consensus 76 ~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 76 GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred cCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 999999999998753 44445555554431 25689999999999864322222222221 1 112236899999999
Q ss_pred CCHHHHHHHHHH
Q 018949 269 HGVEDIRDWILT 280 (348)
Q Consensus 269 ~gi~eL~~~i~~ 280 (348)
.|+++++++|.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999865
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=162.12 Aligned_cols=163 Identities=23% Similarity=0.271 Sum_probs=121.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..||+++|..+||||||+-++...++... .++.+..-.+....+......+.+|||+| +++++++.. -|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG--QERy~slap-------MY 74 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG--QERYHSLAP-------MY 74 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCC--ccccccccc-------ce
Confidence 455899999999999999999999887642 34444444444444444558899999999 677777744 45
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+++|+++|+|+|.++.. .....|+.++-+...+++-+.+|+||+|+...+++ .+....+....+. .++++||++|.
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gl-l~~ETSAKTg~ 153 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGL-LFFETSAKTGE 153 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCC-EEEEEeccccc
Confidence 89999999999998754 55666776666654455666779999999874433 2233444444554 79999999999
Q ss_pred CHHHHHHHHHHhCCCCC
Q 018949 270 GVEDIRDWILTKLPLGP 286 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~ 286 (348)
|++++|..|.+.++...
T Consensus 154 Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 154 NVNEIFQAIAEKLPCSD 170 (200)
T ss_pred CHHHHHHHHHHhccCcc
Confidence 99999999999997643
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-21 Score=163.81 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+..+. ..+.+|........ +....+.+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ--EDYDRLR-------PLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCc--cchhhhh-------hhhc
Confidence 37999999999999999999988763 33344443333222 2333477899999994 4433332 2357
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVD 258 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~ 258 (348)
..+|++|+|+|.++.. ......|...++....+.|+++|+||+|+....+.. +....+....+..
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~ 150 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence 8999999999998754 233333444443333579999999999986543211 1122233334446
Q ss_pred eEEEecCCCCCCHHHHHHHHHHh
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
+++++||++|.|++++|+.+.+.
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998874
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=196.53 Aligned_cols=162 Identities=31% Similarity=0.387 Sum_probs=131.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+|+|.+|||||||+|+|++.+...+.+.+++|++........++..+.+|||||+.. ....+...+...+..++..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA-DVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC-CCccHHHHHHHHHHHHHHh
Confidence 489999999999999999999998888899999999988888777888999999999742 2234555666777788899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
||++|||+|++.+....+..+...++. .++|+++|+||+|+...... . ..+.. .+...++++||++|.|+++|+
T Consensus 355 aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~--~-~~~~~-lg~~~~~~iSA~~g~GI~eLl 428 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYD--A-AEFWK-LGLGEPYPISAMHGRGVGDLL 428 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhh--H-HHHHH-cCCCCeEEEECCCCCCchHHH
Confidence 999999999998887777777777766 78999999999998653221 1 12211 233356899999999999999
Q ss_pred HHHHHhCCC
Q 018949 276 DWILTKLPL 284 (348)
Q Consensus 276 ~~i~~~l~~ 284 (348)
++|.+.++.
T Consensus 429 ~~i~~~l~~ 437 (712)
T PRK09518 429 DEALDSLKV 437 (712)
T ss_pred HHHHHhccc
Confidence 999998865
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-21 Score=196.23 Aligned_cols=169 Identities=22% Similarity=0.239 Sum_probs=127.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHH--HHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM--KNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~--~~~~~ 191 (348)
...+|+++|.+|||||||+|+|++.+...++..++||++.....+..++..+.+|||||+...........+. .....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3469999999999999999999999877778999999998887777788889999999974322111111111 22345
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g 268 (348)
+++.+|++++|+|++.+....+..+...+.. .++|+++|+||+|+.+..........+.. .....+++++||++|
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg 606 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKVMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTG 606 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence 6789999999999998887766656555544 67999999999999865433323222322 234568899999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++|++.+.+.+..
T Consensus 607 ~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 607 WHTNRLAPAMQEALES 622 (712)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=167.11 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=106.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+... ..|.++....... ++.....+.+|||||+.... .............++.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhHHHHHHHhhhc
Confidence 799999999999999999998876532 2333322222222 33334678999999964321 1122222233445578
Q ss_pred CccEEEEEecCCCCCc--hHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAPE--RIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
.+|++|+|+|++++.. ....++..+.... ..++|+++|+||+|+...... ......+......+++++|||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 9999999999987542 2222222222211 257999999999999653221 112222222223458999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|++++|+.+.+.+..
T Consensus 160 ~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 160 WHILLLFKELLISATT 175 (198)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999976643
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=165.24 Aligned_cols=161 Identities=26% Similarity=0.348 Sum_probs=105.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh------hhhhHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMK 187 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~l~~~~~~ 187 (348)
+..+|+++|.+|||||||+|++.+..+. ++..+++|.......+ . .+.+|||||+.... ....+.....
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDW--G--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEee--c--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 4458999999999999999999998754 5667777776543322 2 58999999963211 1112221212
Q ss_pred HHHhhccCccEEEEEecCCCCCc-----------hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 188 NVRSAGINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~-----------~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
.+......++++++|+|++.... ..+..+...+.. .++|+++|+||+|+.... ......+....+
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~ 158 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR--DEVLDEIAERLG 158 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH--HHHHHHHHHHhc
Confidence 22234567899999999864321 122333444444 579999999999997543 112222222222
Q ss_pred C--------CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 257 V--------DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 257 ~--------~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
. .+++++||++| |+++++++|.+.+..
T Consensus 159 ~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 159 LYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 1 25899999999 999999999987754
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-21 Score=162.59 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=107.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++.+..+. . +.. |.......+...+..+.+|||||.. .+. ..+..++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~-~~~-T~~~~~~~~~~~~~~i~l~Dt~G~~--~~~-------~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q-PIP-TIGFNVETVEYKNLKFTIWDVGGKH--KLR-------PLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C-cCC-cCceeEEEEEECCEEEEEEECCCCh--hcc-------hHHHHHhccC
Confidence 5899999999999999999987543 2 222 2222223455667899999999952 222 2233457899
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc----CCCCeEEEecCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----TDVDEVIPVSAKYGH 269 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~i~~vSA~~g~ 269 (348)
|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.......+....+... .....++++||++|.
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 9999999998753 44445555555432 1458999999999997543333322222111 112367899999999
Q ss_pred CHHHHHHHHHHhCCCCCC
Q 018949 270 GVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~~ 287 (348)
|++++|++|.+.+...++
T Consensus 148 gv~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 148 GLYEGLDWLSRQLVAAGV 165 (169)
T ss_pred CHHHHHHHHHHHHhhccc
Confidence 999999999988776544
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-21 Score=163.07 Aligned_cols=157 Identities=25% Similarity=0.306 Sum_probs=107.1
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh-hhHHHH---
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMM--- 185 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~l~~~~--- 185 (348)
+..+.++|+++|.+|+|||||+|++.+.. ...+++.+++|.+......+ ..+.+|||||+...... .....+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 44566799999999999999999999986 44456778888765543332 26999999997432111 001111
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHH----HhcCCCCeEE
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY----EKFTDVDEVI 261 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~i~ 261 (348)
...+......+|++++|+|++.+.......+...+.. .++|+++|+||+|+....+.......+ .......+++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~ 168 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQ 168 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceE
Confidence 1222222345789999999988776666666666655 679999999999998765443333333 3322234799
Q ss_pred EecCCCCCCHH
Q 018949 262 PVSAKYGHGVE 272 (348)
Q Consensus 262 ~vSA~~g~gi~ 272 (348)
++||++|+|++
T Consensus 169 ~~Sa~~g~gi~ 179 (179)
T TIGR03598 169 LFSSLKKTGID 179 (179)
T ss_pred EEECCCCCCCC
Confidence 99999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-21 Score=161.14 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+..+. ....+|+.......+ ......+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT--EQFTAMR-------DLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--cccchHH-------HHHh
Confidence 37999999999999999999987754 233334333322222 333466889999994 3444332 2346
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.+|++++|+|.++.. .....++....... ..+.|+++|+||+|+...... ......+....+ .+++++||++|.
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKSKI 149 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 8899999999997643 22333333222211 257899999999999653322 112223333334 589999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++++.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998754
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=160.73 Aligned_cols=156 Identities=26% Similarity=0.322 Sum_probs=109.6
Q ss_pred EEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEE
Q 018949 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~i 199 (348)
++|.+|||||||+|++.+... .+...+++|.......+..++..+.+|||||+........+..+....... ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 589999999999999999864 356778888887766677777889999999964422222222222222222 599999
Q ss_pred EEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHH
Q 018949 200 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279 (348)
Q Consensus 200 v~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~ 279 (348)
++|+|+++.... .. +...+.. .++|+++|+||+|+.+..........+....+ .+++++||++|.|++++++++.
T Consensus 79 i~v~d~~~~~~~-~~-~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERN-LY-LTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLG-VPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhH-HH-HHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHH
Confidence 999999864332 22 2223333 57899999999999765433332333433333 3799999999999999999998
Q ss_pred HhC
Q 018949 280 TKL 282 (348)
Q Consensus 280 ~~l 282 (348)
+.+
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 754
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=162.03 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|++|||||||++++.+.++... .++.+.+.......+......+.+|||||. ..+..+ ...+++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~--~~~~~~-------~~~~~~ 74 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--ERFRTI-------TTAYYR 74 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCch--HHHHHH-------HHHHhC
Confidence 5899999999999999999998876432 122222222122223334467899999993 333322 234578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|+++.. .....++....+....+.|+++|+||+|+...... .+....+....+ .+++++||++|.|+
T Consensus 75 ~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 153 (167)
T cd01867 75 GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYG-IKFLETSAKANINV 153 (167)
T ss_pred CCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999997654 22333333332222257899999999999753321 111222222223 37999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
++++.++.+.+
T Consensus 154 ~~~~~~i~~~~ 164 (167)
T cd01867 154 EEAFFTLAKDI 164 (167)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-22 Score=179.10 Aligned_cols=206 Identities=18% Similarity=0.163 Sum_probs=155.4
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++.++++..++++..++.++++++.+... |+. ++
T Consensus 120 GG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~L-ELK---------------------------ll------------ 159 (369)
T COG0536 120 GGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRL-ELK---------------------------LL------------ 159 (369)
T ss_pred CCCCCccchhhcCcccCCcccCCCCCCCceEEEEE-EEe---------------------------ee------------
Confidence 66788899999999999999998888888765443 111 11
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
..|++||.||+|||||+++++..+.. +.++|.||..+..+++.. .+..|++.|.||+++...... .+-..
T Consensus 160 ------ADVGLVG~PNaGKSTlls~vS~AkPK-IadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~--GLG~~ 230 (369)
T COG0536 160 ------ADVGLVGLPNAGKSTLLSAVSAAKPK-IADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGV--GLGLR 230 (369)
T ss_pred ------cccccccCCCCcHHHHHHHHhhcCCc-ccCCccccccCcccEEEecCCCcEEEecCcccccccccCC--CccHH
Confidence 15999999999999999999999987 689999999999998885 566799999999988654322 22234
Q ss_pred HHhhccCccEEEEEecCCCCC----chHHHHHHHhcccc---cCCCCEEEEEeccCCCC-hhhHHHHHHHHHhcCCCCeE
Q 018949 189 VRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDH---KDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEV 260 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~i 260 (348)
+++++++|.++++|+|.+... ......+...+... ..++|.+||+||+|++. .++.+.....+....+....
T Consensus 231 FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~ 310 (369)
T COG0536 231 FLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVF 310 (369)
T ss_pred HHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcc
Confidence 567789999999999997433 23333344333332 16799999999999654 45556566666655554433
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+++||.+++|+++|...+.+.+..
T Consensus 311 ~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 311 YLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred eeeehhcccCHHHHHHHHHHHHHH
Confidence 449999999999999999887755
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-21 Score=161.96 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|||||||++++.+..+.. ...+++.... ...+......+.+|||||. ..+..+. ..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~-------~~~~~ 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ--EEFSAMR-------DQYMR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCc--ccchHHH-------HHHHh
Confidence 79999999999999999999877642 2223333222 2223344567889999994 3333332 23467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++++|+|+++.. .....+.....+.. ..+.|+++|+||+|+...... ......+....+ .+++++||++|.|
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 149 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG-CPFLETSAKERVN 149 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC-CEEEEeecCCCCC
Confidence 899999999998643 22223322222211 147899999999999753321 112222333333 5899999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
+++++++|.+.+.
T Consensus 150 i~~l~~~l~~~~~ 162 (164)
T smart00173 150 VDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-21 Score=165.52 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=108.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|..|||||||+.++....+.. .+..|...... ..++...+.+.+||||| ++.+..+. ..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~e~~~~l~-------~~~ 71 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAG--QEEYDRLR-------TLS 71 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCC--chhhhhhh-------hhh
Confidence 3489999999999999999999877642 22222222222 12344457899999999 55554443 345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-------------HHHHHHHHhcCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTDV 257 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~~~~~~~~~~~ 257 (348)
++.+|++|+|+|.++.. +.....|...+.....+.|+++|+||+|+.+.... .+....+....+.
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 151 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA 151 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 78999999999998754 33332233333322367999999999999653211 1122333344454
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.+++++||++|.|++++|.++.+.+..
T Consensus 152 ~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 152 VKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 589999999999999999999987754
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-21 Score=163.69 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=107.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.++||||||+.++....+.. .+..|...... ..++...+.+.+|||+| +..+..+.. .+++
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~--~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G--~~~~~~~~~-------~~~~ 71 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVSVDGNTVNLGLWDTAG--QEDYNRLRP-------LSYR 71 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCCcceeeeEEEEEECCEEEEEEEEECCC--Cccccccch-------hhcC
Confidence 79999999999999999999887742 22223222222 22334457899999999 445544432 3578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChh-----------hHHHHHHHHHhcCCCCeEE
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-----------EIAKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~i~ 261 (348)
.+|++|+|+|.++.. ......|...++....+.|+++|+||+|+.+.. ...+....+....+..+++
T Consensus 72 ~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 151 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEE
Confidence 999999999998755 333222333333333679999999999996432 1122334444445554799
Q ss_pred EecCCCCCCHHHHHHHHHHhCC
Q 018949 262 PVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+|||++|.|++++|+.+.+.+.
T Consensus 152 E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred ECCCCcccCHHHHHHHHHHHHh
Confidence 9999999999999999998663
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=160.01 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|+|||||++++++..+. ....+++...... .+......+.+|||||.. .+..+ ...++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE--EFSAM-------REQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCCc--chhHH-------HHHHH
Confidence 48999999999999999999987653 3444444433332 233334678999999943 33332 23446
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++++|+|+++.. .....++....+.. ..+.|+++|+||+|+....... .....+....+ .+++++||++|.
T Consensus 72 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04145 72 RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLK-IPYIETSAKDRL 150 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcC-CcEEEeeCCCCC
Confidence 7899999999998754 22333333332211 2578999999999997543221 12223333334 378999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++.|.+.+
T Consensus 151 ~i~~l~~~l~~~~ 163 (164)
T cd04145 151 NVDKAFHDLVRVI 163 (164)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998754
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=165.24 Aligned_cols=160 Identities=28% Similarity=0.353 Sum_probs=108.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
++|+++|++|||||||+|++++.... +...+.+|.......+...+ ..+.+|||||+.+.........+ ......+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~~~~ 119 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAF-RSTLEEVA 119 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHH-HHHHHHHh
Confidence 48999999999999999999998753 34455556555544444433 38999999997543222222222 22334467
Q ss_pred CccEEEEEecCCCCCchH-HHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAPERI-DEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~-~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
.+|++++|+|++++.... ...+...+... ..+.|+++|+||+|+....... ... .....+++++||++|.|++
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~--~~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERL--EAGRPDAVFISAKTGEGLD 194 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHh--hcCCCceEEEEcCCCCCHH
Confidence 899999999998765332 22233333322 1468999999999998755433 111 2234579999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
+++++|.+.+
T Consensus 195 ~l~~~L~~~~ 204 (204)
T cd01878 195 ELLEAIEELL 204 (204)
T ss_pred HHHHHHHhhC
Confidence 9999998653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=159.15 Aligned_cols=156 Identities=22% Similarity=0.208 Sum_probs=105.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|++|+|||||+|++.+.++.. ..++.+.+.......+......+.+||||| +..+... ...+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G--~~~~~~~-------~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAG--QERYRSL-------APMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCc--hHHHHHH-------HHHHhc
Confidence 379999999999999999999988653 223333333333334445567899999999 3333222 234578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++++|+|+++.. .....++.........+.|+++|+||+|+.... ....... +....+ .+++++||++|.|
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~-~~~~~~-~~~~~~Sa~~~~~ 150 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQE-YADENG-LLFFETSAKTGEN 150 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHH-HHHHcC-CEEEEEECCCCCC
Confidence 899999999998654 333333333333222578999999999987432 1222222 222333 5799999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+.++++++.+.+
T Consensus 151 v~~l~~~l~~~l 162 (163)
T cd01860 151 VNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-21 Score=161.68 Aligned_cols=155 Identities=22% Similarity=0.287 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee---eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|++|+|||||++++.+.... .......+|.......+..++..+.+|||||+. .+. ..+..++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE--SLR-------SLWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh--hhH-------HHHHHHh
Confidence 4899999999999999999875321 011122333333334455567899999999953 222 2233457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---C--CCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---T--DVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~--~~~~i~~vSA 265 (348)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.......+....+... . ...+++++||
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 8999999999997643 22223333333321 2579999999999987654333333333221 1 2247999999
Q ss_pred CCCCCHHHHHHHHHH
Q 018949 266 KYGHGVEDIRDWILT 280 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~ 280 (348)
++|.|+++++++|.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999875
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-21 Score=160.88 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=99.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCc-eEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||++++++..+... ..+.. ...............+.+|||||. ..+..+. ..++..
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~~~ 72 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSKNICTLQITDTTGS--HQFPAMQ-------RLSISK 72 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECCEEEEEEEEECCCC--CcchHHH-------HHHhhc
Confidence 799999999999999999998876421 11111 111112223344577999999995 3333322 234678
Q ss_pred ccEEEEEecCCCCCc--hHHHHHHHhccc----ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 196 ADCIVVLVDACKAPE--RIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 196 ad~iv~VvD~~~~~~--~~~~~~~~~~~~----~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+|++|+|+|.++... ....++ ..++. ...+.|+++|+||+|+....++. .....+....+ .++++|||++|
T Consensus 73 ~~~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SA~~g 150 (165)
T cd04140 73 GHAFILVYSVTSKQSLEELKPIY-ELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWN-CAFMETSAKTN 150 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHH-HHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhC-CcEEEeecCCC
Confidence 999999999987552 223322 22222 11578999999999997533321 11222222223 47899999999
Q ss_pred CCHHHHHHHHHHh
Q 018949 269 HGVEDIRDWILTK 281 (348)
Q Consensus 269 ~gi~eL~~~i~~~ 281 (348)
.|+++++++|.++
T Consensus 151 ~~v~~~f~~l~~~ 163 (165)
T cd04140 151 HNVQELFQELLNL 163 (165)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999864
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-21 Score=160.94 Aligned_cols=155 Identities=13% Similarity=0.172 Sum_probs=102.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE-EeE-EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRI-LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+.++... ..+..+. ... ....+.....+.+|||||. ..+..+ ...+++
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--~~~~~~-------~~~~~~ 72 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--ERYRTI-------TTAYYR 72 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHcc
Confidence 799999999999999999999886422 1121111 111 1222334477999999994 333322 345578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. .....|+.........+.|+++|+||+|+.+.... .+....+....+. +++++||++|.|+
T Consensus 73 ~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv 151 (165)
T cd01865 73 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASAKENINV 151 (165)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEECCCCCCH
Confidence 999999999997643 22333333332222246899999999999754321 1222233333343 7999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++++++.+.+
T Consensus 152 ~~l~~~l~~~~ 162 (165)
T cd01865 152 KQVFERLVDII 162 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=157.70 Aligned_cols=163 Identities=22% Similarity=0.226 Sum_probs=121.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|..+|||||||++++..++.. +-.+....+... ..+....+++++|||+| |+++.++ +.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAG--QERFrsl-------ip 89 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--QERFRSL-------IP 89 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcc-cccceeeeEEEEEEEEEcCcEEEEEEEeccc--HHHHhhh-------hh
Confidence 455699999999999999999999888752 112222223222 23445567899999999 7777665 55
Q ss_pred hhccCccEEEEEecCCCC--CchHHHHHHHhcccccCC-CCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~--~~~~~~~~~~~~~~~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.|++++.++|+|+|.++. ++...+|+....++.+.+ +-+++|+||.||.+.++............-..-++++||+.
T Consensus 90 sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~ 169 (221)
T KOG0094|consen 90 SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKA 169 (221)
T ss_pred hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccC
Confidence 779999999999999864 477778888888776553 56778999999998876644433333322233789999999
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 018949 268 GHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~~ 285 (348)
|.||..||..|...+++.
T Consensus 170 g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 170 GENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCCHHHHHHHHHHhccCc
Confidence 999999999999988764
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-21 Score=185.75 Aligned_cols=160 Identities=33% Similarity=0.422 Sum_probs=126.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|.+|||||||+|+|.+.....+...+++|++.....+...+..+.+|||||+... ...+...+...+..++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPD-DDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCc-chhHHHHHHHHHHHHHHh
Confidence 3799999999999999999999988778899999999888888888899999999997542 122444455566677899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++++|+|++.+....+..+..+++. .+.|+++|+||+|+..... ....+. ..+...++++||++|.|+++++
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~---~~~~~~-~lg~~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA---DAYEFY-SLGLGEPYPISAEHGRGIGDLL 154 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh---hHHHHH-hcCCCCCEEEEeeCCCCHHHHH
Confidence 999999999998877777777777776 6899999999999765221 112222 2344457999999999999999
Q ss_pred HHHHHhC
Q 018949 276 DWILTKL 282 (348)
Q Consensus 276 ~~i~~~l 282 (348)
+.+....
T Consensus 155 ~~I~~~~ 161 (435)
T PRK00093 155 DAILEEL 161 (435)
T ss_pred HHHHhhC
Confidence 9998744
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=158.91 Aligned_cols=154 Identities=20% Similarity=0.229 Sum_probs=107.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.|+++|.+|+|||||+|+|.+..+.. ...+++|.......+.. .+..+.+|||||. ..+..+ ....+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~--~~~~~~-------~~~~~ 71 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH--EAFTNM-------RARGA 71 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCc--HHHHHH-------HHHHH
Confidence 69999999999999999999877653 33445565544344444 3678999999995 222222 22346
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHHHh-----cCCCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEK-----FTDVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~-----~~~~~~i~~vSA~ 266 (348)
..+|++++|+|++++...........+.. .++|+++|+||+|+.... ........+.. .....+++++||+
T Consensus 72 ~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T cd01887 72 SLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAK 149 (168)
T ss_pred hhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecc
Confidence 78999999999987654444344444444 678999999999987532 22222222211 1223579999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|+++|+++|.+..
T Consensus 150 ~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 150 TGEGIDDLLEAILLLA 165 (168)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999998764
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-21 Score=161.07 Aligned_cols=155 Identities=21% Similarity=0.262 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE---EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+|+++|++|||||||++++.+..+. ...+.+..... ....+.....+.+||||| +..+..+ ...+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~ 71 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG--QERFRAV-------TRSY 71 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCC--cHHHHHH-------HHHH
Confidence 37999999999999999999988764 23333322221 122333456789999999 4333322 3445
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.+|++|+|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 150 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENG-LLFLECSAKTGE 150 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence 78999999999998754 33334443332222257899999999999754322 122222333333 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++|..+.+.+
T Consensus 151 ~i~e~f~~l~~~~ 163 (166)
T cd04122 151 NVEDAFLETAKKI 163 (166)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988755
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-21 Score=162.38 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+..+.. ....+..... ...+......+.+||||| +..+..+ ...++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~l-------~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAG--QAEFTAM-------RDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCC--chhhHHH-------hHHHh
Confidence 489999999999999999999877642 2222222222 223334446799999999 4444333 33447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc--ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~--~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
..+|++|+|+|.++.. .....+ ...+.. ...+.|+++|+||+|+.....+. +....+.+..+ +++++|||++|
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~-~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sa~~~ 149 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEF-KKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFN-CPFFETSAALR 149 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHH-HHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhC-CEEEEEecCCC
Confidence 7899999999998755 222222 222221 12579999999999986543221 12223333333 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|++++|+++.+.+.
T Consensus 150 ~~v~~~f~~l~~~~~ 164 (172)
T cd04141 150 HYIDDAFHGLVREIR 164 (172)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=163.14 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=107.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|..|||||||+.++.+..+... ..+..+....... ++...+.+.+||||| +..+..+ +..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G--~~~~~~l-------~~~ 74 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESP-YGYNMGIDYKTTTILLDGRRVKLQLWDTSG--QGRFCTI-------FRS 74 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCcceeEEEEEEEEECCEEEEEEEEeCCC--cHHHHHH-------HHH
Confidence 345899999999999999999998765321 1112222222222 233447899999999 4444433 334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+++.+|++|+|+|.++.. +....|+..+ ....++.|+|||+||+|+.....+ .+....+.+..+ .++++|||++|
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i-~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~-~~~~e~SAk~g 152 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEI-DEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNG-MTFFEVSPLCN 152 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcC-CEEEEecCCCC
Confidence 578999999999998754 4444444443 333368999999999999653222 223334444444 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|++++|.+|.+.+.
T Consensus 153 ~~V~~~F~~l~~~i~ 167 (189)
T cd04121 153 FNITESFTELARIVL 167 (189)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=164.30 Aligned_cols=157 Identities=20% Similarity=0.174 Sum_probs=105.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+... +..+..... ...++.....+.+||||| +..+..+.. .++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G--~~~~~~l~~-------~~~~ 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAG--QEEFDRLRS-------LSYA 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc--cCCcceeeeEEEEEECCEEEEEEEEECCC--Chhcccccc-------cccc
Confidence 799999999999999999998876422 222221111 122333446799999999 444333322 3478
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-------------HHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-------------~~~~~~~~~~~~~ 259 (348)
.+|++|+|+|.++.. ......|...+.....+.|+++|+||+|+....+... ....+....+..+
T Consensus 71 ~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (189)
T cd04134 71 DTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALR 150 (189)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 999999999998754 2232223333333336799999999999976433211 1122223334458
Q ss_pred EEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 260 VIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+++|||++|.|++++|.++.+.+..
T Consensus 151 ~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 151 YLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEEccCCcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999987754
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-21 Score=167.61 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=108.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
...+|+|+|.+|||||||++++++..+....++.+.+.......++.....+.+|||||. ..+..+ ...++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ--ERFRTL-------TSSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHH
Confidence 345899999999999999999998876433333333222222233344568999999994 333333 23447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc--cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~--~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+.+|++|+|+|+++.. ......+...+... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~-~~~~e~SAk~~ 162 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHG-CLFLECSAKTR 162 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 8999999999998754 22222233322211 2468999999999997543321 11222222223 47899999999
Q ss_pred CCHHHHHHHHHHhCCCCCCC
Q 018949 269 HGVEDIRDWILTKLPLGPAY 288 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~ 288 (348)
.|+++++++|.+.+...+..
T Consensus 163 ~~v~~l~~~l~~~~~~~~~~ 182 (211)
T PLN03118 163 ENVEQCFEELALKIMEVPSL 182 (211)
T ss_pred CCHHHHHHHHHHHHHhhhhh
Confidence 99999999999888665443
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=165.75 Aligned_cols=157 Identities=27% Similarity=0.368 Sum_probs=113.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee-----------------ecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCch
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~ 175 (348)
..+|+++|+.++|||||+++|++..... .....+.|.......+. ..+..++++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 3489999999999999999998543210 00112333333333444 6678999999999532
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH---
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE--- 252 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--- 252 (348)
+...+...+..+|++|+|+|+..+...+.......+.. .++|+++|+||+|+. ..+..+...++.
T Consensus 83 ---------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 83 ---------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKMDLI-EKELEEIIEEIKEKL 150 (188)
T ss_dssp ---------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETCTSS-HHHHHHHHHHHHHHH
T ss_pred ---------eeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeeccch-hhhHHHHHHHHHHHh
Confidence 23445556789999999999999998888888888777 789999999999998 333333333332
Q ss_pred -hcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 253 -KFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 253 -~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+.. ...|++++||.+|.|+++|++.|.+.+|
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 111 1458999999999999999999999876
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=163.62 Aligned_cols=157 Identities=24% Similarity=0.242 Sum_probs=105.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc------eeeecCCCCceEEeEEEEEe--------------CCCeeEEEEeCCCCchh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICS--------------GPEYQMILYDTPGIIEK 176 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~------~~~~~~~~~~t~~~~~~~~~--------------~~~~~~~l~DtpG~~~~ 176 (348)
+|+++|++|+|||||+++|++.. .......+++|.......+. ..+..+.+|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 69999999999999999998731 11122334555544332222 2367899999999521
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH----HHHH
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYE 252 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~----~~~~ 252 (348)
+...+......+|++++|+|++.+.............. .+.|+++|+||+|+.......... ..+.
T Consensus 81 --------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 81 --------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred --------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 22334455678999999999988765444333333333 467999999999998544332222 2221
Q ss_pred hc-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 253 KF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 253 ~~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.. ....+++++||++|.|+++|++++.++++.
T Consensus 151 ~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 151 KTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11 233589999999999999999999998864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=159.53 Aligned_cols=156 Identities=21% Similarity=0.254 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+.++... ..+..+.......+ ......+.+|||||. ..+..+ ...++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD-SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ--ERYRAI-------TSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHHHH
Confidence 4899999999999999999998876532 22333322222222 333357899999994 333322 23446
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+.++++|+|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.|
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 152 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNG-LSFIETSALDGTN 152 (165)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcC-CEEEEEECCCCCC
Confidence 8999999999998543 23333333332222246899999999998753321 112222333233 4799999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
++++++++.+.+
T Consensus 153 v~~l~~~l~~~i 164 (165)
T cd01868 153 VEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=160.01 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|++|||||||++++.+.++.. ...+..+....... +......+.+|||||. ..+..+ ...++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~~-------~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHHHh
Confidence 389999999999999999999887653 22232222222222 2333467899999994 333322 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+.+|++++|+|+++.. .....++....+....+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.|
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 151 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELG-IPFLETSAKNATN 151 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCCcC
Confidence 8999999999998643 33333333332221256899999999998654322 112223333333 4899999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++++..|.+.+
T Consensus 152 v~~~~~~i~~~~ 163 (166)
T cd01869 152 VEQAFMTMAREI 163 (166)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=160.89 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=103.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||+++++...+.. ..++.+..........+.....+.+|||||. ..+..+.. .++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ--EKFGGLRD-------GYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC--hhhccccH-------HHhcC
Confidence 79999999999999999998765431 1122222222222222344578999999994 33333322 23678
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
+|++|+|+|.++.. .....++....+. ..+.|+++|+||+|+......... ..+... ...+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~piiiv~nK~Dl~~~~~~~~~-~~~~~~-~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 73 GQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CGNIPIVLCGNKVDIKDRKVKAKQ-ITFHRK-KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhcccccCCHHH-HHHHHH-cCCEEEEEeCCCCCChHH
Confidence 99999999998654 2233333333222 247999999999999743321222 222222 345799999999999999
Q ss_pred HHHHHHHhCCCCC
Q 018949 274 IRDWILTKLPLGP 286 (348)
Q Consensus 274 L~~~i~~~l~~~~ 286 (348)
+|++|.+.+...+
T Consensus 150 ~f~~l~~~~~~~~ 162 (166)
T cd00877 150 PFLWLARKLLGNP 162 (166)
T ss_pred HHHHHHHHHHhcc
Confidence 9999998776533
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=169.55 Aligned_cols=168 Identities=24% Similarity=0.292 Sum_probs=132.8
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+...++|+|.|+||||||||++++++.++. +.++|.||+....+.+..+..+++++||||+.+.+....+..-.+.+..
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 345568999999999999999999999987 6899999999999999999999999999999987776666666565655
Q ss_pred hccCccEEEEEecCCCCC----chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.-+-.++|+|++|.+... +.+...+.+.... .+.|+++|+||+|..+...+++....+...... ....+++..
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~--f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~ 320 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL--FKAPIVVVINKIDIADEEKLEEIEASVLEEGGE-EPLKISATK 320 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh--cCCCeEEEEecccccchhHHHHHHHHHHhhccc-cccceeeee
Confidence 566789999999998654 4444444444333 348999999999999877776665554444433 457788999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
+.+++.+...+.....
T Consensus 321 ~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 321 GCGLDKLREEVRKTAL 336 (346)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 9999999888877643
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=159.15 Aligned_cols=155 Identities=16% Similarity=0.212 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe--EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|||||||++++.+.++.. ...+..+... ...........+.+|||||. ..+..+ ...++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--PEYLEV-------RNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCcc--HHHHHH-------HHHHhc
Confidence 79999999999999999999987642 2222222222 12223345678999999994 332222 334478
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccccc-----CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-----DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.+|++|+|+|.++.. .....++....+... .+.|+++|+||+|+...... ......+....+ .+++++||+
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 150 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG-FKYFETSAC 150 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC-CeEEEEECC
Confidence 999999999998754 333333333332221 46899999999999732211 111222222233 479999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|+++++++|.+.+
T Consensus 151 ~~~gi~~l~~~l~~~l 166 (168)
T cd04119 151 TGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=161.37 Aligned_cols=155 Identities=28% Similarity=0.333 Sum_probs=101.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee--------ecC------CCCceEEeEEEEE-----eCCCeeEEEEeCCCCchhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGIC-----SGPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~--------~~~------~~~~t~~~~~~~~-----~~~~~~~~l~DtpG~~~~~ 177 (348)
+|+++|++|+|||||+++|++..... ..+ ..+.|.......+ +..+..+.+|||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 69999999999999999998743110 111 1233333222222 34567899999999632
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (348)
+ ...+..++..+|++|+|+|++++........+..+.. .++|+++|+||+|+..... ......+....+.
T Consensus 80 ~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~ 149 (179)
T cd01890 80 F-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADP-ERVKQQIEDVLGL 149 (179)
T ss_pred h-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCH-HHHHHHHHHHhCC
Confidence 2 2234455788999999999987654333222222223 5789999999999865321 1122233332222
Q ss_pred --CeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 258 --DEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 258 --~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+++++||++|.|+++|++++.+.++
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999998774
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=160.02 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++....+. ...++++.......+ ......+.+|||||. ..+..+.. .++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--EQFTAMRD-------LYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCc--ccchhHHH-------HHH
Confidence 37999999999999999999876543 233444443333223 333566789999994 44444433 346
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.+|++++|+|.++.. +....++...... ...+.|+++|+||+|+....... .....+....+ .+++++||++|.
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKAKI 149 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-CEEEEeeCCCCC
Confidence 8899999999987543 3333344443322 12679999999999997532211 11223333333 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++.++.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=161.58 Aligned_cols=157 Identities=22% Similarity=0.268 Sum_probs=111.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec---------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+|+++|.+|+|||||+|++++....... ...++|.......+...+..+.+|||||+.+ +
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~--~--- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED--F--- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH--H---
Confidence 4899999999999999999887654221 1223444444444556678899999999642 1
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHH----HHhc---
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW----YEKF--- 254 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~----~~~~--- 254 (348)
...+..++..+|++++|+|++.+.......+...+.. .+.|+++|+||+|+............ +...
T Consensus 76 ----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 76 ----SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred ----HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 1224445679999999999988775555555555554 68999999999999864333222222 2221
Q ss_pred ---------CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 255 ---------TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 255 ---------~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
....+++++||++|.|++++++++.+.++.
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 134689999999999999999999998753
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=164.89 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=104.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--Ee-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||++++++..+.. ...+....+..... +. .....+.+|||||. ..+..+ ...++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 71 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ--ERFGGM-------TRVYY 71 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--hhhhhh-------HHHHh
Confidence 79999999999999999999876542 11222222222222 23 44677999999994 333332 34557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc----ccCCCCEEEEEeccCCCChh-hHHHHHHHHHhcCCCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~----~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
+.+|++|+|+|.++.. .....|+...... ...++|+++|+||+|+.... ........+....+..+++++||+
T Consensus 72 ~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak 151 (201)
T cd04107 72 RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAK 151 (201)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCC
Confidence 8999999999998754 3333332222111 12578999999999997321 112223344444454589999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|+++++++|.+.+..
T Consensus 152 ~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 152 EGINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=161.57 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=103.1
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
|+++|.+|||||||++++.+..+.. .+..+....... .++.....+.+|||||. ..+..+.. .++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQ--EDYDRLRP-------LSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCC--cccchhch-------hhcCC
Confidence 5899999999999999999987642 222232222222 22333457999999994 33333322 34789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh-H------------HHHHHHHHhcCCCCeE
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVDEV 260 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~~i 260 (348)
+|++|+|+|.++.. +.....|...+.....+.|+++|+||+|+..... . .+....+....+..++
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKY 149 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEE
Confidence 99999999998653 3332334444433336899999999999975221 0 1112234444455589
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (348)
++|||++|.|++++|+.+.+.+
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=158.33 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe--EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|+|||||++++.+..+... ..+..+... ....++.....+.+||||| +..+..+ ...++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G--~~~~~~~-------~~~~~ 75 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAG--QERFRSL-------RTPFY 75 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCC--hHHHHHh-------HHHHh
Confidence 4899999999999999999998776421 122222222 2223345557789999999 4443333 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
+.+|++++|+|.++.. .....+........ ..+.|+++|+||+|+............+....+..+++++||++
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 8999999999987654 33333333332211 25689999999999864322222233333344455899999999
Q ss_pred CCCHHHHHHHHHHh
Q 018949 268 GHGVEDIRDWILTK 281 (348)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (348)
|.|+.+++..+.+.
T Consensus 156 ~~~v~~~~~~~~~~ 169 (170)
T cd04116 156 ATNVAAAFEEAVRR 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998865
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=158.14 Aligned_cols=151 Identities=20% Similarity=0.238 Sum_probs=99.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce--eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+... ....++.+.+. ..+...+..+.+|||||. ..+..+ +..++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV----ESFEKGNLSFTAFDMSGQ--GKYRGL-------WEHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce----EEEEECCEEEEEEECCCC--HhhHHH-------HHHHHc
Confidence 489999999999999999998643 22233333222 223456788999999994 333322 334578
Q ss_pred CccEEEEEecCCCCCc--hHHHHHHHhccc--c-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCC
Q 018949 195 NADCIVVLVDACKAPE--RIDEILEEGVGD--H-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAK 266 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~--~~~~~~~~~~~~--~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~ 266 (348)
.+|++|+|+|+++... ....++....+. . ..++|+++|+||+|+.+.....+....+... ....+++++||+
T Consensus 68 ~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~ 147 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNAL 147 (162)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCC
Confidence 9999999999987542 222333333322 1 2579999999999997643322222222111 112358999999
Q ss_pred CCCCHHHHHHHHHH
Q 018949 267 YGHGVEDIRDWILT 280 (348)
Q Consensus 267 ~g~gi~eL~~~i~~ 280 (348)
+|.|+++++++|.+
T Consensus 148 ~g~gv~~~~~~l~~ 161 (162)
T cd04157 148 TGEGLDEGVQWLQA 161 (162)
T ss_pred CCCchHHHHHHHhc
Confidence 99999999999865
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=160.64 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=102.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||+.++++..+. ..+..+...... ..++.....+.+||||| +..+..+. ..++.
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~~-------~~~~~ 71 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAG--QEDYDRLR-------PLSYP 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCC--chhhhhhh-------hhhcC
Confidence 7999999999999999999987653 222223222222 22333446789999999 44433332 23578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh-H------------HHHHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~~ 259 (348)
.+|++|+|+|.++.. ......|...+.....+.|+++|+||+|+..... . ......+....+..+
T Consensus 72 ~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 151 (174)
T cd01871 72 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 151 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence 999999999998754 2222233333333235799999999999964221 0 111222333344458
Q ss_pred EEEecCCCCCCHHHHHHHHHHh
Q 018949 260 VIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
+++|||++|.|++++|+.+.+.
T Consensus 152 ~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 152 YLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEecccccCCHHHHHHHHHHh
Confidence 9999999999999999998764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=159.67 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|.+|||||||++++.+.++..... +.+.+..............+.+|||||. ..+.. ....+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~ 75 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ--ESFRS-------ITRSYYR 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhc
Confidence 489999999999999999999887653322 2222222233333444568999999993 33222 2345578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|+++.. .....++....+...++.|+++|+||+|+...... ......+....+ .+++++||++|.|+
T Consensus 76 ~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i 154 (168)
T cd01866 76 GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHG-LIFMETSAKTASNV 154 (168)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999998643 33333433333322357999999999999743221 112222222233 47999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
++++.++.+.+
T Consensus 155 ~~~~~~~~~~~ 165 (168)
T cd01866 155 EEAFINTAKEI 165 (168)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=157.32 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=102.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||++++++..+.... +..+.+.......++.....+.+||||| +..+..+ ...+++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~~~~ 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAG--QERFQTM-------HASYYHK 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCC--chhhhhh-------hHHHhCC
Confidence 7999999999999999999987764221 1111122222223344557789999999 4343332 3445789
Q ss_pred ccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 196 ADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 196 ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
+|++++|+|++++.. .... +...++....+.|+++|+||+|+.... ..+ ...+....+ .+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~-~~~~~~~~~-~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 73 AHACILVFDVTRKITYKNLSK-WYEELREYRPEIPCIVVANKIDLDPSV-TQK-KFNFAEKHN-LPLYYVSAADGTNVVK 148 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEECccCchhH-HHH-HHHHHHHcC-CeEEEEeCCCCCCHHH
Confidence 999999999987542 2223 333333323579999999999985322 111 222222223 4899999999999999
Q ss_pred HHHHHHHhCC
Q 018949 274 IRDWILTKLP 283 (348)
Q Consensus 274 L~~~i~~~l~ 283 (348)
+++.+.+.+.
T Consensus 149 l~~~l~~~~~ 158 (161)
T cd04124 149 LFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHH
Confidence 9999987653
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=156.79 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=100.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
||+++|.+|||||||++++....+.. ...|+.... ..+......+.+|||||. ..+. ..+..++..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~---~~pt~g~~~-~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNV-ETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc---cCCCCCcce-EEEEECCEEEEEEECCCC--HhHH-------HHHHHHhcCC
Confidence 79999999999999999997665532 122222211 234456788999999994 3322 2234568999
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~g 270 (348)
|++|+|+|+++.. .....++...+.. ...+.|+++|+||+|+.......+....+.. ......++++||++|.|
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999998643 3334444444432 1146899999999999754322222222211 11223578999999999
Q ss_pred HHHHHHHHHH
Q 018949 271 VEDIRDWILT 280 (348)
Q Consensus 271 i~eL~~~i~~ 280 (348)
+++++++|.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=159.91 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=103.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++....+. ...| |+.... ..+..+...+.+|||||. ..+.. .+..++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~-t~~~~~-~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~ 78 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--TTIP-TIGFNV-ETVTYKNISFTVWDVGGQ--DKIRP-------LWRHYY 78 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC-ccccce-EEEEECCEEEEEEECCCC--hhhHH-------HHHHHh
Confidence 3458999999999999999999765543 2222 222211 223456788999999994 33322 234557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~~ 267 (348)
+.+|++|+|+|+++.. .....++...+... ..+.|++||+||+|+.+.....+....+. .......++++||++
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCC
Confidence 9999999999998753 44444555544331 24689999999999975422222222221 111223567899999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|+++++++|.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=180.25 Aligned_cols=163 Identities=23% Similarity=0.262 Sum_probs=114.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
++|+++|++|||||||+|+|++.++. +++.+++|.+.....+...+ ..+.+|||||+.......+...+ ..+...+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f-~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAF-KATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHH-HHHHHHhh
Confidence 58999999999999999999998876 67888899887766655444 37899999997443223333333 33556678
Q ss_pred CccEEEEEecCCCCCchHH-HHHHHhccccc-CCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAPERID-EILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~-~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
.+|++++|+|++++..... ..+...+.... .+.|+++|+||+|+....... ..... .+...++++||++|.|++
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~~~--~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDRDE--ENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHHHh--cCCCceEEEeCCCCCCHH
Confidence 9999999999988653222 12222222221 479999999999997532111 11111 122235889999999999
Q ss_pred HHHHHHHHhCCC
Q 018949 273 DIRDWILTKLPL 284 (348)
Q Consensus 273 eL~~~i~~~l~~ 284 (348)
+|+++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999988753
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=157.90 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=103.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|++|||||||++++.+.++.... ++.+.........+......+.+|||||. ..+.. ....+++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~~~ 72 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--ERFRS-------VTRSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch--HHHHH-------hHHHHhcC
Confidence 7999999999999999999988764321 11111122222223334467899999994 33222 23445789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|+++.. .....++.........+.|+++|+||+|+...... ......+....+ .+++++||+++.|++
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 151 (161)
T cd04113 73 AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENG-LLFLETSALTGENVE 151 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC-CEEEEEECCCCCCHH
Confidence 99999999998754 23333333322222368999999999999754322 112222333333 589999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
++++++.+.+
T Consensus 152 ~~~~~~~~~~ 161 (161)
T cd04113 152 EAFLKCARSI 161 (161)
T ss_pred HHHHHHHHhC
Confidence 9999998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-20 Score=159.56 Aligned_cols=166 Identities=27% Similarity=0.335 Sum_probs=114.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-hhhHHH---HHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSM---MMKN 188 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~l~~~---~~~~ 188 (348)
..++|+++|.+|+|||||+|++++.+ ...+++.+++|+....... +..+.+|||||+..... ...... ....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45589999999999999999999976 4556677777776543332 36799999999642111 001111 1222
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC--CCeEEEecCC
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD--VDEVIPVSAK 266 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~i~~vSA~ 266 (348)
.......++++++|+|++.+.......+...+.. .+.|+++++||+|+....+.......+..... ..+++++||+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~ 177 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSL 177 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcC
Confidence 2233345678999999887765555555555554 57899999999999876544433333322221 3578999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|++++++.|.+.+.+
T Consensus 178 ~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 178 KKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 999999999999987754
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=160.31 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++....+....++.+. ....+..++..+.+||||| +..+.. .+..++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~----~~~~~~~~~~~~~i~D~~G--q~~~~~-------~~~~~~ 82 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGG--QDKIRP-------LWRHYF 82 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcce----eEEEEEECCEEEEEEECCC--CHHHHH-------HHHHHh
Confidence 345899999999999999999987655322222221 1223455678899999999 433332 244557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
+.+|++|+|+|+++.. .....++...+.. ...+.|++||+||+|+.......+....+.-. .....++++||++
T Consensus 83 ~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 8999999999998653 2333344444332 11478999999999997654433333332211 1122467899999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|+|+++++++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 163 GEGLYEGLDWLSNNIA 178 (181)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=164.58 Aligned_cols=155 Identities=21% Similarity=0.199 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+.. ..++++..... ..+......+.+|||||. ..+..+ ...++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ--EEYTAL-------RDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHHH
Confidence 48999999999999999999877642 23333322222 223333456899999994 333333 234578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
.+|++++|+|.++.. .....++..+.... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SAk~~ 148 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG-CEFIEASAKTN 148 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEecCCCC
Confidence 999999999997654 23333333222211 2568999999999996433221 11222333333 37999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++.++.+.+.
T Consensus 149 ~~v~~l~~~l~~~l~ 163 (190)
T cd04144 149 VNVERAFYTLVRALR 163 (190)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-21 Score=162.63 Aligned_cols=159 Identities=30% Similarity=0.362 Sum_probs=109.7
Q ss_pred EEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccE
Q 018949 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~ 198 (348)
++|++|||||||+|+|.+.+. .+...+++|.......+..+ +..+.+|||||+.+.... ...+...+...+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc--CCCccHHHHHHHhccCE
Confidence 589999999999999999876 35677888888777777676 889999999997432111 01111233445678999
Q ss_pred EEEEecCCCCC-----c---hHHHHHHHhcccc-------cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEe
Q 018949 199 IVVLVDACKAP-----E---RIDEILEEGVGDH-------KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 199 iv~VvD~~~~~-----~---~~~~~~~~~~~~~-------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~v 263 (348)
+++|+|+++.. . ....+........ ..+.|+++|+||+|+....................+++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 99999998762 1 1112222222111 1368999999999998765544332122223334579999
Q ss_pred cCCCCCCHHHHHHHHHHh
Q 018949 264 SAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~ 281 (348)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=161.25 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=107.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|||||||++++.+..+. ..+.+|...... ..++.....+.+|||+| ++.+..+. ..+
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG--~e~~~~~~-------~~~ 73 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSG--SPYYDNVR-------PLS 73 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCC--chhhHhhh-------hhh
Confidence 348999999999999999999988764 223333322222 22344457899999999 54444432 345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh------------hhH-HHHHHHHHhcCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTDV 257 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------------~~~-~~~~~~~~~~~~~ 257 (348)
++.+|++++|+|.++.. ......|...++...++.|+++|+||+|+... ..+ .+....+.+..+.
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 153 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA 153 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 88999999999998754 33223344444433367999999999998531 011 2234455555565
Q ss_pred CeEEEecCCCCCC-HHHHHHHHHHh
Q 018949 258 DEVIPVSAKYGHG-VEDIRDWILTK 281 (348)
Q Consensus 258 ~~i~~vSA~~g~g-i~eL~~~i~~~ 281 (348)
.++++|||++|.| ++++|..+.+.
T Consensus 154 ~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 154 ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 5899999999998 99999998874
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=161.19 Aligned_cols=155 Identities=19% Similarity=0.138 Sum_probs=105.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+..+..+.++. ......+..++..+.+|||||.. .+.. .+..++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~G~~--~~~~-------~~~~~~ 82 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQ----HPTSEELAIGNIKFTTFDLGGHQ--QARR-------LWKDYF 82 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCcc----ccceEEEEECCEEEEEEECCCCH--HHHH-------HHHHHh
Confidence 5569999999999999999999998764332222 22223344567889999999952 2222 233557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc----------CCCCeE
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEV 260 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~i 260 (348)
..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+... .....+
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 8999999999998753 22333444443321 1578999999999986433333333332110 134468
Q ss_pred EEecCCCCCCHHHHHHHHHHh
Q 018949 261 IPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~ 281 (348)
++|||++|.|+++++++|.+.
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=156.42 Aligned_cols=152 Identities=20% Similarity=0.232 Sum_probs=100.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++.+..+....++.+.+ ...+.......+.+|||||.. .+. ..+..++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~l~i~D~~G~~--~~~-------~~~~~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN---VEMLQLEKHLSLTVWDVGGQE--KMR-------TVWKCYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcc---eEEEEeCCceEEEEEECCCCH--hHH-------HHHHHHhccC
Confidence 4899999999999999999988764332222222 111222345789999999952 222 2233457899
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH--hcC--CCCeEEEecCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSAKYGH 269 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~i~~vSA~~g~ 269 (348)
|++|+|+|++++. .....++...++.. ..+.|+++|+||+|+.......+....+. ... ...++++|||++|+
T Consensus 69 ~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 9999999998754 33344444444331 15799999999999964322222222221 111 12368999999999
Q ss_pred CHHHHHHHHHH
Q 018949 270 GVEDIRDWILT 280 (348)
Q Consensus 270 gi~eL~~~i~~ 280 (348)
|+++++++|.+
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=165.82 Aligned_cols=159 Identities=14% Similarity=0.053 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||++++.+..+.. .+.+|...... ..++...+.+.+|||+| ++.+..+. ..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG--~e~~~~~~-------~~ 80 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSG--SPYYDNVR-------PL 80 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCC--chhhHHHH-------HH
Confidence 34589999999999999999999877642 22223222222 22344567899999999 54444332 34
Q ss_pred hccCccEEEEEecCCCCCchH--HHHHHHhcccccCCCCEEEEEeccCCCCh------------hhH-HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~--~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------------~~~-~~~~~~~~~~~~ 256 (348)
++..+|++|+|+|.++...-. ...|...+.....+.|+|+|+||+|+... ..+ .+....+....+
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 578999999999998755322 12333333333357899999999998631 111 223455555556
Q ss_pred CCeEEEecCCCCC-CHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAKYGH-GVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~~g~-gi~eL~~~i~~~l~ 283 (348)
..++++|||++|. |++++|..+...+.
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 5578999999998 89999999887653
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=160.40 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=105.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+. ..+.+|...... ..++.....+.+|||+| +..+..+. ..+++
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G--~~~~~~~~-------~~~~~ 71 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSG--SPYYDNVR-------PLCYP 71 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCC--chhhhhcc-------hhhcC
Confidence 7999999999999999999988764 223333222222 22344457799999999 44444332 23578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh------------hhH-HHHHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------------~~~-~~~~~~~~~~~~~~~ 259 (348)
.+|++|+|+|.++.. ......|...++...++.|+++|+||+|+.+. ..+ .+....+....+..+
T Consensus 72 ~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~ 151 (178)
T cd04131 72 DSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEI 151 (178)
T ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCE
Confidence 999999999998755 33222344444443467999999999998541 011 223444555556557
Q ss_pred EEEecCCCCCC-HHHHHHHHHHh
Q 018949 260 VIPVSAKYGHG-VEDIRDWILTK 281 (348)
Q Consensus 260 i~~vSA~~g~g-i~eL~~~i~~~ 281 (348)
+++|||++|+| ++++|..+.+.
T Consensus 152 ~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 152 YLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEECccCcCCcCHHHHHHHHHHH
Confidence 99999999995 99999998874
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=158.02 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+.. ....+...... ..++.....+.+|||||. ..+..+.. .++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~ 71 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASMRD-------LYIK 71 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCc--ccccchHH-------HHHh
Confidence 79999999999999999999877642 22223222222 222333456889999994 44444432 3467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++++|+|.++.. .....++....+.. ..++|+++|+||+|+.....+. .....+....+ .+++++||++|.|
T Consensus 72 ~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 150 (163)
T cd04176 72 NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG-CPFMETSAKSKTM 150 (163)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC-CEEEEecCCCCCC
Confidence 899999999998754 33333333332221 1579999999999986432221 11233333333 4889999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++++.++.+.+
T Consensus 151 v~~l~~~l~~~l 162 (163)
T cd04176 151 VNELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=162.13 Aligned_cols=158 Identities=19% Similarity=0.166 Sum_probs=104.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|||||||++++.+..+.. ....|....... .++.....+.+|||||. ..+..+ ...+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~ 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQ--EEYSAM-------RDQY 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCC--ccchhh-------HHHH
Confidence 4589999999999999999999877642 222222222222 23444567889999994 334433 2235
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++.+|++++|+|+++.. .....++....+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~-~~~~e~Sak~~ 152 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFG-IPFLETSAKQR 152 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhC-CEEEEeeCCCC
Confidence 78999999999998754 23333333332221 1578999999999986533221 11222222223 48999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++++.+|.+.+..
T Consensus 153 ~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 153 VNVDEAFYELVREIRK 168 (189)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999877643
|
|
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=160.88 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=104.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE-EEE-e-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-GIC-S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~-~~~-~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|+|||||++++.+..+. ..+..+...... .+. . .....+.+||||| +..+..+ ...++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 70 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAG--QEEYDRL-------RPLSY 70 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCC--chhHHHH-------HHHhC
Confidence 7999999999999999999988764 223333222222 222 2 3356799999999 4333333 22347
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh-----HHHHHHHHHhcCCCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-----IAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
..+|++++|+|.++.. ......|.........+.|+++|+||+|+..... .......+....+..+++++||+
T Consensus 71 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 8999999999998654 2222223333332236799999999999865321 12223334444454478999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|+++++..+.+.+..
T Consensus 151 ~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 151 TMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-20 Score=157.27 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=104.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE-eEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||++++.+.++... .+.+... .....+......+.+|||||..+ +. ..+..++..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~-------~~~~~~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN--VPRVLPEITIPADVTPERVPTTIVDTSSRPQ--DR-------ANLAAEIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc--CCCcccceEeeeeecCCeEEEEEEeCCCchh--hh-------HHHhhhccc
Confidence 799999999999999999998776422 2222111 12223344567899999999532 11 123344689
Q ss_pred ccEEEEEecCCCCCchHH--HHHHHhcccccCCCCEEEEEeccCCCChhhH---HHHHHHHH-hcCCCCeEEEecCCCCC
Q 018949 196 ADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWYE-KFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~-~~~~~~~i~~vSA~~g~ 269 (348)
+|++++|+|++++..-.. ..|...++....+.|+++|+||+|+.+.... ......+. ......+++++||++|.
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 999999999987553322 3444444433357999999999999764432 22222222 22222479999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++|+.+.+.+.
T Consensus 151 ~v~~lf~~~~~~~~ 164 (166)
T cd01893 151 NVSEVFYYAQKAVL 164 (166)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987653
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=159.16 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++.+.++. ....++........ +....+.+.+|||||. ..+..++. .++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~ 70 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ--EDYDRLRP-------LSYP 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCc--cccccccc-------ccCC
Confidence 7999999999999999999988764 22333333222222 2333456889999994 33333322 3478
Q ss_pred CccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~~ 259 (348)
.+|++++|+|.++... .....+...++....+.|+++|+||+|+.+..... +....+....+..+
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 9999999999987542 23233344333334789999999999986532211 12233334445557
Q ss_pred EEEecCCCCCCHHHHHHHHHHhC
Q 018949 260 VIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
+++|||++|.|++++|+.+.+.+
T Consensus 151 ~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEecCCcCCCHHHHHHHHHHHh
Confidence 99999999999999999988754
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=158.32 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=104.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCce-EEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t-~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||++++++..+.. .+..|. ...... .+......+.+||||| +..+..+ ...++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK--NYKATIGVDFEMERFEILGVPFSLQLWDTAG--QERFKCI-------ASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEeCCC--hHHHHhh-------HHHHh
Confidence 79999999999999999999987642 222222 222222 2333356799999999 4443333 33457
Q ss_pred cCccEEEEEecCCCC--CchHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH---HHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~--~~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
+.+|++++|+|+++. ......|+....+.. ....|+++|+||+|+.+.... ......+....+ .+++++||++
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 149 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALS 149 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCC
Confidence 899999999999763 344444444433322 134679999999998654321 222233333333 3789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|++++|..|.+.+.+
T Consensus 150 g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 150 GENVREFFFRVAALTFE 166 (170)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887654
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-20 Score=159.92 Aligned_cols=157 Identities=23% Similarity=0.288 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCce-EEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t-~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|..|||||||++++.+..+.. .+..|. .... ...+......+.+|||+| +..+..+ ...++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G--~~~~~~~-------~~~~~ 70 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGG--QREFINM-------LPLVC 70 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCC--chhHHHh-------hHHHC
Confidence 79999999999999999999887642 222222 2222 222333347799999999 4443333 23457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh----h--hHHHHHHHHHhcCCCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP----G--EIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~----~--~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
+.+|++++|+|.++.. .....|+....+......| ++|+||+|+... . ...+....+....+ .+++++||
T Consensus 71 ~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SA 148 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCST 148 (182)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeC
Confidence 8999999999998754 3333444433332223456 688999999521 1 12223334444444 58999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCC
Q 018949 266 KYGHGVEDIRDWILTKLPLGP 286 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~~ 286 (348)
++|.|++++|+++.+.+...+
T Consensus 149 k~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 149 SHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999998775533
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-20 Score=154.71 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=101.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|++|+|||||++++.+..+.. ..++.+.+.......+......+.+|||||. ..+..+ ....++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--ERFRTL-------TSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHHHhCC
Confidence 79999999999999999999887643 2333333333232333444578999999994 332222 2344689
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+.......+....+.... ..+++++||++|.|++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 151 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKH-NMLFIETSAKTRDGVQ 151 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHc-CCEEEEEecCCCCCHH
Confidence 99999999997644 22222222221111 26799999999999973321111222222233 3479999999999999
Q ss_pred HHHHHHHHh
Q 018949 273 DIRDWILTK 281 (348)
Q Consensus 273 eL~~~i~~~ 281 (348)
++++.+.+.
T Consensus 152 ~~~~~~~~~ 160 (161)
T cd01863 152 QAFEELVEK 160 (161)
T ss_pred HHHHHHHHh
Confidence 999998865
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-21 Score=170.09 Aligned_cols=160 Identities=27% Similarity=0.297 Sum_probs=123.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCee-EEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQ-MILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.|++||.||+|||||+|+|...+.. +.+++.||..+..+.+.+++.. +.+.|.||+++.+ ++.+.+.-.+++++++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpk-Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA--h~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPK-VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA--HMNKGLGYKFLRHIER 274 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCc-ccccceeeeccccceeeccccceeEeccCccccccc--cccCcccHHHHHHHHh
Confidence 6999999999999999999999986 7899999999999998887665 9999999998754 3444445567778899
Q ss_pred ccEEEEEecCCCCC----chHHHHHHHhccc---ccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 196 ADCIVVLVDACKAP----ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 196 ad~iv~VvD~~~~~----~~~~~~~~~~~~~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
|+.++||+|.+... -.+...+...+.. ...+.|.++|+||+|++..+ ...+..+.+......++++||+++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcCCCcEEEeeeccc
Confidence 99999999998762 1222222222222 12678999999999997432 223455666666657999999999
Q ss_pred CCHHHHHHHHHHh
Q 018949 269 HGVEDIRDWILTK 281 (348)
Q Consensus 269 ~gi~eL~~~i~~~ 281 (348)
+|+.+|++.|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999988754
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=156.18 Aligned_cols=154 Identities=13% Similarity=0.157 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++.+..+.. ...+..........+. .....+.+||||| +..+..+ ...++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g--~~~~~~~-------~~~~~~ 71 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAG--QERYQTI-------TKQYYR 71 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCC--cHhHHhh-------HHHHhc
Confidence 69999999999999999999877642 2222222222222223 3346789999999 4333333 334578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. +....++.........+.|+++|+||+|+.....+ .+....+.+..+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 150 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNSNI 150 (161)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999998653 33333333322222246899999999999754322 223333444444 58999999999999
Q ss_pred HHHHHHHHHh
Q 018949 272 EDIRDWILTK 281 (348)
Q Consensus 272 ~eL~~~i~~~ 281 (348)
+++|.+|.+.
T Consensus 151 ~~~f~~l~~~ 160 (161)
T cd04117 151 KESFTRLTEL 160 (161)
T ss_pred HHHHHHHHhh
Confidence 9999999865
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-20 Score=159.17 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=102.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE-eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+|+++|.+|||||||++++.+..+....++.+.+........ +..+..+.+|||||. ..+..+ +..++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 73 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ--EKLRPL-------WKSYT 73 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCc--HhHHHH-------HHHHh
Confidence 45899999999999999999998765422122222222221111 335678999999994 333222 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH--hcC--CCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~i~~vSA~ 266 (348)
..+|++++|+|+++.. .....++....... ..++|+++|+||+|+............+. ... ...+++++||+
T Consensus 74 ~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 153 (183)
T cd04152 74 RCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAI 153 (183)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecc
Confidence 8999999999998753 22222333332211 15789999999999874322222211111 111 12368999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 018949 267 YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+++++++|.+.+.
T Consensus 154 ~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 154 IGEGLQEGLEKLYEMIL 170 (183)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999987763
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-20 Score=155.70 Aligned_cols=156 Identities=20% Similarity=0.208 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++.+.++.. ...+..+.......+. .....+.+|||||. ..+.. .....+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~-------~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--ERFRS-------ITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHHhC
Confidence 79999999999999999999887642 2222222222222222 33367899999993 33222 2334478
Q ss_pred CccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|++++.. ....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.|+
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i 150 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHG-LPFFETSAKTNTNV 150 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 9999999999987542 2233333332222257999999999998753221 112222333334 47999999999999
Q ss_pred HHHHHHHHHhCC
Q 018949 272 EDIRDWILTKLP 283 (348)
Q Consensus 272 ~eL~~~i~~~l~ 283 (348)
++++++|.+.+.
T Consensus 151 ~~l~~~i~~~~~ 162 (164)
T smart00175 151 EEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-20 Score=157.87 Aligned_cols=153 Identities=20% Similarity=0.185 Sum_probs=101.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE--eEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|+|||||+++|++.++.. ....+... ............+.+|||||... +..+.. ..++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~--~~~~~~-------~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPT--EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE--YDRLRP-------LSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEeCCCccc--ccccch-------hhcC
Confidence 79999999999999999999887631 12222222 22223334456799999999532 222211 2357
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH------------HHHHHHHHhcCCCCeE
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI------------AKKLEWYEKFTDVDEV 260 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~------------~~~~~~~~~~~~~~~i 260 (348)
.+|++++|+|+++.. ......+...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 899999999998644 22223333333333357999999999999765432 1222333334444489
Q ss_pred EEecCCCCCCHHHHHHHHHH
Q 018949 261 IPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~ 280 (348)
+++||++|.|+++++++|.+
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=160.53 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=103.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||++++.+..+... .++.+.+.......+......+.+|||||. ..+.. ....+++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--~~~~~-------~~~~~~~~ 72 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--ERFRS-------LNNSYYRG 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHh-------hHHHHccC
Confidence 799999999999999999998876421 122222121222223344567899999994 33332 23445789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|.++.. .....++.........+.|+++|+||+|+.....+. .....+....+. +++++||++|.|++
T Consensus 73 ~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~ 151 (188)
T cd04125 73 AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQSINVE 151 (188)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence 99999999998654 333333333322222468999999999987543221 122223333343 79999999999999
Q ss_pred HHHHHHHHhCC
Q 018949 273 DIRDWILTKLP 283 (348)
Q Consensus 273 eL~~~i~~~l~ 283 (348)
+++.++.+.+.
T Consensus 152 ~~f~~l~~~~~ 162 (188)
T cd04125 152 EAFILLVKLII 162 (188)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-20 Score=154.81 Aligned_cols=155 Identities=19% Similarity=0.263 Sum_probs=101.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE-EeEE--EEE-eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRIL--GIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~-~~~~--~~~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+|+++|.+|||||||++++.+........+..++. .... ..+ ......+.+||||| +..+..+ ...+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAG--QELYSDM-------VSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCC--HHHHHHH-------HHHH
Confidence 79999999999999999998653211223333332 2111 112 23457899999999 4333322 3345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-HHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|.++.. .....++ ..+.....+.|+++|+||+|+.+..++.. ....+....+ .+++++||++|.
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWV-NKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ-LKFFKTSALRGV 150 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHH-HHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 78999999999998653 2223333 33322225689999999999975432221 1222333333 478999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++.+.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (164)
T cd04101 151 GYEEPFESLARAF 163 (164)
T ss_pred ChHHHHHHHHHHh
Confidence 9999999998754
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-20 Score=157.56 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=103.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|++|+|||||++++.+.++....++.+.+ ...+..++..+.+|||||. ..+. ..+..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~ 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQ--ESLR-------SSWNTYYT 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCC--HHHH-------HHHHHHhh
Confidence 358999999999999999999887664332222222 2234455788999999994 2222 22345578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g 268 (348)
.+|++++|+|+++.. .....++...+... ..+.|+++++||+|+.......+....+.. .....+++++||++|
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 999999999998753 22334444444331 146899999999998753222222222221 112247899999999
Q ss_pred CCHHHHHHHHHH
Q 018949 269 HGVEDIRDWILT 280 (348)
Q Consensus 269 ~gi~eL~~~i~~ 280 (348)
.|+++++++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999875
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=154.95 Aligned_cols=151 Identities=21% Similarity=0.241 Sum_probs=99.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|+|||||++++....+... .+ +.... ...+...+..+.+|||||.. .+.. .+..++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~--~~-t~~~~-~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT--IP-TIGFN-VETVTYKNLKFQVWDLGGQT--SIRP-------YWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc--CC-ccCcC-eEEEEECCEEEEEEECCCCH--HHHH-------HHHHHhcCC
Confidence 589999999999999999977665321 11 21111 12344567889999999952 2222 234557899
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~g~g 270 (348)
|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.+.....+....+... ....+++++||++|.|
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 9999999998643 22234444443321 1478999999999997543222222222111 1123699999999999
Q ss_pred HHHHHHHHHH
Q 018949 271 VEDIRDWILT 280 (348)
Q Consensus 271 i~eL~~~i~~ 280 (348)
+++++++|.+
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999864
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-20 Score=163.57 Aligned_cols=154 Identities=18% Similarity=0.261 Sum_probs=103.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++++.++.. ..+...... .......+.+.+||||| +..+..+. ..+++.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~--~~~~~~~~~l~iwDt~G--~e~~~~l~-------~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAF--YLKQWGPYNISIWDTAG--REQFHGLG-------SMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEE--EEEEeeEEEEEEEeCCC--cccchhhH-------HHHhccC
Confidence 79999999999999999999988742 122111111 12233457799999999 44444432 2347899
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCC-------------------hhhH-HHHHHHHHhc
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-------------------PGEI-AKKLEWYEKF 254 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~-------------------~~~~-~~~~~~~~~~ 254 (348)
|++|+|+|.++.. .....++..+.+....+.|+|+|+||+|+.. ...+ .+....+...
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 9999999998753 4444555554443335789999999999965 1111 1122222222
Q ss_pred CC-------------CCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 255 TD-------------VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 255 ~~-------------~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+ ..++++|||++|.||+++|..+.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22 147999999999999999999987664
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-20 Score=162.44 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=103.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||+++|.+..+.. ...+..+.+.....+.. ....+.+||||| +..+..+ ...++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G--~~~~~~l-------~~~~~ 71 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGG--QSIGGKM-------LDKYI 71 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCC--cHHHHHH-------HHHHh
Confidence 79999999999999999999877642 22222233333222222 357899999999 4333333 23447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
+.+|++|+|+|+++.. .....|+..+.+.. ..+.|+++|+||+|+...... ......+....+ .+++++||++
T Consensus 72 ~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~~iSAkt 150 (215)
T cd04109 72 YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG-MESCLVSAKT 150 (215)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCC
Confidence 8999999999998653 22323322222211 134689999999999743221 222333333344 4789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|++++|+++.+.+..
T Consensus 151 g~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 151 GDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987754
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-20 Score=154.15 Aligned_cols=153 Identities=20% Similarity=0.293 Sum_probs=101.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+|+++|.+|+|||||++++.+..+... ..+........ ..+. .....+.+||||| +..+..+ ...+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G--~~~~~~~-------~~~~ 71 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD-YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG--QEEFDAI-------TKAY 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc--hHHHHHh-------HHHH
Confidence 799999999999999999998765421 11222222212 2222 3457899999999 4443333 3345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.+|++++|+|+++.. .....++... .....+.|+++|+||+|+.....+. +....+....+. +++++||++|.
T Consensus 72 ~~~~~~~v~v~d~~~~~s~~~l~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKV-EAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRTSVKDDF 149 (162)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 78999999999997654 2223333222 2222579999999999997543221 222333333443 89999999999
Q ss_pred CHHHHHHHHHHh
Q 018949 270 GVEDIRDWILTK 281 (348)
Q Consensus 270 gi~eL~~~i~~~ 281 (348)
|+++++++|...
T Consensus 150 ~v~~l~~~l~~~ 161 (162)
T cd04106 150 NVTELFEYLAEK 161 (162)
T ss_pred CHHHHHHHHHHh
Confidence 999999998764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-20 Score=157.77 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=103.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||++++....+... ..|+.. ....+...+..+.+|||||. ..+.. .+..++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~---~~T~~~-~~~~~~~~~~~~~l~D~~G~--~~~~~-------~~~~~~ 82 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT---IPTIGF-NVETVEYKNLKFTMWDVGGQ--DKLRP-------LWRHYY 82 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCcccc-ceEEEEECCEEEEEEECCCC--HhHHH-------HHHHHh
Confidence 345899999999999999999976555322 122222 22234557789999999994 33222 234558
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
..+|++|+|+|+++.. .....++...+... ..+.|++||+||.|+.......+....+... .....++++||++
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~t 162 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATT 162 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCC
Confidence 8999999999997643 33334444443321 1468999999999987533222222222211 1123567899999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 163 AQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987654
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=157.76 Aligned_cols=156 Identities=22% Similarity=0.189 Sum_probs=105.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||++++.+..+....++. ......+..++..+.+|||||.. .+. ..+..++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~----~~~~~~i~~~~~~~~l~D~~G~~--~~~-------~~~~~~~ 84 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTL----HPTSEELTIGNIKFKTFDLGGHE--QAR-------RLWKDYF 84 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCcc----CcceEEEEECCEEEEEEECCCCH--HHH-------HHHHHHh
Confidence 4568999999999999999999987754222222 22223445567889999999942 222 2234557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh--------------cCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK--------------FTD 256 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~--------------~~~ 256 (348)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.......+....+.. ...
T Consensus 85 ~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T cd00879 85 PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCce
Confidence 8999999999998642 22334444444322 156999999999999753333333333321 112
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..++++|||++|+|+++++++|.+.+
T Consensus 165 ~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred eEEEEEeEecCCCChHHHHHHHHhhC
Confidence 24689999999999999999998653
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-20 Score=157.23 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=102.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--Ee----------CCCeeEEEEeCCCCchhhhhhhH
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS----------GPEYQMILYDTPGIIEKKIHMLD 182 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~----------~~~~~~~l~DtpG~~~~~~~~l~ 182 (348)
..+|+++|.+|||||||++++.+.++.. ...+....+..... +. .....+.+||||| +..+..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~- 79 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG--QERFRSL- 79 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC--hHHHHHH-
Confidence 3589999999999999999999876642 11121111121111 11 2346799999999 4433332
Q ss_pred HHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCC
Q 018949 183 SMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVD 258 (348)
Q Consensus 183 ~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~ 258 (348)
...+++.+|++++|+|+++.. .....|+...... ...+.|+++|+||+|+...... .+....+....+ .
T Consensus 80 ------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~-~ 152 (180)
T cd04127 80 ------TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYG-I 152 (180)
T ss_pred ------HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-C
Confidence 344578999999999998644 2233333332221 1247899999999999753221 122233333334 4
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhC
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
+++++||++|.|+++++++|.+.+
T Consensus 153 ~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 153 PYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998754
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=154.78 Aligned_cols=158 Identities=24% Similarity=0.254 Sum_probs=102.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++.+..+... ..+..+..... ..+......+.+|||||. ..+..+ ...+++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~~-------~~~~~~ 71 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--ERFQSL-------GVAFYR 71 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC-cCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHhH-------HHHHhc
Confidence 799999999999999999998875421 11211222222 223333466889999994 333222 334578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.+|++|+|+|++++. .....+........ ..++|+++|+||+|+..+.. ..+....+....+..+++++||++
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKE 151 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCC
Confidence 999999999998654 22222222222221 13799999999999974221 122223333444556899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|++++++++.+.+..
T Consensus 152 ~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 152 AINVEQAFETIARKALE 168 (172)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999876543
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=154.00 Aligned_cols=160 Identities=21% Similarity=0.218 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|.|+|.+|||||||+|++...++.... .+.+..-......++..-+.+++|||+| ++++.++...+ ++
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG--QERFqsLg~aF-------YR 80 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG--QERFQSLGVAF-------YR 80 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEeccc--HHHhhhcccce-------ec
Confidence 48999999999999999999988875321 1222222222334455567899999999 88888876544 78
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccccc----CCCCEEEEEeccCCCChh---hHHHHHHHHHhcCCCCeEEEecC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK----DKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.+|++++|+|..... +.+..|-.+.+.... ...|+||++||+|+.... .............+..|+|++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 999999999987543 555555555444322 457999999999997632 22344455556666779999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
+...|+++.|..+.+.+..
T Consensus 161 K~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALA 179 (210)
T ss_pred cccccHHHHHHHHHHHHHh
Confidence 9999999999999886644
|
|
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-20 Score=160.28 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=103.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|||||||++++.+..+.. ...+.......... +......+.+|||||. ..+..+ ...+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~~-------~~~~ 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQ--ERFRTI-------TSTY 75 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCc--hhHHHH-------HHHH
Confidence 4589999999999999999999877642 11111111221122 2233467899999994 333322 3445
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. +....++.. +.......|++||+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 76 ~~~a~~iilv~D~~~~~s~~~~~~~~~~-i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 153 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQE-IEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKENI 153 (199)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHH-HHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCCCc
Confidence 78899999999998754 223333333 3333367899999999999754322 122222322333 579999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|+++++++|.+.+.
T Consensus 154 gi~~lf~~l~~~~~ 167 (199)
T cd04110 154 NVEEMFNCITELVL 167 (199)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-20 Score=153.70 Aligned_cols=151 Identities=21% Similarity=0.288 Sum_probs=103.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++.+.......++.+.+. ..+...+..+.+|||||. ..+..+ ...++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~--~~~~~~-------~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQ--DKIRPL-------WKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCC--hhhHHH-------HHHHhccC
Confidence 58999999999999999999987432223333222 223445788999999994 332222 33456889
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~g 270 (348)
|++++|+|++.+. .....++....... ..+.|+++|+||+|+.......+....+.. .....+++++||++|.|
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 9999999998753 33333444333321 257999999999999865433333333322 22345899999999999
Q ss_pred HHHHHHHHHH
Q 018949 271 VEDIRDWILT 280 (348)
Q Consensus 271 i~eL~~~i~~ 280 (348)
+++++++|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=151.29 Aligned_cols=153 Identities=21% Similarity=0.233 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|+|||||++++.+.+.... .++.+.+..............+.+||+||. ..+. ......++.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~-------~~~~~~~~~ 72 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ--ERFR-------SITPSYYRG 72 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh--HHHH-------HHHHHHhcC
Confidence 799999999999999999999887543 122222222222233334578999999994 2222 234455788
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCC-hhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|+++.. .....++.........+.|+++|+||+|+.. ..........+.... ..+++.+||+++.|++
T Consensus 73 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~ 151 (159)
T cd00154 73 AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKEN-GLLFFETSAKTGENVE 151 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHc-CCeEEEEecCCCCCHH
Confidence 99999999998743 2333333333332224699999999999962 221222223333332 3589999999999999
Q ss_pred HHHHHHH
Q 018949 273 DIRDWIL 279 (348)
Q Consensus 273 eL~~~i~ 279 (348)
+++++|.
T Consensus 152 ~~~~~i~ 158 (159)
T cd00154 152 ELFQSLA 158 (159)
T ss_pred HHHHHHh
Confidence 9999886
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=152.54 Aligned_cols=155 Identities=22% Similarity=0.326 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|+|||||++++.+..+.. ...+.++.......+ ......+.+||||| +..+..+ ...++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--~~~~~~~-------~~~~~~ 71 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAG--QERYHAL-------GPIYYR 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCc--hHHHHHh-------hHHHhc
Confidence 79999999999999999999887642 222222222222222 23345799999999 4333333 223467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.+++. +....++.........++|+++|+||+|+...... ......+....+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi 150 (162)
T cd04123 72 DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVG-AKHFETSAKTGKGI 150 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 899999999997654 22233333322222247899999999999753322 112222222233 47899999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++++++.+.+
T Consensus 151 ~~~~~~l~~~~ 161 (162)
T cd04123 151 EELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=158.40 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE---EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||++++++..+.. ..+..+..... ...+......+.+|||||. ..+..+ ...++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~ 71 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS--ERYEAM-------SRIYY 71 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHhhc
Confidence 79999999999999999999887642 22333332221 2223333456789999994 333333 22347
Q ss_pred cCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChh----hH-HHHHHHHHhcCCCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EI-AKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~-~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
..+|++++|+|.++... .... +...+.....+.|+++|+||+|+.... .+ ......+....+ .+++++||+
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 149 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKF-WVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSK 149 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHH-HHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 79999999999976542 2223 333333333579999999999986432 11 111222222233 478999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 018949 267 YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+++|++++.+.+.
T Consensus 150 ~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 150 TGQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999997663
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=155.61 Aligned_cols=156 Identities=20% Similarity=0.193 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|++|||||||++++.+..+.. .+..+....... .+......+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQ--EDYDRLR-------PLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCc--hhhhhcc-------cccc
Confidence 389999999999999999999877642 222222222222 23334467899999994 3322221 1346
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVD 258 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~ 258 (348)
..+|++++|+|.++.. ......+...++....+.|+++|+||+|+....... .....+....+..
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~ 150 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF 150 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc
Confidence 8999999999997643 222222333333323579999999999986532211 1112222333445
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhC
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
++++|||++|.|++++|+++.+.+
T Consensus 151 ~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEeccccCcCHHHHHHHHHHHh
Confidence 899999999999999999998654
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=158.73 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=104.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++++.++.. .+..++.......+...+ ..+.+|||||. ..+..+ ...++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--KYRRTVEEMHRKEYEVGGVSLTLDILDTSGS--YSFPAM-------RKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchhhheeEEEEECCEEEEEEEEECCCc--hhhhHH-------HHHHhh
Confidence 58999999999999999999877642 233333222222333333 67899999994 333322 223578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCCh-hhHHH-HHHHHHhcCCCCeEEEecCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP-GEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
.+|++++|+|+++.. +....++..+.... ..++|+++|+||+|+... ..+.. ............+++++||++|.
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 149 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNE 149 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCC
Confidence 999999999998653 22222222222211 157999999999999652 21111 11111111122478999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCC
Q 018949 270 GVEDIRDWILTKLPLGPAYY 289 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~ 289 (348)
|++++++++.+.+...++..
T Consensus 150 gv~~l~~~l~~~~~~~~~~~ 169 (198)
T cd04147 150 NVLEVFKELLRQANLPYNLS 169 (198)
T ss_pred CHHHHHHHHHHHhhcccccc
Confidence 99999999999887555543
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.9e-20 Score=153.21 Aligned_cols=161 Identities=19% Similarity=0.174 Sum_probs=118.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..||+++|..|||||.|+.++.+..+... ..+.|.--......+..+...+++|||+| |++++ ..+.++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG--QERFr-------tit~sy 78 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG--QERFR-------TITSSY 78 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc--cHHHh-------hhhHhh
Confidence 344899999999999999999999877521 11111111112233456667899999999 66655 446788
Q ss_pred ccCccEEEEEecCCCC--CchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.|++||+|+|.+.. +.....|+.+.-+....++|.++|+||+|+.+...+. +....+....+..+++++||+++.
T Consensus 79 YR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 79 YRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDST 158 (205)
T ss_pred ccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCcc
Confidence 9999999999999864 4666677666655555778999999999998765442 233456666666459999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|+++.|..|...+.
T Consensus 159 NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 159 NVEDAFLTLAKELK 172 (205)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887664
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=161.19 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=105.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|||||||+++|.+..+.. ...+......... .+......+.+||||| +..+..+ ...+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G--~~~~~~~-------~~~~ 81 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAG--QERYRAI-------TSAY 81 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCC--cHHHHHH-------HHHH
Confidence 3489999999999999999999887642 2222222222222 2334456899999999 4333332 3345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.++++|+|+|.++.. +....|+.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.
T Consensus 82 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~SA~~g~ 160 (216)
T PLN03110 82 YRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEG-LSFLETSALEAT 160 (216)
T ss_pred hCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 78999999999997644 23333333332222257999999999998653322 122333333333 589999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++++.|.+.+.
T Consensus 161 ~v~~lf~~l~~~i~ 174 (216)
T PLN03110 161 NVEKAFQTILLEIY 174 (216)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987663
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=150.10 Aligned_cols=157 Identities=26% Similarity=0.377 Sum_probs=106.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|+|||||++++.+.. ......+.++.......+..++ ..+.+|||||. ..+..+.......+...+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ--EDYRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc--ccchHHHHHHHhhhhEEE
Confidence 389999999999999999999988 4456667777777766555566 78999999994 344444444434444444
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
...|++++|+|...........+..... .+.|+++|+||+|+............+. ..+..+++++||++|.|+.+
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLKTHVAFLFA-KLNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhhHHHHHHHh-hccCCceEEeecCCCCCHHH
Confidence 4555555555554433233333333322 2789999999999986542222223333 33445799999999999999
Q ss_pred HHHHHH
Q 018949 274 IRDWIL 279 (348)
Q Consensus 274 L~~~i~ 279 (348)
++++|.
T Consensus 155 ~~~~l~ 160 (161)
T TIGR00231 155 AFKIVE 160 (161)
T ss_pred HHHHhh
Confidence 999874
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=153.75 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=102.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+. .....++....... +......+.+|||||. ..+..+.. .+++
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~ 71 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT--EQFTAMRE-------LYIK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCc--ccchhhhH-------HHHh
Confidence 7999999999999999999987753 22233333222222 3334467899999994 34443333 3367
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.++++++|+|.++.. +....+.....+. ...+.|+++|+||+|+...... ......+....+..+++++||++|.|
T Consensus 72 ~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~ 151 (168)
T cd04177 72 SGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN 151 (168)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCC
Confidence 899999999998643 2233322222211 1257999999999999754322 11222333334445899999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
++++++++.+.+
T Consensus 152 i~~~f~~i~~~~ 163 (168)
T cd04177 152 VDEVFIDLVRQI 163 (168)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=151.99 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=102.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|+|||||++++++..+. ....+++...... ..+.....+.+|||||. ..+... ...+++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~~-------~~~~~~ 70 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ--EDYAAI-------RDNYHR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCCh--hhhhHH-------HHHHhh
Confidence 7999999999999999999987654 2333333332222 23344577999999994 333322 334578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChh--hHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
.+|++++|+|.+++. .....++....+.. ..++|+++|+||+|+.... ..... ..+....+ .+++++||++|.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~-~~~~~~~~-~~~~~~Sa~~~~ 148 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEA-ANLARQWG-VPYVETSAKTRQ 148 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHH-HHHHHHhC-CeEEEeeCCCCC
Confidence 899999999987643 22334433333321 2579999999999997621 22222 22222233 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++.+.+.+
T Consensus 149 gi~~l~~~l~~~~ 161 (164)
T cd04139 149 NVEKAFYDLVREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=160.11 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+..+.. .+.+|..... ...++...+.+.+|||+| +..+..++. .++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G--~e~~~~l~~-------~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSG--SSYYDNVRP-------LAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCC--cHHHHHHhH-------Hhc
Confidence 379999999999999999999877642 2333322222 223344457799999999 444444432 347
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh------------H-HHHHHHHHhcCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVD 258 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~ 258 (348)
..+|++|+|+|.++.. ......|...++....+.|+|+|+||+|+..... + .+....+.+..+..
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~ 150 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV 150 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence 9999999999998764 3333334444444446799999999999964211 1 12334455556656
Q ss_pred eEEEecCCCCCC-HHHHHHHHHHhC
Q 018949 259 EVIPVSAKYGHG-VEDIRDWILTKL 282 (348)
Q Consensus 259 ~i~~vSA~~g~g-i~eL~~~i~~~l 282 (348)
++++|||+++.| |+++|..+....
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 899999999985 999999987754
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=152.40 Aligned_cols=157 Identities=19% Similarity=0.196 Sum_probs=102.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|||||||++++.+..+.. ...+..+.......+... ...+.+|||||. ..+.. ....+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~-------~~~~~ 76 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ--ERFRS-------ITQSY 76 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHH
Confidence 3589999999999999999998765431 122222222332223333 366889999994 22222 23345
Q ss_pred ccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|.++... ....++..+......+.|+++|+||+|+....++. .....+..... .+++++||++|.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~ 155 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLETSAKESD 155 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEeeCCCCC
Confidence 789999999999976532 22233322222122578999999999997544322 22333433333 579999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++.|.+.+
T Consensus 156 gv~~l~~~i~~~~ 168 (169)
T cd04114 156 NVEKLFLDLACRL 168 (169)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998753
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=155.27 Aligned_cols=152 Identities=19% Similarity=0.224 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|+|||||++++.+..+. ..+..|..+..... ++.....+.+|||||. ..+..+. ..+++
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ--DEFDKLR-------PLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCC--hhhcccc-------ccccC
Confidence 7999999999999999999887654 33444443333222 3333467889999994 3333332 23478
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh------------H-HHHHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~~ 259 (348)
.+|++|+|+|.++.. ......|...+.....+.|+++|+||+|+..... + .+....+....+..+
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 150 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence 999999999998754 2333333433333235799999999999864321 1 112233344445568
Q ss_pred EEEecCCCCCCHHHHHHHHH
Q 018949 260 VIPVSAKYGHGVEDIRDWIL 279 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~ 279 (348)
++++||++|.|++++++.+.
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999875
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=149.64 Aligned_cols=140 Identities=17% Similarity=0.211 Sum_probs=91.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|||||||+|++.+..+. ... |.. +... -.+|||||... .. ..........++.+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~~-----~~~~---~~~iDt~G~~~----~~-~~~~~~~~~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQA-----VEYN---DGAIDTPGEYV----EN-RRLYSALIVTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-cee-----EEEc---CeeecCchhhh----hh-HHHHHHHHHHhhcC
Confidence 7999999999999999999987653 111 111 1111 26899999521 11 11122233457899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|++++.......+... ...|+++|+||+|+.+.....+....+....+..+++++||++|.|++++++
T Consensus 64 d~vilv~d~~~~~s~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 64 DVIALVQSATDPESRFPPGFASI-----FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred CEEEEEecCCCCCcCCChhHHHh-----ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999987764433333332 1349999999999975322122222222233444789999999999999999
Q ss_pred HHH
Q 018949 277 WIL 279 (348)
Q Consensus 277 ~i~ 279 (348)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=150.85 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=104.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++++..+. .....++.......+... ...+.+||+||. ..+..+ ....++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV--EEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ--EEFSAM-------RDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--cCcCCChhHeEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHHh
Confidence 5899999999999999999987743 444555544444444443 467899999994 222222 223467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++++|+|.++.. .....++........ .+.|+++|+||+|+...... .+....+....+ .+++++||+++.|
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 148 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSAKDNIN 148 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEeccCCCCC
Confidence 899999999997654 223333333333221 47999999999999863221 122222323223 5899999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++++++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (160)
T cd00876 149 IDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=154.92 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=103.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE-eE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~-~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..+|+++|.+|||||||++++++..+. +..+.+|+.. .. ...+......+.+||++|. ..+..+ ...
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~-------~~~ 73 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED--EVAILL-------NDA 73 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCc--cccccc-------chh
Confidence 448999999999999999999998764 1233333322 11 1223334467899999994 333322 223
Q ss_pred hccCccEEEEEecCCCCCchHH-HHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 192 AGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.... ......+....+...++++||++|.
T Consensus 74 ~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred hhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence 4689999999999977532111 1222222221 47999999999999643321 1112333344444456999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++++.+.+.+.
T Consensus 153 ~v~~lf~~l~~~~~ 166 (169)
T cd01892 153 SSNELFTKLATAAQ 166 (169)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999999988764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=148.51 Aligned_cols=158 Identities=32% Similarity=0.369 Sum_probs=114.9
Q ss_pred EEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccE
Q 018949 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~ 198 (348)
++|++|+|||||+|++.+.........+++|........... ...+.+|||||+.... .........+...+..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~--~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG--GLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc--cchhhHHHHHHHHHHhCCE
Confidence 589999999999999999877656677777777666555543 6789999999975432 2222222344456789999
Q ss_pred EEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH---HHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL---EWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 199 iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+++|+|++.........+...... .+.|+++|+||+|+.......... ..........+++++||+++.|+++++
T Consensus 79 il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 999999998775555443333333 689999999999998765544332 223334455689999999999999999
Q ss_pred HHHHHh
Q 018949 276 DWILTK 281 (348)
Q Consensus 276 ~~i~~~ 281 (348)
+++.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 999865
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-19 Score=151.54 Aligned_cols=157 Identities=21% Similarity=0.230 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|++|||||||++++++..+.. ...+......... .+......+.+|||||. ..+.. .....++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~------~~~~~~~ 73 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQ--ERFRK------SMVQHYY 73 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCCh--HHHHH------hhHHHhh
Confidence 489999999999999999999876532 1122222222222 23344578999999994 32221 1123447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC--
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY-- 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~-- 267 (348)
+.+|++++|+|++++. .....++...... ...+.|+++|+||+|+.....+ ......+..... .+++++||++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 152 (170)
T cd04115 74 RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS-MPLFETSAKDPS 152 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcC-CcEEEEeccCCc
Confidence 8999999999998654 3333333222221 1257999999999998754332 122333333333 5899999999
Q ss_pred -CCCHHHHHHHHHHhC
Q 018949 268 -GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 -g~gi~eL~~~i~~~l 282 (348)
+.|++++|..+.+.+
T Consensus 153 ~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 153 ENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 899999999998765
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=160.73 Aligned_cols=154 Identities=19% Similarity=0.268 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++++..+.. .+.+|+.+.....+. ...+.+.+|||+|. ..+..+. ..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~--~~~~~~~-------~~~~~ 70 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGN--HPFPAMR-------RLSIL 70 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCC--hhhhHHH-------HHHhc
Confidence 79999999999999999999877642 333343333333333 33467899999994 3333332 22467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccc---------ccCCCCEEEEEeccCCCChhh--HHHHHHHHHhcCCCCeEE
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGD---------HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~---------~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~ 261 (348)
.+|++|+|+|.++.. +....++..+... ...+.|+|+|+||+|+....+ ..+..+.+.. ....+++
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~-~~~~~~~ 149 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG-DENCAYF 149 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh-cCCCEEE
Confidence 899999999998653 2233333232211 125789999999999974221 2222222222 2235799
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
++||++|.|+++++++|.+.+
T Consensus 150 evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999865
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=154.26 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=100.1
Q ss_pred EcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEE
Q 018949 121 LGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (348)
Q Consensus 121 ~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~i 199 (348)
+|.+|||||||+++++...+.. ..++.+.+.......++.....+.+||||| +..+..+ ...+++.+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G--~e~~~~l-------~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAG--QEKFGGL-------RDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCC--chhhhhh-------hHHHhcCCCEE
Confidence 6999999999999999766532 112222222222223344567899999999 4444433 33458899999
Q ss_pred EEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHH
Q 018949 200 VVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (348)
Q Consensus 200 v~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~ 277 (348)
|+|+|+++.. .....| ...+.....+.|+++|+||+|+.......+.. .+....+ .++++|||++|.|++++|.+
T Consensus 72 ilV~D~t~~~S~~~i~~w-~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~-~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 72 IIMFDVTARVTYKNVPNW-HRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKN-LQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEEEECCChHHHHHHHHH-HHHHHHhCCCCCEEEEEECcccccccCCHHHH-HHHHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 9999998764 333333 33333333679999999999986432111222 2222233 47999999999999999999
Q ss_pred HHHhCC
Q 018949 278 ILTKLP 283 (348)
Q Consensus 278 i~~~l~ 283 (348)
|.+.+.
T Consensus 149 l~~~i~ 154 (200)
T smart00176 149 LARKLI 154 (200)
T ss_pred HHHHHH
Confidence 997664
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-19 Score=150.23 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++.+.......++.+.+ ...+..++..+.+|||||. ..+. ..+..++..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~--~~~~-------~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGG--ANFR-------GIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCc--HHHH-------HHHHHHHcCC
Confidence 4899999999999999999986322222333332 2334556788999999994 3222 2345668999
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH--h---c-CCCCeEEEecCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--K---F-TDVDEVIPVSAKY 267 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~---~-~~~~~i~~vSA~~ 267 (348)
|++|+|+|+++.. .....++...++.. ..++|+++|+||+|+.......+....+. . . ...+++++|||++
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 9999999998754 33333444443331 15789999999999976543333322211 1 1 1234788899999
Q ss_pred C------CCHHHHHHHHHH
Q 018949 268 G------HGVEDIRDWILT 280 (348)
Q Consensus 268 g------~gi~eL~~~i~~ 280 (348)
| .|+++.++||..
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999964
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=150.07 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=98.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|+|||||+|+|.|.... . ..|... .+... .+|||||..... ..+.......+..+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~v---~~~~~----~~iDtpG~~~~~-----~~~~~~~~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQAV---EFNDK----GDIDTPGEYFSH-----PRWYHALITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceEE---EECCC----CcccCCccccCC-----HHHHHHHHHHHhcC
Confidence 7999999999999999999886421 1 122211 11111 269999963221 11223334457899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|++........++... ..+.|+++++||+|+.... .......+.......|++++||++|+|+++|++
T Consensus 66 d~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 66 DMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred CEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999999987654444444332 1467999999999986532 333333333333335899999999999999999
Q ss_pred HHHHhCCC
Q 018949 277 WILTKLPL 284 (348)
Q Consensus 277 ~i~~~l~~ 284 (348)
++.+.+..
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99987753
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-19 Score=149.64 Aligned_cols=155 Identities=21% Similarity=0.329 Sum_probs=103.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|++|||||||++++.+..+....++.+.+. ..+...+..+.+|||||.. .+. ..+..+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~--~~~-------~~~~~~ 78 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQR--AIR-------PYWRNY 78 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCH--HHH-------HHHHHH
Confidence 346689999999999999999999976543333333222 2334456889999999942 211 223345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAK 266 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~ 266 (348)
+..+|++++|+|+++.. .....++...++.. ..++|+++++||+|+............+... ....+++++||+
T Consensus 79 ~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 79 FENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECC
Confidence 78999999999998643 22223333333221 1569999999999997654333333332211 112357899999
Q ss_pred CCCCHHHHHHHHHH
Q 018949 267 YGHGVEDIRDWILT 280 (348)
Q Consensus 267 ~g~gi~eL~~~i~~ 280 (348)
+|+|+++++++|.+
T Consensus 159 ~~~gi~~~~~~l~~ 172 (173)
T cd04155 159 TGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999975
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=153.61 Aligned_cols=146 Identities=19% Similarity=0.207 Sum_probs=96.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC--ceeee-------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ--KLSIV-------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~--~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+|+++|.+|+|||||++++++. .+... ....++|.......+..++..+.+|||||+. .+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~--~~~-- 79 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA--DFG-- 79 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH--HHH--
Confidence 7999999999999999999863 22110 0123444444445566678899999999953 222
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh---HHHHHHHHHhc----
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKF---- 254 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~~---- 254 (348)
..+..+++.+|++++|+|++++.......+...... .++|+++|+||+|+..... ..+....+...
T Consensus 80 -----~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (194)
T cd01891 80 -----GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATE 152 (194)
T ss_pred -----HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 234456789999999999988664444444444433 5789999999999964321 12222222211
Q ss_pred -CCCCeEEEecCCCCCCHHH
Q 018949 255 -TDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 255 -~~~~~i~~vSA~~g~gi~e 273 (348)
....+++++||++|.|+.+
T Consensus 153 ~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 153 EQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred ccCccCEEEeehhccccccc
Confidence 1134899999999977643
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.81 E-value=9e-19 Score=153.96 Aligned_cols=160 Identities=24% Similarity=0.330 Sum_probs=100.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee--eecCCCCceEEeEE---EE------------------------EeC------C
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRIL---GI------------------------CSG------P 161 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~~t~~~~~---~~------------------------~~~------~ 161 (348)
+|+++|+.|+|||||+.++.+.... ......+.|..... .. ... .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 6999999999999999999764210 00000011110000 00 000 1
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-CchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
...+.+|||||+. .+...+...+..+|++++|+|++.+ ........+..+... ...|+++|+||+|+..
T Consensus 82 ~~~i~~iDtPG~~---------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 82 VRHVSFVDCPGHE---------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVK 151 (203)
T ss_pred ccEEEEEECCChH---------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccC
Confidence 2679999999942 1344566667899999999999874 332222233333331 2357999999999987
Q ss_pred hhhHHHHHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 018949 241 PGEIAKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (348)
Q Consensus 241 ~~~~~~~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (348)
..........+.... ...+++++||++|+|+++|+++|.+.++.++
T Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 152 EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 544433333332221 2357999999999999999999999887643
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-19 Score=152.32 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=99.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCce--EEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||+++++...+. ..++.++ .......++.....+.+|||||....... ....+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--------QLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--------hHHHHHH
Confidence 4899999999999999999876653 2233333 22222233444567899999995321111 1223467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
.+|++|+|+|+++.. .....+ ...+... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 148 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQL-KQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAAED 148 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCCCC
Confidence 899999999998754 222222 2222221 2579999999999986432221 12223333334 48999999999
Q ss_pred -CCHHHHHHHHHHhC
Q 018949 269 -HGVEDIRDWILTKL 282 (348)
Q Consensus 269 -~gi~eL~~~i~~~l 282 (348)
.|++++|..+.+.+
T Consensus 149 ~~~v~~~f~~l~~~~ 163 (165)
T cd04146 149 YDGVHSVFHELCREV 163 (165)
T ss_pred chhHHHHHHHHHHHH
Confidence 59999999998765
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-19 Score=156.53 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe---CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+|+++|.+|||||||++++.+.++.... .+..+.+.....+. .....+.+|||||. ..+..+ ...+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 72 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ--ERFRSI-------TRSY 72 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcc--hhHHHH-------HHHH
Confidence 48999999999999999999988765322 22222232222222 23467999999994 333322 3345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++.+|++|+|+|.++.. .....++........ ...|+++|+||+|+.....+ ......+.+..+ .+++++||++|
T Consensus 73 ~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g 151 (211)
T cd04111 73 YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSARTG 151 (211)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCCCC
Confidence 78999999999998753 333344443332221 35778999999999754322 222334444444 58999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 152 ~~v~e~f~~l~~~~~ 166 (211)
T cd04111 152 DNVEEAFELLTQEIY 166 (211)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=164.25 Aligned_cols=164 Identities=30% Similarity=0.334 Sum_probs=123.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+.|+++|++|+|||||+|+|.+.... +.+...+|.++....+... +..+.+-||-|+++.-++.+-..|. .++...
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFk-sTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFK-STLEEV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHH-HHHHHh
Confidence 448999999999999999999987765 5677778877766655544 6889999999999877777766663 445667
Q ss_pred cCccEEEEEecCCCCC-chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 194 INADCIVVLVDACKAP-ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
..+|++++|+|++++. ..........+.+.+ ...|+|+|+||+|+...... ...+....+ ..+++||++|.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~--~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSP--NPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCC--CeEEEEeccCcCH
Confidence 8999999999999875 222333444444432 56899999999998865542 222222222 5799999999999
Q ss_pred HHHHHHHHHhCCCC
Q 018949 272 EDIRDWILTKLPLG 285 (348)
Q Consensus 272 ~eL~~~i~~~l~~~ 285 (348)
+.|++.|.+.+...
T Consensus 345 ~~L~~~i~~~l~~~ 358 (411)
T COG2262 345 DLLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988753
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-19 Score=182.07 Aligned_cols=162 Identities=25% Similarity=0.317 Sum_probs=121.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh----hhhHHHHHHHHH
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNVR 190 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~l~~~~~~~~~ 190 (348)
..+|+++|+||||||||+|++.|.+.. +.+.+++|.+...+.+..++..+.++||||+.+... ...+.......
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~- 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY- 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH-
Confidence 458999999999999999999998764 788999999998888888889999999999754221 12222222211
Q ss_pred hhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.....+|++++|+|+++...... +...+.+ .++|+++|+||+|+.+........+.+.+..+. |++++||++|+|
T Consensus 81 l~~~~aD~vI~VvDat~ler~l~--l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~-pVvpiSA~~g~G 155 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNLY--LTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGC-PVIPLVSTRGRG 155 (772)
T ss_pred HhccCCCEEEEEecCCcchhhHH--HHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCC-CEEEEEeecCCC
Confidence 12358999999999987544322 3334444 679999999999987554444444555555554 899999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
++++++.+.+...
T Consensus 156 IdeL~~~I~~~~~ 168 (772)
T PRK09554 156 IEALKLAIDRHQA 168 (772)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987653
|
|
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=150.53 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=103.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCce------e---------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKL------S---------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+|+++|++++|||||+++|++... . ......++|.......+..++..+.++||||+.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 3799999999999999999985310 0 0112456666666666677788999999999532
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHH-HH----HHHHhc
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-KL----EWYEKF 254 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~-~~----~~~~~~ 254 (348)
+...+...+..+|++++|+|+..+...+...+...+.. .++| +|+|+||+|+....+..+ .. ..+...
T Consensus 78 ----~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 78 ----YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred ----HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 34455666789999999999998887777777777766 5677 779999999975333221 21 222221
Q ss_pred C---CCCeEEEecCCCCCCH
Q 018949 255 T---DVDEVIPVSAKYGHGV 271 (348)
Q Consensus 255 ~---~~~~i~~vSA~~g~gi 271 (348)
. ...+++++||++|.|+
T Consensus 152 g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred cccccCCeEEEeeCccccCC
Confidence 1 2368999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-19 Score=149.98 Aligned_cols=149 Identities=16% Similarity=0.164 Sum_probs=100.9
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCcc
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad 197 (348)
|+++|.+|||||||++++.+..+. ..+..|.... ...+...+..+.+|||||. ..+..+ +..+++.+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVVPTTGFN-SVAIPTQDAIMELLEIGGS--QNLRKY-------WKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--ccccccCCcc-eEEEeeCCeEEEEEECCCC--cchhHH-------HHHHHhhCC
Confidence 799999999999999999987653 1222222111 2334566788999999994 333322 334578999
Q ss_pred EEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH-----HHHHhcCCCCeEEEecCCC---
Q 018949 198 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-----EWYEKFTDVDEVIPVSAKY--- 267 (348)
Q Consensus 198 ~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-----~~~~~~~~~~~i~~vSA~~--- 267 (348)
++|+|+|+++.. .....++....... .++|+++|+||+|+.......... ..+.... .++++++||++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~Sa~~~~s 147 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGR-RWILQGTSLDDDGS 147 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCC-ceEEEEeeecCCCC
Confidence 999999998754 33334444444332 679999999999997654433322 2222222 24678888888
Q ss_pred ---CCCHHHHHHHHHH
Q 018949 268 ---GHGVEDIRDWILT 280 (348)
Q Consensus 268 ---g~gi~eL~~~i~~ 280 (348)
++|++++|+.+..
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-19 Score=156.59 Aligned_cols=155 Identities=24% Similarity=0.281 Sum_probs=100.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee-eecCCCCc-eEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~~-t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+. .....+.. ........+......+.+|||||.. ..+.. .++.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~----~~~~~-------~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE----MWTED-------SCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc----hHHHh-------HHhh
Confidence 7999999999999999999876653 11111111 1222223344456789999999953 11111 1234
Q ss_pred -CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 195 -NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 195 -~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
.+|++++|+|+++.. .....++..+.... ..+.|+|+|+||+|+.....+. +....+....+ ++++++||++|.
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~SA~~~~ 149 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFD-CKFIETSAGLQH 149 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 899999999998754 22233333222211 1579999999999997543321 11223333333 478999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++++++.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (221)
T cd04148 150 NVDELLEGIVRQIR 163 (221)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998774
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-19 Score=154.54 Aligned_cols=158 Identities=20% Similarity=0.190 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|++|+|||||++++.+..+.... ++.+.+.......+......+.+|||||. ..+..+ ...++.
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~--~~~~~~-------~~~~~~ 77 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ--ESFRSI-------TRSYYR 77 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHHHhc
Confidence 48999999999999999999987765321 11122221222223333467889999994 333222 334567
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++|+|+|+++.. .....++.........+.|+++|+||+|+...... ......+....+ .+++++||+++.|+
T Consensus 78 ~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 156 (210)
T PLN03108 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNV 156 (210)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 899999999998754 22333433333222257899999999999753221 112222333333 48999999999999
Q ss_pred HHHHHHHHHhCC
Q 018949 272 EDIRDWILTKLP 283 (348)
Q Consensus 272 ~eL~~~i~~~l~ 283 (348)
+++|.++.+.+.
T Consensus 157 ~e~f~~l~~~~~ 168 (210)
T PLN03108 157 EEAFIKTAAKIY 168 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=174.19 Aligned_cols=156 Identities=21% Similarity=0.288 Sum_probs=111.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.|.++|+++|++|+|||||+++|.+..+.. ...++.|.+.....+...+ ..+.+|||||+ ..+..+ ...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh--e~F~~~-------r~r 154 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGH--EAFTSM-------RAR 154 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCC--cchhhH-------HHh
Confidence 367799999999999999999999887653 3455666665544444433 38999999995 344333 224
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh--hhHHHHHHHHH----hcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYE----KFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~----~~~~~~~i~~vSA 265 (348)
.+..+|++++|+|++++...+........+. .++|+++++||+|+... ..+...+.... ...+..+++++||
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSA 232 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSA 232 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEEC
Confidence 4689999999999988776655555555554 67999999999999643 22222221111 1222357999999
Q ss_pred CCCCCHHHHHHHHHH
Q 018949 266 KYGHGVEDIRDWILT 280 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~ 280 (348)
++|.|+++|+++|..
T Consensus 233 ktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 233 LTGDGIDELLDMILL 247 (587)
T ss_pred CCCCChHHHHHhhhh
Confidence 999999999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=165.69 Aligned_cols=190 Identities=25% Similarity=0.327 Sum_probs=135.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe------------------------CCCeeEEEEeCCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------------GPEYQMILYDTPG 172 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~l~DtpG 172 (348)
+|+|+|.||||||||+|+|++.... +++++++|..+..+... ....++.++||||
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 7999999999999999999998764 57889999888776533 1225689999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC--------------C-chH-------HH---------------H
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA--------------P-ERI-------DE---------------I 215 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~--------------~-~~~-------~~---------------~ 215 (348)
+...... ...+...++..++.||++++|+|+... + ... .. .
T Consensus 82 l~~ga~~--g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~ 159 (396)
T PRK09602 82 LVPGAHE--GRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK 159 (396)
T ss_pred cCCCccc--hhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8653321 122334566678999999999999621 0 000 00 0
Q ss_pred -------------------------HHHhccc----------------------ccCCCCEEEEEeccCCCChhhHHHHH
Q 018949 216 -------------------------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGEIAKKL 248 (348)
Q Consensus 216 -------------------------~~~~~~~----------------------~~~~~p~ivv~NK~Dl~~~~~~~~~~ 248 (348)
+...+.. +...+|+|+|+||+|+...... .
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~---l 236 (396)
T PRK09602 160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN---I 236 (396)
T ss_pred HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH---H
Confidence 1111110 1135899999999998643321 1
Q ss_pred HHHHhcCCCCeEEEecCCCCCCHHH-HHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhcc
Q 018949 249 EWYEKFTDVDEVIPVSAKYGHGVED-IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYR 316 (348)
Q Consensus 249 ~~~~~~~~~~~i~~vSA~~g~gi~e-L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~ 316 (348)
..+... +...++++||+.+.|+++ +.+.+.+.++.++++++.+..++++.+ +.|++| +++..+.
T Consensus 237 ~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g 301 (396)
T PRK09602 237 ERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYG 301 (396)
T ss_pred HHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhC
Confidence 222222 455799999999999999 899999999999999999999988887 778888 6666544
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=149.06 Aligned_cols=156 Identities=26% Similarity=0.353 Sum_probs=110.2
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|..|+||||+++++.......+.++.+ .....+...+..+.+||.+| +.....+ +..+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g----~~~~~i~~~~~~~~~~d~gG--~~~~~~~-------w~~y 78 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG----FNIEEIKYKGYSLTIWDLGG--QESFRPL-------WKSY 78 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS----EEEEEEEETTEEEEEEEESS--SGGGGGG-------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccc----cccceeeeCcEEEEEEeccc--ccccccc-------ceee
Confidence 356699999999999999999999876553333322 33334556788999999999 4443333 3455
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH--hc--CCCCeEEEecC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVSA 265 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~~--~~~~~i~~vSA 265 (348)
+..+|++|||+|+++.. .+....+...+... ..++|++|++||+|+.+.....+....+. .. .....++.|||
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeec
Confidence 78999999999998653 33344444444431 26799999999999986544333333222 11 23457899999
Q ss_pred CCCCCHHHHHHHHHHh
Q 018949 266 KYGHGVEDIRDWILTK 281 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~ 281 (348)
.+|+|+.+.++||.+.
T Consensus 159 ~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTTBTHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhc
Confidence 9999999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-19 Score=179.09 Aligned_cols=157 Identities=20% Similarity=0.267 Sum_probs=114.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..|.+.|+|+|++|+|||||+++|.+..+. .....+.|.+.....+.+++..+++|||||+. .+..+ ...
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe--~F~~m-------~~r 356 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHE--AFTAM-------RAR 356 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCc--cchhH-------HHh
Confidence 357889999999999999999999887664 33455666665555566667889999999953 33333 224
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHH----HhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~i~~vSA 265 (348)
.+..+|++|+|+|++++...+....+..... .++|+|||+||+|+.... .+...+... ....+..+++++||
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 4678999999999998876666555555555 679999999999997532 221111111 11223468999999
Q ss_pred CCCCCHHHHHHHHHH
Q 018949 266 KYGHGVEDIRDWILT 280 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~ 280 (348)
++|.|+++|+++|..
T Consensus 435 ktG~GI~eLle~I~~ 449 (787)
T PRK05306 435 KTGEGIDELLEAILL 449 (787)
T ss_pred CCCCCchHHHHhhhh
Confidence 999999999999874
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-19 Score=147.75 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=97.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe-EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||+.+++...+... .+.+.... ....+......+.+|||+|.. . ..++..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~--~------------~~~~~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL--ESPEGGRFKKEVLVDGQSHLLLIRDEGGAP--D------------AQFASW 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC--CCCCccceEEEEEECCEEEEEEEEECCCCC--c------------hhHHhc
Confidence 799999999999999999987765422 12111111 112222333668999999952 1 122467
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCC--hhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK--PGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~--~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+|++++|+|.++.. +....++....... ..+.|+++|+||+|+.. ..++. .....+.+..+.+++++|||++|.
T Consensus 66 ~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 66 VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 99999999998765 33334433333221 15689999999999852 22222 222334333344589999999999
Q ss_pred CHHHHHHHHHHh
Q 018949 270 GVEDIRDWILTK 281 (348)
Q Consensus 270 gi~eL~~~i~~~ 281 (348)
|++++|..+.+.
T Consensus 146 ~i~~~f~~~~~~ 157 (158)
T cd04103 146 NVERVFQEAAQK 157 (158)
T ss_pred CHHHHHHHHHhh
Confidence 999999998864
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=144.09 Aligned_cols=151 Identities=21% Similarity=0.304 Sum_probs=100.2
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCcc
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad 197 (348)
|+++|++|||||||+|++.+.++.. ...+ ++.... ..+..++..+.+|||||. ..+. ..+..++..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~-t~~~~~-~~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIP-TVGFNM-RKVTKGNVTLKVWDLGGQ--PRFR-------SMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccC-CCCcce-EEEEECCEEEEEEECCCC--HhHH-------HHHHHHHhcCC
Confidence 8999999999999999999987642 2222 222211 223445588999999994 2222 22344578999
Q ss_pred EEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCCCCH
Q 018949 198 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 198 ~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~gi 271 (348)
++++|+|++... .....++....... ..++|+++|+||+|+.+..........+.. .....+++++||++|.|+
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 999999997643 22223334333321 157899999999998765443333333221 112247899999999999
Q ss_pred HHHHHHHHH
Q 018949 272 EDIRDWILT 280 (348)
Q Consensus 272 ~eL~~~i~~ 280 (348)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=154.95 Aligned_cols=155 Identities=30% Similarity=0.392 Sum_probs=112.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|+|||||+|+|.+.... +...+++|.....+.+..++..+.+|||||+....... ..........++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG--KGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEEECCeEEEEEECCCcccccccc--hhHHHHHHHhhccC
Confidence 7999999999999999999998744 56788899888888887888999999999975432111 12223445678999
Q ss_pred cEEEEEecCCCCCchHHHHHHHhc--------------------------------------------ccc---------
Q 018949 197 DCIVVLVDACKAPERIDEILEEGV--------------------------------------------GDH--------- 223 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~--------------------------------------------~~~--------- 223 (348)
|++++|+|+++...... .+...+ ++.
T Consensus 79 d~il~V~D~t~~~~~~~-~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 79 DLILMVLDATKPEGHRE-ILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CEEEEEecCCcchhHHH-HHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 99999999876432111 111111 110
Q ss_pred ----------------cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 224 ----------------KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 224 ----------------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
...+|+++|+||+|+.+..+... +.. ..+++++||++|.|+++|++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR---QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc---CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 12368999999999987665442 222 23589999999999999999998865
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=149.67 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++++..+. ....+++......... ...+.+.+|||||.. .+..+ ...++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~--~~~~~-------~~~~~~ 71 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD--EYSIL-------PQKYSI 71 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChH--hhHHH-------HHHHHh
Confidence 7999999999999999999987653 2233333222222222 234568999999953 33222 223467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.++++++|+|.++.. +....++...++.. ..+.|+++|+||+|+....... .....+....+ .+++++||++|.|
T Consensus 72 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 150 (180)
T cd04137 72 GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARENEN 150 (180)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 899999999998643 33333333333322 1568999999999987432221 11222233333 4789999999999
Q ss_pred HHHHHHHHHHhCCC
Q 018949 271 VEDIRDWILTKLPL 284 (348)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (348)
+.+++.++.+.+..
T Consensus 151 v~~l~~~l~~~~~~ 164 (180)
T cd04137 151 VEEAFELLIEEIEK 164 (180)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=171.29 Aligned_cols=164 Identities=27% Similarity=0.310 Sum_probs=129.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.||||||||.|++.|.+.. +.+.||.|.+...+.+..++..+.++|.||...-...+.+....+.+.. -..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cCC
Confidence 36999999999999999999999876 7999999999999999999999999999998765545555554444332 257
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++|.|+|+++-.....- .. ++.+ .++|+++++|++|.....-+.-..+.+.+..+. |++++||++|.|+++++
T Consensus 82 ~D~ivnVvDAtnLeRnLyl-tl-QLlE--~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv-PVv~tvA~~g~G~~~l~ 156 (653)
T COG0370 82 PDLIVNVVDATNLERNLYL-TL-QLLE--LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV-PVVPTVAKRGEGLEELK 156 (653)
T ss_pred CCEEEEEcccchHHHHHHH-HH-HHHH--cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC-CEEEEEeecCCCHHHHH
Confidence 8999999999875544332 22 2333 689999999999987654444344556666665 99999999999999999
Q ss_pred HHHHHhCCCCC
Q 018949 276 DWILTKLPLGP 286 (348)
Q Consensus 276 ~~i~~~l~~~~ 286 (348)
..+.+..+...
T Consensus 157 ~~i~~~~~~~~ 167 (653)
T COG0370 157 RAIIELAESKT 167 (653)
T ss_pred HHHHHhccccc
Confidence 99998776544
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-19 Score=154.76 Aligned_cols=147 Identities=24% Similarity=0.224 Sum_probs=100.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec------------------------------CCCCceEEeEEEEEeCCCeeEE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEYQMI 166 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~ 166 (348)
+|+|+|++|+|||||+++|++....+.. ...++|.+.....+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999865433221 1256677777777777888999
Q ss_pred EEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCC-CCEEEEEeccCCCChhh--
Q 018949 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGE-- 243 (348)
Q Consensus 167 l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~NK~Dl~~~~~-- 243 (348)
+|||||+.+ + ...+...+..+|++++|+|++.+...........+.. .+ .++|+|+||+|+.....
T Consensus 81 liDTpG~~~--~-------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 81 IADTPGHEQ--Y-------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL--LGIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred EEECCcHHH--H-------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCCcEEEEEEchhcccCCHHH
Confidence 999999522 1 1223445789999999999998775555444444444 33 45788999999975221
Q ss_pred HHH---HHHHHHhcCC--CCeEEEecCCCCCCHHHH
Q 018949 244 IAK---KLEWYEKFTD--VDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 244 ~~~---~~~~~~~~~~--~~~i~~vSA~~g~gi~eL 274 (348)
... ....+....+ ..+++++||++|.|+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 112 2222222233 246999999999999853
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=147.28 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=114.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCc-eEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~-t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+|+++|.+|||||+++-++....+.. ....| -.+... ..++.....+++|||+| |+.+..+ +.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~--~~~sTiGIDFk~kti~l~g~~i~lQiWDtaG--Qerf~ti-------~~ 79 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNT--SFISTIGIDFKIKTIELDGKKIKLQIWDTAG--QERFRTI-------TT 79 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcC--CccceEEEEEEEEEEEeCCeEEEEEEEEccc--chhHHHH-------HH
Confidence 45589999999999999999999888752 22211 122222 23445567899999999 6665543 66
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.|++.|+++++|+|.++.. +.... |...+.+. ..++|.++|+||+|+...+.+ .+..+.+....+. +++++||+
T Consensus 80 sYyrgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~EtSAk 157 (207)
T KOG0078|consen 80 AYYRGAMGILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFETSAK 157 (207)
T ss_pred HHHhhcCeeEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-eEEEcccc
Confidence 7789999999999998754 44445 44444443 358999999999999875443 3344555555555 89999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.||++.|-.+.+.+..
T Consensus 158 ~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999887653
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=150.18 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=101.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++....+.. ....+........ +......+.+|||||. ..+..... ..+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~~-------~~~~ 71 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQ--EEYERLRP-------LSYS 71 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCC--hhccccch-------hhcC
Confidence 79999999999999999998655432 1222222222222 2333456889999994 23222211 2367
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChh----------hH-HHHHHHHHhcCCCCeEE
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------EI-AKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----------~~-~~~~~~~~~~~~~~~i~ 261 (348)
.+|++++|+|.++.. ......|...++....+.|+++|+||+|+.... .. ......+....+..+++
T Consensus 72 ~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 899999999987644 233233444433333579999999999985321 00 11233344445556899
Q ss_pred EecCCCCCCHHHHHHHHHHhCCC
Q 018949 262 PVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+|||++|.|++++|+++.+.+..
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999976643
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=150.59 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCChHHHHH-HHhCCcee---eecCCCCceE--EeE--E--------EEEeCCCeeEEEEeCCCCchhhhh
Q 018949 116 GYVAVLGKPNVGKSTLAN-QMIGQKLS---IVTNKPQTTR--HRI--L--------GICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin-~l~~~~~~---~~~~~~~~t~--~~~--~--------~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
.+|+++|.+|||||||+. ++.+..+. ....+.+|.. +.. . ..++...+.+.+|||+|..+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 389999999999999996 55443321 0112222221 111 1 12445567899999999521
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh----------------
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---------------- 241 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~---------------- 241 (348)
.+ ...+++.+|++|+|+|.++.. ......|...++....+.|+++|+||+|+...
T Consensus 79 ~~-------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~ 151 (195)
T cd01873 79 KD-------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPI 151 (195)
T ss_pred hh-------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccccccc
Confidence 11 123578999999999998754 33322343433333357899999999998631
Q ss_pred ---hhH-HHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 242 ---GEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 242 ---~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
..+ .+....+.+..+. ++++|||++|.|++++|+.+.+.
T Consensus 152 ~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 152 KNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 111 2233444455554 89999999999999999998864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=138.65 Aligned_cols=116 Identities=38% Similarity=0.522 Sum_probs=90.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|+|||||+|+|++.+...++..+++|+......+...+..+.++||||+.+.............+...+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 59999999999999999999987777889999999987777777888899999999865433322222344566667999
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEec
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 235 (348)
|+++||+|++.........+...++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999999987744444555555553 67999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=145.23 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCC-CCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.++.++|..|||||+|+.++..+.+..+.+. .|..-......++....++++|||+| ++.+.++ +.++++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG--qe~frsv-------~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG--QESFRSV-------TRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC--cHHHHHH-------HHHHhc
Confidence 3899999999999999999999998755431 12222222334667788999999999 6555544 556789
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-HHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+-++++|+|.+... ..+..|+....+....+.-+++++||+||...+++.+ ..+.+.+.-++ .++++||++++|+
T Consensus 78 ~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmETSakt~~~V 156 (216)
T KOG0098|consen 78 GAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMETSAKTAENV 156 (216)
T ss_pred cCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeehhhhhhhhhH
Confidence 999999999998644 6666777766655457888999999999987665533 33444444444 6789999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
++.|..+...+
T Consensus 157 EEaF~nta~~I 167 (216)
T KOG0098|consen 157 EEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHH
Confidence 99998766544
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=141.00 Aligned_cols=160 Identities=28% Similarity=0.383 Sum_probs=106.8
Q ss_pred EEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-hhhHH---HHHHHHHhh
Q 018949 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDS---MMMKNVRSA 192 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~l~~---~~~~~~~~~ 192 (348)
|+++|.+|+|||||+|++.+.. ....+.++++|........ + ..+.+|||||+..... ..... .....+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999543 3335566666655433222 2 2799999999754211 00111 112222233
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh----cCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK----FTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~i~~vSA~~g 268 (348)
...++++++|+|...........+...+.. .+.|+++|+||+|+............... .....+++++||+++
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKG 156 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCC
Confidence 356789999999987665555555566655 56899999999999765543333222221 234458999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|+.+++++|.+.+
T Consensus 157 ~~~~~l~~~l~~~~ 170 (170)
T cd01876 157 QGIDELRALIEKWL 170 (170)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=174.49 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=110.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--Ee--CCCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
.+.+.|+++|++|+|||||+++|.+..+.. ...++.|.+..... +. ..+..+.+|||||+ ..+..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh--e~F~~m------- 311 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH--EAFSSM------- 311 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcH--HHHHHH-------
Confidence 367799999999999999999999876652 33344444322111 22 24588999999994 333332
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH-------hcCCCCeEE
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE-------KFTDVDEVI 261 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~i~ 261 (348)
+..++..+|++|+|+|++++...+....+..+.. .++|+|+|+||+|+.... .......+. ...+..+++
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv 388 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMI 388 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEE
Confidence 3345689999999999988776655555555555 679999999999997532 111222221 122346899
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
++||++|.|+++|+++|....
T Consensus 389 ~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 389 PISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEECCCCCCHHHHHHhhhhhh
Confidence 999999999999999987653
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=170.87 Aligned_cols=156 Identities=23% Similarity=0.269 Sum_probs=104.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe------------------CCCeeEEEEeCCCCc
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------GPEYQMILYDTPGII 174 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~~~l~DtpG~~ 174 (348)
.|++.|+++|++|+|||||+|+|.+..+.. ....++|++.-...+. .....+.+|||||+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~- 79 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH- 79 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc-
Confidence 477899999999999999999999986642 1122233321111111 11124899999994
Q ss_pred hhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh-----------
Q 018949 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----------- 243 (348)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------- 243 (348)
..+..+. ..++..+|++++|+|++++...+.......++. .++|+++|+||+|+.....
T Consensus 80 -e~f~~l~-------~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~s 149 (590)
T TIGR00491 80 -EAFTNLR-------KRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESF 149 (590)
T ss_pred -HhHHHHH-------HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHH
Confidence 4444332 234679999999999998776665555555555 6799999999999964210
Q ss_pred ------HH--------HHHHHHH-------------hcCCCCeEEEecCCCCCCHHHHHHHHHH
Q 018949 244 ------IA--------KKLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 244 ------~~--------~~~~~~~-------------~~~~~~~i~~vSA~~g~gi~eL~~~i~~ 280 (348)
+. .....+. ...+..+++++||++|+|+++|..++..
T Consensus 150 ak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 150 SKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 00 0001111 1234468999999999999999998864
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=163.23 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=124.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
.|+|.|++||+...|||||+..+.+.+.. .....+.|++.--..+.. +...+.++|||| +..|..++..+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG--HeAFt~mRaRG---- 75 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG--HEAFTAMRARG---- 75 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCc--HHHHHHHHhcC----
Confidence 47789999999999999999999998876 356667788766555554 346899999999 77888887765
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH-------hcCCCCeEEE
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE-------KFTDVDEVIP 262 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~i~~ 262 (348)
..-+|++++|+|+.++...+...-.+.++. .+.|++|++||+|+++..... ...++. .+.+...+++
T Consensus 76 ---a~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~np~~-v~~el~~~gl~~E~~gg~v~~Vp 149 (509)
T COG0532 76 ---ASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEANPDK-VKQELQEYGLVPEEWGGDVIFVP 149 (509)
T ss_pred ---CccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCCCHHH-HHHHHHHcCCCHhhcCCceEEEE
Confidence 578999999999999999988888888888 899999999999998654322 222222 2334457899
Q ss_pred ecCCCCCCHHHHHHHHHH
Q 018949 263 VSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~ 280 (348)
+||++|+|+++|+..+.-
T Consensus 150 vSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 150 VSAKTGEGIDELLELILL 167 (509)
T ss_pred eeccCCCCHHHHHHHHHH
Confidence 999999999999998864
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=148.19 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=110.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...+|+++|++|||||||+++++...+. ...++.+..........+.+...+.+|||+| +..+..+. ..+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g--~~~~~~~~-------~~~ 78 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAG--QEKFGGLR-------DGY 78 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCC--chhhhhhh-------HHH
Confidence 4458999999999999999877654432 1122233333222222345567899999999 43333332 234
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+..++++++|+|.++.. .....++...... ..+.|+++|+||+|+........... +....+ ..++++||++|.|
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~~~~~~~~-~~~~~~-~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQVKARQIT-FHRKKN-LQYYDISAKSNYN 155 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccccCCHHHHH-HHHHcC-CEEEEEeCCCCCC
Confidence 67899999999998654 2222333332222 25789999999999864322122222 222233 3789999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccC
Q 018949 271 VEDIRDWILTKLPLGPAYYPKDIVS 295 (348)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~~~~ 295 (348)
+++++.+|.+.+...+..+--+.-+
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~ 180 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPA 180 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcc
Confidence 9999999999887777665544444
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=145.10 Aligned_cols=156 Identities=24% Similarity=0.334 Sum_probs=105.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
||+++|.++||||||++++.+..+.... ++.+..........+.....+.+||++| +..+..+.. ..+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g--~~~~~~~~~-------~~~~~ 71 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSG--QERFDSLRD-------IFYRN 71 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETT--SGGGHHHHH-------HHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccc--ccccccccc-------ccccc
Confidence 6999999999999999999987654211 1111222222233334556799999999 444444332 33789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++|+|+|.++.. .....|+.........+.|++||+||.|+.....+ .+....+....+ .+++++||+++.|+.
T Consensus 72 ~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~ 150 (162)
T PF00071_consen 72 SDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGENVK 150 (162)
T ss_dssp ESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHH
T ss_pred cccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCCHH
Confidence 99999999997643 44444444333332236899999999998763332 122344444555 699999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
++|..+.+.+
T Consensus 151 ~~f~~~i~~i 160 (162)
T PF00071_consen 151 EIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-18 Score=170.33 Aligned_cols=157 Identities=21% Similarity=0.296 Sum_probs=114.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee--eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.|+++|++|+|||||+++|.+.... ......+.|.+.....+..++..+.+|||||+ .. +...+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh--e~-------f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH--EK-------FISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH--HH-------HHHHHHhhhc
Confidence 5999999999999999999975421 12234566776666666666788999999994 22 3344556678
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHHH---HHHH-HhcC--CCCeEEEecCCC
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKK---LEWY-EKFT--DVDEVIPVSAKY 267 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~---~~~~-~~~~--~~~~i~~vSA~~ 267 (348)
.+|++++|+|++++...+.......+.. .++| +++|+||+|+.+...+... ...+ .... ...+++++||++
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 9999999999998776655555555555 5678 9999999999876543222 2222 2211 146899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++..+.+.+..
T Consensus 151 G~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 151 GQGIGELKKELKNLLES 167 (581)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 99999999998876644
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=171.95 Aligned_cols=154 Identities=28% Similarity=0.329 Sum_probs=111.5
Q ss_pred cCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEE
Q 018949 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVV 201 (348)
Q Consensus 122 G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~ 201 (348)
|.+|||||||+|++.+.+. .+++.+++|.+.....+..++..+.+|||||..+.............. .....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~-l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDY-LLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHH-HhhcCCCEEEE
Confidence 8999999999999999876 478899999998888777778889999999964422222222222222 11357999999
Q ss_pred EecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 202 LVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 202 VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
|+|+++.... .....+ +.+ .++|+++|+||+|+.+........+.+.+..+ .+++++||++|+|++++++.+.+.
T Consensus 79 VvDat~ler~-l~l~~q-l~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLERN-LYLTLQ-LLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchhh-HHHHHH-HHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHH
Confidence 9999874332 222222 233 57999999999998654433333445555555 489999999999999999999876
Q ss_pred C
Q 018949 282 L 282 (348)
Q Consensus 282 l 282 (348)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 5
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=140.05 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=115.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCC-CCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...+|.++|.+|||||||+-++....+....+. .+..-......+.....++.+|||+| +++++.+ +.++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG--qErFRtL-------TpSy 80 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG--QERFRTL-------TPSY 80 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc--hHhhhcc-------CHhH
Confidence 445899999999999999999999887533222 11111112223456677899999999 7776665 5567
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc--cCCCCEEEEEeccCCCChhhHHHHHH-HHHhcCCCCeEEEecCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLE-WYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~i~~vSA~~ 267 (348)
++.|.++|+|+|.+... ...+.|+.+ +... ..++-.++|+||+|..+.+.+..... .+.+ ...+-++++||++
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~E-ld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr-~h~~LFiE~SAkt 158 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKE-LDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFAR-KHRCLFIECSAKT 158 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHH-HHhhcCCccHhHhhhcccccchhcccccHHHHHHHHH-hhCcEEEEcchhh
Confidence 89999999999998654 445444433 2222 14556679999999875443322221 2222 2234589999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCCC
Q 018949 268 GHGVEDIRDWILTKLPLGPAYYPK 291 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~ 291 (348)
.+|++..|+.++..+.+.|..+..
T Consensus 159 ~~~V~~~FeelveKIi~tp~l~~~ 182 (209)
T KOG0080|consen 159 RENVQCCFEELVEKIIETPSLWEE 182 (209)
T ss_pred hccHHHHHHHHHHHHhcCcchhhc
Confidence 999999999999998877766554
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=149.99 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=110.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-----------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-----------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
+|+++|++|+|||||+++|+.....+. ....+.|.......+.+++.++.+|||||+.+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 489999999999999999986432110 011223344444556778899999999996432
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--h-HHHHHHHHH----
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--E-IAKKLEWYE---- 252 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~-~~~~~~~~~---- 252 (348)
...+..+++.+|++++|+|++.+.......+...+.. .++|+++++||+|+.... . +.+....+.
T Consensus 78 ------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 78 ------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIV 149 (237)
T ss_pred ------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeE
Confidence 2234556789999999999998887766677776666 689999999999987422 1 111111110
Q ss_pred -------------------------------------------------------hcCCCCeEEEecCCCCCCHHHHHHH
Q 018949 253 -------------------------------------------------------KFTDVDEVIPVSAKYGHGVEDIRDW 277 (348)
Q Consensus 253 -------------------------------------------------------~~~~~~~i~~vSA~~g~gi~eL~~~ 277 (348)
......|++..||.++.|+..|++.
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~ 229 (237)
T cd04168 150 PMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG 229 (237)
T ss_pred EEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence 0223458888899999999999999
Q ss_pred HHHhCCC
Q 018949 278 ILTKLPL 284 (348)
Q Consensus 278 i~~~l~~ 284 (348)
|.+.+|.
T Consensus 230 ~~~~~p~ 236 (237)
T cd04168 230 ITKLFPT 236 (237)
T ss_pred HHHhcCC
Confidence 9988764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=146.81 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=105.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-------------CCCCceEE------------------------eEEEEEe
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-------------NKPQTTRH------------------------RILGICS 159 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-------------~~~~~t~~------------------------~~~~~~~ 159 (348)
+|+++|+.++|||||++++....+.... ...+.|.. .....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999854331100 00011100 0001233
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc--cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~--~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
..+..+.++||||+.. + ...+...+ ..+|++++|+|+..+....+..+..++.. .++|+++|+||+|
T Consensus 81 ~~~~~i~liDtpG~~~--~-------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvNK~D 149 (224)
T cd04165 81 KSSKLVTFIDLAGHER--Y-------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVTKID 149 (224)
T ss_pred eCCcEEEEEECCCcHH--H-------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 4467899999999532 1 12223333 37899999999998888888888887777 6799999999999
Q ss_pred CCChhhHHHHHHHHHhcC----------------------------CCCeEEEecCCCCCCHHHHHHHHHH
Q 018949 238 LIKPGEIAKKLEWYEKFT----------------------------DVDEVIPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~~~----------------------------~~~~i~~vSA~~g~gi~eL~~~i~~ 280 (348)
+.+..........+.... ...|+|.+||.+|+|+++|+..|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 987655554444443322 2348999999999999999988864
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=153.65 Aligned_cols=169 Identities=22% Similarity=0.256 Sum_probs=116.3
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC------------------------CCeeEEEEeCCCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------------PEYQMILYDTPGI 173 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~l~DtpG~ 173 (348)
|+++|.||||||||+|++++... .++++|++|..+..+.... ...++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 68999999999999999999876 4688999998877654331 2367999999998
Q ss_pred chhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC--------------C-chH-------HHH----------------
Q 018949 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA--------------P-ERI-------DEI---------------- 215 (348)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~--------------~-~~~-------~~~---------------- 215 (348)
..... ....+...++..++.||++++|+|++.. + ... ..+
T Consensus 80 v~ga~--~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 80 VPGAH--EGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCcc--chhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64321 1122334566778999999999999731 0 000 000
Q ss_pred ------------------------HHHhccc----------------------ccCCCCEEEEEeccCCCChhhHHHHHH
Q 018949 216 ------------------------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGEIAKKLE 249 (348)
Q Consensus 216 ------------------------~~~~~~~----------------------~~~~~p~ivv~NK~Dl~~~~~~~~~~~ 249 (348)
+...+.. +...+|+|+|+||+|+....+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~--- 234 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS--- 234 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH---
Confidence 0000000 013579999999999875544332
Q ss_pred HHHhcCCCCeEEEecCCCCCCHHHHHH-HHHHhCCCCCCCCCCc
Q 018949 250 WYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKD 292 (348)
Q Consensus 250 ~~~~~~~~~~i~~vSA~~g~gi~eL~~-~i~~~l~~~~~~~~~~ 292 (348)
.+.......+++++||+.+.|+++|.+ .+.+.+++.+++....
T Consensus 235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~ 278 (318)
T cd01899 235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD 278 (318)
T ss_pred HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence 222333455799999999999999998 6999999877654333
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=166.77 Aligned_cols=156 Identities=26% Similarity=0.310 Sum_probs=105.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee--------ecC------CCCceEEeEEEEEe-----CCCeeEEEEeCCCCchhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGICS-----GPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~--------~~~------~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~~~~~ 177 (348)
+|+|+|++++|||||+++|+.....+ ..+ ..+.|.......+. ...+.+++|||||+.+
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d-- 82 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD-- 82 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH--
Confidence 79999999999999999998643211 111 12444443322222 2347899999999643
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (348)
+ ...+..++..||++|+|+|++++.+.+....+..... .+.|+++|+||+|+..... ......+....+.
T Consensus 83 F-------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg~ 152 (595)
T TIGR01393 83 F-------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKIDLPSADP-ERVKKEIEEVIGL 152 (595)
T ss_pred H-------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCCccCH-HHHHHHHHHHhCC
Confidence 2 2234456789999999999998775544333322223 5789999999999975321 2222333333332
Q ss_pred --CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 258 --DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 258 --~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
..++++||++|.|+++|+++|.+.++.
T Consensus 153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 153 DASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 258999999999999999999998865
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-18 Score=163.96 Aligned_cols=151 Identities=21% Similarity=0.178 Sum_probs=104.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee------------------------------cCCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+++|++....+. ...+++|++.....+..++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 345899999999999999999985432211 11568888888888888899
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCC--CCchHHHHHHHhcccccCC-CCEEEEEeccCCCC
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDK-LPILLVLNKKDLIK 240 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~--~~~~~~~~~~~~~~~~~~~-~p~ivv~NK~Dl~~ 240 (348)
.+.+|||||+.+ + ...+...+..+|++++|+|+++ +...+.......+.. .+ .|+++|+||+|+..
T Consensus 85 ~i~liDtpG~~~--~-------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 85 YFTIVDCPGHRD--F-------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVAINKMDAVN 153 (425)
T ss_pred EEEEEECCCccc--c-------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEEEEcccccc
Confidence 999999999532 1 1223344678999999999987 665555555555544 34 46899999999975
Q ss_pred h--hhHHH---HHHHHHhcCC----CCeEEEecCCCCCCHHHHH
Q 018949 241 P--GEIAK---KLEWYEKFTD----VDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 241 ~--~~~~~---~~~~~~~~~~----~~~i~~vSA~~g~gi~eL~ 275 (348)
. ..... .+..+....+ ..+++++||++|.|++++.
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 2 11221 1222211222 3579999999999998743
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=152.89 Aligned_cols=157 Identities=31% Similarity=0.399 Sum_probs=119.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.|++|||||+|+|.+.+-. +..++.||..+..+++.+++..++++|+||+......... -..++....+.|
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g--rG~~vlsv~R~A 141 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG--RGRQVLSVARNA 141 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCcccCCC--CcceeeeeeccC
Confidence 8999999999999999999998866 6899999999999999999999999999999875433221 113455668999
Q ss_pred cEEEEEecCCCCCchHHH-------------------------------------------HHHHhcc------------
Q 018949 197 DCIVVLVDACKAPERIDE-------------------------------------------ILEEGVG------------ 221 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~-------------------------------------------~~~~~~~------------ 221 (348)
|++++|+|+..+....+. .+...++
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 999999999865421111 1111111
Q ss_pred -------------cccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 222 -------------DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 222 -------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
....-+|.++|+||+|++...+....... . .++++||..+.|+++|.+.|.+.+.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~----~---~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK----P---NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc----c---ceEEEecccCCCHHHHHHHHHHhhC
Confidence 11124799999999999986554443322 2 6899999999999999999998773
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-17 Score=164.07 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=112.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee--eecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.|+++|++++|||||+++|.|.... ......+.|.......+.. ++..+.+|||||+ .. +...+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh--e~-------fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH--EK-------FLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH--HH-------HHHHHHHHh
Confidence 5899999999999999999985421 1233356666654444433 4567899999995 22 234455667
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHHHHHHHHhc---C--CCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLEWYEKF---T--DVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~---~--~~~~i~~vSA~~ 267 (348)
..+|++++|+|++.+...+.......+.. .++| +++|+||+|+.+..........+... . ...+++++||++
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 89999999999998887777777666665 4566 57999999998754443333333222 1 235899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++|++.|.+....
T Consensus 151 G~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 151 GRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999876543
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-17 Score=158.02 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=81.7
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh-
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP- 241 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~- 241 (348)
.+++++||||+.......+...+.+ .+..+|+|+||+|++......+..+.+.++..+.+.|+++|+||+|+.+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc
Confidence 3589999999864333334444433 58999999999999887666667777777663233699999999999752
Q ss_pred ----hhHHHHHHHH--HhcCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 242 ----GEIAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 242 ----~~~~~~~~~~--~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
..+....... .....+..++++||+.|.|+++|++.|...
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2223332222 223345679999999999999999999873
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=149.35 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=86.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce-----eee------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL-----SIV------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~-----~~~------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
+|+++|++|+|||||+++|+.... ..+ ....+.|.......+.+++.+++++||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 489999999999999999973211 111 12335566666666777889999999999643
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+...+..+++.+|++++|+|+..+.......+...+.. .++|+++++||+|+.+
T Consensus 77 -----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 -----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred -----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 22345567889999999999999887777777777666 6799999999999864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=133.72 Aligned_cols=139 Identities=25% Similarity=0.398 Sum_probs=98.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
||+++|+.|+|||||+++|.+.... ...|.... +.=.++|||| +.-. ...+.........+|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~i~--------~~~~~IDTPG--EyiE---~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQAIE--------YYDNTIDTPG--EYIE---NPRFYHALIVTAQDA 64 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----cCccceeE--------ecccEEECCh--hhee---CHHHHHHHHHHHhhC
Confidence 8999999999999999999997643 11222211 1124599999 3211 122334455556799
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC-ChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
|+|++|.|++.+.......+... -++|+|=|+||+|+. +..+++.....++.. +...+|.+|+.+|+|+++|+
T Consensus 65 d~V~ll~dat~~~~~~pP~fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a-G~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPGFASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKNA-GVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred CEEEEEecCCCCCccCCchhhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHHc-CCCCeEEEECCCCcCHHHHH
Confidence 99999999998765444444433 457999999999999 444555544555444 55578999999999999999
Q ss_pred HHHH
Q 018949 276 DWIL 279 (348)
Q Consensus 276 ~~i~ 279 (348)
++|.
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 9885
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=141.44 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=116.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+|+++|.++||||-|+.++..+.+...+ .+.+.+.......++.+.+..++|||+| +++++.+ ...|+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAG--QERyrAi-------tSaYY 84 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAG--QERYRAI-------TSAYY 84 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccc--hhhhccc-------cchhh
Confidence 348999999999999999999999887533 3444444455556677778899999999 6665544 44668
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+.|-++++|+|.+... +....|+.++......++++++|+||+||...+.+. +....+....+. .++++||..+.|
T Consensus 85 rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l-~f~EtSAl~~tN 163 (222)
T KOG0087|consen 85 RGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL-FFLETSALDATN 163 (222)
T ss_pred cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCc-eEEEeccccccc
Confidence 9999999999998654 555556555544444789999999999998644332 222333333333 789999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++.|..+...+
T Consensus 164 Ve~aF~~~l~~I 175 (222)
T KOG0087|consen 164 VEKAFERVLTEI 175 (222)
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-17 Score=131.35 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=110.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
|..+|.++|..|+||||++++|.+.....+++ |.-.....+..+++.+++||..| +.. +.+.+.+|+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGG--q~~-------lr~~W~nYf 81 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGG--QKT-------LRSYWKNYF 81 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCC--cch-------hHHHHHHhh
Confidence 45589999999999999999999987443333 34444555667789999999999 433 345577889
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCCh---hhHHHHH--HHHHhcCCCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKP---GEIAKKL--EWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~---~~~~~~~--~~~~~~~~~~~i~~vSA 265 (348)
..+|++|||+|+++.. ++....+...+.. ...+.|++|+.||.|+... .++.... ..+. ...-++++-|||
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~-ks~~~~l~~cs~ 160 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA-KSHHWRLVKCSA 160 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc-cccCceEEEEec
Confidence 9999999999997654 2222333333322 1267899999999999843 2332221 1221 223358999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
.+|+++.+-++|+...+.
T Consensus 161 ~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred cccccHHHHHHHHHHHHH
Confidence 999999999999887653
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-17 Score=141.47 Aligned_cols=173 Identities=14% Similarity=0.206 Sum_probs=117.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|+|||||+|+|+|.+..... ..++.|...........+..+.++||||+.+... ..+...+...+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 7999999999999999999998765333 2456677666665566788999999999876431 233444445555556
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccc-c--CCCCEEEEEeccCCCChhhHHHH--------HHHHHhcCCCCeEEE
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAKK--------LEWYEKFTDVDEVIP 262 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~-~--~~~p~ivv~NK~Dl~~~~~~~~~--------~~~~~~~~~~~~i~~ 262 (348)
..+|+++||+|+.+ ....+....+.++.. + .-.++++|+|+.|......+++. ...+....+. ++.
T Consensus 82 ~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r--~~~ 158 (196)
T cd01852 82 PGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR--YVA 158 (196)
T ss_pred CCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe--EEE
Confidence 78999999999987 655555555544432 2 12688999999998764333222 2222222222 223
Q ss_pred e-----cCCCCCCHHHHHHHHHHhCCC-CCCCCCCc
Q 018949 263 V-----SAKYGHGVEDIRDWILTKLPL-GPAYYPKD 292 (348)
Q Consensus 263 v-----SA~~g~gi~eL~~~i~~~l~~-~~~~~~~~ 292 (348)
. |+..+.++.+|++.|.++++. .++.|..+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~ 194 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTND 194 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3 356788999999999999986 66666543
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=147.23 Aligned_cols=146 Identities=19% Similarity=0.184 Sum_probs=96.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee------------------------------eecCCCCceEEeEEEEEeCCCeeEE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQMI 166 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 166 (348)
+|+++|++++|||||+.+|+..... ......++|++.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 3899999999999999998632110 0112345677777777788889999
Q ss_pred EEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-------CchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 167 l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-------~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
+|||||+.+ +...+...+..+|++|+|+|++.+ ...+........... ...|+++|+||+|+.
T Consensus 81 liDtpG~~~---------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRD---------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHH---------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEEEccccc
Confidence 999999532 123344557889999999999873 222223333333331 236899999999998
Q ss_pred C----hhhHHHHHHHHH---hcCC----CCeEEEecCCCCCCHH
Q 018949 240 K----PGEIAKKLEWYE---KFTD----VDEVIPVSAKYGHGVE 272 (348)
Q Consensus 240 ~----~~~~~~~~~~~~---~~~~----~~~i~~vSA~~g~gi~ 272 (348)
. ..........+. ...+ ..+++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 3 222233333222 1222 3579999999999997
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-17 Score=162.58 Aligned_cols=157 Identities=25% Similarity=0.299 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee--------ec------CCCCceEEeEEEEE-----eCCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGIC-----SGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~--------~~------~~~~~t~~~~~~~~-----~~~~~~~~l~DtpG~~~~ 176 (348)
.+|+|+|+.++|||||+++|+...... .. ...+.|.......+ +..++.+++|||||+.+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 389999999999999999997632111 01 11233333222222 234678999999996442
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
. ..+..++..||++|+|+|++++.+.+....+..... .+.|+++|+||+|+..... ......+....+
T Consensus 88 ~---------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg 155 (600)
T PRK05433 88 S---------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEIIPVLNKIDLPAADP-ERVKQEIEDVIG 155 (600)
T ss_pred H---------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCcccH-HHHHHHHHHHhC
Confidence 1 234455789999999999998876555444333333 5789999999999875321 222233333333
Q ss_pred C--CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 257 V--DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 257 ~--~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
. ..++++||++|.|+++|+++|.+.++.
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 2 258999999999999999999998865
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=145.35 Aligned_cols=114 Identities=22% Similarity=0.234 Sum_probs=80.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee---------------cCC------CCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---------------TNK------PQTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~---------------~~~------~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
+|+++|++|+|||||+++|+.....+. .+. .+.+.......+.+++..+++|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 799999999999999999985322111 000 11222333345677889999999999533
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+. ..+..+++.+|++|+|+|++.+.......++..... .++|+++++||+|+...
T Consensus 84 --f~-------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 --FS-------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred --HH-------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 11 224455688999999999998776666666666555 67999999999998643
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.5e-17 Score=132.05 Aligned_cols=150 Identities=21% Similarity=0.181 Sum_probs=96.3
Q ss_pred EEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCcc
Q 018949 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad 197 (348)
++|++|+|||||+|++.+..... .....+...... ......+..+.+|||||+... .. .....+..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~-------~~~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF--RS-------LRRLYYRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHH--Hh-------HHHHHhcCCC
Confidence 57999999999999999876521 111111122222 222233578999999995332 11 1134578999
Q ss_pred EEEEEecCCCCCchHHHHH---HHhcccccCCCCEEEEEeccCCCChhhHHHHH-HHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 198 CIVVLVDACKAPERIDEIL---EEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 198 ~iv~VvD~~~~~~~~~~~~---~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
++++|+|++.+........ .........+.|+++|+||+|+.......... ..........+++++|+..+.|+.+
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEE 150 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHH
Confidence 9999999987653222211 11122223789999999999998654433321 2222233446899999999999999
Q ss_pred HHHHHH
Q 018949 274 IRDWIL 279 (348)
Q Consensus 274 L~~~i~ 279 (348)
++++|.
T Consensus 151 ~~~~l~ 156 (157)
T cd00882 151 LFEELA 156 (157)
T ss_pred HHHHHh
Confidence 999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.3e-17 Score=161.13 Aligned_cols=156 Identities=24% Similarity=0.284 Sum_probs=101.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC------------------CCeeEEEEeCCCCc
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------PEYQMILYDTPGII 174 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~l~DtpG~~ 174 (348)
.|++.|+++|++|+|||||+++|.+..... ....+.|++.-...+.. .-..+.+|||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~-~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~- 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAA-KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH- 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh-
Confidence 478899999999999999999998875431 11122232211111100 0012789999995
Q ss_pred hhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh-----------
Q 018949 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----------- 243 (348)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------- 243 (348)
..+..+. ...+..+|++++|+|++++...+.......+.. .++|+++++||+|+.....
T Consensus 82 -e~f~~~~-------~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 82 -EAFTNLR-------KRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred -HHHHHHH-------HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 3443332 234678999999999998776666555566555 6899999999999852100
Q ss_pred ------HH--------HHHHHHH-------------hcCCCCeEEEecCCCCCCHHHHHHHHHH
Q 018949 244 ------IA--------KKLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 244 ------~~--------~~~~~~~-------------~~~~~~~i~~vSA~~g~gi~eL~~~i~~ 280 (348)
.. +....+. ...+..+++++||++|+|+++|+..+..
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 0111222 1224468999999999999999988753
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=152.11 Aligned_cols=156 Identities=20% Similarity=0.215 Sum_probs=124.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.|+|.|.|||+...|||||+.+|.+..++. ....|.|++.--..+. ..|..++++|||| +..|..++..+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPG--HaAF~aMRaRG------ 221 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPG--HAAFSAMRARG------ 221 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCc--HHHHHHHHhcc------
Confidence 588899999999999999999999998873 5566777765332222 2678899999999 66777776654
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHH-------HHHhcCCCCeEEEec
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE-------WYEKFTDVDEVIPVS 264 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~-------~~~~~~~~~~i~~vS 264 (348)
..-+|++|+||-+.++...+........+. .++|+|+++||+|.+.... +.... .+....+..+++++|
T Consensus 222 -A~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 222 -ANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVIPIS 297 (683)
T ss_pred -CccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEEEee
Confidence 678899999999999998888887777777 8999999999999886442 22222 233456777999999
Q ss_pred CCCCCCHHHHHHHHHHh
Q 018949 265 AKYGHGVEDIRDWILTK 281 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~ 281 (348)
|++|+|++.|-+++.-+
T Consensus 298 Al~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLL 314 (683)
T ss_pred cccCCChHHHHHHHHHH
Confidence 99999999999987643
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-16 Score=158.75 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=114.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee---------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+|+|+|+.++|||||+++|+....... ....+.|.......+.+++..+++|||||+.+ +.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d--f~- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD--FG- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch--hH-
Confidence 3899999999999999999986321111 12334555555566778889999999999643 22
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh---HHHHHHHHHh----
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEK---- 253 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~---- 253 (348)
..+..++..+|++|+|+|++.+...+...++..+.. .++|.++|+||+|+..... +.+....+..
T Consensus 83 ------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 83 ------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT 154 (607)
T ss_pred ------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence 234456789999999999998877666666666555 6799999999999875321 2222222221
Q ss_pred -cCCCCeEEEecCCCCC----------CHHHHHHHHHHhCCCC
Q 018949 254 -FTDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLG 285 (348)
Q Consensus 254 -~~~~~~i~~vSA~~g~----------gi~eL~~~i~~~l~~~ 285 (348)
.....|++++||++|. |+..|++.|.+.++..
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 1112589999999998 6899999999998753
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-16 Score=153.37 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=103.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee---------------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
..+|+++|++++|||||+++|++..... .....+.|.+.....+..++..+.++||||+.
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~----- 86 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA----- 86 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH-----
Confidence 3489999999999999999998742211 11225666666555566677889999999953
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHH-----HHHHHHh
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYEK 253 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~-----~~~~~~~ 253 (348)
.+...+...+..+|++++|+|+..+...+...+...+.. .++| +|+|+||+|+.+..+..+ ....+..
T Consensus 87 ----~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 87 ----DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred ----HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 233445566789999999999998887777777777766 6788 778999999986543221 1122222
Q ss_pred cC---CCCeEEEecCCCCCC
Q 018949 254 FT---DVDEVIPVSAKYGHG 270 (348)
Q Consensus 254 ~~---~~~~i~~vSA~~g~g 270 (348)
.. ...+++++||.+|.|
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred hCCCCCcceEEEcchhhccc
Confidence 11 136899999999874
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=152.14 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=113.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee---------------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...+|+++|++++|||||+++|++.... ......+.|.+.....+..++..+.++||||+.+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~--- 87 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD--- 87 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH---
Confidence 3448999999999999999999863110 0112456677766566666778899999999531
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHH-HHHHHHh---
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-KLEWYEK--- 253 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~-~~~~~~~--- 253 (348)
+...+...+..+|++++|+|+..+...+...++..+.. .++| +|+|+||+|+.+..+..+ ....+..
T Consensus 88 ------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 88 ------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 22344555678999999999998887777777777666 5788 678999999985433322 1112221
Q ss_pred cCC----CCeEEEecCCCCC--------CHHHHHHHHHHhCCC
Q 018949 254 FTD----VDEVIPVSAKYGH--------GVEDIRDWILTKLPL 284 (348)
Q Consensus 254 ~~~----~~~i~~vSA~~g~--------gi~eL~~~i~~~l~~ 284 (348)
..+ ..+++++||++|. ++.+|++.+.+.++.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 122 3589999999983 688999999887763
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=160.09 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=114.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-----e----------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----V----------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-----~----------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+|+|+|+.++|||||+++|+...... + ....+.|.......+.+++..+++|||||+.+ +
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D--F--- 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD--F--- 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH--H---
Confidence 79999999999999999998532110 0 11234555555556778889999999999533 2
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hH-HHHHHHHHhc----
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EI-AKKLEWYEKF---- 254 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~-~~~~~~~~~~---- 254 (348)
...+..++..+|++++|+|+..+...+...++..+.. .++|+|+|+||+|+.... ++ .+....+...
T Consensus 78 ----~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~ 151 (594)
T TIGR01394 78 ----GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADD 151 (594)
T ss_pred ----HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence 2334566789999999999998887777777776666 679999999999986532 22 2222222211
Q ss_pred -CCCCeEEEecCCCCC----------CHHHHHHHHHHhCCCC
Q 018949 255 -TDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLG 285 (348)
Q Consensus 255 -~~~~~i~~vSA~~g~----------gi~eL~~~i~~~l~~~ 285 (348)
....|++++||++|. |+..|++.|.+.++..
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 112479999999995 8999999999998753
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-17 Score=130.18 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=109.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|..|||||.|+.++...-+.+. ..+.+..-......+..+..++.+|||+| +++++++ +.+|++.
T Consensus 9 kivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag--qerfrsi-------tqsyyrs 79 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG--QERFRSI-------TQSYYRS 79 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc--hHHHHHH-------HHHHhhh
Confidence 899999999999999999987665421 12222222223334566778999999999 6666554 5677899
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH-HHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
|+++|+|+|.+..+ ....+|+.+.-.-...++--|+|+||+|+.+.+++...+ ..+... ...-++++||+..+|++
T Consensus 80 ahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~-qdmyfletsakea~nve 158 (213)
T KOG0095|consen 80 AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA-QDMYFLETSAKEADNVE 158 (213)
T ss_pred cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHh-hhhhhhhhcccchhhHH
Confidence 99999999997544 555666655433322445568999999998876665443 233322 22246899999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
.||..+.-.+
T Consensus 159 ~lf~~~a~rl 168 (213)
T KOG0095|consen 159 KLFLDLACRL 168 (213)
T ss_pred HHHHHHHHHH
Confidence 9998876544
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=144.35 Aligned_cols=113 Identities=25% Similarity=0.278 Sum_probs=79.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee---cCCC--------------CceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---TNKP--------------QTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~---~~~~--------------~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
+|+++|++|+|||||+++|++...... .... +.|.......+.+++..+++|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 489999999999999999975432110 0011 2222333345566788999999999532
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+...+..++..+|++++|+|++.+.......++..+.. .++|+++|+||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~ 130 (268)
T cd04170 77 -----FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRER 130 (268)
T ss_pred -----HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCC
Confidence 12334456789999999999998776665555555555 6799999999999864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-17 Score=142.72 Aligned_cols=171 Identities=24% Similarity=0.270 Sum_probs=123.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+.+.+|.++|.+|+|||||||+|++.....++..+.++.........+++..+++|||||+++.... +......++.+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~--D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK--DAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhh--hHHHHHHHHHH
Confidence 3555788999999999999999998776666666656655555555666778999999999774322 33345567777
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh----------------hHHHHHHHHHh-cC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------------EIAKKLEWYEK-FT 255 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~~~~~~~-~~ 255 (348)
+...|++++++|+.++.-..+..+...+.....+.|+++++|.+|...+. .+++....+.+ ..
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q 194 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ 194 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 89999999999998877444444444333333568999999999975431 11222222222 22
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
...|++.+|+..+.|+++|..++.+.++..
T Consensus 195 ~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 195 EVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred hcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 345889999999999999999999998753
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=152.24 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=112.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC------ceee---------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...+|+++|++++|||||+++|.+. .... .....++|.+.....+..++.++.++||||+.+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 3448999999999999999999732 1111 122367788877777777788999999999632
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHHHH-HHHH---h
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL-EWYE---K 253 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~-~~~~---~ 253 (348)
++..+...+..+|++++|+|+..+...++..+...+.. .++| +|+|+||+|+.+..+..+.. ..+. .
T Consensus 137 ------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 137 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 23334444567999999999998887777777777776 6789 47899999998644332222 1222 1
Q ss_pred cC----CCCeEEEecCC---CCCC-------HHHHHHHHHHhCC
Q 018949 254 FT----DVDEVIPVSAK---YGHG-------VEDIRDWILTKLP 283 (348)
Q Consensus 254 ~~----~~~~i~~vSA~---~g~g-------i~eL~~~i~~~l~ 283 (348)
.. ...|++++||. +|.| +.+|++.+.+.++
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 11 23588999886 4545 7888888888765
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=152.03 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=101.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEE--------------------EEEeC------CCeeE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRIL--------------------GICSG------PEYQM 165 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~--------------------~~~~~------~~~~~ 165 (348)
...+|+++|++++|||||+++|.+..... .....+.|...-. ..++. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 34589999999999999999997642110 0111112211110 00011 14679
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 244 (348)
.+|||||+. . +...+...+..+|++++|+|++++. ..+....+..+... ...|+++|+||+|+.+....
T Consensus 83 ~liDtPGh~--~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 83 SFVDAPGHE--T-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EEEECCCHH--H-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHHHH
Confidence 999999942 2 2233445567899999999999765 44444444444432 23578999999999865433
Q ss_pred HHHHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 245 AKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 245 ~~~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
......+.... ...+++++||++|.|+++|+++|...++
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22222222211 2358999999999999999999998765
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.2e-17 Score=129.13 Aligned_cols=154 Identities=20% Similarity=0.278 Sum_probs=110.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCce-EEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t-~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+.+|+|.+|||||||+-++....+. ..+..|+ .+..... ++++.+.+.+|||+| ++.++.+ +..++
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs--~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG--qErFrti-------tstyy 78 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFS--GSYITTIGVDFKIRTVDINGDRVKLQIWDTAG--QERFRTI-------TSTYY 78 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccc--cceEEEeeeeEEEEEeecCCcEEEEEEeeccc--HHHHHHH-------HHHHc
Confidence 6889999999999999999988775 2233232 2233333 445667899999999 6655443 44568
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+..+++++|+|.+++. ....+|+.+. +.....+|-++|+||.|.+....+. +....+....+. .+|++||+..+|
T Consensus 79 rgthgv~vVYDVTn~ESF~Nv~rWLeei-~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-e~FETSaKe~~N 156 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTNGESFNNVKRWLEEI-RNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-ELFETSAKENEN 156 (198)
T ss_pred cCCceEEEEEECcchhhhHhHHHHHHHH-HhcCccccceecccCCCCccceeeehHHHHHHHHhcCc-hheehhhhhccc
Confidence 9999999999999765 4444454444 4444789999999999998765332 222333333343 689999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
++..|..|.+++.
T Consensus 157 vE~mF~cit~qvl 169 (198)
T KOG0079|consen 157 VEAMFHCITKQVL 169 (198)
T ss_pred chHHHHHHHHHHH
Confidence 9999999987653
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=150.31 Aligned_cols=188 Identities=24% Similarity=0.263 Sum_probs=130.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee--------------ecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKK 177 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~ 177 (348)
-.+++|+-+...|||||..+|+.....+ +....|.|.-.+..-+.+ ..+.++++||||+++..
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 3379999999999999999987432211 223335555544443333 34889999999988755
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHHHhcC
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFT 255 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~ 255 (348)
.. +.+.+..||++++|||++.+.+.+........-+ .+..+|.|+||+|++.++ .+......+-...
T Consensus 140 ~E---------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 140 GE---------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--AGLAIIPVLNKIDLPSADPERVENQLFELFDIP 208 (650)
T ss_pred ce---------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence 33 3344689999999999999998766543333333 788999999999998654 3333333333332
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEE
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQ 324 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~ 324 (348)
. .+++.+||++|.|+++++++|.+.++.. ....+.|.+. ++-+-.+..++..|.+..-
T Consensus 209 ~-~~~i~vSAK~G~~v~~lL~AII~rVPpP------~~~~d~plr~----Lifds~yD~y~G~I~~vrv 266 (650)
T KOG0462|consen 209 P-AEVIYVSAKTGLNVEELLEAIIRRVPPP------KGIRDAPLRM----LIFDSEYDEYRGVIALVRV 266 (650)
T ss_pred c-cceEEEEeccCccHHHHHHHHHhhCCCC------CCCCCcchHH----HhhhhhhhhhcceEEEEEE
Confidence 2 3789999999999999999999999763 2334566665 4555566777777766443
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=126.93 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=108.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+++++|+.|.|||.|+..+...++.- ++.+.+..-......+..+.+++.+|||+| ++.++++ ++.|++.
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAG--QErFRSV-------tRsYYRG 81 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG--QERFRSV-------TRSYYRG 81 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeeccc--HHHHHHH-------HHHHhcc
Confidence 89999999999999999999887652 122222222222222344567899999999 6665544 6678999
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH-HHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
|-++++|+|+++.. .....|+........+++-+|+++||.|+.+.+++.-. ...+...... -+.++||++|+|++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel-~flETSa~TGeNVE 160 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSALTGENVE 160 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccce-eeeeecccccccHH
Confidence 99999999998654 55556655544333477888999999999877665322 2233333332 57899999999999
Q ss_pred HHHHHHHHh
Q 018949 273 DIRDWILTK 281 (348)
Q Consensus 273 eL~~~i~~~ 281 (348)
+.|-...+.
T Consensus 161 EaFl~c~~t 169 (214)
T KOG0086|consen 161 EAFLKCART 169 (214)
T ss_pred HHHHHHHHH
Confidence 988665443
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.9e-16 Score=148.12 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=109.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC-------ceee--------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ-------KLSI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~-------~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...+|+++|++++|||||+++|++. +... .....+.|.......+..++..+.++||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 3458999999999999999999862 1100 11244666666555566677889999999952
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCChhhHHH----HHHHHHh
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIAK----KLEWYEK 253 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~----~~~~~~~ 253 (348)
.+...+...+..+|++++|+|+..+...+...+...+.. .++|.+ +|+||+|+.+..+..+ ....+..
T Consensus 87 -----~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 233445566789999999999998776666666666655 678866 5799999985432211 1112222
Q ss_pred cCC----CCeEEEecCCCCC----------CHHHHHHHHHHhCC
Q 018949 254 FTD----VDEVIPVSAKYGH----------GVEDIRDWILTKLP 283 (348)
Q Consensus 254 ~~~----~~~i~~vSA~~g~----------gi~eL~~~i~~~l~ 283 (348)
..+ ..+++++||.+|. ++.+|++.|.+.++
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 221 3589999999984 67788888877664
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=7e-16 Score=149.33 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCce--eeecCCCCceEEeEEEE--------------E------eC-C-----CeeEE
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGI--------------C------SG-P-----EYQMI 166 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~--~~~~~~~~~t~~~~~~~--------------~------~~-~-----~~~~~ 166 (348)
..+|+++|+.++|||||+.+|.+... .......+.|....... + .. + ...+.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 34899999999999999999976311 10111223333221100 0 00 0 25799
Q ss_pred EEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH
Q 018949 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (348)
Q Consensus 167 l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 245 (348)
+|||||+. . +...+......+|++++|+|++++. ..........+... ...|+++|+||+|+.+.....
T Consensus 89 liDtPG~~--~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 89 FVDAPGHE--T-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred EEECCCHH--H-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccchhHH
Confidence 99999942 2 2334455567889999999999765 44434444444432 224789999999998654432
Q ss_pred HHHHHHHhc-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 246 KKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 246 ~~~~~~~~~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.....+... ....+++++||++|.|+++|+++|.+.++.
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 222222221 123589999999999999999999987754
|
|
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=145.88 Aligned_cols=159 Identities=18% Similarity=0.126 Sum_probs=112.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee---------------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...+|+++|++++|||||+++|++.... ......+.|.......+..++.++.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 3448999999999999999999863110 011245677776666666677889999999952
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCChhhHH-HHHHHHHh---
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-KKLEWYEK--- 253 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~-~~~~~~~~--- 253 (348)
.+...+...+..+|++++|+|+..+...+...+...+.. .++|.+ +++||+|+.+..+.. .....+..
T Consensus 87 -----~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 233445566789999999999998887777777777766 678976 589999998543321 11112221
Q ss_pred cC----CCCeEEEecCCCCC----------CHHHHHHHHHHhCC
Q 018949 254 FT----DVDEVIPVSAKYGH----------GVEDIRDWILTKLP 283 (348)
Q Consensus 254 ~~----~~~~i~~vSA~~g~----------gi~eL~~~i~~~l~ 283 (348)
.. ...+++++||++|. |+..|++.|.+.++
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 11 23689999999875 57788888887654
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=146.55 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=107.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC------cee---------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLS---------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
+..+|+++|+.++|||||+++|++. ... ......+.|.+.....+..++..+.+|||||+.+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~--- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH---
Confidence 4458999999999999999999743 100 0112356777766666666778899999999532
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCChhhHHH----HHHHHHh
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIAK----KLEWYEK 253 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~----~~~~~~~ 253 (348)
+...+...+..+|++++|+|+..+...+...++..+.. .++|.+ +|+||+|+.+..+..+ ....+..
T Consensus 88 ------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 88 ------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 22334455678999999999998877776666666665 567865 6899999986443221 1222222
Q ss_pred cCC----CCeEEEecCCCCC--------CHHHHHHHHHHhC
Q 018949 254 FTD----VDEVIPVSAKYGH--------GVEDIRDWILTKL 282 (348)
Q Consensus 254 ~~~----~~~i~~vSA~~g~--------gi~eL~~~i~~~l 282 (348)
..+ ..+++++||.+|. ++.+|++.+.+.+
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 222 2689999999875 3456666666544
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.7e-16 Score=150.14 Aligned_cols=150 Identities=20% Similarity=0.193 Sum_probs=99.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee------------------------------ecCCCCceEEeEEEEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~ 164 (348)
..+|+++|++++|||||+++|+...... .....+.|.+.....+..++..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~ 86 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYE 86 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeE
Confidence 3489999999999999999998422110 0123366777777777888899
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC---CchHHHHHHHhcccccCCCCEEEEEeccCCCC-
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNKKDLIK- 240 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~- 240 (348)
+.+|||||+ .. +...+...+..+|++++|+|++++ ...+........+.. ...|+|+|+||+|+.+
T Consensus 87 i~iiDtpGh--~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 87 VTIVDCPGH--RD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNY 156 (426)
T ss_pred EEEEECCCH--HH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCc
Confidence 999999994 22 223444556899999999999887 333333322333332 2357999999999974
Q ss_pred -hhhHHH---HHHHHHhcCC----CCeEEEecCCCCCCHHHH
Q 018949 241 -PGEIAK---KLEWYEKFTD----VDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 241 -~~~~~~---~~~~~~~~~~----~~~i~~vSA~~g~gi~eL 274 (348)
...... ....+....+ ..+++++||++|.|+.++
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 222221 2222222222 358999999999999863
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=130.55 Aligned_cols=160 Identities=20% Similarity=0.241 Sum_probs=117.7
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+.+..+|+++|--|+||||+++++...+.....+ |.......+.+++..+.+||..| +...+.+ +..
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvP----TiGfnVE~v~ykn~~f~vWDvGG--q~k~R~l-------W~~ 80 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVP----TIGFNVETVEYKNISFTVWDVGG--QEKLRPL-------WKH 80 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCC----ccccceeEEEEcceEEEEEecCC--Ccccccc-------hhh
Confidence 4456689999999999999999998777653333 33334445566689999999999 5444433 556
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChh---hHHHHHHHHHhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
|+...+++|||+|+++.. .+..+.+...+.... .+.|+++.+||.|++..- ++.+.+....-....+.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 689999999999998754 444455555554422 579999999999998643 44444444333445567899999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
.+|+|+.+-++++.+.+..
T Consensus 161 ~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccccHHHHHHHHHHHHhc
Confidence 9999999999999987753
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=134.38 Aligned_cols=112 Identities=24% Similarity=0.310 Sum_probs=77.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCC---------------ceEEe--EEEEEe--------CCCeeEEEEeCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ---------------TTRHR--ILGICS--------GPEYQMILYDTP 171 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~---------------~t~~~--~~~~~~--------~~~~~~~l~Dtp 171 (348)
+|+++|+.++|||||+++|+...........+ .|... ....+. ..+..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999997543211111111 11111 111222 226789999999
Q ss_pred CCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 172 G~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
|+.+ +...+..++..+|++++|+|+..+.......+...... .++|+++|+||+|+.
T Consensus 82 G~~~---------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD---------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc---------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 9643 22345566789999999999998887666666665554 578999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-17 Score=131.78 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=112.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE--eE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~--~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.+|+++|..=||||||+-+++..++.- ..-+|.. .. ...+......+.+|||+| ++.++.+...+
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~---kHlsTlQASF~~kk~n~ed~ra~L~IWDTAG--QErfHALGPIY------ 82 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNC---KHLSTLQASFQNKKVNVEDCRADLHIWDTAG--QERFHALGPIY------ 82 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcch---hhHHHHHHHHhhcccccccceeeeeeeeccc--hHhhhccCceE------
Confidence 489999999999999999999877642 1111111 11 111223345799999999 88888776644
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-HHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++.++++++|+|.++.. +....|+.++...++..+.++||+||+|+...+.+.. ....+....+. .++.+||+.+
T Consensus 83 -YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA-~y~eTSAk~N 160 (218)
T KOG0088|consen 83 -YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGA-LYMETSAKDN 160 (218)
T ss_pred -EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhch-hheecccccc
Confidence 89999999999998654 6667788877777777889999999999986554322 22334444443 6899999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.||.+||..+...+
T Consensus 161 ~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 161 VGISELFESLTAKM 174 (218)
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999887654
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-16 Score=123.18 Aligned_cols=156 Identities=14% Similarity=0.212 Sum_probs=107.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEE-eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
++.|+|...+|||||+-+..+..+.+.- .+-|.. .....++ ..+...+++|||+| ++.++.+ +-.+++
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid-FKvKTvyr~~kRiklQiwDTag--qEryrti-------TTayyR 92 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID-FKVKTVYRSDKRIKLQIWDTAG--QERYRTI-------TTAYYR 92 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeee-EEEeEeeecccEEEEEEEeccc--chhhhHH-------HHHHhh
Confidence 8999999999999999999998765310 011111 1111222 23457899999999 5554433 445689
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.++++|+++|.++.. .....|... ++.. -.+.|+|+|+||||+.+.+.+ .+....+...+++ .+|++||+.+.|
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tq-Iktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtSaK~Nin 170 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQ-IKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETSAKENIN 170 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHH-heeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhccccccc
Confidence 999999999998754 333333332 2221 268999999999999875533 2233445555666 789999999999
Q ss_pred HHHHHHHHHHhCCC
Q 018949 271 VEDIRDWILTKLPL 284 (348)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (348)
++.+|+.++..+-.
T Consensus 171 Vk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 171 VKQVFERLVDIICD 184 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876643
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=156.92 Aligned_cols=116 Identities=20% Similarity=0.229 Sum_probs=89.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCce-----eeec------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|++|+|||||+++|+.... ..+. ...++|.......+.+++..++++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 344899999999999999999975311 1111 2445666666666777889999999999643
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+...+..++..+|++|+|+|+..+.+.+++.++..+.. .++|+|+++||+|+..
T Consensus 86 --------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 --------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred --------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 22346677889999999999999888877777777766 6799999999999875
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.4e-16 Score=152.44 Aligned_cols=151 Identities=21% Similarity=0.167 Sum_probs=99.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecC----------CC----------------------CceEEeEEEEEeCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN----------KP----------------------QTTRHRILGICSGP 161 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~----------~~----------------------~~t~~~~~~~~~~~ 161 (348)
...+|+++|++++|||||+++|+.....+... .. +.|.+.....+..+
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 34589999999999999999998654322110 01 23445444556677
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+.++.++||||+. . +...+...+..+|++++|+|+..+...+......++... ...|+|+|+||+|+.+.
T Consensus 106 ~~~i~~iDTPGh~--~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 106 KRKFIIADTPGHE--Q-------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVDY 175 (474)
T ss_pred CcEEEEEECCCcH--H-------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeeccccc
Confidence 8899999999952 2 222333446899999999999988755444444444432 22478999999999742
Q ss_pred h--hHHHHHHHHHh---c---CCCCeEEEecCCCCCCHHHH
Q 018949 242 G--EIAKKLEWYEK---F---TDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 242 ~--~~~~~~~~~~~---~---~~~~~i~~vSA~~g~gi~eL 274 (348)
. .+......+.. . ....+++++||++|.|++++
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2 22333333321 1 12468999999999999865
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-16 Score=152.11 Aligned_cols=161 Identities=20% Similarity=0.232 Sum_probs=116.9
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE------------------eCCCeeEEEEeCC
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC------------------SGPEYQMILYDTP 171 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~------------------~~~~~~~~l~Dtp 171 (348)
..+.|++.+||+|+..+|||-|+..+.+.++.- ....+.|...--..+ ...-..+.++|||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtp 548 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTP 548 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhcccccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCC
Confidence 446799999999999999999999999877642 333333333211111 1222358999999
Q ss_pred CCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh------hhH-
Q 018949 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------GEI- 244 (348)
Q Consensus 172 G~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------~~~- 244 (348)
| ++.|..++..+ ...||++|+|+|.+++.+.+.....++++. .+.|+||++||+|..-. ..+
T Consensus 549 g--hEsFtnlRsrg-------sslC~~aIlvvdImhGlepqtiESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 549 G--HESFTNLRSRG-------SSLCDLAILVVDIMHGLEPQTIESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred C--chhhhhhhhcc-------ccccceEEEEeehhccCCcchhHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHH
Confidence 9 66777776655 679999999999999998888888888888 89999999999997521 111
Q ss_pred -----------HH-------HHHHHHh-------------cCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 245 -----------AK-------KLEWYEK-------------FTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 245 -----------~~-------~~~~~~~-------------~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+ +...+.. ......++|+||.+|+||.+|+-+|+++.
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 11 1111111 11234789999999999999999998754
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=149.25 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=82.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-----ee----------cC------CCCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IV----------TN------KPQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-----~~----------~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
+..+|+|+|++|+|||||+++|+..... .+ ++ ..+.|.......+.+++..+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 3448999999999999999999732111 01 00 001222333344667789999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+.+. ...+..++..+|++|+|+|++.+.......+....+. .++|+++++||+|+..
T Consensus 89 ~~df---------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDF---------SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred chhh---------HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--cCCCEEEEEECCcccc
Confidence 6432 1234455789999999999998887776777776666 7899999999999864
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=132.61 Aligned_cols=160 Identities=19% Similarity=0.130 Sum_probs=100.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee-ecCCCC---ceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQ---TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~---~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.+|+++|.+|+|||||+|+|+|..... .....+ +|..... +.......+.+|||||+.... ..... +.+. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~l~l~DtpG~~~~~-~~~~~-~l~~--~ 76 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP-YPHPKFPNVTLWDLPGIGSTA-FPPDD-YLEE--M 76 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee-eecCCCCCceEEeCCCCCccc-CCHHH-HHHH--h
Confidence 479999999999999999999854321 111111 2221111 111123468999999975422 11222 2121 2
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh---------HHH----HHHHHHh---c-
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---------IAK----KLEWYEK---F- 254 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---------~~~----~~~~~~~---~- 254 (348)
.+..+|++++|.+. +....+..+...++. .+.|+++|+||+|+....+ ..+ ....+.. .
T Consensus 77 ~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 77 KFSEYDFFIIISST--RFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CccCcCEEEEEeCC--CCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 25788999988543 456666667777766 5789999999999953211 111 1122221 1
Q ss_pred -CCCCeEEEecCC--CCCCHHHHHHHHHHhCCC
Q 018949 255 -TDVDEVIPVSAK--YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 255 -~~~~~i~~vSA~--~g~gi~eL~~~i~~~l~~ 284 (348)
....+++.+|+. .+.|+..|.+.|...++.
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 234579999999 679999999999988864
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=158.94 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----ecC------------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VTN------------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----~~~------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+-.+|+|+|++|+|||||+|+|++....+ +.+ ..++|.......+.+++..+++|||||+.+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 33489999999999999999997432211 111 2456666666677788899999999997542
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
. ..+..++..+|++++|+|++.+.......++..+.. .++|+++|+||+|+.... .......+....+
T Consensus 89 ~---------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~ 156 (689)
T TIGR00484 89 T---------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLG 156 (689)
T ss_pred h---------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 1 234456789999999999998887766666666665 679999999999998644 3334444444433
Q ss_pred CC---eEEEecCCCC
Q 018949 257 VD---EVIPVSAKYG 268 (348)
Q Consensus 257 ~~---~i~~vSA~~g 268 (348)
.. .++++|+..+
T Consensus 157 ~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 157 ANAVPIQLPIGAEDN 171 (689)
T ss_pred CCceeEEeccccCCC
Confidence 32 3688998766
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-15 Score=145.65 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=102.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee---------------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...+|+++|++++|||||+++|++....+ .....+.|.+.....+..++..+.++||||+.+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~--- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD--- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH---
Confidence 34589999999999999999998532211 122235555555555667788999999999532
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHH-H----HHHHH
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-K----LEWYE 252 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~-~----~~~~~ 252 (348)
+...+...+..+|++++|+|+..+...+...++..+.. .++| +|+++||+|+.+..+..+ . ...+.
T Consensus 157 ------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~ 228 (478)
T PLN03126 157 ------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLS 228 (478)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 23344555679999999999999887777777777666 6788 778999999986443222 1 12222
Q ss_pred hc---CCCCeEEEecCCCCCCH
Q 018949 253 KF---TDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 253 ~~---~~~~~i~~vSA~~g~gi 271 (348)
.. ....+++++||.+|.++
T Consensus 229 ~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 229 SYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred hcCCCcCcceEEEEEccccccc
Confidence 21 12458999999988543
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=147.19 Aligned_cols=147 Identities=24% Similarity=0.203 Sum_probs=98.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec--------------------------------CCCCceEEeEEEEEeCCCee
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT--------------------------------NKPQTTRHRILGICSGPEYQ 164 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~~~ 164 (348)
+|+++|++++|||||+++|+.....+.. ...+.|.+.....+..++..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999744322110 11234455555566677889
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-- 242 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-- 242 (348)
+.++||||+.+ +...+...+..+|++++|+|+..+...+.......+... ...++++|+||+|+.+..
T Consensus 82 ~~liDtPGh~~---------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 82 FIVADTPGHEQ---------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred EEEEeCCCHHH---------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEecccccchHH
Confidence 99999999532 222333457899999999999988866665555555442 224688999999997532
Q ss_pred hHHHHHHHHH---hcCC--CCeEEEecCCCCCCHHH
Q 018949 243 EIAKKLEWYE---KFTD--VDEVIPVSAKYGHGVED 273 (348)
Q Consensus 243 ~~~~~~~~~~---~~~~--~~~i~~vSA~~g~gi~e 273 (348)
........+. ...+ ..+++++||++|.|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1222222222 2222 24799999999999986
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=139.93 Aligned_cols=185 Identities=22% Similarity=0.294 Sum_probs=119.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCceE-------------------E-eEEE-----------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTR-------------------H-RILG----------- 156 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~-------------------~-~~~~----------- 156 (348)
+...|+|.|.||+|||||++++. |.++..++..|.... . .+..
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 44589999999999999999864 233333333222210 0 1111
Q ss_pred --------EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC
Q 018949 157 --------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (348)
Q Consensus 157 --------~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (348)
.+...++.+.++||+|..+.... ....+|++++|++...+..-+. +..-. ....
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~------------i~~~aD~vlvv~~p~~gd~iq~--~k~gi----~E~a 196 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVGQSETA------------VAGMVDFFLLLQLPGAGDELQG--IKKGI----MELA 196 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCccchhH------------HHHhCCEEEEEecCCchHHHHH--HHhhh----hhhh
Confidence 01233578999999998753211 1457999999987433321111 11101 1233
Q ss_pred EEEEEeccCCCChhhHHHHHHHHHhcC---------CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC---
Q 018949 229 ILLVLNKKDLIKPGEIAKKLEWYEKFT---------DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE--- 296 (348)
Q Consensus 229 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~---------~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~--- 296 (348)
-++|+||+|+............+.... ...|++++||++|.|+++|++.|.+.++ +.++.+..++
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~~sg~l~~~r~ 273 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALTASGEFAARRR 273 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhccCChHHHHHH
Confidence 489999999986543333333333221 1158999999999999999999999876 5667777766
Q ss_pred CchHHHHHHHHHHHHHhhccCCC
Q 018949 297 HPERFFVGEIIREKIFMQYRNEV 319 (348)
Q Consensus 297 ~~~~~~~~e~ire~~~~~~~~ei 319 (348)
.+.++++.+++++++++.++...
T Consensus 274 ~~~~~~v~elire~l~~~~~~~~ 296 (332)
T PRK09435 274 EQQVDWMWEMVEEGLLDRLFADP 296 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCc
Confidence 78888999999999998776543
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=153.96 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=90.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCce---e--eec------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKL---S--IVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~---~--~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|++|+|||||+++|+.... . .+. ...++|.+.....+.+.+..++++||||+.+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 334899999999999999999973211 1 111 24567777766677778899999999996432
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
...+...+..+|++|+|+|+..+.+.++..++..+.. .++|+|+++||+|+..
T Consensus 89 ---------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 ---------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVPRIAFVNKMDRTG 141 (693)
T ss_pred ---------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 2235566789999999999999988888888887777 7799999999999874
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=133.41 Aligned_cols=156 Identities=26% Similarity=0.346 Sum_probs=95.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee------------cC------CCCceEEeEEEEE-----eCCCeeEEEEeCCCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV------------TN------KPQTTRHRILGIC-----SGPEYQMILYDTPGI 173 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~------------~~------~~~~t~~~~~~~~-----~~~~~~~~l~DtpG~ 173 (348)
+|+++|++|+|||||+++|++...... .+ ..+.|.......+ ......+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 699999999999999999986543211 00 0111211111111 133578999999996
Q ss_pred chhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC------h-h---h
Q 018949 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK------P-G---E 243 (348)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~------~-~---~ 243 (348)
.+ + ...+..++..+|++++|+|++++.......+...... .+.|+++|+||+|+.. . . .
T Consensus 82 ~~--f-------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~ 150 (213)
T cd04167 82 VN--F-------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFK 150 (213)
T ss_pred cc--h-------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHH
Confidence 43 2 1234455789999999999988775555444444443 4699999999999851 1 1 1
Q ss_pred HHHHHHHHHh---cCC------CC----eEEEecCCCCCCHH--------HHHHHHHHhCC
Q 018949 244 IAKKLEWYEK---FTD------VD----EVIPVSAKYGHGVE--------DIRDWILTKLP 283 (348)
Q Consensus 244 ~~~~~~~~~~---~~~------~~----~i~~vSA~~g~gi~--------eL~~~i~~~l~ 283 (348)
+.+..+.+.. ... +. .+++.||+.+.++. +|++.|.+.++
T Consensus 151 l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 151 LRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 1112222211 111 12 37888999987765 67776666554
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-16 Score=149.03 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=91.2
Q ss_pred ccccchhhh--HHhhcCceEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhh-hccccCCCCccCCcCC--ccccccccC
Q 018949 14 LFPHYSTLT--AYREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSN-QREMDLDDGDEMEFDD--ASSFLSLSE 88 (348)
Q Consensus 14 ~~~~~~~~~--~f~~~~i~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~d~~e~~~~~~--~~~~~~~~~ 88 (348)
|.||..-.| ||+++||.+.||||.++.+..+.....++-..-++...... ....+.|. +..... ..++..+..
T Consensus 218 l~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~--~i~r~~~d~~e~~~v~~ 295 (562)
T KOG1424|consen 218 LPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDL--KIARDKGDGEEIEDVEQ 295 (562)
T ss_pred CCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccccccchh--hhhhhcccccchhhHHh
Confidence 567777777 99999999999999997776665332221111111111111 11111110 000000 001100000
Q ss_pred CCCCCCCCCChhhhhhccccCCCCCCc-cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEE
Q 018949 89 KPDRNMASPDDYEIEEFDYASHPNHKS-GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMIL 167 (348)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l 167 (348)
....... ... -..+.++. ..||+||+|||||||+||+|.|.+...|+.+||.|++.++..+... +.|
T Consensus 296 -----~~~~s~~--~~~--~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~---v~L 363 (562)
T KOG1424|consen 296 -----LRLISAM--EPT--PTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPS---VCL 363 (562)
T ss_pred -----hhhhhcc--ccC--CCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCC---cee
Confidence 0000000 000 01222233 5899999999999999999999999999999999999999888754 899
Q ss_pred EeCCCCchhhhhh
Q 018949 168 YDTPGIIEKKIHM 180 (348)
Q Consensus 168 ~DtpG~~~~~~~~ 180 (348)
|||||++...+..
T Consensus 364 CDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 364 CDCPGLVFPSFSP 376 (562)
T ss_pred cCCCCccccCCCc
Confidence 9999998766554
|
|
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=131.11 Aligned_cols=158 Identities=22% Similarity=0.230 Sum_probs=108.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCce--EEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|||||+|+.++++..+... +.+|. .+.....++.+...+.++||+| +..+..+.. .+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~--y~ptied~y~k~~~v~~~~~~l~ilDt~g--~~~~~~~~~-------~~ 71 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED--YDPTIEDSYRKELTVDGEVCMLEILDTAG--QEEFSAMRD-------LY 71 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc--cCCCccccceEEEEECCEEEEEEEEcCCC--cccChHHHH-------Hh
Confidence 44899999999999999999999888633 33333 3334444556667899999999 444444433 33
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+..+|+.++|++.++.. +.....+..+.+... ..+|+++|+||+|+.....+. +....+..... ++++++||+.+
T Consensus 72 ~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-~~f~E~Sak~~ 150 (196)
T KOG0395|consen 72 IRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWG-CAFIETSAKLN 150 (196)
T ss_pred hccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcC-CcEEEeeccCC
Confidence 67889999999987654 333333333322221 558999999999998643332 22233333344 46999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.+++++|..+.+.+..
T Consensus 151 ~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 151 YNVDEVFYELVREIRL 166 (196)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999886643
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-15 Score=129.74 Aligned_cols=114 Identities=26% Similarity=0.355 Sum_probs=73.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||+++|.+.++.. ..+.++......... ..+..+.+|||||+. .. ...+..++.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~--~~-------~~~~~~~~~ 70 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHP--KL-------RDKLLETLK 70 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCH--HH-------HHHHHHHHh
Confidence 69999999999999999999876532 122222221111121 245779999999953 22 122344567
Q ss_pred Cc-cEEEEEecCCCCC---chHHHHHHHhccc---ccCCCCEEEEEeccCCCCh
Q 018949 195 NA-DCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 195 ~a-d~iv~VvD~~~~~---~~~~~~~~~~~~~---~~~~~p~ivv~NK~Dl~~~ 241 (348)
.+ +++|||+|++... .....++...+.. ...+.|+++|+||+|+...
T Consensus 71 ~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 71 NSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 77 9999999998753 2222333333221 1257999999999998754
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-16 Score=147.14 Aligned_cols=166 Identities=21% Similarity=0.237 Sum_probs=121.5
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+....+++++|.||||||||+|.+...+.. +.+++.||+....+.+++.-..++++||||+.+.+........+...-.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 445568999999999999999999988876 6899999999999999988889999999999886555444443333222
Q ss_pred hccCccEEEEEecCCCCC----chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH----HHHHHHHhcCCCCeEEEe
Q 018949 192 AGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~i~~v 263 (348)
..+---+|+|++|.+... ..+. .+...++.+..++|+|+|+||+|++.+.++. +.+..+..... .+++.+
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~-v~v~~t 321 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN-VKVVQT 321 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC-ceEEEe
Confidence 233445789999998644 2222 2333444445789999999999998765543 33344444333 489999
Q ss_pred cCCCCCCHHHHHHHHHH
Q 018949 264 SAKYGHGVEDIRDWILT 280 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~ 280 (348)
|+.+.+|+-++.....+
T Consensus 322 S~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACE 338 (620)
T ss_pred cccchhceeeHHHHHHH
Confidence 99999999886655443
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=123.64 Aligned_cols=157 Identities=21% Similarity=0.300 Sum_probs=111.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE---EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL---GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..++.++|.+-||||||+..+...+++..+ .|....+... ..-.+...++.+|||+| ++.++++ +.+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~riklqlwdtag--qerfrsi-------tks 77 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGYRIKLQLWDTAG--QERFRSI-------TKS 77 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCcEEEEEEeeccc--hHHHHHH-------HHH
Confidence 347999999999999999999998887544 2222222211 11233456799999999 7666554 667
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCC-EEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLP-ILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p-~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~ 266 (348)
|++++-++++|+|.++.. +....|+.+...... +.++ +.+|+.|+|+...+++. +..+.+....+. .++++||+
T Consensus 78 yyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVETSak 156 (213)
T KOG0091|consen 78 YYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVETSAK 156 (213)
T ss_pred HhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEEeccc
Confidence 789999999999998754 555566665544432 4455 46799999998766543 233444444454 78999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|+++-|..|.+.+
T Consensus 157 ~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 157 NGCNVEEAFDMLAQEI 172 (213)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 9999999999887654
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-15 Score=143.70 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=100.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCcee------------------------ee------cCCCCceEEeEEEEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IV------TNKPQTTRHRILGICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~------------------------~~------~~~~~~t~~~~~~~~~~~~~~ 164 (348)
..+|+++|+.++|||||+.+|+..... .+ ....+.|.+.....+..++..
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 347999999999999999998742110 00 112245555555556778889
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-------chHHHHHHHhcccccCCCC-EEEEEecc
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p-~ivv~NK~ 236 (348)
++++||||+.+ +...+...+..+|++++|+|+..+. ..+....+.++.. .++| +|+++||+
T Consensus 87 i~lIDtPGh~~---------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKm 155 (446)
T PTZ00141 87 FTIIDAPGHRD---------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKM 155 (446)
T ss_pred EEEEECCChHH---------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEcc
Confidence 99999999532 3344556678999999999998875 2455666666666 6776 67899999
Q ss_pred CCCC----hhhHHHHHHHHHh---cCC----CCeEEEecCCCCCCHHH
Q 018949 237 DLIK----PGEIAKKLEWYEK---FTD----VDEVIPVSAKYGHGVED 273 (348)
Q Consensus 237 Dl~~----~~~~~~~~~~~~~---~~~----~~~i~~vSA~~g~gi~e 273 (348)
|... .....+....+.. ..+ ..+++++||.+|+|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9532 2233333333332 112 36899999999999864
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-15 Score=151.28 Aligned_cols=150 Identities=23% Similarity=0.216 Sum_probs=99.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec----------CCCC----------------------ceEEeEEEEEeCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT----------NKPQ----------------------TTRHRILGICSGP 161 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~----------~~~~----------------------~t~~~~~~~~~~~ 161 (348)
...+|+++|++|+|||||+++|+.....+.. ...+ .|.+.....+..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 3348999999999999999999865433221 1223 3444444456667
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC-
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK- 240 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~- 240 (348)
+.++.++||||+.+ +...+...+..+|++++|+|+..+...+......++... ...|+|+|+||+|+.+
T Consensus 103 ~~~~~liDtPG~~~---------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 103 KRKFIVADTPGHEQ---------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVDY 172 (632)
T ss_pred CceEEEEECCChHH---------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEecccccc
Confidence 78899999999532 122233456899999999999887755544444444442 2357889999999974
Q ss_pred -hhhHHHHHHHHH---hcCCC--CeEEEecCCCCCCHHH
Q 018949 241 -PGEIAKKLEWYE---KFTDV--DEVIPVSAKYGHGVED 273 (348)
Q Consensus 241 -~~~~~~~~~~~~---~~~~~--~~i~~vSA~~g~gi~e 273 (348)
..........+. ...++ .+++++||++|.|+.+
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 222232323332 22222 4699999999999984
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=120.30 Aligned_cols=159 Identities=23% Similarity=0.265 Sum_probs=114.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeee-------cCCC--CceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-------TNKP--QTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLD 182 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-------~~~~--~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~ 182 (348)
.+..+|++.|+.++||||++.++.......+ +... .||.-.-.+.+.. ++..+.|+|||| |.++.-+.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG--q~RF~fm~ 85 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG--QERFKFMW 85 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC--cHHHHHHH
Confidence 3556999999999999999999988764221 1111 1333333333333 347899999999 55554433
Q ss_pred HHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEE
Q 018949 183 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIP 262 (348)
Q Consensus 183 ~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~ 262 (348)
. -+.+.+..+|+++|++.+.......+...+... ..+|++|++||.|+.+....+...+.+....-..|+++
T Consensus 86 ~-------~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~-~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 86 E-------ILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSR-NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIE 157 (187)
T ss_pred H-------HHhCCcceEEEEEecCCCcchHHHHHHHHHhhc-cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceee
Confidence 2 336789999999999988876556666666652 23999999999999987666666566655543458999
Q ss_pred ecCCCCCCHHHHHHHHHHh
Q 018949 263 VSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~ 281 (348)
++|..++|+.+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999998888765
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.4e-15 Score=142.33 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=104.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEEEE-----------------EeC---------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGI-----------------CSG--------------- 160 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~~~-----------------~~~--------------- 160 (348)
..+|+++|+.++|||||+.+|.+..... .....+.|...-... ...
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 3489999999999999999999743210 011111111100000 000
Q ss_pred -CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-CchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 161 -PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 161 -~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
-...+.++||||+. .+...+...+..+|++++|+|+..+ ...+....+..+... .-.|+|+|+||+|+
T Consensus 114 ~~~~~i~~IDtPGH~---------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi~~iIVvlNKiDl 183 (460)
T PTZ00327 114 TLKRHVSFVDCPGHD---------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDL 183 (460)
T ss_pred cccceEeeeeCCCHH---------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CCCcEEEEEecccc
Confidence 02368999999942 2344555667899999999999875 455444444444432 22468999999999
Q ss_pred CChhhHHHHHHHHHhc-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 239 IKPGEIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.+.....+....+... ....+++++||++|.|++.|++.|.+.++.
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 8755544444444332 234689999999999999999999987754
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=125.46 Aligned_cols=140 Identities=17% Similarity=0.213 Sum_probs=87.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCce---EEeEEEEEe-----CCCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT---RHRILGICS-----GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t---~~~~~~~~~-----~~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
+|+++|.++||||||++++.+..+.. ....|. .......+. ...+.+.+|||+| +..+..+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~--~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG--~e~~~~l~------ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGG--SESVKSTR------ 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCC--chhHHHHH------
Confidence 79999999999999999999887642 122221 111111121 2346799999999 44444433
Q ss_pred HHhhccCccEEEEEecCCCCC--chHHHHHHHhccc-------------------ccCCCCEEEEEeccCCCChhhHHH-
Q 018949 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-------------------HKDKLPILLVLNKKDLIKPGEIAK- 246 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-------------------~~~~~p~ivv~NK~Dl~~~~~~~~- 246 (348)
..+++.+|++|+|+|.++.. +....|+...... ...+.|++||+||+|+.+......
T Consensus 72 -~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~ 150 (202)
T cd04102 72 -AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGN 150 (202)
T ss_pred -HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchH
Confidence 34478999999999998764 4444554444321 114689999999999975432211
Q ss_pred ----HHHHHHhcCCCCeEEEecCCCC
Q 018949 247 ----KLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 247 ----~~~~~~~~~~~~~i~~vSA~~g 268 (348)
....+....+. +.+..+++.+
T Consensus 151 ~~~~~~~~ia~~~~~-~~i~~~c~~~ 175 (202)
T cd04102 151 LVLTARGFVAEQGNA-EEINLNCTNG 175 (202)
T ss_pred HHhhHhhhHHHhcCC-ceEEEecCCc
Confidence 12233333444 4566666654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=148.62 Aligned_cols=117 Identities=24% Similarity=0.276 Sum_probs=83.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|+.|+|||||+++|+.....+ ..+ ..+.|.......+.+.+..+++|||||+.+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 34489999999999999999997532110 000 1223333333445667889999999996431
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
...+..+++.+|++++|+|++.+.......++..+.. .++|+++|+||+|+...
T Consensus 87 ---------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 ---------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKMDRVGA 140 (687)
T ss_pred ---------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECCCCCCC
Confidence 2334556789999999999998876666666666555 67999999999998753
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-15 Score=117.55 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=108.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
.+.++|-.++|||||+|.+....+. .....|......-++.+...+.+||.|| +..+..+ +..+++.+
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gG--q~rfrsm-------WerycR~v 89 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--QPRFRSM-------WERYCRGV 89 (186)
T ss_pred eEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCC--CccHHHH-------HHHHhhcC
Confidence 6999999999999999988765443 2233344444444556678899999999 6555544 44568999
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~g~g 270 (348)
++++|++|++++. +.....+..++... -.++|++|.+||.|++.+-.-......+.-. .....++.+|++...|
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 9999999998754 33334454444332 2679999999999998754333333332211 1223579999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
++-+.+||.+.-
T Consensus 170 id~~~~Wli~hs 181 (186)
T KOG0075|consen 170 IDITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=146.07 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=107.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----ec----------C------CCCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT----------N------KPQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----~~----------~------~~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
+..+|+|+|++++|||||+++|+.....+ +. + ..+.|.......+.+++..+++|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 44489999999999999999986321110 10 0 012233333345667889999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE 252 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 252 (348)
+.+ +...+..++..+|++|+|+|++.+.......+...++. .++|+++++||+|+.... ..+....+.
T Consensus 90 ~~d---------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNKiD~~~~~-~~~ll~~i~ 157 (527)
T TIGR00503 90 HED---------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNKLDRDIRD-PLELLDEVE 157 (527)
T ss_pred hhh---------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECccccCCC-HHHHHHHHH
Confidence 632 22334556789999999999998887776777776666 679999999999986432 222233333
Q ss_pred hcC---CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCC
Q 018949 253 KFT---DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK 291 (348)
Q Consensus 253 ~~~---~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~ 291 (348)
... ...-.+|+ |...++..+.+.++..++.|+.
T Consensus 158 ~~l~~~~~~~~~PI------g~~~~f~gv~d~l~~~~~~y~~ 193 (527)
T TIGR00503 158 NELKINCAPITWPI------GCGKLFKGVYHLLKDETYLYQS 193 (527)
T ss_pred HHhCCCCccEEEEe------cCCCceeEEEEcccCcceecCc
Confidence 332 22234666 4456777788888877777754
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-14 Score=125.54 Aligned_cols=159 Identities=25% Similarity=0.263 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|.+|||||||++++.+..+.........+........... ...+.+|||+| +..+..+ +..++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g--q~~~~~~-------~~~y~~ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG--QEEYRSL-------RPEYYR 76 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC--HHHHHHH-------HHHHhc
Confidence 5899999999999999999999887632222222222222222221 56799999999 5444433 445578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhHHHH--------------HHHHHhc-CC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK--------------LEWYEKF-TD 256 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~--------------~~~~~~~-~~ 256 (348)
.++++++|+|.+... ......+...+.... .+.|+++|+||+|+......... ....... ..
T Consensus 77 ~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (219)
T COG1100 77 GANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVA 156 (219)
T ss_pred CCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhc
Confidence 999999999998522 334444444444432 36999999999999875421110 0000011 11
Q ss_pred CCeEEEecCC--CCCCHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAK--YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~--~g~gi~eL~~~i~~~l~ 283 (348)
...++.+|++ ++.|+.+++..+...+.
T Consensus 157 ~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 157 NPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 2237999999 99999999999887764
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-15 Score=122.54 Aligned_cols=160 Identities=24% Similarity=0.305 Sum_probs=109.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce----eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL----SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~----~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.|+|+|.-|+|||||+.+.-...- ........+|.-...+.+.....++.+||..| ++.-.++ +..+
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG--Qe~lrSl-------w~~y 89 (197)
T KOG0076|consen 19 SVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG--QESLRSL-------WKKY 89 (197)
T ss_pred hheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC--hHHHHHH-------HHHH
Confidence 599999999999999998643221 11112233444555555666678899999999 5443433 4456
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHH--hc--CCCCeEEEecC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVSA 265 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~~--~~~~~i~~vSA 265 (348)
+..|++++||+|++++. +.....+...... ...+.|+++.+||.|+.+..+..+....+. .. ....++.||||
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 88999999999998744 2211222222111 126899999999999988765554443333 22 23357899999
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 018949 266 KYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~ 285 (348)
.+|+||++-..|+...++..
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999888664
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.5e-15 Score=137.50 Aligned_cols=158 Identities=25% Similarity=0.310 Sum_probs=113.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee--------------ecCCCCceEEeEEEEEe-----CCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICS-----GPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~--------------~~~~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~~~~ 176 (348)
.+..|+-+-..|||||..+|+...... .....|.|.-.+...+. ++.+.++++||||+++.
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 378999999999999999987432211 12223444443333322 24588999999999887
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
.+.-. +.+..|.++++|||++.+.+.+.- .+.......+.-+|-|+||+||+.++ .+....++....+
T Consensus 90 sYEVS---------RSLAACEGalLvVDAsQGveAQTl--AN~YlAle~~LeIiPViNKIDLP~Ad-pervk~eIe~~iG 157 (603)
T COG0481 90 SYEVS---------RSLAACEGALLVVDASQGVEAQTL--ANVYLALENNLEIIPVLNKIDLPAAD-PERVKQEIEDIIG 157 (603)
T ss_pred EEEeh---------hhHhhCCCcEEEEECccchHHHHH--HHHHHHHHcCcEEEEeeecccCCCCC-HHHHHHHHHHHhC
Confidence 65432 336789999999999999876543 33222223678899999999998754 3445566666665
Q ss_pred CC--eEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 257 VD--EVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 257 ~~--~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
.. ..+.+||++|.|++++++.|.+.+|..
T Consensus 158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 158 IDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred CCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 53 479999999999999999999999863
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-15 Score=127.95 Aligned_cols=161 Identities=18% Similarity=0.168 Sum_probs=115.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..++++||..++|||+|+..+....+. ..+.+|--+... ..+. ...+.+.+|||+| ++.++.++..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG--qedYDrlRpl------ 72 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAG--QEDYDRLRPL------ 72 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCC--Cccccccccc------
Confidence 4458999999999999999988877654 333333333333 3342 5567799999999 6666655422
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-------------HHHHHHHHhcC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFT 255 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~~~~~~~~~ 255 (348)
.+.++|+++++++..++. ......|...++...++.|+|+|++|.||.+.... ......+.+.+
T Consensus 73 -sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~i 151 (198)
T KOG0393|consen 73 -SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEI 151 (198)
T ss_pred -CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHh
Confidence 478999999988887654 44445555566666689999999999999843211 12234555667
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
+...+++|||++..|+.++|+.........
T Consensus 152 ga~~y~EcSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 152 GAVKYLECSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred CcceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence 777899999999999999999988766543
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=135.66 Aligned_cols=90 Identities=24% Similarity=0.228 Sum_probs=71.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 176 (348)
...+|+|+|.||||||||+|+|.+.+. .++++|+||+.+..+.+...+ .++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 445899999999999999999988875 578999999999888876542 35899999999753
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
... ...+...++..++.+|++++|+|+.
T Consensus 99 a~~--g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASE--GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccc--hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 322 2233456667789999999999984
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=113.48 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=107.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+-.|+|..|||||.|+..+...++.... .+.+..-......+......+.+|||+| +++++ ..++++++.
T Consensus 13 kyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtag--qerfr-------avtrsyyrg 83 (215)
T KOG0097|consen 13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG--QERFR-------AVTRSYYRG 83 (215)
T ss_pred EEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeeccc--HHHHH-------HHHHHHhcc
Confidence 7889999999999999999988764211 1222222223334566778899999999 65544 446677899
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+-..++|+|.+... .....|+......-.++..+++++||.|+...+++ -+....+....+. -++++||++|.|++
T Consensus 84 aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl-~fle~saktg~nve 162 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-MFLEASAKTGQNVE 162 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCe-EEEEecccccCcHH
Confidence 99999999998654 33334444333222366778899999999865543 2233444444554 68999999999999
Q ss_pred HHHHHHHHh
Q 018949 273 DIRDWILTK 281 (348)
Q Consensus 273 eL~~~i~~~ 281 (348)
+.|-...+.
T Consensus 163 dafle~akk 171 (215)
T KOG0097|consen 163 DAFLETAKK 171 (215)
T ss_pred HHHHHHHHH
Confidence 987655443
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-15 Score=117.62 Aligned_cols=112 Identities=21% Similarity=0.361 Sum_probs=70.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee---eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
||+++|.+|||||||+++|.+.... ......+.+.......+......+.+||++|. ..+...... .+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~--~~~~~~~~~-------~~ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQ--EEFYSQHQF-------FL 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSS--HCHHCTSHH-------HH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcc--ceecccccc-------hh
Confidence 6999999999999999999987765 22333344444334444455556899999995 222222111 15
Q ss_pred cCccEEEEEecCCCCC--chHHHH--HHHhcccccCCCCEEEEEeccC
Q 018949 194 INADCIVVLVDACKAP--ERIDEI--LEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~--~~~~~~~~~~~~p~ivv~NK~D 237 (348)
..+|++++|+|.++.. ...... ++...+....+.|+++|+||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 7899999999998754 222111 1222222236699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=123.39 Aligned_cols=135 Identities=21% Similarity=0.236 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..|+++|.+|+|||||+|++.+.. ...+....++ . .+....+.++.++||||.. ..+...+.
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i-~i~~~~~~~i~~vDtPg~~------------~~~l~~ak 102 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----I-TVVTGKKRRLTFIECPNDI------------NAMIDIAK 102 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----E-EEEecCCceEEEEeCCchH------------HHHHHHHH
Confidence 379999999999999999998752 1112222222 1 1233467789999999932 12233357
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCChh-hHHHHHHHH-----HhcCCCCeEEEecCCC
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPG-EIAKKLEWY-----EKFTDVDEVIPVSAKY 267 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~-~~~~~~~~~-----~~~~~~~~i~~vSA~~ 267 (348)
.+|++++|+|++.+.......+...+.. .+.|.+ +|+||+|+.... ........+ .......+++++||++
T Consensus 103 ~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 103 VADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred hcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 8999999999998887767777777666 567854 599999997432 222222222 2234557999999998
Q ss_pred CC
Q 018949 268 GH 269 (348)
Q Consensus 268 g~ 269 (348)
+-
T Consensus 181 ~~ 182 (225)
T cd01882 181 HG 182 (225)
T ss_pred CC
Confidence 73
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-14 Score=121.73 Aligned_cols=118 Identities=21% Similarity=0.239 Sum_probs=81.3
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEec
Q 018949 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNK 235 (348)
Q Consensus 158 ~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK 235 (348)
+..+...+.+||||| +..+..+ ...+++.+|++|+|+|.++.. +....|+....+....+.|+++|+||
T Consensus 24 ~~~~~v~l~iwDt~G--~e~~~~~-------~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 24 LDEGPVRLQLWDTAG--QERFRSL-------IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred ECCEEEEEEEEECCC--hHHhhhc-------cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 344567899999999 4444433 234478999999999998753 44445555554433357899999999
Q ss_pred cCCCChhh--HHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 018949 236 KDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (348)
Q Consensus 236 ~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (348)
+|+..... ..+.... ....+ ..++++||++|.|++++|++|.+.++..+
T Consensus 95 ~DL~~~~~v~~~e~~~~-~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQK-AQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccccCCCHHHHHHH-HHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 99964321 1222222 22223 36899999999999999999999886533
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.5e-14 Score=128.11 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=79.3
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEe-------------CCCeeEEEEeCCCCchh
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICS-------------GPEYQMILYDTPGIIEK 176 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~-------------~~~~~~~l~DtpG~~~~ 176 (348)
+.....||+++|..|||||||++++.+..+... .++.+.+.......+. ...+.+.||||+| +.
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG--qE 94 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG--HE 94 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC--Ch
Confidence 445566999999999999999999998776421 1222222221111221 1246799999999 55
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccc------------cCCCCEEEEEeccCCCCh
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH------------KDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~------------~~~~p~ivv~NK~Dl~~~ 241 (348)
.+..+. ..+++.+|++|+|+|.++.. .....|+..+.... ..++|++||+||+|+...
T Consensus 95 rfrsL~-------~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCR-------SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhh-------HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 555443 34488999999999998744 33444443333211 125899999999999653
|
|
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=109.55 Aligned_cols=157 Identities=19% Similarity=0.189 Sum_probs=111.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+.+|-.++||||++..|.-.....+.+ |.......+.++...+++||..| +...+ ..++.|+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip----TvGFnvetVtykN~kfNvwdvGG--qd~iR-------plWrhYy 82 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGG--QDKIR-------PLWRHYY 82 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccccc----ccceeEEEEEeeeeEEeeeeccC--chhhh-------HHHHhhc
Confidence 34589999999999999999997765432222 22233445567778899999999 43322 3466778
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHH---HhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWY---EKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~i~~vSA~~ 267 (348)
....++|||+|+.+.. ++....+...+... ..+.|++|..||.|++.+....+....+ ......+.+.++||.+
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred cCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccccc
Confidence 9999999999997653 44444555544432 2578999999999998754433333222 2233445789999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+.+-+.++.+.+.
T Consensus 163 gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNLK 178 (180)
T ss_pred chhHHHHHHHHHhhcc
Confidence 9999999999987664
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=134.56 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=96.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCcee------------------------ee------cCCCCceEEeEEEEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IV------TNKPQTTRHRILGICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~------------------------~~------~~~~~~t~~~~~~~~~~~~~~ 164 (348)
..+|+++|+.++|||||+.+|+..... .+ ....+.|.+.....+..++..
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 86 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYY 86 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEE
Confidence 347999999999999999998732110 00 111234555544556677889
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-c------hHHHHHHHhcccccCCCC-EEEEEecc
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E------RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~------~~~~~~~~~~~~~~~~~p-~ivv~NK~ 236 (348)
++++||||+.+ +...+...+..+|++|+|+|++.+. + .+....+.++.. .++| +|+++||+
T Consensus 87 i~liDtPGh~d---------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKm 155 (447)
T PLN00043 87 CTVIDAPGHRD---------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKM 155 (447)
T ss_pred EEEEECCCHHH---------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcc
Confidence 99999999533 3344556678999999999998762 1 344445545544 5675 68899999
Q ss_pred CCCCh----hhHHHHHHHHH---hcCC----CCeEEEecCCCCCCHHH
Q 018949 237 DLIKP----GEIAKKLEWYE---KFTD----VDEVIPVSAKYGHGVED 273 (348)
Q Consensus 237 Dl~~~----~~~~~~~~~~~---~~~~----~~~i~~vSA~~g~gi~e 273 (348)
|+... ....+....+. ...+ ..+++++||.+|+|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 98631 22222222222 2222 35799999999999854
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-15 Score=118.42 Aligned_cols=162 Identities=19% Similarity=0.185 Sum_probs=105.4
Q ss_pred EEcCCCCChHHHHHHHhCCceeeecCCCCc-eEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~~~~~~~~~~~~~~-t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
++|.+++|||.|+-++-...+.. .....| ..+..... +....+.+++|||+| +++++++ +..|++++
T Consensus 2 llgds~~gktcllir~kdgafl~-~~fistvgid~rnkli~~~~~kvklqiwdtag--qerfrsv-------t~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLA-GNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG--QERFRSV-------THAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceec-CceeeeeeeccccceeccCCcEEEEEEeeccc--hHHHhhh-------hHhhhccc
Confidence 68999999999997766554432 111111 11111222 344567899999999 6666655 45668999
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
|.+++++|..+.. .....|+.+.-.-....+.+.+++||+|+...+.+ .+....+....+. |++++||++|-|++.
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i-pfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI-PFMETSAKTGFNVDL 150 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCC-CceeccccccccHhH
Confidence 9999999998654 44444444332222256788999999999653322 1222334444444 899999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCc
Q 018949 274 IRDWILTKLPLGPAYYPKD 292 (348)
Q Consensus 274 L~~~i~~~l~~~~~~~~~~ 292 (348)
.|-.|.+.+.......|++
T Consensus 151 af~~ia~~l~k~~~~~~~~ 169 (192)
T KOG0083|consen 151 AFLAIAEELKKLKMGAPPE 169 (192)
T ss_pred HHHHHHHHHHHhccCCCCC
Confidence 9999988776544444433
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=123.83 Aligned_cols=128 Identities=19% Similarity=0.229 Sum_probs=86.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-hhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~l~~~~~~~~~~~ 192 (348)
...+|+++|.+|||||||+|+|+|.....++...++|..........++..+.+|||||+.+... ..........+..+
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~ 109 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRY 109 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHH
Confidence 44589999999999999999999998766676767777666656666778999999999976532 11222233334444
Q ss_pred cc--CccEEEEEecCCCC-CchHHHHHHHhccc-ccC--CCCEEEEEeccCCCCh
Q 018949 193 GI--NADCIVVLVDACKA-PERIDEILEEGVGD-HKD--KLPILLVLNKKDLIKP 241 (348)
Q Consensus 193 ~~--~ad~iv~VvD~~~~-~~~~~~~~~~~~~~-~~~--~~p~ivv~NK~Dl~~~ 241 (348)
+. ..|+++||...+.. ....+..+.+.+.. ++. -.++++|+||+|...+
T Consensus 110 l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 110 LKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 43 57889998765432 23333334433332 221 2579999999998643
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-14 Score=111.85 Aligned_cols=161 Identities=20% Similarity=0.258 Sum_probs=113.4
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+..+|+++|-.|+||||++..|.+.++....++.+... ..+-..+.+.+++||..| +... ...+.
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~---k~v~~~g~f~LnvwDiGG--qr~I-------RpyWs 80 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT---KKVEYDGTFHLNVWDIGG--QRGI-------RPYWS 80 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce---EEEeecCcEEEEEEecCC--cccc-------chhhh
Confidence 33567799999999999999999999998765555544332 222233448899999999 4322 23456
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEec
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVS 264 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vS 264 (348)
.|+.+.|.+|||+|+++.. ++..+.+.+++...+ ..+|+.+..||.|+......++....+. -....+++-.||
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 7799999999999976532 444444555444322 6789999999999987655544332222 122345789999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 018949 265 AKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (348)
|.+++|+.+-.+|+.....
T Consensus 161 als~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred cccccCccCcchhhhcCCC
Confidence 9999999999999887654
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-14 Score=116.49 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=103.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE----eEEEEEeC---------CCeeEEEEeCCCCchhhhhhhHH
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----RILGICSG---------PEYQMILYDTPGIIEKKIHMLDS 183 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~----~~~~~~~~---------~~~~~~l~DtpG~~~~~~~~l~~ 183 (348)
+...+|.+||||||++.++...++.. ...+|.. ....+++. ..+.+.+|||+| +++++++-.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~---qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG--QERFRSLTT 85 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNT---QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG--QERFRSLTT 85 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccc---eeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc--HHHHHHHHH
Confidence 56778999999999999988776531 1111110 01112221 124689999999 888887766
Q ss_pred HHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhccc--ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCC
Q 018949 184 MMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVD 258 (348)
Q Consensus 184 ~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~--~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~ 258 (348)
.+ +++|-..++++|.++.. -....|+. .++. ...+..+|+++||+|+.+.+.+ +.....+....+.
T Consensus 86 AF-------fRDAMGFlLiFDlT~eqSFLnvrnWlS-QL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl- 156 (219)
T KOG0081|consen 86 AF-------FRDAMGFLLIFDLTSEQSFLNVRNWLS-QLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL- 156 (219)
T ss_pred HH-------HHhhccceEEEeccchHHHHHHHHHHH-HHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC-
Confidence 55 56777889999997643 23333333 3332 2356678999999999986655 3345566666676
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
|+|++||.+|.|+++-.+.+...+.
T Consensus 157 PYfETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 157 PYFETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred CeeeeccccCcCHHHHHHHHHHHHH
Confidence 9999999999999998877776553
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=140.83 Aligned_cols=109 Identities=23% Similarity=0.245 Sum_probs=78.2
Q ss_pred EcCCCCChHHHHHHHhCCceeee-----------cC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHH
Q 018949 121 LGKPNVGKSTLANQMIGQKLSIV-----------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 183 (348)
Q Consensus 121 ~G~~~~GKSsLin~l~~~~~~~~-----------~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~ 183 (348)
+|++|+|||||+++|+.....+. .+ ..+.|.......+.+++..+++|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 59999999999999965432211 11 123444444455667889999999999643
Q ss_pred HHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 184 ~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+...+..++..+|++++|+|++.+.......++..+.. .++|+++|+||+|+..
T Consensus 73 -~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 73 -FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred -HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 12234455789999999999998876666656555555 6799999999999874
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=126.57 Aligned_cols=119 Identities=21% Similarity=0.223 Sum_probs=89.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee---------------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTN------KPQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~---------------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
+..+.+|+-+|.+|||||..+|+--..++ .++ ..|.+.....-.+.+.+..++|+||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 44479999999999999999976211111 111 112223333344678899999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
+.+.+ +.+.+.+-.+|.+|+|+|+..+.+.+...+.+.++. .++|++-++||+|.....+
T Consensus 91 HeDFS---------EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 91 HEDFS---------EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL--RDIPIFTFINKLDREGRDP 150 (528)
T ss_pred ccccc---------hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh--cCCceEEEeeccccccCCh
Confidence 75543 334455678999999999999999999999999998 8999999999999865443
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-13 Score=121.32 Aligned_cols=120 Identities=29% Similarity=0.372 Sum_probs=77.7
Q ss_pred eEEEEeCCCCchhh-hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhc---ccccCCCCEEEEEeccCCC
Q 018949 164 QMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 164 ~~~l~DtpG~~~~~-~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~---~~~~~~~p~ivv~NK~Dl~ 239 (348)
.+.++||||..+.. +......+.+...... ++++++|+|++......+......+ .....++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 69999999964321 2333333333332221 8999999999765544332222211 1112579999999999998
Q ss_pred ChhhHHHHHHHH----------------------------HhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 240 KPGEIAKKLEWY----------------------------EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 240 ~~~~~~~~~~~~----------------------------~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
+..+.......+ .......+++++||+++.|+++|+++|.+.++.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 765543332222 2223345889999999999999999999988764
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.5e-13 Score=120.88 Aligned_cols=130 Identities=16% Similarity=0.214 Sum_probs=81.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC--------CCCce-EEeEEEEEeCCC--eeEEEEeCCCCchhhh-----h
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTT-RHRILGICSGPE--YQMILYDTPGIIEKKI-----H 179 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~--------~~~~t-~~~~~~~~~~~~--~~~~l~DtpG~~~~~~-----~ 179 (348)
.+|+++|.+|+|||||+|+|++..+..... ...|+ .......+..++ ..+.+|||||+.+... .
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 389999999999999999999987654321 22332 222233333334 5799999999865321 1
Q ss_pred hhHHHHHHHH-------H-----hhc--cCccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhH
Q 018949 180 MLDSMMMKNV-------R-----SAG--INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (348)
Q Consensus 180 ~l~~~~~~~~-------~-----~~~--~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 244 (348)
.+...+.... . ..+ .++|+|+|+++.+. +....+..+++.+. .++|+++|+||+|+....++
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHH
Confidence 1111111111 0 111 25899999999874 45555555555554 36899999999999876554
Q ss_pred HHHH
Q 018949 245 AKKL 248 (348)
Q Consensus 245 ~~~~ 248 (348)
....
T Consensus 162 ~~~k 165 (276)
T cd01850 162 KEFK 165 (276)
T ss_pred HHHH
Confidence 4333
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=129.21 Aligned_cols=212 Identities=19% Similarity=0.203 Sum_probs=137.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-----------ec----CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----------VT----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+|+|+-+...|||||+.+|+...... -+ ...+.|.-....-+.+++..++++||||+.+..
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG---- 82 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG---- 82 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc----
Confidence 79999999999999999998654221 01 112344444444577889999999999976533
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh---HHHHHHHHHh-----
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEK----- 253 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~----- 253 (348)
.++.+.+.-.|.|+++||+..++..+.+.+..-.-+ .+.+-|+|+||+|.+.++. +.+....+..
T Consensus 83 -----GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d 155 (603)
T COG1217 83 -----GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD 155 (603)
T ss_pred -----chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh
Confidence 223444678999999999999998887776654333 5777799999999987543 2222222222
Q ss_pred -cCCCCeEEEecCCCC----------CCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHH-----H-HHHHHhhcc
Q 018949 254 -FTDVDEVIPVSAKYG----------HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEI-----I-REKIFMQYR 316 (348)
Q Consensus 254 -~~~~~~i~~vSA~~g----------~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~-----i-re~~~~~~~ 316 (348)
...+ |++..||+.| .++.-||+.|.+.++.... .+ +.|.++.+..+ + |-.+-.-.+
T Consensus 156 eQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~-~~-----d~PlQ~qvt~Ldyn~y~GrIgigRi~~ 228 (603)
T COG1217 156 EQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG-DL-----DEPLQMQVTQLDYNSYVGRIGIGRIFR 228 (603)
T ss_pred hhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC-CC-----CCCeEEEEEeeccccccceeEEEEEec
Confidence 2233 8899999887 4788899999999986431 11 22222211100 0 001112233
Q ss_pred CCCCceEEEEeeEEEeccceEEEeeecccc
Q 018949 317 NEVPYACQVCNLTFQHWLIFVEFNAFLNFC 346 (348)
Q Consensus 317 ~eip~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (348)
..+--+.+|.+..-.......+++.+|+|.
T Consensus 229 G~vk~~q~V~~i~~~g~~~~gri~kllgf~ 258 (603)
T COG1217 229 GTVKPNQQVALIKSDGTTENGRITKLLGFL 258 (603)
T ss_pred CcccCCCeEEEEcCCCcEEeeEEEeeeecc
Confidence 445556666666666667788888888775
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.5e-14 Score=122.88 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=88.2
Q ss_pred eeEEEEeCCCCchh-hhhhhHHHHHHHHHhhccCccEEEEEecCCCCC---chHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 163 YQMILYDTPGIIEK-KIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 163 ~~~~l~DtpG~~~~-~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
...+++||||.++. .+...+..+.+... .....+++||+|..+.. .-+...+...--..+.+.|+|+|.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~la--ss~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLA--SSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHh--hcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 45899999997652 22222233333322 23556899999986543 22233332211112278999999999999
Q ss_pred CChhhHHHHHHH-------HH-------------------hcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCc
Q 018949 239 IKPGEIAKKLEW-------YE-------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292 (348)
Q Consensus 239 ~~~~~~~~~~~~-------~~-------------------~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~ 292 (348)
.+..-..+.... +. .+......+.||+.+|.|.++++.++...+.+....|.++
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ykp~ 273 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYKPE 273 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhhhH
Confidence 876433222211 11 1223347899999999999999999998876544334333
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcc
Q 018949 293 IVSEHPERFFVGEIIREKIFMQYR 316 (348)
Q Consensus 293 ~~~~~~~~~~~~e~ire~~~~~~~ 316 (348)
............+..+.+-++.++
T Consensus 274 ~Ek~k~~k~~~ee~~k~k~le~l~ 297 (366)
T KOG1532|consen 274 YEKKKAEKRLAEEERKKKQLEKLM 297 (366)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHH
Confidence 333333333344444555555444
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-13 Score=124.34 Aligned_cols=150 Identities=21% Similarity=0.250 Sum_probs=101.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC------------------------ceeeecCCC------CceEEeEEEEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ------------------------KLSIVTNKP------QTTRHRILGICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~------------------------~~~~~~~~~------~~t~~~~~~~~~~~~~~ 164 (348)
..+++++|++++|||||+-+|+.. +++.+.+.. |.|.+.....+..+.+.
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 348999999999999999998632 122333322 44555555556677788
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-------CchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-------~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
+.++||||+.+ +...+.....+||++|+|+|+..+ ...+.....-+.+.++ -..+||++||+|
T Consensus 87 ~tIiDaPGHrd---------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD 156 (428)
T COG5256 87 FTIIDAPGHRD---------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMD 156 (428)
T ss_pred EEEeeCCchHH---------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEccc
Confidence 99999999543 334455557899999999999877 4556666555555532 346889999999
Q ss_pred CCC--hhhHHHHHH---HHHhcCCC----CeEEEecCCCCCCHHHH
Q 018949 238 LIK--PGEIAKKLE---WYEKFTDV----DEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 238 l~~--~~~~~~~~~---~~~~~~~~----~~i~~vSA~~g~gi~eL 274 (348)
+++ ....++... .+.+..+. .+++||||.+|.|+.+-
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 985 222222222 23333222 46999999999998753
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-13 Score=124.57 Aligned_cols=88 Identities=24% Similarity=0.288 Sum_probs=70.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 178 (348)
.+|+|+|.||||||||+|+|++.+ ..++++|+||+.+..+++...+ ..+.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 379999999999999999999998 4578999999998887766443 2589999999975332
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
....+...++..++.||++++|+|+.
T Consensus 82 --~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 --KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred --hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 22334456777789999999999985
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-14 Score=125.28 Aligned_cols=159 Identities=23% Similarity=0.206 Sum_probs=111.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+.|++||++|+|||||+++|.+.... ..+....|.++...... ..+..+.+.||-|+.+.-+..+-..| +.++.
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF-~ATLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAF-QATLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHH-HHHHH
Confidence 34568999999999999999999965543 23444455544332222 23567899999999887666666665 45566
Q ss_pred hccCccEEEEEecCCCCC-chHHHHHHHhcccccC-CCC----EEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAP-ERIDEILEEGVGDHKD-KLP----ILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~-~~p----~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
....+|++++|+|.+++. +.+...++..++..+- ..| +|=|-||+|......-.+ .. ..+++||
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n--~~v~isa 323 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KN--LDVGISA 323 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cC--Ccccccc
Confidence 778999999999999987 4455566666666321 222 566888888765332111 11 2589999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
++|+|++++++.+...+.
T Consensus 324 ltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccCccHHHHHHHHHHHhh
Confidence 999999999999887654
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.7e-13 Score=122.68 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=68.8
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCe-----------------eEEEEeCCCCchhhhhh
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-----------------QMILYDTPGIIEKKIHM 180 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~DtpG~~~~~~~~ 180 (348)
|+|+|.||||||||+|+|++.+. .++++|++|..+..+.+...+. .+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-
Confidence 68999999999999999999987 5789999999988877665443 4999999999754321
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCC
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
...+...++..++.+|++++|+|+.
T Consensus 79 -~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 -GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred -hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 2233345667789999999999974
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-13 Score=104.17 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=100.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
|++++|..|+|||||.+++.|..... ..|.- ..++. --.+||||..-. +..+.....-...++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-----kKTQA---ve~~d----~~~IDTPGEy~~-----~~~~Y~aL~tt~~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-----KKTQA---VEFND----KGDIDTPGEYFE-----HPRWYHALITTLQDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-----cccce---eeccC----ccccCCchhhhh-----hhHHHHHHHHHhhcc
Confidence 79999999999999999999976431 11111 11111 236899994221 122333344456799
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|-.+.++.+.....+... ..+|+|-|++|.|+....++......+.... ..++|.+|+..+.|+++|++
T Consensus 66 dvi~~v~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 66 DVIIYVHAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDADISLVKRWLREAG-AEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred ceeeeeecccCccccCCcccccc-----cccceEEEEecccccchHhHHHHHHHHHHcC-CcceEEEeccCcccHHHHHH
Confidence 99999999987765544333322 3466999999999997777776666666555 66999999999999999999
Q ss_pred HHHHh
Q 018949 277 WILTK 281 (348)
Q Consensus 277 ~i~~~ 281 (348)
++...
T Consensus 140 ~L~~~ 144 (148)
T COG4917 140 YLASL 144 (148)
T ss_pred HHHhh
Confidence 98753
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-13 Score=128.02 Aligned_cols=174 Identities=17% Similarity=0.161 Sum_probs=118.4
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..+..||+++|..|+||||||-+++...+.. ...+......+..-+..+..+..++||+--.+.. .....
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~-~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~---------~~l~~ 75 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVD-AVPRRLPRILIPADVTPENVPTSIVDTSSDSDDR---------LCLRK 75 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccc-cccccCCccccCCccCcCcCceEEEecccccchh---------HHHHH
Confidence 3466799999999999999999999988652 2222222333334445566779999998532211 12234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhccccc---CCCCEEEEEeccCCCChhhH--H-HHHHHHHhcCCCCeEEEe
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEI--A-KKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~--~-~~~~~~~~~~~~~~i~~v 263 (348)
.+++||++++|+..+++. ......|+.+++... .++|+|+|+||+|....... + .+...+..+.....++.|
T Consensus 76 EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciec 155 (625)
T KOG1707|consen 76 EIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIEC 155 (625)
T ss_pred HHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhh
Confidence 468999999999887643 555667788887765 68999999999998753211 1 233334444444567999
Q ss_pred cCCCCCCHHHHHHHHHHhCCC-CCCCCCCcccC
Q 018949 264 SAKYGHGVEDIRDWILTKLPL-GPAYYPKDIVS 295 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~-~~~~~~~~~~~ 295 (348)
||++-.++.++|.+..+.+-. ..+.|..+...
T Consensus 156 SA~~~~n~~e~fYyaqKaVihPt~PLyda~~qe 188 (625)
T KOG1707|consen 156 SALTLANVSELFYYAQKAVIHPTSPLYDAEEQE 188 (625)
T ss_pred hhhhhhhhHhhhhhhhheeeccCcccccccccc
Confidence 999999999999999887743 23345444433
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=117.16 Aligned_cols=126 Identities=19% Similarity=0.261 Sum_probs=81.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
....+|+++|.+|+||||++|+|+|.+...++....++..........++..+.+|||||+.+.. .........+..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHHHHHH
Confidence 35568999999999999999999999876666665555544444444578899999999986532 2222222222222
Q ss_pred c--cCccEEEEEecCCC-CCchHHHHHHHhcccc-c--CCCCEEEEEeccCCCC
Q 018949 193 G--INADCIVVLVDACK-APERIDEILEEGVGDH-K--DKLPILLVLNKKDLIK 240 (348)
Q Consensus 193 ~--~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~-~--~~~p~ivv~NK~Dl~~ 240 (348)
+ ...|+++||...+. .....+..+.+.+... + --.+.|||+|+.|..+
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2 36899999955432 2333333344433332 1 2357899999999764
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=135.39 Aligned_cols=144 Identities=23% Similarity=0.236 Sum_probs=96.7
Q ss_pred CChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC------------------CeeEEEEeCCCCchhhhhhhHHHHHH
Q 018949 126 VGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKKIHMLDSMMMK 187 (348)
Q Consensus 126 ~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~l~DtpG~~~~~~~~l~~~~~~ 187 (348)
++||||+.+|.+.+++ .....+.|++.-...+..+ -..+.+|||||+ ..+..+.
T Consensus 472 ~~KTtLLD~iR~t~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh--e~F~~lr----- 543 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH--EAFTSLR----- 543 (1049)
T ss_pred cccccHHHHHhCCCcc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc--HHHHHHH-----
Confidence 3599999999998875 3344555655432222211 123899999994 4444332
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh--------------HHHHHH----
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--------------IAKKLE---- 249 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--------------~~~~~~---- 249 (348)
...+..+|++++|+|++++...+.......+.. .++|+++|+||+|+..... ......
T Consensus 544 --~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 544 --KRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred --HhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 233678999999999998877766666666666 6789999999999963210 000011
Q ss_pred -------HH-------------HhcCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 250 -------WY-------------EKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 250 -------~~-------------~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
.+ ....+..+++++||++|+|+++|+.+|...
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 11 123345689999999999999999988653
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-12 Score=115.60 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=111.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-----------eecCCCCceEEeE-----------EEEEeCC------CeeE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----------IVTNKPQTTRHRI-----------LGICSGP------EYQM 165 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-----------~~~~~~~~t~~~~-----------~~~~~~~------~~~~ 165 (348)
-..+|+.+|+...|||||..+|.|-.-. +.-.+..++.... ...+... -..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 3458999999999999999999874321 1001111111100 0000000 1358
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 244 (348)
.++|+||+ ..++..+++-..-.|++++|+.++.+. +.+....+..+.-. .-+.+|+|-||+|+++.+..
T Consensus 89 SfVDaPGH---------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 89 SFVDAPGH---------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred EEeeCCch---------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccceecHHHH
Confidence 89999994 224556666667889999999998765 55555444433332 23678999999999998776
Q ss_pred HHHHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCC
Q 018949 245 AKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 245 ~~~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (348)
.+..++++++. ...|++|+||..+.|++.|+++|.+.++....
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 66666666543 33599999999999999999999999986443
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-12 Score=119.03 Aligned_cols=222 Identities=17% Similarity=0.172 Sum_probs=130.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC----cee-----------eecCCCC---ceEEeEE---E---E--EeCCCeeEEEEe
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ----KLS-----------IVTNKPQ---TTRHRIL---G---I--CSGPEYQMILYD 169 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~----~~~-----------~~~~~~~---~t~~~~~---~---~--~~~~~~~~~l~D 169 (348)
..|+++|+.++|||||+|+|.+. +.. .+++.+| +|.++.. . + ...-..++.++|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 37999999999999999999988 655 5677788 5544433 1 1 112236799999
Q ss_pred CCCCchhhhhhhHHHHHHH----------------------HHhhcc-CccEEEEEe-cCC------CCCchHHHHHHHh
Q 018949 170 TPGIIEKKIHMLDSMMMKN----------------------VRSAGI-NADCIVVLV-DAC------KAPERIDEILEEG 219 (348)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~----------------------~~~~~~-~ad~iv~Vv-D~~------~~~~~~~~~~~~~ 219 (348)
|+|+..... ++..-.+. +++.+. ++|+.++|. |++ .......+.+...
T Consensus 98 cvG~~v~Ga--lG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 98 CVGYTVKGA--LGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred CCCcccCCC--ccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999854221 11000011 444466 899999998 875 3344555666677
Q ss_pred cccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC--CCCHHHHHHHHHHhCCCC-----CCCCCCc
Q 018949 220 VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTKLPLG-----PAYYPKD 292 (348)
Q Consensus 220 ~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~--g~gi~eL~~~i~~~l~~~-----~~~~~~~ 292 (348)
++. .++|+++|+||+|-.... .......+....+ .|++++|+.. .+.+..+++.++-..|-. .+.|-..
T Consensus 176 Lk~--~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL~EFPv~Ei~~~~P~Wve~ 251 (492)
T TIGR02836 176 LKE--LNKPFIILLNSTHPYHPE-TEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVLYEFPILEINIDLPSWVEV 251 (492)
T ss_pred HHh--cCCCEEEEEECcCCCCch-hHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHHhcCCceEEEeeCchHHHh
Confidence 777 789999999999943322 2223334444444 4777777654 345555555554333210 0111111
Q ss_pred ccCCCchHHHHHHHHHHHHHh---------h--ccCCCCceEEEEeeEEEeccceEEEeeec
Q 018949 293 IVSEHPERFFVGEIIREKIFM---------Q--YRNEVPYACQVCNLTFQHWLIFVEFNAFL 343 (348)
Q Consensus 293 ~~~~~~~~~~~~e~ire~~~~---------~--~~~eip~~~~~~~~~~~~~~~~~~~~~~~ 343 (348)
...++..+..+-+.+++.+-. . ...+.+|.....++.+..-.+.+++..-+
T Consensus 252 L~~~Hwlk~~~~~~i~~~~~~i~~irDv~~~~~~~~~~e~i~~~~l~~i~lg~G~~~i~~~~ 313 (492)
T TIGR02836 252 LDENHWLKENFQSSVKETVKDVYRLRDVDNVVGQLKENEFIESVGLAGIEMGEGVAEIDLYA 313 (492)
T ss_pred cCCCchHHHHHHHHHHHHHHhhhHHhhHHhhhccccccchhhhheeeeEecCCcEEEEEEEc
Confidence 112222222222233332111 1 12467888888888888877777776443
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=102.13 Aligned_cols=163 Identities=21% Similarity=0.227 Sum_probs=110.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC---CeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+|+++|.-++|||+++..++..+....+....|-.+.+...+..+ ...+.+.||.|+... .. +.-+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~-------eLpr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQ-------ELPR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hh-------hhhH
Confidence 556999999999999999999987665444555555555554444322 346999999998443 12 2233
Q ss_pred hhccCccEEEEEecCCCCCchHH-HHHHHhcccc--cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 191 SAGINADCIVVLVDACKAPERID-EILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~-~~~~~~~~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.++.-+|+.++|++..+...-+. +.+...+... +..+|+++++||+|+..+.+......+..........++++|..
T Consensus 80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEecc
Confidence 45788999999999987552221 1222222221 26799999999999976655443333333333334679999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
...+-+.|.++...+..
T Consensus 160 R~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLHQ 176 (198)
T ss_pred chhhhhHHHHHHHhccC
Confidence 99999999999887743
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-13 Score=106.20 Aligned_cols=158 Identities=17% Similarity=0.226 Sum_probs=107.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..++.++|--|+||||++-++--.+....-++++. ....+..++.++.+||..| +.... ..++.|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigf----nve~v~yKNLk~~vwdLgg--qtSir-------PyWRcYy 83 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGF----NVETVPYKNLKFQVWDLGG--QTSIR-------PYWRCYY 83 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCc----CccccccccccceeeEccC--ccccc-------HHHHHHh
Confidence 555899999999999999988765554322333333 2334455778899999999 43322 3356678
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCCh---hhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP---GEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.+.|.+|||||+++.. ......+...+.+. ..+..+++++||.|.... .+....+...+-......+|.+||.+
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccc
Confidence 9999999999998754 22223333333331 145778899999998653 33333332222233446899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|+|++...+|+.+.++.
T Consensus 164 g~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ccCCcHHHHHHHHHHhc
Confidence 99999999999987643
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.4e-13 Score=117.95 Aligned_cols=184 Identities=20% Similarity=0.272 Sum_probs=103.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCC--Cce------------------EEeEEEE----------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP--QTT------------------RHRILGI---------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~--~~t------------------~~~~~~~---------- 157 (348)
+..+|+|.|+||+|||||+++|. |.++...+..| ..| ..++...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 45589999999999999999985 44444332222 111 1111111
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCC
Q 018949 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDK 226 (348)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~ 226 (348)
+...++.++++.|.|.+|.... ...-+|.+++|+-...+. +....-+++.
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~------------I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------- 168 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD------------IADMADTVVLVLVPGLGDEIQAIKAGIMEI------- 168 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH------------HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH------------HHHhcCeEEEEecCCCccHHHHHhhhhhhh-------
Confidence 2334578999999998874321 146889999998776544 3333334333
Q ss_pred CCEEEEEeccCCCChhhHHHH-HHHHHhc---CC--CCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchH
Q 018949 227 LPILLVLNKKDLIKPGEIAKK-LEWYEKF---TD--VDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPER 300 (348)
Q Consensus 227 ~p~ivv~NK~Dl~~~~~~~~~-~~~~~~~---~~--~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~ 300 (348)
+-|+|+||+|+......... ...+... .. ..|++.+||.++.|+++|++.|.+..........-+.......+
T Consensus 169 -aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~~~~rr~~q~~ 247 (266)
T PF03308_consen 169 -ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGELEERRREQAR 247 (266)
T ss_dssp --SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred -ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 34899999996654432222 2222211 11 24899999999999999999998744211000000111122344
Q ss_pred HHHHHHHHHHHHhhccC
Q 018949 301 FFVGEIIREKIFMQYRN 317 (348)
Q Consensus 301 ~~~~e~ire~~~~~~~~ 317 (348)
.++.+.+++.+.+.++.
T Consensus 248 ~~~~~~~~~~l~~~~~~ 264 (266)
T PF03308_consen 248 REMWELIEEELLERLRA 264 (266)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56777777777776653
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.9e-12 Score=113.04 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC--cee----eecCCCCceEEeEEEEE---------eCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ--KLS----IVTNKPQTTRHRILGIC---------SGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~--~~~----~~~~~~~~t~~~~~~~~---------~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+++++|+..+|||||..+|..- ..+ ..+...+.|.+.-...+ ..+..++.++||||+.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa------ 81 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA------ 81 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH------
Confidence 58999999999999999998632 111 12333344443322111 2345678999999942
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhH----HHHHHHHHh---
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEK--- 253 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~~~~~~~--- 253 (348)
.+.+.......-.|+.++|+|+..+.+.+....+-.-.. .....+||+||+|....... ++....+.+
T Consensus 82 ---sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 82 ---SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred ---HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 233445555667899999999998876655443322222 34567999999998765332 222222222
Q ss_pred ---cCCCCeEEEecCCCC----CCHHHHHHHHHHhCCC
Q 018949 254 ---FTDVDEVIPVSAKYG----HGVEDIRDWILTKLPL 284 (348)
Q Consensus 254 ---~~~~~~i~~vSA~~g----~gi~eL~~~i~~~l~~ 284 (348)
..+..|++++||+.| +++.+|.+.+...+..
T Consensus 157 ~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 157 STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 345579999999999 8999999999988754
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=133.53 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=82.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE---------------EeE--EEEEe--------CCCeeEEEE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRI--LGICS--------GPEYQMILY 168 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~---------------~~~--~~~~~--------~~~~~~~l~ 168 (348)
+..+|+|+|+.++|||||+++|++....+.....+++. ... ...+. ..+..++++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 33489999999999999999998744322222222222 111 11121 125679999
Q ss_pred eCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
||||+.+ +...+...+..+|++|+|+|+..+...+.+.++..+.. .++|+|+++||+|+.
T Consensus 98 DtPG~~~---------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVD---------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHh---------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--cCCCEEEEEEChhhh
Confidence 9999644 23445666899999999999999988777777777766 678999999999997
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-12 Score=132.58 Aligned_cols=115 Identities=23% Similarity=0.279 Sum_probs=79.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCC---------------CceEEeEEE--E--EeCCCeeEEEEeCCCCc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP---------------QTTRHRILG--I--CSGPEYQMILYDTPGII 174 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~---------------~~t~~~~~~--~--~~~~~~~~~l~DtpG~~ 174 (348)
+..+|+++|+.++|||||+++|+.....+..... +.|...... . ...++..++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 3448999999999999999999754322111111 112111111 1 13346789999999975
Q ss_pred hhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
+. ...+...+..+|++|+|+|+..+.....+.++..... .+.|.|+++||+|+.
T Consensus 99 df---------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DF---------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--ERVKPVLFINKVDRL 152 (731)
T ss_pred Ch---------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--cCCCeEEEEECchhh
Confidence 42 2345566789999999999998887777777666544 467889999999986
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.3e-12 Score=117.49 Aligned_cols=156 Identities=19% Similarity=0.140 Sum_probs=121.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce--eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.|+..|+...|||||+.++.|..- ......-++|.+.-......++..+.++|.||+.+ +...+...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~---------~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD---------FISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH---------HHHHHHhhhc
Confidence 488999999999999999998642 22345668888887777777778999999999633 2334455577
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC--CCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT--DVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~i~~vSA~~g~gi~ 272 (348)
..|.+++|||++++...+....+..+..+ .....++|+||+|+.+...++....++.... ...+++.+|+.+|+|++
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdll-gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLL-GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIE 151 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHhc-CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHH
Confidence 89999999999999988887777777763 2234599999999998766665555554433 34578999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
+|.+.|.++.
T Consensus 152 ~Lk~~l~~L~ 161 (447)
T COG3276 152 ELKNELIDLL 161 (447)
T ss_pred HHHHHHHHhh
Confidence 9999999877
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-12 Score=132.88 Aligned_cols=115 Identities=23% Similarity=0.238 Sum_probs=81.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCc---------------eEEeEE--EEE--------------eCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT---------------TRHRIL--GIC--------------SGPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~---------------t~~~~~--~~~--------------~~~~ 162 (348)
+..+|+|+|+.++|||||+++|+.....+.....+. |..... ..+ ...+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 444899999999999999999986543221112211 111111 111 1136
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
..++++||||+.+. ...+...+..+|++|+|+|+..+...+.+.++..+.. .++|+++++||+|+.
T Consensus 98 ~~inliDtPGh~dF---------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDF---------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHH---------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--CCCCEEEEEECCccc
Confidence 77899999996442 2344566789999999999999988877777777766 789999999999997
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.4e-12 Score=107.11 Aligned_cols=112 Identities=29% Similarity=0.326 Sum_probs=71.3
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE----------------------------------------
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI---------------------------------------- 157 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~---------------------------------------- 157 (348)
|+++|..++|||||+|+|+|.+..+....+.|........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999987654443333221111100
Q ss_pred ---------------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchH-HHHHHHhcc
Q 018949 158 ---------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI-DEILEEGVG 221 (348)
Q Consensus 158 ---------------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~-~~~~~~~~~ 221 (348)
.......+.|+||||+....... . ..+.+++..+|+++||+++.+..... ...+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~--~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~ 155 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH--T---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD 155 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT--S---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh--H---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence 00112248999999985422111 1 34556679999999999998876433 444554555
Q ss_pred cccCCCCEEEEEecc
Q 018949 222 DHKDKLPILLVLNKK 236 (348)
Q Consensus 222 ~~~~~~p~ivv~NK~ 236 (348)
. ....+++|+||+
T Consensus 156 ~--~~~~~i~V~nk~ 168 (168)
T PF00350_consen 156 P--DKSRTIFVLNKA 168 (168)
T ss_dssp T--TCSSEEEEEE-G
T ss_pred C--CCCeEEEEEcCC
Confidence 4 455699999995
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-13 Score=113.24 Aligned_cols=158 Identities=17% Similarity=0.202 Sum_probs=102.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+++|+|..+|||||+|.+++..-+.... .+.++....-...+..++....+|||+| ++.++.+ +..|
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtag--qeEfDaI-------tkAy 89 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAG--QEEFDAI-------TKAY 89 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhcc--chhHHHH-------HHHH
Confidence 4458999999999999999999854332100 0111110000112345567788999999 5555544 4466
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH-HHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.|.+.++|+..++.. +....|..+...+ ..++|.++|-||+|+.....+..- .+-+.+... ...+.+|++...
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-~RlyRtSvked~ 167 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-KRLYRTSVKEDF 167 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-hhhhhhhhhhhh
Confidence 89999999999987644 3333444333333 267999999999999865543211 111111221 256889999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+..+|.++.+.+
T Consensus 168 NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 168 NVMHVFAYLAEKL 180 (246)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999988755
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-12 Score=111.98 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=98.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh--hhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH--MLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|+||||++|.|+|....... .....|..........++..+.++||||+.+.... .....+.+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 7999999999999999999998865332 23344555555555778899999999999664321 12222333333445
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhccc-cc--CCCCEEEEEeccCCCChhhHHHHH---------HHHHhcCCCCeEE
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGD-HK--DKLPILLVLNKKDLIKPGEIAKKL---------EWYEKFTDVDEVI 261 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~-~~--~~~p~ivv~NK~Dl~~~~~~~~~~---------~~~~~~~~~~~i~ 261 (348)
...+++++|+... ..+..+....+.+.. ++ .-..++||+|..|......+.+.+ ..+....+ .++
T Consensus 82 ~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--R~~ 158 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--RYH 158 (212)
T ss_dssp T-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--CEE
T ss_pred CCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--EEE
Confidence 6789999999987 454444443333322 22 224688999998877654433222 22233333 345
Q ss_pred EecCC------CCCCHHHHHHHHHHhCCCC
Q 018949 262 PVSAK------YGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 262 ~vSA~------~g~gi~eL~~~i~~~l~~~ 285 (348)
.++.+ ....+.+|++.|-+++...
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 55444 2356788888888877543
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-12 Score=113.76 Aligned_cols=149 Identities=21% Similarity=0.187 Sum_probs=101.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee----------e----------------------cCCCCceEEeEEEEEeCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI----------V----------------------TNKPQTTRHRILGICSGPE 162 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~----------~----------------------~~~~~~t~~~~~~~~~~~~ 162 (348)
..+++.+|...-||||||-+|+.....+ . ....|.|.+.....+..+.
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 3489999999999999999998654432 0 1122456666666677778
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
.+|.+.||||+.+.. +.+.--...||++|++||+..+..++.+...-....+ .-..+++++||+||.+-+
T Consensus 86 RkFIiADTPGHeQYT---------RNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 86 RKFIIADTPGHEQYT---------RNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred ceEEEecCCcHHHHh---------hhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-CCcEEEEEEeeecccccC
Confidence 899999999965532 2333345789999999999988866655443333332 235688999999998632
Q ss_pred --hHHHHH---HHHHhcCCC--CeEEEecCCCCCCHHH
Q 018949 243 --EIAKKL---EWYEKFTDV--DEVIPVSAKYGHGVED 273 (348)
Q Consensus 243 --~~~~~~---~~~~~~~~~--~~i~~vSA~~g~gi~e 273 (348)
..+.+. ..+...++. ..++|+||..|+|+-.
T Consensus 156 e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 156 EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 222222 233333333 3689999999998853
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=110.65 Aligned_cols=186 Identities=18% Similarity=0.257 Sum_probs=110.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCC--CceEEeEEE-----------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP--QTTRHRILG----------------------------- 156 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~--~~t~~~~~~----------------------------- 156 (348)
+..+|+|.|.||+|||||+.+|. |.++...+..| +.|.-.+.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 45589999999999999999985 33343322222 222111100
Q ss_pred --------EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchH--HHHHHHhcccccCC
Q 018949 157 --------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDK 226 (348)
Q Consensus 157 --------~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~--~~~~~~~~~~~~~~ 226 (348)
.++..++.+.++.|.|.+|..-. -..-+|.+++|.-...+..-+ ..-++ .
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~------------I~~~aDt~~~v~~pg~GD~~Q~iK~Gim--------E 189 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD------------IANMADTFLVVMIPGAGDDLQGIKAGIM--------E 189 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhH------------HhhhcceEEEEecCCCCcHHHHHHhhhh--------h
Confidence 02334578999999998774311 135788888887665444322 22222 2
Q ss_pred CCEEEEEeccCCCChhhH----HHHHHHHH----hcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCc
Q 018949 227 LPILLVLNKKDLIKPGEI----AKKLEWYE----KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHP 298 (348)
Q Consensus 227 ~p~ivv~NK~Dl~~~~~~----~~~~~~~~----~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~ 298 (348)
+--|+|+||.|....... ...+.... ...-..|++.+||.+|+|+++|++.|.+...........+......
T Consensus 190 iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~~~~rr~q 269 (323)
T COG1703 190 IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLFTEKRRTQ 269 (323)
T ss_pred hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhccccccchHHH
Confidence 334899999997654322 11222211 1222358999999999999999999987654322111111223334
Q ss_pred hHHHHHHHHHHHHHhhccCCC
Q 018949 299 ERFFVGEIIREKIFMQYRNEV 319 (348)
Q Consensus 299 ~~~~~~e~ire~~~~~~~~ei 319 (348)
.+.|+..++++.+...+....
T Consensus 270 ~~~~~~~~v~~~v~~~~~~~~ 290 (323)
T COG1703 270 YVEWIRTLVRDEVLDRLEANP 290 (323)
T ss_pred HHHHHHHHHHHHHHHHHHcch
Confidence 455667777777777666554
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-12 Score=109.00 Aligned_cols=119 Identities=27% Similarity=0.359 Sum_probs=66.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...|.|+|++|+|||+|...|...+... +. |......... ...+..+.++|+||+.. ++..+.... .+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~-T~---tS~e~n~~~~~~~~~~~~~~lvD~PGH~r-----lr~~~~~~~-~~ 72 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP-TV---TSMENNIAYNVNNSKGKKLRLVDIPGHPR-----LRSKLLDEL-KY 72 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS----B------SSEEEECCGSSTCGTCECEEEETT-HC-----CCHHHHHHH-HH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC-ee---ccccCCceEEeecCCCCEEEEEECCCcHH-----HHHHHHHhh-hc
Confidence 4479999999999999999999874321 11 1111111111 12456799999999532 222232221 24
Q ss_pred ccCccEEEEEecCCCCC---chHHHHHHHhccc---ccCCCCEEEEEeccCCCChhh
Q 018949 193 GINADCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~---~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
...+.+||||+|++... ....+.+...+.. .....|++|++||.|+.....
T Consensus 73 ~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 73 LSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp HGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred hhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 67899999999997422 2222233332221 126789999999999986543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.8e-12 Score=100.67 Aligned_cols=170 Identities=21% Similarity=0.272 Sum_probs=112.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.-..+|+++|.+..|||||+-.+.+..... .....|..-......+......+.+||..| +..+ .....-
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG--~~~~-------~n~lPi 88 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGG--QREF-------INMLPI 88 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCC--cHhh-------hccCce
Confidence 355699999999999999999999876531 111222211111222334456799999999 4322 233444
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCC---Chhh---HHHHHHHHHhcCCCCeEEEe
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLI---KPGE---IAKKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~---~~~~---~~~~~~~~~~~~~~~~i~~v 263 (348)
+..++-+++|++|.++.. ....+|+.+........+| |+|++|.|+. +++. +..+...+.+... .+.++|
T Consensus 89 ac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F~ 166 (205)
T KOG1673|consen 89 ACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFFC 166 (205)
T ss_pred eecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEEe
Confidence 567889999999998765 4455555554444334456 6789999974 2222 2223333444444 378999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCCCCCCCcc
Q 018949 264 SAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~~~~~~~~~~ 293 (348)
|+....|++.+|+.+...+...+|..|+..
T Consensus 167 Sts~sINv~KIFK~vlAklFnL~~ti~~~~ 196 (205)
T KOG1673|consen 167 STSHSINVQKIFKIVLAKLFNLPWTIPEIL 196 (205)
T ss_pred eccccccHHHHHHHHHHHHhCCceeccccc
Confidence 999999999999999999999888776553
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-12 Score=110.06 Aligned_cols=158 Identities=23% Similarity=0.315 Sum_probs=112.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.|+||||||+..+.+.+-. ...+..||...+.+++.+++..++++|.||+++.....-.+ .+++....+.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGR--GRQviavArt 139 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGR--GRQVIAVART 139 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCC--CceEEEEeec
Confidence 38999999999999999999987654 46788999999999999999999999999998754322111 1334455688
Q ss_pred ccEEEEEecCCCCCch---HHH----------------------------------------HHHHh-------------
Q 018949 196 ADCIVVLVDACKAPER---IDE----------------------------------------ILEEG------------- 219 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~---~~~----------------------------------------~~~~~------------- 219 (348)
||++++|+|++.+... ... .+...
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 9999999999865311 011 00001
Q ss_pred ------------cccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 220 ------------VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 220 ------------~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+.....-++++-|.||+|...-+++.... +. +..+.+|+...-|++.|++.|.+.+.
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlA----r~---PnsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLA----RQ---PNSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHh----cC---CCcEEEEeccccCHHHHHHHHHHHhc
Confidence 10111225678889999988766554432 22 24578899999999999999998763
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=104.07 Aligned_cols=116 Identities=25% Similarity=0.326 Sum_probs=76.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
..|.++|..++|||+|.-.|..... ....+......+.+..+.....++|.||+.. ++..+.+... .-..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~----~~TvtSiepn~a~~r~gs~~~~LVD~PGH~r-----lR~kl~e~~~-~~~~ 108 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH----RGTVTSIEPNEATYRLGSENVTLVDLPGHSR-----LRRKLLEYLK-HNYS 108 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc----cCeeeeeccceeeEeecCcceEEEeCCCcHH-----HHHHHHHHcc-cccc
Confidence 4799999999999999999887632 2333444555566666666689999999532 2222222221 1137
Q ss_pred ccEEEEEecCCCCC---chHHHHHHHhcccc---cCCCCEEEEEeccCCCCh
Q 018949 196 ADCIVVLVDACKAP---ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 196 ad~iv~VvD~~~~~---~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~ 241 (348)
+-++|||||+..-. ....+.+...+-.. ....|+++++||.|+..+
T Consensus 109 akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 109 AKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred ceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 89999999997543 33333444433221 367899999999999754
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=108.19 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
||+++|+.++||||..+.+.++-.+..+...+.|.......+. .....+.+||+||....- .. .+.......++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~-~~---~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFM-EN---YFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTT-HT---THTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccc-cc---cccccHHHHHhc
Confidence 6999999999999999999987644334444555554444443 556799999999953211 11 111112233689
Q ss_pred ccEEEEEecCCC-CCchHHHHHHH---hcccccCCCCEEEEEeccCCCChhhHHHHH--------HHHHhcC-CCCeEEE
Q 018949 196 ADCIVVLVDACK-APERIDEILEE---GVGDHKDKLPILLVLNKKDLIKPGEIAKKL--------EWYEKFT-DVDEVIP 262 (348)
Q Consensus 196 ad~iv~VvD~~~-~~~~~~~~~~~---~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~--------~~~~~~~-~~~~i~~ 262 (348)
+.++|||+|+.. ........+.. .+....++..+.+.+.|+|+.......+.. ..+.... ....++.
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 999999999983 33332222222 222334889999999999998765433222 2222222 1246788
Q ss_pred ecCCCCCCHHHHHHHHHHhCC
Q 018949 263 VSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+|... +.+.+-+..|+..+-
T Consensus 157 TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTS
T ss_pred ccCcC-cHHHHHHHHHHHHHc
Confidence 88887 478888888777654
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.2e-12 Score=103.47 Aligned_cols=154 Identities=22% Similarity=0.201 Sum_probs=100.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+++++|--|+|||||++.|-..+...-.++ .++....+...+..++.+|..|+.+. .+.+..++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPT----lHPTSE~l~Ig~m~ftt~DLGGH~qA---------rr~wkdyf 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPT----LHPTSEELSIGGMTFTTFDLGGHLQA---------RRVWKDYF 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCC----cCCChHHheecCceEEEEccccHHHH---------HHHHHHHH
Confidence 566999999999999999999988776533333 33333345667788999999996442 24466778
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHH---HHHHHHhc------------C
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK---KLEWYEKF------------T 255 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~---~~~~~~~~------------~ 255 (348)
..+|.+|+++|+.+.. .+....+...+... -.+.|+++.+||+|.+.+...++ ........ .
T Consensus 86 ~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred hhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCC
Confidence 9999999999997643 22222222111111 16799999999999986542221 11111111 1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHH
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~ 280 (348)
....++.||...+.|.-+-+.|+..
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhh
Confidence 1124688888888887766666544
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-12 Score=130.75 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=79.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCcee---------eecCC------CCceEEeE----EEEEeCCCeeEEEEeCCCCch
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLS---------IVTNK------PQTTRHRI----LGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~---------~~~~~------~~~t~~~~----~~~~~~~~~~~~l~DtpG~~~ 175 (348)
..+|+++|+.++|||||+++|+..... ...+. .+.|.... ...+.+.+..+++|||||+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 448999999999999999999742110 00111 12232221 112456778999999999754
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.. ..+..++..+|++|+|+|+..+.......++..... .+.|.++|+||+|...
T Consensus 99 f~---------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 99 FG---------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred cH---------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--cCCCEEEEEEChhccc
Confidence 21 234566789999999999998876666666655544 5788999999999864
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=112.40 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=65.5
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.++.+.++||||..+... .....+|.++++.+...+ .+... +...+ .++|.++|+||+|+..
T Consensus 125 ~g~D~viidT~G~~~~e~------------~i~~~aD~i~vv~~~~~~-~el~~-~~~~l----~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSEV------------DIANMADTFVVVTIPGTG-DDLQG-IKAGL----MEIADIYVVNKADGEG 186 (300)
T ss_pred CCCCEEEEeCCCCchhhh------------HHHHhhceEEEEecCCcc-HHHHH-HHHHH----hhhccEEEEEcccccc
Confidence 367899999999764321 124578888888654322 12111 11111 4578899999999986
Q ss_pred hhhHHHHH-------HHHHhc-CCC-CeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 241 PGEIAKKL-------EWYEKF-TDV-DEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 241 ~~~~~~~~-------~~~~~~-~~~-~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
........ ..+... ... .+++++||++|.|+++|+++|.+..
T Consensus 187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 54321111 111111 111 3689999999999999999998864
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=107.69 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=82.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE-------------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG------------------------------------- 156 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------- 156 (348)
..+.|+++|+.|+||||+++++.|..+..... ...|+.+...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 44589999999999999999999875321111 0111111000
Q ss_pred ---------------EEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhcc-CccEEEEEecCCCCCchHH-HH
Q 018949 157 ---------------ICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGI-NADCIVVLVDACKAPERID-EI 215 (348)
Q Consensus 157 ---------------~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~-~ad~iv~VvD~~~~~~~~~-~~ 215 (348)
+.......+.++||||+.... ...+...+.+.+..|++ ..+++++|+|++.+....+ ..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 001112469999999996421 12344455566777888 4569999999987765544 45
Q ss_pred HHHhcccccCCCCEEEEEeccCCCCh
Q 018949 216 LEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 216 ~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+.+.+.. .+.|+++|+||+|..+.
T Consensus 184 ia~~ld~--~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVDP--QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHH--cCCcEEEEEECCCCCCc
Confidence 6666655 67899999999999864
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=110.18 Aligned_cols=115 Identities=26% Similarity=0.269 Sum_probs=56.9
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhcc--CccEEEEEecCCCCCch---HHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~--~ad~iv~VvD~~~~~~~---~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
.+.++||||..+ .-..+..+ ....+.+. ..-++|+++|+...... ....+....-....+.|.|.|+||+|+
T Consensus 92 ~y~l~DtPGQiE--lf~~~~~~-~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIE--LFTHSDSG-RKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHH--HHHHSHHH-HHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEE--EEEechhH-HHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc
Confidence 599999999544 22222222 12222233 35589999999744322 122222222122257999999999999
Q ss_pred CChh--hH------------------HHHHHHHHh---cCCCC-eEEEecCCCCCCHHHHHHHHHHh
Q 018949 239 IKPG--EI------------------AKKLEWYEK---FTDVD-EVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 239 ~~~~--~~------------------~~~~~~~~~---~~~~~-~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
.+.. .. ......+.. ..+.. +++++|+.+++|+.+|+..|-+.
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 8732 00 001111111 12333 78999999999999999988764
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-11 Score=107.34 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=86.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC-----ceeeecCCCCceEEe---------EEEE-------------------EeC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHR---------ILGI-------------------CSG 160 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~-----~~~~~~~~~~~t~~~---------~~~~-------------------~~~ 160 (348)
..+.|+++|++|+|||||+++++.. +.......++...+. .... ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4558999999999999999998743 112222222111100 0000 000
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.+..+.+++|.|....+. .+....+..+.|+|+.+....... .... ...|.++++||+|+.+
T Consensus 101 ~~~d~IiIEt~G~l~~~~------------~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~--~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA------------DFDLGEHMRVVLLSVTEGDDKPLK----YPGM--FKEADLIVINKADLAE 162 (207)
T ss_pred CCCCEEEEecCCCcCCCc------------ccccccCeEEEEEecCcccchhhh----hHhH--HhhCCEEEEEHHHccc
Confidence 123566777777211110 001123444567777654322111 1111 3467899999999975
Q ss_pred h--hhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 241 P--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 241 ~--~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
. .........++......+++++||++|.|++++++++.+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3 22344444555555557899999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=114.09 Aligned_cols=86 Identities=24% Similarity=0.317 Sum_probs=68.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC------------------CeeEEEEeCCCCchhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKK 177 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~l~DtpG~~~~~ 177 (348)
.+++|||-||||||||.|+++... ....++|.+|.++..+++... ...+.++|.+|++...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 479999999999999999999988 447899999999888774321 1358999999998654
Q ss_pred h--hhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 178 I--HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 178 ~--~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
. ..+.. .++..++.+|++++|||+.
T Consensus 82 s~GeGLGN----kFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGN----KFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcch----HHHHhhhhcCeEEEEEEec
Confidence 2 33444 4455679999999999986
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-11 Score=122.44 Aligned_cols=118 Identities=23% Similarity=0.243 Sum_probs=90.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----ec------------CCCCceEEeEEEEEeCCC-eeEEEEeCCCCch
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPE-YQMILYDTPGIIE 175 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~ 175 (348)
+..+|+|+|+.++|||||..+|+.....+ +. ...+.|.......+.+++ +.++++||||+++
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 44489999999999999999987432211 11 111334444444556664 9999999999887
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
.. ..+.+.++-+|++|+|+|+..+.+.+.+.+++++.. .++|.++++||+|....+
T Consensus 89 Ft---------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 89 FT---------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--YGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cH---------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--cCCCeEEEEECccccccC
Confidence 54 345566789999999999999999999999888887 889999999999998654
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=103.71 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=108.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+++++|..|.||||++++.+...+... .++.+...+.....-+.+..++..|||.| ++.+..++.. ++-
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtag--qEk~gglrdg-------yyI 81 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAG--QEKKGGLRDG-------YYI 81 (216)
T ss_pred EEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccc--ceeecccccc-------cEE
Confidence 3799999999999999999988777632 22223333333333333458899999999 5554444332 245
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
...++++++|.+... .....|...+.+.. .++|+++++||.|...+..-...+. +. ......++++||+++.|.+
T Consensus 82 ~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~~k~k~v~-~~-rkknl~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 82 QGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARKVKAKPVS-FH-RKKNLQYYEISAKSNYNFE 158 (216)
T ss_pred ecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccccccccce-ee-ecccceeEEeecccccccc
Confidence 667888888887654 44455555555543 6799999999999876541111111 11 1123478999999999999
Q ss_pred HHHHHHHHhCCCCCC
Q 018949 273 DIRDWILTKLPLGPA 287 (348)
Q Consensus 273 eL~~~i~~~l~~~~~ 287 (348)
.-|.++.+.+.+.|.
T Consensus 159 kPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 159 RPFLWLARKLTGDPS 173 (216)
T ss_pred cchHHHhhhhcCCCC
Confidence 999999999876554
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=112.54 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=101.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc------------------------eeeec------CCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK------------------------LSIVT------NKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~------------------------~~~~~------~~~~~t~~~~~~~~~~~~~ 163 (348)
.....+++|+.++|||||+..++..= ++++- ...|.|.+.....+.....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 34479999999999999999986210 11111 2224455555566677778
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-------chHHHHHHHhcccccCCCCEEEEEecc
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLNKK 236 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p~ivv~NK~ 236 (348)
.++|+|+||+.+.. ..+......+|++++|+|++.+. ..+......+++.++ -..+||++||+
T Consensus 256 ~~tliDaPGhkdFi---------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKm 325 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFI---------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKM 325 (603)
T ss_pred eEEEecCCCccccc---------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecc
Confidence 89999999965432 33445567999999999998643 334556666666642 35689999999
Q ss_pred CCCC--hhhHHHHHHHHHhcC----CC----CeEEEecCCCCCCHHHH
Q 018949 237 DLIK--PGEIAKKLEWYEKFT----DV----DEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 237 Dl~~--~~~~~~~~~~~~~~~----~~----~~i~~vSA~~g~gi~eL 274 (348)
|+++ .+..+++...+..++ ++ ..++|||+.+|+|+-..
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 9985 333344333333222 22 36899999999998653
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-10 Score=113.59 Aligned_cols=126 Identities=18% Similarity=0.093 Sum_probs=79.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh-hhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~l~~~~~~~~~~ 191 (348)
...+|+++|.+|+||||++|+|+|.+...+.. .++||.. ........+..+.++||||+.+.... .........+..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 34589999999999999999999987654444 3566654 33333345788999999999764222 122333344444
Q ss_pred hcc--CccEEEEEecCCCCCc-hHHHHHHHhccc-cc--CCCCEEEEEeccCCCC
Q 018949 192 AGI--NADCIVVLVDACKAPE-RIDEILEEGVGD-HK--DKLPILLVLNKKDLIK 240 (348)
Q Consensus 192 ~~~--~ad~iv~VvD~~~~~~-~~~~~~~~~~~~-~~--~~~p~ivv~NK~Dl~~ 240 (348)
++. .+|++|||...+.... ..+..+.+.+.. ++ --..+|||+|..|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 443 5899999987643222 122222222222 22 2356899999999875
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.6e-11 Score=105.54 Aligned_cols=167 Identities=22% Similarity=0.111 Sum_probs=109.4
Q ss_pred CCCCCCccEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCch-----hhhhhh
Q 018949 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIE-----KKIHML 181 (348)
Q Consensus 109 ~~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~-----~~~~~l 181 (348)
+.|..+.++++++|.+|||||||+|.++..+... ...+++.|+......+ +..+.++|.||+.. +.....
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchH
Confidence 4555677899999999999999999998766432 2336666666544333 35699999999533 222222
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh------HHHHHHHHHhc-
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------IAKKLEWYEKF- 254 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------~~~~~~~~~~~- 254 (348)
...- ..+...-+.--.+++++|++.+.+..+....+++.+ .++|+.+|+||||....-. .......+...
T Consensus 207 ~~~t-~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 207 DKFT-KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred hHhH-HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 2211 111111234445778899998888888888888888 8999999999999864221 01111111111
Q ss_pred ----CCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 255 ----TDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 255 ----~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
....|++.+|+.++.|++.|+-.|...
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhh
Confidence 122367789999999999998777654
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=107.55 Aligned_cols=160 Identities=20% Similarity=0.144 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc----eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.+|+|+|.+|+|||||||+|.|-. .+..+....||....... ..+-..+.+||.||.+...+ .....+ +.+
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f-~~~~Yl-~~~-- 110 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFPNVTLWDLPGIGTPNF-PPEEYL-KEV-- 110 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS---HHHHH-HHT--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCC-CHHHHH-HHc--
Confidence 379999999999999999998722 111111112333322222 22334599999999754332 222222 221
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC------------Chhh-HHHH----HHHHHhc
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGE-IAKK----LEWYEKF 254 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~------------~~~~-~~~~----~~~~~~~ 254 (348)
.+...|.+|++.+. .....+.++...++. .++|+++|-||+|.. +... ++++ ...+...
T Consensus 111 ~~~~yD~fiii~s~--rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 111 KFYRYDFFIIISSE--RFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp TGGG-SEEEEEESS--S--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccccCEEEEEeCC--CCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 36788987776654 455666677777777 789999999999961 0111 1111 2222222
Q ss_pred C-CCCeEEEecCCCC--CCHHHHHHHHHHhCCC
Q 018949 255 T-DVDEVIPVSAKYG--HGVEDIRDWILTKLPL 284 (348)
Q Consensus 255 ~-~~~~i~~vSA~~g--~gi~eL~~~i~~~l~~ 284 (348)
. ...++|.+|...- .....|.+.+.+.++.
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 2 3347899998764 5688899999988865
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=101.08 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC-------ce--------eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ-------KL--------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~-------~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+|+.+|+.+.|||||..++... .. ++.....+.|.......+......+-.+||||+.+
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD----- 87 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 87 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-----
Confidence 48999999999999999997531 10 11122235666666666777788899999999644
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHHH----HHHHHhcC
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKK----LEWYEKFT 255 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~----~~~~~~~~ 255 (348)
+.+.+.-...+.|..|+|+.+++++..+.....-+.+. -+.| +++++||+|+.+..++.+. ...+-..+
T Consensus 88 ----YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq--vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 88 ----YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred ----HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh--cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 22333344568899999999999987776666655555 6776 5678999999985544222 12222222
Q ss_pred ----CCCeEEEecCCCC--------CCHHHHHHHHHHhCCC
Q 018949 256 ----DVDEVIPVSAKYG--------HGVEDIRDWILTKLPL 284 (348)
Q Consensus 256 ----~~~~i~~vSA~~g--------~gi~eL~~~i~~~l~~ 284 (348)
...|++.-||... ..+.+|++++-+.++.
T Consensus 162 ~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 162 GFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred CCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 3347777777653 2367888888887764
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7e-10 Score=94.23 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=56.1
Q ss_pred EEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh--hhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 198 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 198 ~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
.-|+|+|.+.+...-.+ ....+ -..-++|+||.|+.+. .+++.+....++..+..|++++|+++|+|+++++
T Consensus 120 ~~v~VidvteGe~~P~K-~gP~i-----~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~ 193 (202)
T COG0378 120 LRVVVIDVTEGEDIPRK-GGPGI-----FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWL 193 (202)
T ss_pred eEEEEEECCCCCCCccc-CCCce-----eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHH
Confidence 66778887766533111 00000 0134899999999864 3457777788888888899999999999999999
Q ss_pred HHHHHhC
Q 018949 276 DWILTKL 282 (348)
Q Consensus 276 ~~i~~~l 282 (348)
+++....
T Consensus 194 ~~i~~~~ 200 (202)
T COG0378 194 RFIEPQA 200 (202)
T ss_pred HHHHhhc
Confidence 9987643
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=99.96 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=56.5
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh--hhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
+|.+|.|+|+.+....... .... -...-++++||+|+.+. .++....+.++...+..+++++||++|+|+++
T Consensus 113 ~~~~i~vvD~~~~~~~~~~-~~~q-----i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK-GGPG-----ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred hCcEEEEEEcchhhhhhhh-hHhH-----hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 5779999999865542211 1111 11223899999999852 34444555566555667899999999999999
Q ss_pred HHHHHHHhC
Q 018949 274 IRDWILTKL 282 (348)
Q Consensus 274 L~~~i~~~l 282 (348)
++++|.+.+
T Consensus 187 l~~~i~~~~ 195 (199)
T TIGR00101 187 VIDWIEHYA 195 (199)
T ss_pred HHHHHHhhc
Confidence 999998765
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-10 Score=102.13 Aligned_cols=134 Identities=13% Similarity=0.207 Sum_probs=77.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecC--------CCCc-eEEeEEEEEeCC--CeeEEEEeCCCCchhh-----hhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQT-TRHRILGICSGP--EYQMILYDTPGIIEKK-----IHM 180 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~--------~~~~-t~~~~~~~~~~~--~~~~~l~DtpG~~~~~-----~~~ 180 (348)
+|+++|.+|+|||||+|.|++........ ...+ +.......+..+ ...+.++||||+++.- +..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~ 85 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEP 85 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHH
Confidence 79999999999999999999876543320 1111 111112222222 3578999999987521 112
Q ss_pred hHHHHHHHHHhhc-------------cCccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH
Q 018949 181 LDSMMMKNVRSAG-------------INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (348)
Q Consensus 181 l~~~~~~~~~~~~-------------~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 246 (348)
+..........++ .+.|+|+|+++++. +....+...++.+. ..+++|-|+.|+|.....++..
T Consensus 86 I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls---~~vNvIPvIaKaD~lt~~el~~ 162 (281)
T PF00735_consen 86 IVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS---KRVNVIPVIAKADTLTPEELQA 162 (281)
T ss_dssp HHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT---TTSEEEEEESTGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc---ccccEEeEEecccccCHHHHHH
Confidence 2222211111111 35699999999864 55666665555554 4689999999999999888766
Q ss_pred HHHHHHh
Q 018949 247 KLEWYEK 253 (348)
Q Consensus 247 ~~~~~~~ 253 (348)
....+..
T Consensus 163 ~k~~i~~ 169 (281)
T PF00735_consen 163 FKQRIRE 169 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=102.35 Aligned_cols=157 Identities=25% Similarity=0.303 Sum_probs=112.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.|++||||++..+.|..- .+..+.++|-..+.+...+++..+.+.|.||+.+...+.-.+ ..++....+.|
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgr--g~qviavartc 137 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGR--GKQVIAVARTC 137 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCC--ccEEEEEeecc
Confidence 899999999999999999998654 367888999999999999999999999999998754332211 12333446789
Q ss_pred cEEEEEecCCCCCchH--H----------------------------------------HHHHHh---------------
Q 018949 197 DCIVVLVDACKAPERI--D----------------------------------------EILEEG--------------- 219 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~--~----------------------------------------~~~~~~--------------- 219 (348)
.++++|+|+..+...- . ..+...
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 9999999987553110 0 000000
Q ss_pred -------cccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 220 -------VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 220 -------~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+.....-+|.+.++||+|...-++++- .......+++||.++.|+++|++.+.+.+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi-------i~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI-------IYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccce-------eeeccceeecccccccchHHHHHHHhhcch
Confidence 000012468899999999876554322 122346799999999999999999998764
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-10 Score=105.66 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=46.3
Q ss_pred CCEEEEEeccCCCC--hhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 227 LPILLVLNKKDLIK--PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 227 ~p~ivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
.+-++|+||+|+.+ ..+++.....++...+..+++++||++|+|+++|.++|.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56699999999986 34566777777777777899999999999999999999864
|
|
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-11 Score=102.02 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=109.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC---eeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
++.|+|+.++|||+++.+.+...+.. .-......+....++.++. +++.|||..| ++.+..+ ..-++
T Consensus 27 k~lVig~~~vgkts~i~ryv~~nfs~-~yRAtIgvdfalkVl~wdd~t~vRlqLwdIag--Qerfg~m-------trVyy 96 (229)
T KOG4423|consen 27 KVLVIGDLGVGKTSSIKRYVHQNFSY-HYRATIGVDFALKVLQWDDKTIVRLQLWDIAG--QERFGNM-------TRVYY 96 (229)
T ss_pred hhheeeeccccchhHHHHHHHHHHHH-HHHHHHhHHHHHHHhccChHHHHHHHHhcchh--hhhhcce-------EEEEe
Confidence 79999999999999999988665532 1111111122222333332 4688999999 5554443 44568
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhhH--HHHHHHHHhcCCCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA 265 (348)
+.+.+.++|+|.+++. +....|...+.... +...|+++..||||....... ......+.+..++..++++|+
T Consensus 97 kea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~ 176 (229)
T KOG4423|consen 97 KEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSA 176 (229)
T ss_pred cCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecc
Confidence 9999999999998765 33344444433321 355788999999998754333 356677778888889999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
+.+.|++|.-..+++++.
T Consensus 177 Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 177 KENKNIPEAQRELVEKIL 194 (229)
T ss_pred ccccChhHHHHHHHHHHH
Confidence 999999999888887664
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.7e-10 Score=93.86 Aligned_cols=56 Identities=30% Similarity=0.416 Sum_probs=46.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
..+|+++|.||||||||+|+|.+.+...++..+++|+........ ..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLM---KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcC---CCEEEEECcCC
Confidence 447999999999999999999999988899999999886543322 34899999994
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.6e-10 Score=107.92 Aligned_cols=117 Identities=22% Similarity=0.262 Sum_probs=88.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----e------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----~------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+...|+|.-+-.+||||+-++++.....+ + ....+.|....-..+.+...+++++||||+++.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 33479999999999999999987432111 1 111233444444446677899999999998876
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
.+. +.++++-.|++|+|+|+..+.+.+...++++.+. .++|.|..+||+|.+..
T Consensus 118 T~E---------VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TFE---------VERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--YNVPRICFINKMDRMGA 171 (721)
T ss_pred EEE---------ehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--cCCCeEEEEehhhhcCC
Confidence 544 3344778899999999999999998888888877 89999999999998654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-10 Score=95.27 Aligned_cols=56 Identities=36% Similarity=0.421 Sum_probs=48.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
..+|+++|.||+|||||+|++.+.+...+++.|++|+......+. ..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 358999999999999999999999988899999999987665543 35899999994
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=99.04 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=101.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee--------e-----cCCCCceEEeEEEE-----------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--------V-----TNKPQTTRHRILGI----------------------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~--------~-----~~~~~~t~~~~~~~----------------------- 157 (348)
....|+.+|+.++|||||+-+|...+..- . ....+.|......+
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 44589999999999999999886432210 0 00011111111111
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 158 ~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
+...+.-+.++||.|+...-...++..+ -...|..++++-+.++.+...+..+...-. ...|+|+|+||+|
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~-------gqk~dYglLvVaAddG~~~~tkEHLgi~~a--~~lPviVvvTK~D 266 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLL-------GQKVDYGLLVVAADDGVTKMTKEHLGIALA--MELPVIVVVTKID 266 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHh-------ccccceEEEEEEccCCcchhhhHhhhhhhh--hcCCEEEEEEecc
Confidence 1111234889999995321111121111 357899999999999998888877776666 7899999999999
Q ss_pred CCChhhHHHHHHHHHh---------------------------cCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 238 LIKPGEIAKKLEWYEK---------------------------FTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~---------------------------~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
+.+.+.+....+.+.. ..+..|+|.+|+.+|+|++-|.+.+..+
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 9876544333322221 1124589999999999998776665543
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-09 Score=97.52 Aligned_cols=131 Identities=21% Similarity=0.302 Sum_probs=85.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--------------------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-------------------------------- 162 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-------------------------------- 162 (348)
.+.|.++|+-+.||||+|+.|+...+......|..|.+....++.++.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 347999999999999999999988765322222222222222211110
Q ss_pred ---------eeEEEEeCCCCchhhhhhhHHH--HHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEE
Q 018949 163 ---------YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPIL 230 (348)
Q Consensus 163 ---------~~~~l~DtpG~~~~~~~~l~~~--~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~i 230 (348)
..+.++||||+.......+.+. +.........+||.|++++|+..-. ......+...++. ..-.+-
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG--~EdkiR 215 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG--HEDKIR 215 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC--CcceeE
Confidence 1489999999876433322221 3333444578999999999996533 4445556666665 566788
Q ss_pred EEEeccCCCChhhHHHH
Q 018949 231 LVLNKKDLIKPGEIAKK 247 (348)
Q Consensus 231 vv~NK~Dl~~~~~~~~~ 247 (348)
||+||.|.++..++-+.
T Consensus 216 VVLNKADqVdtqqLmRV 232 (532)
T KOG1954|consen 216 VVLNKADQVDTQQLMRV 232 (532)
T ss_pred EEeccccccCHHHHHHH
Confidence 99999999988776443
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.6e-09 Score=91.17 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=68.3
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+..+|++++|+|++.+.......+...+.....++|+++|+||+|+.+..........+...... .++++||+.+.
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~-~~~~iSa~~~~ 81 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPT-IAFHASINNPF 81 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcE-EEEEeeccccc
Confidence 45578999999999998876444455555554433458999999999998766555555555544332 36889999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++|++.+.+.+
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998764
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-09 Score=88.99 Aligned_cols=92 Identities=26% Similarity=0.186 Sum_probs=65.1
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
......++|++++|+|++++.......+...+.. .++|+++|+||+|+.+........ .+....+ .+++++||++|
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~~~-~~~~~iSa~~~ 81 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWK-SIKESEG-IPVVYVSAKER 81 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHH-HHHHhCC-CcEEEEEcccc
Confidence 3344567999999999987654444444444443 568999999999997644333222 2222222 47899999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++|++.+.+.++.
T Consensus 82 ~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 82 LGTKILRRTIKELAKI 97 (156)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999988764
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-09 Score=101.72 Aligned_cols=61 Identities=43% Similarity=0.600 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (348)
+..+|+++|.||||||||||+|.+.+.+.+++.||+|+..+...+... +.|+||||+....
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii~~~ 191 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGIIPPK 191 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcCCCC
Confidence 345899999999999999999999999889999999999887666544 8999999987543
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-09 Score=102.56 Aligned_cols=119 Identities=22% Similarity=0.309 Sum_probs=81.6
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeee---c----CCC---------CceEEe--EEEE---EeCCCeeEEEE
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV---T----NKP---------QTTRHR--ILGI---CSGPEYQMILY 168 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~---~----~~~---------~~t~~~--~~~~---~~~~~~~~~l~ 168 (348)
..+.+...|+++|+-.+|||+|+..|........ . .++ +.+... .... ...+.+-++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3444556899999999999999999986542110 0 000 111111 1111 22345678999
Q ss_pred eCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
||||+++. ..++...++.+|++++|+|+..+..-..+.+.+..-. .+.|+++|+||+|+.
T Consensus 203 DTPGHVnF---------~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNF---------SDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccc---------hHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--ccCcEEEEEehhHHH
Confidence 99997653 3445566789999999999999886666666665555 689999999999964
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-09 Score=87.23 Aligned_cols=55 Identities=35% Similarity=0.594 Sum_probs=46.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 174 (348)
+++++|.+|+|||||+|++++.....++..+++|++.....++. .+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence 79999999999999999999998877888899998876544432 58999999974
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.3e-09 Score=94.06 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=79.4
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
.+.++||||+ ..++..++....-.|++++++-+..+. +.+....+....-. .=+.++++-||+|+....
T Consensus 126 HVSfVDCPGH---------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDli~e~ 195 (466)
T KOG0466|consen 126 HVSFVDCPGH---------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLIKES 195 (466)
T ss_pred EEEeccCCch---------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhhhhHH
Confidence 4789999994 234555555556778899999887654 33333322222111 235789999999999877
Q ss_pred hHHHHHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCC
Q 018949 243 EIAKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 243 ~~~~~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (348)
+..+..+++..+. ...|++|+||.-+.|++-+.++|.+.++-.+.
T Consensus 196 ~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 196 QALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred HHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 6555555555433 33599999999999999999999999986544
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=101.30 Aligned_cols=113 Identities=23% Similarity=0.258 Sum_probs=81.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE-------E------E--EeCCCeeEEEEeCCCCchhhhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-------G------I--CSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~-------~------~--~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
...|+++.+...|||||...|+..+..+.+.-.|+-+..-. + . .-.+++.++++|+||+++..
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~-- 86 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS-- 86 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh--
Confidence 34799999999999999999987665544444444332110 0 1 12367889999999987744
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
..+..+..-||++++++|+..+.-.+...+.+.... .+...++|+||+|.
T Consensus 87 -------sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 -------SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--EGLKPILVINKIDR 136 (887)
T ss_pred -------hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--ccCceEEEEehhhh
Confidence 234455688999999999999987777776664444 56778999999994
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=88.56 Aligned_cols=96 Identities=24% Similarity=0.271 Sum_probs=65.0
Q ss_pred HHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHH------Hhc-CCC
Q 018949 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY------EKF-TDV 257 (348)
Q Consensus 185 ~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~------~~~-~~~ 257 (348)
+...+..+++.+|++++|+|+++........+.. .. .++|+++|+||+|+.+..........+ ... ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hc--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 3455667789999999999998765333333311 12 568999999999997543211111111 111 122
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.+++++||++|.|+++|++.|.+.++.
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~~ 126 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAKK 126 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 368999999999999999999998753
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.4e-08 Score=88.95 Aligned_cols=136 Identities=15% Similarity=0.192 Sum_probs=85.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeec----CC-----CCceEEeEEEEEeCCC--eeEEEEeCCCCchh-----hh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT----NK-----PQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KI 178 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~----~~-----~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~-----~~ 178 (348)
..+|+++|+.|.|||||+|.|++....... .. +..........+..++ ..++++||||+++. .+
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 348999999999999999999987432110 11 1111222223333333 56899999999873 22
Q ss_pred hhhHHHHHHHHHhhc--------------cCccEEEEEecCC-CCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh
Q 018949 179 HMLDSMMMKNVRSAG--------------INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~--------------~~ad~iv~VvD~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
..+-.....+...++ .+.++|+|.+-.+ ++....+-..+..+. ..+.+|=|+-|+|.....+
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls---~~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS---KRVNLIPVIAKADTLTDDE 179 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh---cccCeeeeeeccccCCHHH
Confidence 222222222222221 2579999999876 455666655554443 4688899999999999888
Q ss_pred HHHHHHHHHh
Q 018949 244 IAKKLEWYEK 253 (348)
Q Consensus 244 ~~~~~~~~~~ 253 (348)
+......+..
T Consensus 180 l~~~K~~I~~ 189 (373)
T COG5019 180 LAEFKERIRE 189 (373)
T ss_pred HHHHHHHHHH
Confidence 7666555544
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.1e-09 Score=98.27 Aligned_cols=90 Identities=21% Similarity=0.169 Sum_probs=69.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 178 (348)
.+++|+|.||+|||||.|++.+.....+..+|.||..+..+++...+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 37999999999999999999999873468889999988887766443 3589999999976432
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCC
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~ 207 (348)
.. ..+...++..++.+|++++|+|+..
T Consensus 83 ~g--~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KG--EGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cc--cCcchHHHHHHHhCCEEEEEEeCCC
Confidence 21 1122345566799999999999853
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.8e-08 Score=88.70 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=104.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC-------Ccee--------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG-------QKLS--------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~-------~~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
..+|+-+|+...|||||..++.. .++. +.....+.|.......+......+--+||||+.+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD---- 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD---- 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH----
Confidence 34899999999999999998752 1111 1122335566655555666667788999999644
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCC-CEEEEEeccCCCChhhHH--------HHHHH
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKPGEIA--------KKLEW 250 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~NK~Dl~~~~~~~--------~~~~~ 250 (348)
+.....--..+.|++|+||.++++...+.+..+-+.+. -++ .+++.+||.|+++..+.. +.+..
T Consensus 130 -----YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ--VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 130 -----YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ--VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred -----HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH--cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 23344444578899999999999998887777766666 344 467889999999554332 22222
Q ss_pred HHhcCCCCeEEEecCCC---CC-------CHHHHHHHHHHhCCC
Q 018949 251 YEKFTDVDEVIPVSAKY---GH-------GVEDIRDWILTKLPL 284 (348)
Q Consensus 251 ~~~~~~~~~i~~vSA~~---g~-------gi~eL~~~i~~~l~~ 284 (348)
+.-.....|++.-||+. |. .|.+|++.+-+.++.
T Consensus 203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 22233456888877654 31 256666666665653
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-08 Score=94.41 Aligned_cols=134 Identities=17% Similarity=0.171 Sum_probs=96.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+-..|+|+.+..+||||...+++.-...+ .....+.|....-..++++|.+++++||||+++.
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 44489999999999999999986322111 1222345566666678899999999999998775
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
... +.+.++-.|++|.|+|++.+.+.+.-.+++...+ .++|.+..+||+|..... .+.....+....+
T Consensus 116 ~le---------verclrvldgavav~dasagve~qtltvwrqadk--~~ip~~~finkmdk~~an-fe~avdsi~ekl~ 183 (753)
T KOG0464|consen 116 RLE---------VERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK--FKIPAHCFINKMDKLAAN-FENAVDSIEEKLG 183 (753)
T ss_pred EEE---------HHHHHHHhcCeEEEEeccCCcccceeeeehhccc--cCCchhhhhhhhhhhhhh-hhhHHHHHHHHhC
Confidence 422 3344667799999999999988777666666655 689999999999987543 3444455555555
Q ss_pred CCe
Q 018949 257 VDE 259 (348)
Q Consensus 257 ~~~ 259 (348)
..+
T Consensus 184 ak~ 186 (753)
T KOG0464|consen 184 AKA 186 (753)
T ss_pred Cce
Confidence 543
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-08 Score=86.12 Aligned_cols=57 Identities=40% Similarity=0.477 Sum_probs=48.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
+..+++++|.+|+|||||+|++++.....++..+++|+........ ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 4458999999999999999999998876678889999988765543 45899999995
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=93.50 Aligned_cols=60 Identities=38% Similarity=0.519 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+++|.||||||||+|+|.+.+...++..+++|+......+. ..+.++||||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS---DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC---CCEEEEECCCcccC
Confidence 3458999999999999999999999877789999999987654442 25899999998544
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=94.75 Aligned_cols=60 Identities=35% Similarity=0.512 Sum_probs=50.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+++|.||||||||+|+|.+.+...+++.|++|+......+. ..+.++||||+...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~~~ 179 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG---KGLELLDTPGILWP 179 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC---CcEEEEECCCcCCC
Confidence 3458999999999999999999999887789999999997654432 35899999998653
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.7e-09 Score=89.78 Aligned_cols=56 Identities=41% Similarity=0.472 Sum_probs=45.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCce--------eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKL--------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
..+++++|.+|||||||+|+|++... ..++..++||+......+.. .+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 35899999999999999999997542 34678889999987766543 4799999995
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=88.23 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=84.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee------cCCCCceEE--eEEEEEeCC--CeeEEEEeCCCCchh-----hhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV------TNKPQTTRH--RILGICSGP--EYQMILYDTPGIIEK-----KIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~------~~~~~~t~~--~~~~~~~~~--~~~~~l~DtpG~~~~-----~~~~ 180 (348)
..++++|..|.|||||+|.|++...... ...+..|.. .....+..+ ..+++++||||+++. .+..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 4899999999999999999987743311 111211222 222223333 356889999999773 2222
Q ss_pred hHHHHHHHHHhh-----------cc--CccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH
Q 018949 181 LDSMMMKNVRSA-----------GI--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (348)
Q Consensus 181 l~~~~~~~~~~~-----------~~--~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 246 (348)
+-...-.....| +. +.++|+|.+..+. +....+-.++..+. ..+++|-|+-|.|.....++..
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~El~~ 178 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDELNQ 178 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh---ccccccceeeccccCCHHHHHH
Confidence 222222222222 22 6799999999764 46776666555444 4688899999999999888766
Q ss_pred HHHHHHh
Q 018949 247 KLEWYEK 253 (348)
Q Consensus 247 ~~~~~~~ 253 (348)
....+..
T Consensus 179 ~K~~I~~ 185 (366)
T KOG2655|consen 179 FKKRIRQ 185 (366)
T ss_pred HHHHHHH
Confidence 6555444
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-08 Score=93.24 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee-------------ecCCCCceEEeEE---------EEEeCC------------
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-------------VTNKPQTTRHRIL---------GICSGP------------ 161 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~-------------~~~~~~~t~~~~~---------~~~~~~------------ 161 (348)
.+|+++|...+|||||+-.|....... -....+.|..... .++++.
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 389999999999999998886433210 0111122211111 111111
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
..-+.++|.+|+...-...+.. .- --..|.+++|+.+..+.....+..+.+... .++|++++++|+|+.++
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~g-----Lt--gY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A--L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHG-----LT--GYTPHFACLVVSADRGITWTTREHLGLIAA--LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred cceEEEeecccchhhheeeeee-----cc--cCCCceEEEEEEcCCCCccccHHHHHHHHH--hCCCeEEEEEeeccccc
Confidence 1348999999953211111100 00 124688999999999887777777777777 78999999999999887
Q ss_pred hhHHHHHHHHHh----------------------------cCCCCeEEEecCCCCCCHHHHHHHHH
Q 018949 242 GEIAKKLEWYEK----------------------------FTDVDEVIPVSAKYGHGVEDIRDWIL 279 (348)
Q Consensus 242 ~~~~~~~~~~~~----------------------------~~~~~~i~~vSA~~g~gi~eL~~~i~ 279 (348)
.-++...+++.. .....|+|.+|..+|+|++-|...+.
T Consensus 319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 544433333332 23456899999999999987766554
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-08 Score=82.52 Aligned_cols=82 Identities=23% Similarity=0.271 Sum_probs=60.1
Q ss_pred cEEEEEecCCCCCchHHHHHH-HhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILE-EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~-~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
|++++|+|+..+.......+. ..+.. .++|+++|+||+|+.+..........+.... ..+++++||++|.|+++|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEeccCCcChhhHH
Confidence 789999999877654444444 34444 6799999999999987654444443444333 3478999999999999999
Q ss_pred HHHHHh
Q 018949 276 DWILTK 281 (348)
Q Consensus 276 ~~i~~~ 281 (348)
+.+.+.
T Consensus 78 ~~i~~~ 83 (155)
T cd01849 78 SAFTKQ 83 (155)
T ss_pred HHHHHH
Confidence 998764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-08 Score=93.10 Aligned_cols=90 Identities=24% Similarity=0.282 Sum_probs=70.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 176 (348)
..++++|||.||+|||||.|+|...... ..++|.+|.++....+.... ..+.+.|++|+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3458999999999999999999998877 78999999998776543221 25899999999764
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
... ...+...++..++.+|+++.|+++.
T Consensus 98 As~--G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASA--GEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccc--CcCchHHHHHhhhhccceeEEEEec
Confidence 422 2233345667789999999999885
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.7e-08 Score=87.14 Aligned_cols=92 Identities=20% Similarity=0.134 Sum_probs=64.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC--ceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ--KLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~--~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
...|+|+|++++|||+|+|.|++. .+........+|+......... .+..+.++||||+.+..... ...+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~---~~~~~~ 83 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE---FEDDAR 83 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc---hhhhhH
Confidence 347999999999999999999999 7776666677888766554443 35789999999986533221 011112
Q ss_pred Hhhcc--CccEEEEEecCCCCC
Q 018949 190 RSAGI--NADCIVVLVDACKAP 209 (348)
Q Consensus 190 ~~~~~--~ad~iv~VvD~~~~~ 209 (348)
..++. -++++||.++.....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccH
Confidence 22222 489999999886544
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-08 Score=84.80 Aligned_cols=57 Identities=44% Similarity=0.542 Sum_probs=47.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
...+++++|.+|+|||||+|++.+..+..++..+++|.......+. ..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4458999999999999999999998877778888999887665443 45899999996
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-08 Score=82.43 Aligned_cols=92 Identities=26% Similarity=0.355 Sum_probs=65.9
Q ss_pred HHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEec
Q 018949 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 185 ~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (348)
.+.++...+..+|++++|+|++.+.......+...+ .++|+++|+||+|+.+..........+... ..+++.+|
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~vi~iS 82 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESK--GEKVLFVN 82 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhc--CCeEEEEE
Confidence 345667778999999999999876544333333332 357999999999997654333332333322 23689999
Q ss_pred CCCCCCHHHHHHHHHHhC
Q 018949 265 AKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l 282 (348)
|+++.|+++|.+.+...+
T Consensus 83 a~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCCcccHHHHHHHHHHHH
Confidence 999999999999998875
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-08 Score=96.41 Aligned_cols=119 Identities=22% Similarity=0.160 Sum_probs=70.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc-----eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+|.++|.+|||||||+|+|++.. ...++..|+||+......+. ..+.++||||+.... .+...+.....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~---~~~~l~DtPG~~~~~--~~~~~l~~~~l 229 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD---DGHSLYDTPGIINSH--QMAHYLDKKDL 229 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC---CCCEEEECCCCCChh--HhhhhcCHHHH
Confidence 489999999999999999999753 34578999999987755442 236899999986531 22221111111
Q ss_pred h---hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 191 S---AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 191 ~---~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
. --.....+++.++..+...--.-.....+.. .+..+.+.++|.+..-.
T Consensus 230 ~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~--~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 230 KYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG--EKTSFTFYVSNELNIHR 281 (360)
T ss_pred hhcCCCCccCceEEEeCCCCEEEEceEEEEEEecC--CceEEEEEccCCceeEe
Confidence 1 1234566777777654331111011111222 34556667777665543
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=93.99 Aligned_cols=144 Identities=25% Similarity=0.277 Sum_probs=83.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--------------------------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG-------------------------------------- 156 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~-------------------------------------- 156 (348)
.-+|+|.|.+++||||++|+++..+..+ +...++|......
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP-~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLP-SGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCc-ccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 3389999999999999999999777653 2222222211110
Q ss_pred -------EEeCC-----CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhccccc
Q 018949 157 -------ICSGP-----EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK 224 (348)
Q Consensus 157 -------~~~~~-----~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~ 224 (348)
.++.+ ...+.++|.||+.-.. .....+-+....+|++|||+.+.+..+.....+......
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~s------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~-- 259 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE-- 259 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCch------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc--
Confidence 01111 1258899999973211 111223344689999999999987665544444443333
Q ss_pred CCCCEEEEEeccCCCChh--hHHHHHHHHHhc------CCCCeEEEecCCC
Q 018949 225 DKLPILLVLNKKDLIKPG--EIAKKLEWYEKF------TDVDEVIPVSAKY 267 (348)
Q Consensus 225 ~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~------~~~~~i~~vSA~~ 267 (348)
.+..+.|+.||+|..... ..+....++... .-...+++|||+.
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 334456677899987532 122222332211 1223689999764
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.1e-08 Score=80.45 Aligned_cols=82 Identities=23% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCC
Q 018949 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
..+...+..+|++++|+|++.+.......+.+.+.....++|+++|+||+|+.+..........+.... .+++++||+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~--~~ii~iSa~ 80 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFFSAL 80 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC--CeEEEEEec
Confidence 345677899999999999988775554455555544224789999999999986655444444444433 478999999
Q ss_pred CCCC
Q 018949 267 YGHG 270 (348)
Q Consensus 267 ~g~g 270 (348)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8875
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-07 Score=80.16 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=82.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-------ecCCCCceEEeEE-EEEeCCC--eeEEEEeCCCCchh-----hhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-------VTNKPQTTRHRIL-GICSGPE--YQMILYDTPGIIEK-----KIHML 181 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-------~~~~~~~t~~~~~-~~~~~~~--~~~~l~DtpG~~~~-----~~~~l 181 (348)
.|++||.+|.|||||+|.+...+... ..+.+.|+..... .++..++ .+++++||||+++. .+..+
T Consensus 48 NIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI 127 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPI 127 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHH
Confidence 79999999999999999987654321 1234444433322 2333333 56889999999773 23333
Q ss_pred HHHHHHHHHhhc--------------cCccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH
Q 018949 182 DSMMMKNVRSAG--------------INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (348)
Q Consensus 182 ~~~~~~~~~~~~--------------~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 246 (348)
.....+....|+ .+.++|+|.+..+. .....+..+++-+. .-+.+|-|+-|.|-..-++...
T Consensus 128 ~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt---~vvNvvPVIakaDtlTleEr~~ 204 (336)
T KOG1547|consen 128 EKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLT---EVVNVVPVIAKADTLTLEERSA 204 (336)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHh---hhheeeeeEeecccccHHHHHH
Confidence 333333333332 24688999998864 34555544444332 3467788999999887666555
Q ss_pred HHHHHH
Q 018949 247 KLEWYE 252 (348)
Q Consensus 247 ~~~~~~ 252 (348)
+.+.+.
T Consensus 205 FkqrI~ 210 (336)
T KOG1547|consen 205 FKQRIR 210 (336)
T ss_pred HHHHHH
Confidence 544444
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=86.53 Aligned_cols=93 Identities=24% Similarity=0.334 Sum_probs=68.6
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.+.+...+..+|++++|+|+..+.......+.+.+ .++|+++|+||+|+.+..........+.. .+ .+++++||
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-~~-~~vi~iSa 85 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEE-KG-IKALAINA 85 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHH-cC-CeEEEEEC
Confidence 35566778999999999999876654444454444 35799999999999765444443344433 22 37899999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
+++.|+++|.+.+.+.++.
T Consensus 86 ~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 9999999999999887654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.5e-08 Score=83.27 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=82.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|.++|.+|+||||+-..+..+..+.....+|.|.+.....+..- ..-+.+||+.| ++. -+...+...--..+.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGg--qe~--fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGG--QEE--FMENYLSSQEDNIFR 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCC--cHH--HHHHHHhhcchhhhe
Confidence 3899999999999999988887665555667777777666555433 36789999999 432 122222222223468
Q ss_pred CccEEEEEecCCCCC-chHH---HHHHHhcccccCCCCEEEEEeccCCCChhh
Q 018949 195 NADCIVVLVDACKAP-ERID---EILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~-~~~~---~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
..+++++|+|+.... +... +..++.+....+...+...+.|+|+...+.
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 899999999997654 2111 122222333336677889999999986543
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-07 Score=84.50 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=61.5
Q ss_pred hccCccEEEEEecCCCCC---chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++.++|.+++|+|++++. .....++ ..+.. .++|+++|+||+||.+..... +....+.. .+ .+++.+||++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l-~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g-~~v~~~SAkt 107 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFL-VVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IG-YQVLMTSSKN 107 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHH-HHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CC-CeEEEEecCC
Confidence 478999999999998654 2333333 33333 679999999999997644432 33344443 33 4799999999
Q ss_pred CCCHHHHHHHHHHh
Q 018949 268 GHGVEDIRDWILTK 281 (348)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (348)
|.|+++|++.+.+.
T Consensus 108 g~gi~eLf~~l~~~ 121 (245)
T TIGR00157 108 QDGLKELIEALQNR 121 (245)
T ss_pred chhHHHHHhhhcCC
Confidence 99999999988753
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.8e-07 Score=84.45 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=98.5
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceee-------------ecCCCCceEE-------------------------e
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-------------VTNKPQTTRH-------------------------R 153 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~-------------~~~~~~~t~~-------------------------~ 153 (348)
+.-..+|+++|...+|||||+-.|....... .....+.|.. .
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 3445699999999999999998775322110 0000011100 0
Q ss_pred EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEE
Q 018949 154 ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 233 (348)
Q Consensus 154 ~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 233 (348)
...++.....-++++|.+|+ +.+-..-- +-..-+-.|..++++.+..+.-...+..+.+.-. ..+|+++|+
T Consensus 210 WvkIce~saKviTFIDLAGH--EkYLKTTv-----FGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALa--L~VPVfvVV 280 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGH--EKYLKTTV-----FGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALA--LHVPVFVVV 280 (641)
T ss_pred ceeeccccceeEEEEeccch--hhhhheee-----eccccCCCCceEEEecccccceeccHHhhhhhhh--hcCcEEEEE
Confidence 11112222335889999994 32211100 0011356789999999988775555555554444 679999999
Q ss_pred eccCCCChhhHHHHHHHHHh----------------------------cCCCCeEEEecCCCCCCHHHHHHHHH
Q 018949 234 NKKDLIKPGEIAKKLEWYEK----------------------------FTDVDEVIPVSAKYGHGVEDIRDWIL 279 (348)
Q Consensus 234 NK~Dl~~~~~~~~~~~~~~~----------------------------~~~~~~i~~vSA~~g~gi~eL~~~i~ 279 (348)
+|+|..+..-+++.+..+.+ ....+|+|.+|-.+|.|++-|...+.
T Consensus 281 TKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 281 TKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred EeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence 99999987766655544432 12347999999999999987666553
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-08 Score=90.62 Aligned_cols=57 Identities=35% Similarity=0.342 Sum_probs=43.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCC-------ceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
.++|+|.+|||||||||+|++.....+...++ ||++.....+..+ ..++||||+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 58999999999999999999877655555665 7777654444333 279999998653
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-07 Score=78.16 Aligned_cols=57 Identities=37% Similarity=0.568 Sum_probs=44.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
...+++++|.+|+|||||+|++.+.....+++.+++|........ +..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc---CCCEEEEECcCC
Confidence 345899999999999999999998776666778888766443222 235899999994
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-07 Score=88.56 Aligned_cols=57 Identities=28% Similarity=0.308 Sum_probs=41.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCC-------ceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
.++|+|.+|||||||||+|++.....+...+. ||.......+..+ ..++||||+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 58999999999999999999887654444443 5655554444333 359999998653
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=90.20 Aligned_cols=57 Identities=42% Similarity=0.519 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC-----ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
.++.++|.+|||||||+|+|++. +...++..|+||+......+..+ ..++||||+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCccc
Confidence 47999999999999999999853 23447899999998776554332 58999999853
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.6e-08 Score=89.50 Aligned_cols=65 Identities=29% Similarity=0.423 Sum_probs=54.1
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (348)
+++.+...|+++|+||+||||+||.|...+++.+++.||.|+..+...+. .++.|+||||++-..
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGvVyps 366 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGVVYPS 366 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCccCCC
Confidence 44566778999999999999999999999999999999999876544332 458999999987543
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.7e-07 Score=82.39 Aligned_cols=92 Identities=24% Similarity=0.361 Sum_probs=67.0
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.+.....+..+|++++|+|+..+.......+...+ .++|+++|+||+|+.+..........+... + .+++++||
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~-~-~~vi~vSa 88 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSENPMIDKII----GNKPRLLILNKSDLADPEVTKKWIEYFEEQ-G-IKALAINA 88 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh----CCCCEEEEEEchhcCCHHHHHHHHHHHHHc-C-CeEEEEEC
Confidence 35566778999999999999877654444454443 258999999999997654333333333322 2 46899999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
+++.|+++|++.+.+.++
T Consensus 89 ~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLK 106 (287)
T ss_pred CCcccHHHHHHHHHHHHH
Confidence 999999999999887654
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.4e-07 Score=85.37 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=61.3
Q ss_pred ccCccEEEEEecCCCCC-ch--HHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~-~~--~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.++|.+++|+|+.++. .. .+.++. .... .++|+++|+||+|+.+..+.......+.. .+. +++++||++|.
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~-~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~-~g~-~v~~iSA~tg~ 161 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLV-KAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQ-WGY-QPLFISVETGI 161 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHh-cCC-eEEEEEcCCCC
Confidence 68999999999997654 22 233333 3333 67999999999999876555444444433 333 78999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++|++.+...+
T Consensus 162 GI~eL~~~L~~ki 174 (352)
T PRK12289 162 GLEALLEQLRNKI 174 (352)
T ss_pred CHHHHhhhhccce
Confidence 9999999887543
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.5e-07 Score=75.84 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=43.8
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchH--HHHHHHhcccccCCCCEEEEEeccCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~--~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
..+..++||||+.+. ...+...+........-.+|.+++++|+.+..... ...+..++.. . -++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p-~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~--a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADP-GPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF--A---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCH-HHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH--C---CEEEEecccC
Confidence 457899999998653 23333333344445567889999999986533221 1223333333 2 2779999996
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.2e-06 Score=78.35 Aligned_cols=149 Identities=15% Similarity=0.251 Sum_probs=80.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCc-----------eEEeEEEEE------------------e
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT-----------TRHRILGIC------------------S 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~-----------t~~~~~~~~------------------~ 159 (348)
...|+++|++|+||||++..|.+ .++..+...+.. .+.....+. .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 44899999999999999998753 233322221110 000001000 1
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh-----ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEe
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA-----GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~-----~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 234 (348)
..++.++++||||..+.....+. .+ ..+... -..++.+++|+|++.+...... .....+. -.+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~-eL-~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-a~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLME-EL-KKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-AKAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHH-HH-HHHHHHHhhhcCCCCceEEEEEECCCChHHHHH-HHHHHhh---CCCCEEEEE
Confidence 24567999999996543322221 11 111111 1356789999999876544332 2222221 134478999
Q ss_pred ccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 235 K~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
|.|....- -..+...... + .|+..++ +|+++++|.
T Consensus 268 KlD~t~~~--G~~l~~~~~~-~-~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKG--GVVFAIADEL-G-IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCc--cHHHHHHHHH-C-CCEEEEe--CCCChhhCc
Confidence 99965321 1122222222 2 3788887 888887764
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-07 Score=82.83 Aligned_cols=57 Identities=30% Similarity=0.267 Sum_probs=40.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC-------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
..++++|++|||||||+|+|++.....+.. ..+||++.....+ .+ -.++||||+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~---~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG---GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC---cEEEeCCCcccc
Confidence 379999999999999999999865432222 2336766655444 22 379999998653
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-07 Score=77.47 Aligned_cols=58 Identities=29% Similarity=0.340 Sum_probs=35.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee---c----CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---T----NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~---~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
..++++|++|||||||+|+|++.....+ + ....||.......+.. ...++||||+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCcc
Confidence 3799999999999999999998743221 1 2224455444433322 3689999997553
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-06 Score=81.30 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=68.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCC-----------ceEE--eEEEEEe----------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-----------TTRH--RILGICS---------------- 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~-----------~t~~--~~~~~~~---------------- 159 (348)
+..|+++|.+|+||||++..|. |.++..++..+. ..+. +......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999985 555554443221 1111 1111111
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
..++.++++||||..+.... +-..+.. .. ....+|.+++|+|++.+..... ....+.. .-.+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~-lm~El~~-i~-~~~~p~e~lLVlda~~Gq~a~~--~a~~F~~--~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDS-LFEEMLQ-VA-EAIQPDNIIFVMDGSIGQAAEA--QAKAFKD--SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHH-HHHHHHH-Hh-hhcCCcEEEEEeccccChhHHH--HHHHHHh--ccCCcEEEEECccCC
Confidence 12578999999996443222 2222211 11 1346789999999987643321 2223222 223567899999975
Q ss_pred C
Q 018949 240 K 240 (348)
Q Consensus 240 ~ 240 (348)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.8e-06 Score=74.60 Aligned_cols=160 Identities=19% Similarity=0.161 Sum_probs=92.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC----CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG----PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.|.++|..++||||||.+|-|..- ...+.-.......+.. +..++.+|-.-| +....++ ...++.+
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e~----~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDG--d~~h~~L----Lk~al~a 123 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSET----VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDG--DLYHKGL----LKFALPA 123 (473)
T ss_pred eEEEEccCCCchhHHHHHhhcccc----cCCCCCcceEEEecccccchhhhhcceEEecC--chhhhhH----Hhhcccc
Confidence 799999999999999999998652 2333333332222222 223455666556 3222222 2222222
Q ss_pred ccCc-cEEEEEecCCCCCc---hHHH----------------------------HHHHhccc------------------
Q 018949 193 GINA-DCIVVLVDACKAPE---RIDE----------------------------ILEEGVGD------------------ 222 (348)
Q Consensus 193 ~~~a-d~iv~VvD~~~~~~---~~~~----------------------------~~~~~~~~------------------ 222 (348)
-.-+ .++|+++|.+++.. .... .|.+++.-
T Consensus 124 ts~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~ 203 (473)
T KOG3905|consen 124 TSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSS 203 (473)
T ss_pred cCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCc
Confidence 2222 36778888887741 1111 11111100
Q ss_pred ---------------ccCCCCEEEEEeccCCCCh----hh--------HHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 223 ---------------HKDKLPILLVLNKKDLIKP----GE--------IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 223 ---------------~~~~~p~ivv~NK~Dl~~~----~~--------~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
..-++|++||++|+|.+.. .+ +...+..++...+. ..+.+|++...|++-|.
T Consensus 204 ~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidlly 282 (473)
T KOG3905|consen 204 ADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLY 282 (473)
T ss_pred cccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHH
Confidence 0146899999999998532 11 12223333334443 67999999999999999
Q ss_pred HHHHHhCCCCCC
Q 018949 276 DWILTKLPLGPA 287 (348)
Q Consensus 276 ~~i~~~l~~~~~ 287 (348)
.+|..+.-.-+.
T Consensus 283 KYivhr~yG~~f 294 (473)
T KOG3905|consen 283 KYIVHRSYGFPF 294 (473)
T ss_pred HHHHHHhcCccc
Confidence 999988755433
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=80.81 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=58.1
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh-hhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP-GEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.++|++++|+|++++. ......++..+.. .++|+++|+||+|+... .........+.. .+ .+++++||+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-~g-~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRA-IG-YDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHH-CC-CeEEEEeCCCCc
Confidence 58999999999997654 2222333333444 67999999999999733 222233333333 23 379999999999
Q ss_pred CHHHHHHHHHH
Q 018949 270 GVEDIRDWILT 280 (348)
Q Consensus 270 gi~eL~~~i~~ 280 (348)
|+++|++.+..
T Consensus 154 gi~~L~~~l~g 164 (298)
T PRK00098 154 GLDELKPLLAG 164 (298)
T ss_pred cHHHHHhhccC
Confidence 99999988754
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.7e-06 Score=77.37 Aligned_cols=152 Identities=20% Similarity=0.341 Sum_probs=90.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc----eeee-------cCC----CCc----eEEeEEE-E-Ee---------------C
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK----LSIV-------TNK----PQT----TRHRILG-I-CS---------------G 160 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~----~~~~-------~~~----~~~----t~~~~~~-~-~~---------------~ 160 (348)
..+|-|.-|+|||||+|.++... .+.. ... ... ......+ + ++ .
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 56788999999999999998432 2221 111 000 0000000 0 01 2
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHH---HHHHHhcccccCCCCEEEEEeccC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID---EILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~---~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
+.....++.|.|+.+.. ...............-..|.+|-|||+.+-..... .....++.. .=+||+||+|
T Consensus 83 ~~~D~ivIEtTGlA~P~-pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~D 156 (323)
T COG0523 83 DRPDRLVIETTGLADPA-PVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTD 156 (323)
T ss_pred CCCCEEEEeCCCCCCCH-HHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEeccc
Confidence 23568899999987642 22222222122223346688999999986553332 333334333 2389999999
Q ss_pred CCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+.++..+......+.+..+..+++.+|. .+.+..+++
T Consensus 157 lv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 157 LVDAEELEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 9998877777778888888888998887 334444443
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-07 Score=87.22 Aligned_cols=64 Identities=34% Similarity=0.440 Sum_probs=54.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
.+..+|||+|.|||||||+||+|...+.+.+.+.||.|+......++ ..+.|+|.||++-.+.+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld---k~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD---KKIRLLDSPGIVPPSID 313 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc---CCceeccCCceeecCCC
Confidence 45669999999999999999999999999999999999987765554 45999999998764433
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=80.71 Aligned_cols=91 Identities=30% Similarity=0.308 Sum_probs=62.4
Q ss_pred HHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh----hHHHHHHHHHhcCCC--CeE
Q 018949 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEV 260 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i 260 (348)
.....+...++++++|+|+.+........+.+.+ .+.|+++|+||+|+.+.. .+...........+. ..+
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 3344556788999999999776655444444443 367999999999997532 222222222222333 258
Q ss_pred EEecCCCCCCHHHHHHHHHHh
Q 018949 261 IPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~ 281 (348)
+.+||++|.|+++|++.|.+.
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHH
Confidence 999999999999999999765
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.5e-06 Score=71.15 Aligned_cols=136 Identities=22% Similarity=0.370 Sum_probs=77.3
Q ss_pred EEEEEcCCCCChHHHHHHHh-----CCceeeecCCCCce----------EEeEEEE--------------------EeCC
Q 018949 117 YVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTT----------RHRILGI--------------------CSGP 161 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~-----~~~~~~~~~~~~~t----------~~~~~~~--------------------~~~~ 161 (348)
.+.|.|..|+|||||++.++ +.+........+.. ....... ....
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 57899999999999999998 33444333222210 0001111 1122
Q ss_pred --CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 162 --EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 162 --~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
.....++.+.|+.+.. .+ .+........-..+.+|.|+|+.+-. ......+...+.. .+ ++|+||+|
T Consensus 82 ~~~~d~IiIE~sG~a~p~--~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--AD---vIvlnK~D 152 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPA--PL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF--AD---VIVLNKID 152 (178)
T ss_dssp HGC-SEEEEEEECSSGGG--GH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---S---EEEEE-GG
T ss_pred CCCcCEEEECCccccccc--hh--hhccccccccccccceeEEeccccccccccchhhhhhcchh--cC---EEEEeccc
Confidence 3578999999976533 22 11122222234678999999996521 2233444445444 22 88999999
Q ss_pred CCChh-hHHHHHHHHHhcCCCCeEE
Q 018949 238 LIKPG-EIAKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 238 l~~~~-~~~~~~~~~~~~~~~~~i~ 261 (348)
+.+.. .+......++...+..+++
T Consensus 153 ~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 153 LVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp GHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred cCChhhHHHHHHHHHHHHCCCCEEe
Confidence 99876 3366666777766666655
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=72.74 Aligned_cols=149 Identities=16% Similarity=0.235 Sum_probs=79.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCc-----------eEEeEEEE------------------Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TRHRILGI------------------CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~-----------t~~~~~~~------------------~~ 159 (348)
...|+++|++|+||||++..+. |.++..+...+.. .+...... ..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999988874 2333333222100 00000000 01
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc-----cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEe
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~-----~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 234 (348)
..++.+.++||||..+.....+ ..+ ..+.... ..+|.+++|+|++.+..... ......+. . .+.-+|+|
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~-~el-~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~-~~~~f~~~--~-~~~g~IlT 225 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLM-DEL-KKIKRVIKKVDKDAPDEVLLVLDATTGQNALE-QAKVFNEA--V-GLTGIILT 225 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHH-HHH-HHHHHHHhcccCCCCceEEEEEECCCCHHHHH-HHHHHHhh--C-CCCEEEEE
Confidence 2457899999999654221111 111 1121222 24899999999986543332 23333322 1 24578999
Q ss_pred ccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 235 K~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
|.|....-- ..+...... + .|+..++ +|++++++.
T Consensus 226 KlDe~~~~G--~~l~~~~~~-~-~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGG--IILSIAYEL-K-LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCcc--HHHHHHHHH-C-cCEEEEe--CCCChHhCc
Confidence 999864321 112222222 2 3777777 888887654
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.4e-06 Score=81.09 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=75.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..|+++|+||+||||||.+|+..--.. .....| -..++.++..+++++.||. + + ..+...
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~--D-----l-----~~miDv 130 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECPS--D-----L-----HQMIDV 130 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeChH--H-----H-----HHHHhH
Confidence 34468899999999999999987532110 011111 1223456667899999995 2 1 112233
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCCh
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKP 241 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~ 241 (348)
..-||+|++++|+.-+++-..-.++.++.. .+.|-| -|++..|+...
T Consensus 131 aKIaDLVlLlIdgnfGfEMETmEFLnil~~--HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 131 AKIADLVLLLIDGNFGFEMETMEFLNILIS--HGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred HHhhheeEEEeccccCceehHHHHHHHHhh--cCCCceEEEEeecccccC
Confidence 578999999999999987777777777776 566755 58999999754
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.4e-06 Score=78.07 Aligned_cols=83 Identities=24% Similarity=0.319 Sum_probs=58.5
Q ss_pred ccCccEEEEEecCCCCC---chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.++|++++|+|+..+. ...+. ++..+.. .++|+++|+||+|+.+..+.......... .+ .+++++||+++.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-~g-~~v~~vSA~~g~ 150 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALA-LG-YPVLAVSAKTGE 150 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHh-CC-CeEEEEECCCCc
Confidence 67999999999998765 23333 3333344 57999999999999765332222222222 33 489999999999
Q ss_pred CHHHHHHHHHH
Q 018949 270 GVEDIRDWILT 280 (348)
Q Consensus 270 gi~eL~~~i~~ 280 (348)
|+++|+..+..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999988764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-06 Score=79.79 Aligned_cols=61 Identities=30% Similarity=0.364 Sum_probs=40.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee---ec----CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI---VT----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~---~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
....+++|++|||||||+|+|.+..... ++ ..-+||.+.....+..+| .++||||+.+...
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 3379999999999999999998743221 22 223456655544443333 6899999865443
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.3e-06 Score=76.21 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=48.2
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC------------chHHHHHHHhccc-cc
Q 018949 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD-HK 224 (348)
Q Consensus 158 ~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~------------~~~~~~~~~~~~~-~~ 224 (348)
+..++..+.+||++|. ... ...+..++..+++++||+|.++-. .+....+..++.. ..
T Consensus 156 f~~~~~~~~~~DvgGq--~~~-------R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 156 FTIKNLKFRMFDVGGQ--RSE-------RKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred EEecceEEEEECCCCC--ccc-------chhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 3445677999999994 222 234556688999999999998631 1111222222222 12
Q ss_pred CCCCEEEEEeccCCCC
Q 018949 225 DKLPILLVLNKKDLIK 240 (348)
Q Consensus 225 ~~~p~ivv~NK~Dl~~ 240 (348)
.+.|+++++||.|+..
T Consensus 227 ~~~pill~~NK~D~f~ 242 (317)
T cd00066 227 ANTSIILFLNKKDLFE 242 (317)
T ss_pred cCCCEEEEccChHHHH
Confidence 5799999999999753
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.5e-06 Score=69.28 Aligned_cols=114 Identities=20% Similarity=0.151 Sum_probs=64.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|..|+|||+|+.++....+.. .+.. .|.. +..+| ..+.+.+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~-~~~~-~t~~------------~~~~~--------------------~~~~~s~ 47 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDY-VPTV-FTIG------------IDVYD--------------------PTSYESF 47 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCccc-cCce-ehhh------------hhhcc--------------------ccccCCC
Confidence 79999999999999999996655431 1110 1111 11111 1124577
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+.++.|++.+........+........+.+.|.++++||.|+........... .+++.+|+++|.|+.
T Consensus 48 ~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 48 DVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred CEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 88887777765432211133222222235688999999999843222111100 134667999999884
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-06 Score=79.50 Aligned_cols=57 Identities=32% Similarity=0.310 Sum_probs=38.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCC-------CceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
..++++|++|||||||+|+|++.....+...+ .||+......+... ..++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 37999999999999999999986543222222 35554443333322 48899999864
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.7e-06 Score=79.65 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=94.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCcee------------------------eecCC------CCceEEeEEEEEeCC
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IVTNK------PQTTRHRILGICSGP 161 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~------------------------~~~~~------~~~t~~~~~~~~~~~ 161 (348)
+....++.++|+..+||||+-..|+..... +..++ -+.|...-...+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 345568999999999999998887642211 11111 234444445556666
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-------chHHHHHHHhcccccCCCCEEEEEe
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLN 234 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p~ivv~N 234 (348)
...+.+.|+||+... ...+..-..+||+.++|+.+..+. -.+......+.+.. .-...|+++|
T Consensus 156 ~~~ftiLDApGHk~f---------v~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vN 225 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSF---------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLIN 225 (501)
T ss_pred ceeEEeeccCccccc---------chhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEE
Confidence 778999999995332 223334467899999999986432 11222233333332 3356899999
Q ss_pred ccCCCChh----hHHHHHHHHH---hcC-----CCCeEEEecCCCCCCHHHHHH
Q 018949 235 KKDLIKPG----EIAKKLEWYE---KFT-----DVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 235 K~Dl~~~~----~~~~~~~~~~---~~~-----~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|+|-+..+ ...+....+. ... ....++++|..+|.++.+...
T Consensus 226 KMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 226 KMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 99987432 1122221111 111 123579999999999988664
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.3e-06 Score=77.42 Aligned_cols=57 Identities=35% Similarity=0.391 Sum_probs=39.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeec-------CCCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
..++++|++|||||||+|+|++.....+. ...+||.......+... ..++||||+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCc
Confidence 47999999999999999999986543221 12235655544333322 36899999844
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=6e-06 Score=77.68 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=78.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCc---e--------E--EeEEE-E---------------E
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT---T--------R--HRILG-I---------------C 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~---t--------~--~~~~~-~---------------~ 158 (348)
++..|+++|.+|+||||++..+.. .++..+...+.. . . ..... . .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 345899999999999998877642 223222211100 0 0 00000 0 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
...+..++++||+|..+.....+.. + +.+.. ....|.+++|+|++.+.... ......... . ..--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~e-L-~~i~~-~~~pd~~iLVl~a~~g~d~~-~~a~~f~~~--~-~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDE-L-KKIVR-VTKPDLVIFVGDALAGNDAV-EQAREFNEA--V-GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHH-H-HHHHH-hhCCceEEEeeccccchhHH-HHHHHHHhc--C-CCCEEEEeeecC
Confidence 1234579999999975432222211 1 11212 23578999999997654222 222222222 1 234688999998
Q ss_pred CChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
...-- ..+...... ..|+..++ +|++++++.
T Consensus 292 ~~~~G--~~ls~~~~~--~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 292 DAKGG--AALSIAYVI--GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred CCCcc--HHHHHHHHH--CcCEEEEe--CCCChhhcc
Confidence 64221 112222221 23778877 799998765
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-05 Score=76.15 Aligned_cols=90 Identities=26% Similarity=0.255 Sum_probs=61.4
Q ss_pred HHhhccCcc-EEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh----hHHHHHHHHHhcCCC--CeEE
Q 018949 189 VRSAGINAD-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVI 261 (348)
Q Consensus 189 ~~~~~~~ad-~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i~ 261 (348)
..+.+...| +|++|+|+.+........+.+.. .+.|+++|+||+|+.+.. .+...........+. ..++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 445556666 99999999876555444444433 367999999999997532 222233333333332 2689
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+||++|.|+++|++.|.+..
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 999999999999999998764
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.8e-05 Score=74.67 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCCEEEEEeccCCCCh---------hh---HHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCC
Q 018949 226 KLPILLVLNKKDLIKP---------GE---IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY 288 (348)
Q Consensus 226 ~~p~ivv~NK~Dl~~~---------~~---~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~ 288 (348)
++|++||++|+|.... .. +...+..+.-..+. ..+.+|++...+++-|+.+|...+...+..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h~l~~~~f~ 269 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILHRLYGFPFK 269 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHHHhccCCCC
Confidence 4799999999997531 11 12222333333443 678899999999999999999888654443
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-05 Score=75.02 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=66.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC--------ceeeecCCCCc-------------eEEeEEEE----------EeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQT-------------TRHRILGI----------CSGPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~--------~~~~~~~~~~~-------------t~~~~~~~----------~~~~~ 162 (348)
+...++++|++||||||++.+|... ++..++..... -....... ....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 3458999999999999999998632 12222111100 00000001 11235
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCC-------CEEEEEec
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-------PILLVLNK 235 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~-------p~ivv~NK 235 (348)
..++++||||..+... .+...+ ... .....+.-.++|++++.+.......+..+... ... +-=+|+||
T Consensus 216 ~DlVLIDTaG~~~~d~-~l~e~L-a~L-~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~--~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 216 KHMVLIDTIGMSQRDR-TVSDQI-AML-HGADTPVQRLLLLNATSHGDTLNEVVQAYRSA--AGQPKAALPDLAGCILTK 290 (374)
T ss_pred CCEEEEcCCCCCcccH-HHHHHH-HHH-hccCCCCeEEEEecCccChHHHHHHHHHHHHh--hcccccccCCCCEEEEec
Confidence 6799999999653221 111111 111 12234556789999988776665555444332 111 23577899
Q ss_pred cCCCC
Q 018949 236 KDLIK 240 (348)
Q Consensus 236 ~Dl~~ 240 (348)
.|-..
T Consensus 291 lDEt~ 295 (374)
T PRK14722 291 LDEAS 295 (374)
T ss_pred cccCC
Confidence 99764
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=75.01 Aligned_cols=85 Identities=26% Similarity=0.379 Sum_probs=58.5
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh---HHHHHHHHHhcCCCCeEEEecCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
..++|.+++|++..... ...+.++. .... .++|.++|+||+|+.+..+ .......+.. .+ .+++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~-~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-~g-~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLV-ACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-IG-YRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHH-HHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHh-CC-CeEEEEeCCC
Confidence 46799999998876443 33344433 3333 6799999999999986442 2222233322 23 4899999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
+.|+++|++.+...+
T Consensus 193 g~GideL~~~L~~ki 207 (347)
T PRK12288 193 GEGLEELEAALTGRI 207 (347)
T ss_pred CcCHHHHHHHHhhCC
Confidence 999999999997643
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.3e-05 Score=75.62 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=91.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe-E-EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-I-LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~-~-~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...+-++|+.++|||.++++++|..+.. +....+.... . ...+.....-+.|.|.+-..+ ..+. ..
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~---~~l~--------~k 492 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQ---DFLT--------SK 492 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcccc---cccc--------Cc
Confidence 3378999999999999999999977653 2222111111 1 111223344466666654211 1110 11
Q ss_pred ccCccEEEEEecCCCCCchHH-HHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 193 GINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
-..||++++++|.+++..... ..+.+..... ...|+++|++|+|+....+ ..-....+....+..+.+.+|.++...
T Consensus 493 e~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 493 EAACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS 571 (625)
T ss_pred cceeeeEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence 158999999999986542211 1222222222 6799999999999975431 111124444555555667777775222
Q ss_pred HHHHHHHHHHhCCC
Q 018949 271 VEDIRDWILTKLPL 284 (348)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (348)
.++|..|..+...
T Consensus 572 -~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 572 -NELFIKLATMAQY 584 (625)
T ss_pred -chHHHHHHHhhhC
Confidence 8899999887765
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6e-06 Score=75.14 Aligned_cols=64 Identities=38% Similarity=0.449 Sum_probs=49.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC-----CceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG-----QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...|.|+|.||+|||||+|++.. .+.+.+...||.|+.....+.-.....+.++||||......
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCC
Confidence 34899999999999999999752 24556788999998877655444556799999999876543
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=98.06 E-value=6e-05 Score=71.40 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=84.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC----ceeeecCCCCce----------------EEeEEEE-----------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT----------------RHRILGI----------------- 157 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~----~~~~~~~~~~~t----------------~~~~~~~----------------- 157 (348)
.+..++.|..|+|||||+|.++.. +.....+..+.. .......
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~l 83 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPTM 83 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHHH
Confidence 346888899999999999999743 222221111110 0001100
Q ss_pred ---Ee-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCc-----------------------
Q 018949 158 ---CS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE----------------------- 210 (348)
Q Consensus 158 ---~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~----------------------- 210 (348)
.. .......++.|.|+.+.. .+-..+........-..|.+|.|+|+.+...
T Consensus 84 ~~l~~~~~~~d~IvIEtsG~a~P~--~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (341)
T TIGR02475 84 TKLLARRQRPDHILIETSGLALPK--PLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHE 161 (341)
T ss_pred HHHHhccCCCCEEEEeCCCCCCHH--HHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccccc
Confidence 01 123568899999986532 2222221111111225688999999974321
Q ss_pred -hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC-CCeEEEecCCCCCCHHHHHH
Q 018949 211 -RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 211 -~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~i~~vSA~~g~gi~eL~~ 276 (348)
.....+..++.. .-+|++||+|+.+..++......++...+ ..+++.++ ........++.
T Consensus 162 ~~~~~~~~~Qi~~-----AD~IvlnK~Dl~~~~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 162 TPLEELFEDQLAC-----ADLVILNKADLLDAAGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred chHHHHHHHHHHh-----CCEEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 001122233322 23899999999998888877777776444 34666654 22334555544
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-05 Score=68.93 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=41.8
Q ss_pred eEEEEeCCCCchh-hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHh----cccccCCCCEEEEEeccCC
Q 018949 164 QMILYDTPGIIEK-KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEG----VGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 164 ~~~l~DtpG~~~~-~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~----~~~~~~~~p~ivv~NK~Dl 238 (348)
.+.++|+||.++- ..-.+-..+.+....+ .---+++|++|+.--. ...+.+... .......+|.|=|++|+|+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~-~F~~c~Vylldsqf~v-D~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQW-NFNVCVVYLLDSQFLV-DSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcc-cCceeEEEEeccchhh-hHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 5899999996542 1112223333444442 2234678888874221 111221111 1111257999999999999
Q ss_pred CCh
Q 018949 239 IKP 241 (348)
Q Consensus 239 ~~~ 241 (348)
...
T Consensus 177 lk~ 179 (273)
T KOG1534|consen 177 LKD 179 (273)
T ss_pred hhh
Confidence 865
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.8e-05 Score=70.32 Aligned_cols=142 Identities=21% Similarity=0.341 Sum_probs=76.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC----ceeeecCCCCce-----------EEeEE---E-EE-eC--------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT-----------RHRIL---G-IC-SG-------------- 160 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~----~~~~~~~~~~~t-----------~~~~~---~-~~-~~-------------- 160 (348)
.+..++.|.-|+|||||+|.++.. +.+...+..|.. ..... + ++ ..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~~ 83 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHHH
Confidence 357889999999999999999843 222211111110 00000 0 00 00
Q ss_pred -----CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHH--HHHHHhcccccCCCCEEEEE
Q 018949 161 -----PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVL 233 (348)
Q Consensus 161 -----~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~ 233 (348)
......++.|.|+.+.. .-+...+........-..+.+|.|+|+.+...... .....++.. .-+||+
T Consensus 84 ~~~~~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-----AD~Ivl 157 (318)
T PRK11537 84 LDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-----ADRILL 157 (318)
T ss_pred HhccCCCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-----CCEEEE
Confidence 02567899999986522 22222111111111224588999999975432111 122222222 238999
Q ss_pred eccCCCChhhHHHHHHHHHhcCCCCeEEEec
Q 018949 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 234 NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (348)
||+|+.+.. ......++...+..+++.++
T Consensus 158 nK~Dl~~~~--~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 158 TKTDVAGEA--EKLRERLARINARAPVYTVV 186 (318)
T ss_pred eccccCCHH--HHHHHHHHHhCCCCEEEEec
Confidence 999998753 44556666666666777654
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.5e-06 Score=78.96 Aligned_cols=112 Identities=25% Similarity=0.301 Sum_probs=73.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--------------EE-----------------EeCCCeeE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--------------GI-----------------CSGPEYQM 165 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--------------~~-----------------~~~~~~~~ 165 (348)
++.++.+...|||||..+|......+.....+.++..-. .+ -+..+.-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 577888999999999999986554333334433322110 00 12345679
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
+++|.||+++.. .++-.+++-.|++++|+|+-++.=.+.+.++...-. .++.-++++||+|..
T Consensus 101 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~--ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA--ERIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccch---------hhhhheeEeccCcEEEEEccCceEechHHHHHHHHH--hhccceEEeehhhHH
Confidence 999999987754 234456789999999999988874444554443332 344447789999963
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00028 Score=67.16 Aligned_cols=222 Identities=18% Similarity=0.175 Sum_probs=113.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee---------------eecCCCCceEEe----------EEEEEe-CCCeeEEEEeC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHR----------ILGICS-GPEYQMILYDT 170 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~---------------~~~~~~~~t~~~----------~~~~~~-~~~~~~~l~Dt 170 (348)
-|++||+.-+||||||.+|...-+. ......|.|..+ ....+. .-..++.++||
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiDC 98 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLIDC 98 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEee
Confidence 5999999999999999998632110 011222322221 111222 23568999999
Q ss_pred CCCchhhh---------hhhH-------HHHHHH----HHhhcc--CccEEEEEecCCCCC------chHHHHHHHhccc
Q 018949 171 PGIIEKKI---------HMLD-------SMMMKN----VRSAGI--NADCIVVLVDACKAP------ERIDEILEEGVGD 222 (348)
Q Consensus 171 pG~~~~~~---------~~l~-------~~~~~~----~~~~~~--~ad~iv~VvD~~~~~------~~~~~~~~~~~~~ 222 (348)
-|+.-... +-+. -.|.+. +++.+. ..=++|+.-|.+-+. ....+.....++.
T Consensus 99 VGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~ 178 (492)
T PF09547_consen 99 VGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKE 178 (492)
T ss_pred cceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHH
Confidence 98732110 0000 001111 111122 223455555655322 2233445556666
Q ss_pred ccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC--CCCHHHHHHHHHHhCCCC-----CCCCCCcccC
Q 018949 223 HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTKLPLG-----PAYYPKDIVS 295 (348)
Q Consensus 223 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~--g~gi~eL~~~i~~~l~~~-----~~~~~~~~~~ 295 (348)
-++|+++++|=.+-. ..+.......+...++. |++++++.. .+.+..++..++-..|-. .+.|-.....
T Consensus 179 --igKPFvillNs~~P~-s~et~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vLyEFPV~Ei~~~lP~Wve~L~~ 254 (492)
T PF09547_consen 179 --IGKPFVILLNSTKPY-SEETQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVLYEFPVSEININLPKWVEMLED 254 (492)
T ss_pred --hCCCEEEEEeCCCCC-CHHHHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHHhcCCceEEEeecchHHhhcCC
Confidence 689999999977743 34445566667766665 888887653 344555555444322210 1111112222
Q ss_pred CCchHHHHHHHHHHHHHh-----------hccCCCCceEEEEeeEEEeccceEEEeee
Q 018949 296 EHPERFFVGEIIREKIFM-----------QYRNEVPYACQVCNLTFQHWLIFVEFNAF 342 (348)
Q Consensus 296 ~~~~~~~~~e~ire~~~~-----------~~~~eip~~~~~~~~~~~~~~~~~~~~~~ 342 (348)
++..+..+.+.+++.+-. ....+-+|...+.+..+..-.+.+++..-
T Consensus 255 ~Hwlk~~~~~~i~~~~~~i~~irDi~~~~~~~~~~e~i~~~~l~~idlg~G~a~i~i~ 312 (492)
T PF09547_consen 255 DHWLKQSFIEAIKESLQDISKIRDIDKIVDQLSECEYIEKVKLEEIDLGTGSARIDIE 312 (492)
T ss_pred CchHHHHHHHHHHHHHHhccHHhhHHHHHhhccccchhhhcceeeEECCCcEEEEEEE
Confidence 333332233333332211 12245688888888888887777776643
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00014 Score=70.64 Aligned_cols=126 Identities=19% Similarity=0.226 Sum_probs=74.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeee-------------------------------------------------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------------------------- 143 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~------------------------------------------------- 143 (348)
..-++|++||.-++||||.+..+......+-
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 3456999999999999999999865443221
Q ss_pred ----cCCCCceEEeEEE--EEeCCC-eeEEEEeCCCCchhhhh----hhHHHHHHHHHhhccCccEEEEEecCCCCC--c
Q 018949 144 ----TNKPQTTRHRILG--ICSGPE-YQMILYDTPGIIEKKIH----MLDSMMMKNVRSAGINADCIVVLVDACKAP--E 210 (348)
Q Consensus 144 ----~~~~~~t~~~~~~--~~~~~~-~~~~l~DtpG~~~~~~~----~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~ 210 (348)
+...|+|...-.. .+.+.+ .+.+++|.||.+..-.. ............++.+..+||+++--..-. .
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh
Confidence 1111222222111 122222 35889999998653211 112223455677889999999987432211 2
Q ss_pred hHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 211 RIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 211 ~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.....+...+.. .+...|+|++|+|+..
T Consensus 466 SnVTDLVsq~DP--~GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 466 SIVTDLVSQMDP--HGRRTIFVLTKVDLAE 493 (980)
T ss_pred hhHHHHHHhcCC--CCCeeEEEEeecchhh
Confidence 222233334444 5678899999999864
|
|
| >KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=71.13 Aligned_cols=144 Identities=19% Similarity=0.292 Sum_probs=77.5
Q ss_pred CCCCCCccEEEEEcCCCCChHHHHHHHhCC----ceeeecCCCCceEE------------------------eEEEEE--
Q 018949 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTTRH------------------------RILGIC-- 158 (348)
Q Consensus 109 ~~~~~~~~~v~i~G~~~~GKSsLin~l~~~----~~~~~~~~~~~t~~------------------------~~~~~~-- 158 (348)
..+..+.|.-.|.|+-|+|||||+|.++.. +.+...+..|.... .....+
T Consensus 51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~ 130 (391)
T KOG2743|consen 51 SSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKD 130 (391)
T ss_pred cCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecc
Confidence 345556677889999999999999998732 23322222221100 000111
Q ss_pred -----------eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHH-----HHHHHhccc
Q 018949 159 -----------SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-----EILEEGVGD 222 (348)
Q Consensus 159 -----------~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~-----~~~~~~~~~ 222 (348)
.-+.....++.|.|+..+.+ -....+.+.-+..--..|+||-|+|+.+.....+ -.+.+....
T Consensus 131 ~gvraie~lvqkkGkfD~IllETTGlAnPaP-ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 131 NGVRAIENLVQKKGKFDHILLETTGLANPAP-IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred hHHHHHHHHHhcCCCcceEEEeccCCCCcHH-HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 12234678999999866432 1122223333333346799999999965321111 111111111
Q ss_pred ccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC
Q 018949 223 HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (348)
Q Consensus 223 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 255 (348)
-...--+++||.|+....++....+.++...
T Consensus 210 --iA~AD~II~NKtDli~~e~~~~l~q~I~~IN 240 (391)
T KOG2743|consen 210 --IALADRIIMNKTDLVSEEEVKKLRQRIRSIN 240 (391)
T ss_pred --HhhhheeeeccccccCHHHHHHHHHHHHHhh
Confidence 0111247799999998877665555555433
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.1e-05 Score=73.82 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=58.1
Q ss_pred ccCccEEEEEecCCCCCch-HHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 193 GINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
..++|.+++|+++..++.. ..+.++..+.. .++|.+||+||+|+.+... .....+.......+++.+|+++|.|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDAE--EKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCcEEEEECCCCccH
Confidence 4789999999999755533 33344444444 6788899999999986421 12223333233358999999999999
Q ss_pred HHHHHHHH
Q 018949 272 EDIRDWIL 279 (348)
Q Consensus 272 ~eL~~~i~ 279 (348)
++|..++.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99999885
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6e-05 Score=65.73 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=63.3
Q ss_pred EEEEEcCCCCChHHHHHHHh------CCceeeecCCCCc---e----------EEeEEEE----------------EeCC
Q 018949 117 YVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT---T----------RHRILGI----------------CSGP 161 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~---t----------~~~~~~~----------------~~~~ 161 (348)
.|+++|++||||||.+-+|. +.++..++..... . ....... ...+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 69999999999999998764 3333332211110 0 0000000 0123
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+..+.++||||........+.. + ..+.... ..+-+++|++++.+..... .+...... .+ +-=+++||.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~e-l-~~~~~~~-~~~~~~LVlsa~~~~~~~~-~~~~~~~~--~~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEE-L-KKLLEAL-NPDEVHLVLSATMGQEDLE-QALAFYEA--FG-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHH-H-HHHHHHH-SSSEEEEEEEGGGGGHHHH-HHHHHHHH--SS-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHH-H-HHHhhhc-CCccceEEEecccChHHHH-HHHHHhhc--cc-CceEEEEeecCCC
Confidence 4679999999965433222221 1 2222323 6778999999987665544 33333332 12 2356799999864
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.6e-05 Score=66.59 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=41.5
Q ss_pred cEEEEEecCCCCCchHHHHHHHh--cccccCCCCEEEEEeccCCCChhhHHHHHHHHHhc
Q 018949 197 DCIVVLVDACKAPERIDEILEEG--VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF 254 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~--~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~ 254 (348)
|++++|+|+..+.......+.+. +.. .++|+|+|+||+|+.+...+......+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~--~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAG--GNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhcc--CCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 78999999988765544555555 333 568999999999998877766666666554
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.6e-05 Score=63.36 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=34.5
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
++.+.++||||..... ...+..||.+++|+...-.... . +.+. .. ...--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~------------~~~~~~Ad~~ivv~tpe~~D~y--~-~~k~-~~--~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE------------VDIASMADTTVVVMAPGAGDDI--Q-AIKA-GI--MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh------------hhHHHhCCEEEEEECCCchhHH--H-Hhhh-hH--hhhcCEEEEeCCC
Confidence 5679999999964321 1235788999998877622111 1 1111 01 2233488999998
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00012 Score=72.35 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=74.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC--------CceeeecCCCCce-----------EE--eEEEEE----------eCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT-----------RH--RILGIC----------SGPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~--------~~~~~~~~~~~~t-----------~~--~~~~~~----------~~~~ 162 (348)
+...|+|+|++|+||||++..|.. .++..++..+... .. ...... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 345899999999999999988753 2233222211100 00 001000 1235
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
+.++|+||||.......... .+ ...... . ....++|++++.........+..+ . ...+.-+|+||+|....
T Consensus 429 ~DLVLIDTaG~s~~D~~l~e-eL-~~L~aa-~-~~a~lLVLpAtss~~Dl~eii~~f-~---~~~~~gvILTKlDEt~~- 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAA-QL-NWLRAA-R-QVTSLLVLPANAHFSDLDEVVRRF-A---HAKPQGVVLTKLDETGR- 499 (559)
T ss_pred CCEEEecCCCcchhhHHHHH-HH-HHHHHh-h-cCCcEEEEECCCChhHHHHHHHHH-H---hhCCeEEEEecCcCccc-
Confidence 67999999997542211111 11 112111 1 234677788876555544443332 2 22467799999997532
Q ss_pred hHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 243 ~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.-..+....... .|+..++ +|+++
T Consensus 500 -lG~aLsv~~~~~--LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 -FGSALSVVVDHQ--MPITWVT--DGQRV 523 (559)
T ss_pred -hhHHHHHHHHhC--CCEEEEe--CCCCc
Confidence 223333333322 2555554 55655
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00029 Score=59.92 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=41.3
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+..+.++||||........+... ..... ....|.+++|+|+...... ........+. .+ ..-+|+||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l--~~l~~-~~~~~~~~lVv~~~~~~~~-~~~~~~~~~~--~~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEEL--KKIKR-VVKPDEVLLVVDAMTGQDA-VNQAKAFNEA--LG-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHH--HHHHh-hcCCCeEEEEEECCCChHH-HHHHHHHHhh--CC-CCEEEEECCcCCCC
Confidence 45689999999643211122111 11111 2358999999999654332 2334433333 22 35678899998653
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.6e-05 Score=73.29 Aligned_cols=119 Identities=19% Similarity=0.251 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCc--------e-----EEeEEEE------------Ee-CCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT--------T-----RHRILGI------------CS-GPE 162 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~--------t-----~~~~~~~------------~~-~~~ 162 (348)
+..|+++|++|+||||++..|.. .++..++..+.. + ....... .. ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 45899999999999999999852 223322222110 0 0000000 01 113
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
..++|+||||........+... ..+.. ....+.+++|+|++.........+. .+.. . ..-=+++||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL--~~~lk-~~~PdevlLVLsATtk~~d~~~i~~-~F~~--~-~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEM--IETMG-QVEPDYICLTLSASMKSKDMIEIIT-NFKD--I-HIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHH--HHHHh-hcCCCeEEEEECCccChHHHHHHHH-HhcC--C-CCCEEEEEcccCCC
Confidence 6799999999644322222221 11111 1345778999998765544443333 2222 1 22357899999764
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.85 E-value=8.2e-05 Score=66.66 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=76.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee---cCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhh-----hhhh----H
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---TNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKK-----IHML----D 182 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~---~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~-----~~~l----~ 182 (348)
.|..+|.+|.|||||++.|.+.++... ...|..........+. .-...+.++||.|+++.- +..+ .
T Consensus 44 NilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyid 123 (406)
T KOG3859|consen 44 NILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYID 123 (406)
T ss_pred EEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHH
Confidence 799999999999999999998876521 1111111111111111 113568999999997631 1111 1
Q ss_pred H----HH-----HHHHHhhc--cCccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH
Q 018949 183 S----MM-----MKNVRSAG--INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (348)
Q Consensus 183 ~----~~-----~~~~~~~~--~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 248 (348)
. .+ .++.+..+ .+.++|+|.+..+. +....+......+. .++.+|-|+-|.|.....++..+.
T Consensus 124 aQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld---skVNIIPvIAKaDtisK~eL~~FK 198 (406)
T KOG3859|consen 124 AQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD---SKVNIIPVIAKADTISKEELKRFK 198 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh---hhhhhHHHHHHhhhhhHHHHHHHH
Confidence 1 11 11222223 35688999888764 44555554444433 457788888999998877665443
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.1e-05 Score=81.82 Aligned_cols=123 Identities=24% Similarity=0.252 Sum_probs=71.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh------hhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK------KIHM 180 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~------~~~~ 180 (348)
.-|=.+|+|++|+||||+++.- |-.+.... ...+.|++ +.-.+. ..-+++||+|-.-. ....
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~---~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFT---DEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEec---CCEEEEcCCCccccCCCcccccHH
Confidence 3346899999999999999986 44432211 01112222 111122 23679999994211 1112
Q ss_pred hHHHHHHHHHhh--ccCccEEEEEecCCCCCc-----------hHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 181 LDSMMMKNVRSA--GINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 181 l~~~~~~~~~~~--~~~ad~iv~VvD~~~~~~-----------~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
....+.....++ -.-.++||+++|+.+-.. .....+.++...++...|+.||+||+|+...
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 233344444333 245799999999864321 1122233344445678999999999998753
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.3e-05 Score=71.42 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc--------eeeecCCC---Cce----------EEeEEEE----------EeCCCe
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKP---QTT----------RHRILGI----------CSGPEY 163 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~--------~~~~~~~~---~~t----------~~~~~~~----------~~~~~~ 163 (348)
...|++||++||||||.+-.|...- +++++... |.- ..+...+ .....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 5589999999999999998764221 22211110 000 0001111 112345
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEeccCCCC
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIK 240 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl~~ 240 (348)
.++|+||.|..+. +.....-++.+.... ...-+.+|++++.....+.+.+..+ +. .|+ =+++||.|-..
T Consensus 283 d~ILVDTaGrs~~--D~~~i~el~~~~~~~-~~i~~~Lvlsat~K~~dlkei~~~f-~~----~~i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQY--DKEKIEELKELIDVS-HSIEVYLVLSATTKYEDLKEIIKQF-SL----FPIDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCcc--CHHHHHHHHHHHhcc-ccceEEEEEecCcchHHHHHHHHHh-cc----CCcceeEEEcccccC
Confidence 7999999995432 222222223333333 2334566777776555554444333 22 232 46789999653
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00026 Score=67.24 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=63.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCce-------------EEeEEEEEe-------------CC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-------------RHRILGICS-------------GP 161 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~t-------------~~~~~~~~~-------------~~ 161 (348)
+...|+++|++|+||||++..+.. .++..++..+... ........+ ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 344799999999999999998752 2333332222111 001111100 13
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
++.++++||||..+.....+... ..... ....+.+++|++++.........+. .... --+--+|+||.|-..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL--~~l~~-~~~p~~~~LVLsag~~~~d~~~i~~-~f~~---l~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEI--SAYTD-VVHPDLTCFTFSSGMKSADVMTILP-KLAE---IPIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHH--HHHhh-ccCCceEEEECCCcccHHHHHHHHH-hcCc---CCCCEEEEEcccCCC
Confidence 46899999999644222222211 11212 1245777888887544433333222 2222 123367899999764
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00033 Score=67.23 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=65.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC----------CceeeecCCCCc-----------e--EEeEEEE----------EeC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG----------QKLSIVTNKPQT-----------T--RHRILGI----------CSG 160 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~----------~~~~~~~~~~~~-----------t--~~~~~~~----------~~~ 160 (348)
++..|+++|++|+||||++..+.. .++..++..+.. . ....... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 345899999999999999988752 223322222110 0 0011111 012
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.++.+.++||+|..+.....+.. + ..+........-+++|+|++.+.....+.+.... . --+-=+++||.|-..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~e-l-~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~---~~~~~~I~TKlDet~ 326 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAE-M-KELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-P---FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHH-H-HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-C---CCCCEEEEEeccCCC
Confidence 45689999999964321111111 1 1222222222358899999887665554443332 1 123357899999754
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00017 Score=69.36 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC-------ceeeecCCCCce-----------E--EeEEEE---------EeCCCeeE
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ-------KLSIVTNKPQTT-----------R--HRILGI---------CSGPEYQM 165 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~-------~~~~~~~~~~~t-----------~--~~~~~~---------~~~~~~~~ 165 (348)
...++++|++||||||++..|... ++..++..+..+ . ...... +...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 346999999999999999988632 222222111000 0 000000 11235679
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhcc--CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~--~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.++||||..+.....+... ..+..... ...-+++|+|++.+........... ... -+-=+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL--~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~~---~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERM--QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ESL---NYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHH--HHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cCC---CCCEEEEEcccCCC
Confidence 9999999754322222221 22222221 2446889999987765554443332 321 23357899999754
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00019 Score=70.66 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=72.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC--------ceeeecCCCC-ce----------EE--eEEE----------EEeCCCe
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQ-TT----------RH--RILG----------ICSGPEY 163 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~--------~~~~~~~~~~-~t----------~~--~~~~----------~~~~~~~ 163 (348)
...++++|++||||||++..|.+. ++..+...+. .+ .. .... .....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 347999999999999999987632 2222221111 00 00 0000 0112345
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
.+.++||+|..+... .+... .... .......-.++|+|++.......+....+ .. ...--+|+||.|-...
T Consensus 336 d~VLIDTaGr~~~d~-~~~e~-~~~l-~~~~~p~e~~LVLdAt~~~~~l~~i~~~f-~~---~~~~g~IlTKlDet~~-- 406 (484)
T PRK06995 336 HIVLIDTIGMSQRDR-MVSEQ-IAML-HGAGAPVKRLLLLNATSHGDTLNEVVQAY-RG---PGLAGCILTKLDEAAS-- 406 (484)
T ss_pred CeEEeCCCCcChhhH-HHHHH-HHHH-hccCCCCeeEEEEeCCCcHHHHHHHHHHh-cc---CCCCEEEEeCCCCccc--
Confidence 689999999644221 11111 1111 11111233788999976654443333222 22 2234577899996532
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCCCH-HHH
Q 018949 244 IAKKLEWYEKFTDVDEVIPVSAKYGHGV-EDI 274 (348)
Q Consensus 244 ~~~~~~~~~~~~~~~~i~~vSA~~g~gi-~eL 274 (348)
.-..+...... + .|+..++ +|++| ++|
T Consensus 407 ~G~~l~i~~~~-~-lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 407 LGGALDVVIRY-K-LPLHYVS--NGQRVPEDL 434 (484)
T ss_pred chHHHHHHHHH-C-CCeEEEe--cCCCChhhh
Confidence 11222222222 1 2555554 67777 554
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=71.08 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=63.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC--------ceeeecCCC----------------CceEEeEEE-------EEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKP----------------QTTRHRILG-------ICSGPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~--------~~~~~~~~~----------------~~t~~~~~~-------~~~~~~ 162 (348)
+..+|+++|++|+||||++..|.+. +...+.... +........ .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 4458999999999999999987642 111111000 000000000 011234
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
..+.++||+|..+.... +...+ ..+ .......-.++|+|++.........+..+ .. . -.-=+++||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~-~~~~l-~~l-~~~~~~~~~~LVl~at~~~~~~~~~~~~f-~~--~-~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQM-LAEQI-AML-SQCGTQVKHLLLLNATSSGDTLDEVISAY-QG--H-GIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHH-HHHHH-HHH-hccCCCceEEEEEcCCCCHHHHHHHHHHh-cC--C-CCCEEEEEeeeCCC
Confidence 56899999996542211 11111 111 11223456789999987665554443332 22 1 22357899999764
|
|
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00053 Score=64.39 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=47.8
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCch-----HH-------HHHHHhccc-c
Q 018949 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-----ID-------EILEEGVGD-H 223 (348)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~-----~~-------~~~~~~~~~-~ 223 (348)
.+..++..+.++|.+|...+ +..+...+.++++||||++.+.-.+. .. ..+...+.. .
T Consensus 189 ~F~~k~~~f~~~DvGGQRse---------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSE---------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred EEEeCCCceEEEeCCCcHHH---------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 35566778999999994322 23455568999999999998753211 01 111112211 1
Q ss_pred cCCCCEEEEEeccCCC
Q 018949 224 KDKLPILLVLNKKDLI 239 (348)
Q Consensus 224 ~~~~p~ivv~NK~Dl~ 239 (348)
..+.++|+++||.|+-
T Consensus 260 F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLF 275 (354)
T ss_pred cccCcEEEEeecHHHH
Confidence 2678999999999985
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.002 Score=54.84 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhhccCccEEEEEec---CCCCCchH-HHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVD---ACKAPERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD---~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
+...........+..+++ +++| ........ ...+...+ . .+.|++++.||.... .....+....+
T Consensus 82 le~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~------~~~~~i~~~~~ 150 (174)
T PRK13695 82 LERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVH------PFVQEIKSRPG 150 (174)
T ss_pred HHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhH------HHHHHHhccCC
Confidence 344444555556678887 5777 33222222 22233333 3 678999999985321 12233333333
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
. .++.+ +.+|=+++...|.+.++
T Consensus 151 ~-~i~~~---~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 151 G-RVYEL---TPENRDSLPFEILNRLK 173 (174)
T ss_pred c-EEEEE---cchhhhhHHHHHHHHHh
Confidence 2 45555 56666788888777553
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=70.55 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhC--------CceeeecCCCCce-------------EEeEEEE----------EeCCCee
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT-------------RHRILGI----------CSGPEYQ 164 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~--------~~~~~~~~~~~~t-------------~~~~~~~----------~~~~~~~ 164 (348)
..++|+|++||||||++..|.. .++..++..+... ....... -...+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 4799999999999998877632 2233332222100 0000000 0123467
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
++++||||........+.. + ..+........-+++|++++.........+.. +.. .+ +--+++||.|-..
T Consensus 302 lVlIDt~G~~~~d~~~~~~-L-~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~-f~~--~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEE-L-KALIEFSGEPIDVYLVLSATTKYEDLKDIYKH-FSR--LP-LDGLIFTKLDETS 371 (424)
T ss_pred EEEEeCCCCCCCCHHHHHH-H-HHHHhccCCCCeEEEEEECCCCHHHHHHHHHH-hCC--CC-CCEEEEecccccc
Confidence 9999999964432222211 1 12222122345677888887655554443332 222 11 2258899999754
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.2e-05 Score=66.96 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=40.3
Q ss_pred eEEEEeCCCCchh--hhhhhHHHHHHHHHhhccCccEEEEEecCC---CCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 164 QMILYDTPGIIEK--KIHMLDSMMMKNVRSAGINADCIVVLVDAC---KAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 164 ~~~l~DtpG~~~~--~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
.+.++|+||.++- ....+...+. ...+ ..-.-++|.++|+- ++..-....+..+.-......|-|=|+.|+|+
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~-~Lek-~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFR-KLEK-LDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHH-HHHH-cCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 5899999997652 2234444332 2222 33334566677762 22222222222222222256889999999998
Q ss_pred CC
Q 018949 239 IK 240 (348)
Q Consensus 239 ~~ 240 (348)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 64
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00051 Score=67.03 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=62.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce-------------EEeEEEEE--------------eC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGIC--------------SG 160 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t-------------~~~~~~~~--------------~~ 160 (348)
++..|+++|.+|+||||++..|. |.++..++..+... ........ ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 34589999999999999998874 22333222211100 00000000 01
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~ 239 (348)
....++++||||..+.....+.. + ... .....+|.+++|+|++.+. ........ +. ...+ .-+|+||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~E-l-~~l-~~~~~pdevlLVvda~~gq-~av~~a~~-F~---~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEE-M-KEI-KEAVKPDEVLLVIDATIGQ-QAKNQAKA-FH---EAVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHH-H-HHH-HHHhcccceeEEEeccccH-HHHHHHHH-HH---hcCCCCEEEEecccCC
Confidence 22479999999964422221111 1 111 2234688999999997763 22222222 11 2233 35788999975
Q ss_pred C
Q 018949 240 K 240 (348)
Q Consensus 240 ~ 240 (348)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 3
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=54.48 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=56.7
Q ss_pred EEcCCCCChHHHHHHHh------CCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 120 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.-|.+|+||||+.-.+. |.....+...+..+.. .+.+.++|||+..... ....+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---------~yd~VIiD~p~~~~~~-----------~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---------DYDYIIIDTGAGISDN-----------VLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---------CCCEEEEECCCCCCHH-----------HHHHH
Confidence 34579999999877654 2222222222111111 1669999999843211 22346
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
..+|.+++|++.+...-.......+.+.......++.+|+|+++..
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 7899999999986443222122222322222456788999999743
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00031 Score=61.83 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=35.0
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCC-CCEEEEEeccCCC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLI 239 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~NK~Dl~ 239 (348)
.+.+|++|.|+|.+...-...+.+.++..+ .+ .++.+|+||+|-.
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~e--lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEE--LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHHHHHHHHHHH--hCCceEEEEEeeccch
Confidence 578999999999986554445566666666 45 8899999999965
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0054 Score=51.07 Aligned_cols=148 Identities=21% Similarity=0.242 Sum_probs=76.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhC---Cc-eeeecCCCCceEEeEEEEEe--CCCeeEEEEeCC-C------------Cchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG---QK-LSIVTNKPQTTRHRILGICS--GPEYQMILYDTP-G------------IIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~---~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~Dtp-G------------~~~~ 176 (348)
.+|+|.|+||+||||++.++.. .+ +... -.....+. .....|.++|+. | ..-.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg--------Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVG--------GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceee--------eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccc
Confidence 3899999999999999998752 11 1110 00000011 111224444443 1 0000
Q ss_pred ----hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHH
Q 018949 177 ----KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWY 251 (348)
Q Consensus 177 ----~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~ 251 (348)
.-..++........+++..||++| +|=-.+.+-....+.+.+.. +..++|+|.++-+-+.- ...+.+
T Consensus 78 kY~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~------P~v~~i 149 (179)
T COG1618 78 KYGVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH------PLVQRI 149 (179)
T ss_pred eEEeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC------hHHHHh
Confidence 112345556666777788889765 45433322222222222222 12578988888876642 123334
Q ss_pred HhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 252 EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 252 ~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+...+. +++ .+.+|=+.++..|...+..
T Consensus 150 k~~~~v--~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 150 KKLGGV--YVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred hhcCCE--EEE---EccchhhHHHHHHHHHhcc
Confidence 433332 222 5667777888888776643
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00096 Score=63.30 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=50.0
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC------------chHHHHHHHhccc-
Q 018949 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD- 222 (348)
Q Consensus 156 ~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~------------~~~~~~~~~~~~~- 222 (348)
..+..++..+.+||.+|. ...+ ..+..++..+++|+||+|.++-. .+....+..++..
T Consensus 177 ~~f~~~~~~~~~~DvgGq--r~~R-------~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 177 TAFIVKKLFFRMFDVGGQ--RSER-------KKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred EEEEECCeEEEEEecCCc--hhhh-------hhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 345566788999999994 2222 34556689999999999998531 1112223333322
Q ss_pred ccCCCCEEEEEeccCCC
Q 018949 223 HKDKLPILLVLNKKDLI 239 (348)
Q Consensus 223 ~~~~~p~ivv~NK~Dl~ 239 (348)
...+.|++|++||.|+.
T Consensus 248 ~~~~~piil~~NK~D~~ 264 (342)
T smart00275 248 WFANTSIILFLNKIDLF 264 (342)
T ss_pred cccCCcEEEEEecHHhH
Confidence 12679999999999985
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.001 Score=60.84 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC------ceeeecCCCCc--------e-----EEeEEEEE-------------eCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T-----RHRILGIC-------------SGPE 162 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~------~~~~~~~~~~~--------t-----~~~~~~~~-------------~~~~ 162 (348)
..+++++|++|+||||++..+.+. ....++..+.. + ........ ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 348999999999999999887532 22222211110 0 00000000 1125
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
..+.++||||..+.....+... . .... ....+-+++|+|++.........+..+ .. -.+-=+++||.|-..
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el-~-~~~~-~~~~~~~~LVl~a~~~~~d~~~~~~~f-~~---~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEM-I-ETMG-QVEPDYICLTLSASMKSKDMIEIITNF-KD---IHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHH-H-HHHh-hhCCCeEEEEEcCccCHHHHHHHHHHh-CC---CCCCEEEEEeecCCC
Confidence 6899999999654222222221 1 1222 235567899999976655544443333 22 123457899999764
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00049 Score=60.63 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=68.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee----ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
++|.++|..-+||||+-.....+--.. ...+...|++. +...-..+.+||.||..+.-.....- ..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s~D~------e~ 97 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPSFDY------EM 97 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCccCH------HH
Confidence 369999999999999987665432110 11111122221 12233569999999965422122211 12
Q ss_pred hccCccEEEEEecCCCCCchHHHHHH-Hhccc--ccCCCCEEEEEeccCCCCh
Q 018949 192 AGINADCIVVLVDACKAPERIDEILE-EGVGD--HKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~-~~~~~--~~~~~p~ivv~NK~Dl~~~ 241 (348)
.++.+-+++||+|+.+...+....+. -..+. ..+++.+=|.+.|.|-...
T Consensus 98 iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 98 IFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred HHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 25788999999999765433222222 22222 2367888899999998754
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00058 Score=64.31 Aligned_cols=75 Identities=23% Similarity=0.216 Sum_probs=55.1
Q ss_pred HHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC
Q 018949 183 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (348)
Q Consensus 183 ~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (348)
..+...++..+..+|+||.|+|+.++...-...+.+.......++..|+|+||+|+++.+.++..+..++...+.
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~pt 208 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPT 208 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCc
Confidence 345566777789999999999999877333333333332222458899999999999999888888888876654
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00039 Score=47.34 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=25.7
Q ss_pred ccCccEEEEEecCCCCC----chHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 193 GINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
.+-.++|+|++|.+... +.+. .+...++....++|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~-~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQL-SLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHH-HHHHHHHHHTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHH-HHHHHHHHHcCCCCEEEEEeccC
Confidence 45678999999998654 2222 33344444436899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0023 Score=62.39 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=38.5
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
.++.++++||||..+.....+ ..+ ..+.. .-.+|-+++|+|++.+. ............ -+ ..=+|+||.|..
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~-~eL-~~i~~-~~~p~e~lLVvda~tgq-~~~~~a~~f~~~--v~-i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELM-EEL-AAIKE-ILNPDEILLVVDAMTGQ-DAVNTAKTFNER--LG-LTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHH-HHH-HHHHH-hhCCceEEEEEeccchH-HHHHHHHHHHhh--CC-CCEEEEeCccCc
Confidence 346799999999543221111 111 11222 23578899999997543 222222222211 11 235779999964
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00042 Score=71.46 Aligned_cols=122 Identities=15% Similarity=0.226 Sum_probs=63.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC--------ceeeecCCCCc---e--------EE--eEEEE----------EeCCCe
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQT---T--------RH--RILGI----------CSGPEY 163 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~--------~~~~~~~~~~~---t--------~~--~~~~~----------~~~~~~ 163 (348)
...|+++|++||||||++..|.+. ++..++..... . .. ..... -...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 347999999999999999988642 22221111100 0 00 00000 012345
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.++|+||||..+.... +.... .... .....+-+++|+|++.......+.+..+......+ +-=+|+||.|-..
T Consensus 265 D~VLIDTAGRs~~d~~-l~eel-~~l~-~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~ 337 (767)
T PRK14723 265 HLVLIDTVGMSQRDRN-VSEQI-AMLC-GVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGED-VDGCIITKLDEAT 337 (767)
T ss_pred CEEEEeCCCCCccCHH-HHHHH-HHHh-ccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCC-CCEEEEeccCCCC
Confidence 7999999996442212 21211 1111 12346678999999865444333332221110011 2357899999764
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0017 Score=50.71 Aligned_cols=95 Identities=24% Similarity=0.243 Sum_probs=54.3
Q ss_pred EEEEc-CCCCChHHHHHHHh-------CCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 118 VAVLG-KPNVGKSTLANQMI-------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 118 v~i~G-~~~~GKSsLin~l~-------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
|+++| ..|+||||+.-.|. |.+...+...+..+ ..+.++|||+..... .
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~------------~D~IIiDtpp~~~~~-----------~ 58 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG------------DDYVVVDLGRSLDEV-----------S 58 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC------------CCEEEEeCCCCcCHH-----------H
Confidence 44544 68999999776653 22332222222211 158999999854311 2
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhccccc-C-CCCEEEEEec
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-D-KLPILLVLNK 235 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~-~-~~p~ivv~NK 235 (348)
...+..+|.++++++.+.........+.+.++..+ . ...+.+|+|+
T Consensus 59 ~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 23357889999999886544333333344333322 2 3567788886
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0019 Score=62.89 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHh-------CCceeeecCCCCce-----------EE--eEEEE----------------E
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTT-----------RH--RILGI----------------C 158 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~-------~~~~~~~~~~~~~t-----------~~--~~~~~----------------~ 158 (348)
+..|+++|.+|+||||++-.|. |.++..++..+... .. ..... .
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 4479999999999999776653 33343332221110 00 00000 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
...++.++++||||..+.....+ ..+ ..+.. .-..+-+++|+|++.+ +............ .+ ..-+|+||.|.
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm-~eL-~~i~~-~v~p~evllVlda~~g-q~av~~a~~F~~~--~~-i~giIlTKlD~ 252 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELM-DEL-KAIKA-AVNPDEILLVVDAMTG-QDAVNTAKAFNEA--LG-LTGVILTKLDG 252 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHH-HHH-HHHHH-hhCCCeEEEEEecccH-HHHHHHHHHHHhh--CC-CCEEEEeCccC
Confidence 12346799999999543221111 111 11212 2356778999998754 2222222222211 11 23578899996
Q ss_pred C
Q 018949 239 I 239 (348)
Q Consensus 239 ~ 239 (348)
.
T Consensus 253 ~ 253 (433)
T PRK10867 253 D 253 (433)
T ss_pred c
Confidence 4
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00073 Score=65.54 Aligned_cols=81 Identities=22% Similarity=0.204 Sum_probs=61.0
Q ss_pred HHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEec
Q 018949 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 185 ~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (348)
+.++.++.++.+|+||.+||+.++.-.....+..+.+.....+..++++||.||..+.........+.... .++++.|
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~n--i~~vf~S 241 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNN--IPVVFFS 241 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcC--ceEEEEe
Confidence 45566677899999999999998874433445555555445678899999999999887776666665544 5888889
Q ss_pred CCC
Q 018949 265 AKY 267 (348)
Q Consensus 265 A~~ 267 (348)
|..
T Consensus 242 A~~ 244 (562)
T KOG1424|consen 242 ALA 244 (562)
T ss_pred ccc
Confidence 877
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00062 Score=63.06 Aligned_cols=149 Identities=21% Similarity=0.285 Sum_probs=77.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh------CCceeeecCCC----------------Cce-------EEeEEEE------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP----------------QTT-------RHRILGI------ 157 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~----------------~~t-------~~~~~~~------ 157 (348)
.++..|+++|-.|+||||.|-.|. |.++....... +.. .++....
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 345689999999999999998874 22222111111 000 0000000
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccE-----EEEEecCCCCCchH--HHHHHHhcccccCCCCEE
Q 018949 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC-----IVVLVDACKAPERI--DEILEEGVGDHKDKLPIL 230 (348)
Q Consensus 158 ~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~-----iv~VvD~~~~~~~~--~~~~~~~~~~~~~~~p~i 230 (348)
-...++.+.|+||+|-.+...+-+.. + +...+.+...+. +++|+|++.+.... .+.+.+...- -=
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~E-L-~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l------~G 288 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDE-L-KKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL------DG 288 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHH-H-HHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC------ce
Confidence 11234679999999965544333322 2 223333344333 88888998876432 2333332221 14
Q ss_pred EEEeccCCCChh-hHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 231 LVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 231 vv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
+++||+|-...- -+-.+... .+ .|+.++. -|+++++|..
T Consensus 289 iIlTKlDgtAKGG~il~I~~~----l~-~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 289 IILTKLDGTAKGGIILSIAYE----LG-IPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred EEEEecccCCCcceeeeHHHH----hC-CCEEEEe--CCCChhhccc
Confidence 789999954321 11111111 22 2666664 5778887753
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00031 Score=66.98 Aligned_cols=56 Identities=41% Similarity=0.565 Sum_probs=35.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-------CCCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
+++++|.+|+|||||+|.+++....... ....+|.......+..+ ..++||||+..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~---~~l~DtpG~~~ 259 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG---GLLIDTPGMRE 259 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC---CeecCCCchhh
Confidence 7999999999999999999975432111 11123333322333222 35889999743
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0024 Score=60.09 Aligned_cols=86 Identities=31% Similarity=0.331 Sum_probs=64.9
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.....+.+..+|+|+.|+|+..+.......+..... +.|.++|+||+|+.+..........+....+. ..+.+|+
T Consensus 25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~-~~~~v~~ 99 (322)
T COG1161 25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGI-KPIFVSA 99 (322)
T ss_pred HHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCC-ccEEEEe
Confidence 345566689999999999999887665555555554 35669999999999988777777777766543 4588888
Q ss_pred CCCCCHHHHHH
Q 018949 266 KYGHGVEDIRD 276 (348)
Q Consensus 266 ~~g~gi~eL~~ 276 (348)
+.+.+...+..
T Consensus 100 ~~~~~~~~i~~ 110 (322)
T COG1161 100 KSRQGGKKIRK 110 (322)
T ss_pred ecccCccchHH
Confidence 88887777773
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0044 Score=47.79 Aligned_cols=66 Identities=29% Similarity=0.438 Sum_probs=41.8
Q ss_pred EEEEc-CCCCChHHHHHHHhC------CceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 118 VAVLG-KPNVGKSTLANQMIG------QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 118 v~i~G-~~~~GKSsLin~l~~------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
|+++| ..|+||||+...+.. .+...+...+ .+.+.++|+|+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~--------------~~d~viiD~p~~~~~~-----------~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDP--------------QYDYIIIDTPPSLGLL-----------TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCC--------------CCCEEEEeCcCCCCHH-----------HH
Confidence 56777 689999998876543 1222111111 1569999999853311 12
Q ss_pred hhccCccEEEEEecCCCC
Q 018949 191 SAGINADCIVVLVDACKA 208 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~ 208 (348)
..+..+|.++++++.+..
T Consensus 57 ~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 57 NALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHCCEEEEeccCCHH
Confidence 335789999999988643
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0039 Score=57.29 Aligned_cols=85 Identities=27% Similarity=0.318 Sum_probs=57.1
Q ss_pred cCccEEEEEecCCCCCch--HHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH--HHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK--KLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
.+.|-+++|+.+..+.-. ....++-.+.. .++.-+||+||+|+.+..+... ....+.. .+ .+++.+|++++.
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~-~g-y~v~~~s~~~~~ 153 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYED-IG-YPVLFVSAKNGD 153 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHh-CC-eeEEEecCcCcc
Confidence 456777777777766522 22233333333 6777788899999998766542 2333332 33 378999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++|...+...+
T Consensus 154 ~~~~l~~~l~~~~ 166 (301)
T COG1162 154 GLEELAELLAGKI 166 (301)
T ss_pred cHHHHHHHhcCCe
Confidence 9999999887654
|
|
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.014 Score=49.50 Aligned_cols=111 Identities=20% Similarity=0.168 Sum_probs=59.7
Q ss_pred EEEE-cCCCCChHHHHHHHh------CCceeeecCCCC-ceEEeEE--------EEEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 118 VAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQ-TTRHRIL--------GICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 118 v~i~-G~~~~GKSsLin~l~------~~~~~~~~~~~~-~t~~~~~--------~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
|+++ +.+|+||||+.-.|. |.+...+...+. ....... ...+.-...+.++|||+-....
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~~---- 77 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIERG---- 77 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcHH----
Confidence 3444 479999999987753 344433322221 1111000 0000001169999999843211
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
....+..+|.+|++++.+.........+.+.++.. ......+|+|++|...
T Consensus 78 -------~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 78 -------FITAIAPADEALLVTTPEISSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred -------HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHc-CCceEEEEEeCCcccc
Confidence 22335689999999988754433333344444431 2234678999998654
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0044 Score=58.45 Aligned_cols=96 Identities=19% Similarity=0.123 Sum_probs=66.6
Q ss_pred HHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEe
Q 018949 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 184 ~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~v 263 (348)
.........+..+|++|.|+|+.++.-.....+..+++...+.+.+|+|+||+||++..........+.+..+-. .|.-
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTi-AfHA 280 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTI-AFHA 280 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcce-eeeh
Confidence 345566677889999999999998875555666677776667788999999999998766555666655544321 2444
Q ss_pred cCCCCCCHHHHHHHHHH
Q 018949 264 SAKYGHGVEDIRDWILT 280 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~ 280 (348)
|-....|-..|++.+..
T Consensus 281 si~nsfGKgalI~llRQ 297 (572)
T KOG2423|consen 281 SINNSFGKGALIQLLRQ 297 (572)
T ss_pred hhcCccchhHHHHHHHH
Confidence 54445565666665544
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0012 Score=70.82 Aligned_cols=119 Identities=22% Similarity=0.266 Sum_probs=65.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhhH----H
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLD----S 183 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~----~ 183 (348)
=-+|+|++|+||||++.. +|.++... ...++ |+++.- +-+..-+++||.|-.... ..... .
T Consensus 127 Wy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdw----wf~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDW----WFTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred ceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCc----ccccceEEEcCCcceecccCcchhhHHHHH
Confidence 478899999999999874 23322211 11222 333221 112347899999942211 11111 1
Q ss_pred HHHHHHH--hhccCccEEEEEecCCCCC----chH-------HHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 184 MMMKNVR--SAGINADCIVVLVDACKAP----ERI-------DEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 184 ~~~~~~~--~~~~~ad~iv~VvD~~~~~----~~~-------~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
.+....+ +..+-.++||+.+|+.+-. ... ...+.++...+....|++|++||.|+...
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 1222222 2245679999999986432 111 11122333334468999999999999864
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0074 Score=45.17 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=44.0
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCcc
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad 197 (348)
+++.|.+|+||||+...+...-.. .+... ..++ .+.++|+||........ .......+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v----~~~~----d~iivD~~~~~~~~~~~--------~~~~~~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRV----LLID----DYVLIDTPPGLGLLVLL--------CLLALLAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeE----EEEC----CEEEEeCCCCccchhhh--------hhhhhhhCC
Confidence 678899999999999887643110 01000 0111 58999999954322100 123356889
Q ss_pred EEEEEecCCCCC
Q 018949 198 CIVVLVDACKAP 209 (348)
Q Consensus 198 ~iv~VvD~~~~~ 209 (348)
.++++++.....
T Consensus 61 ~vi~v~~~~~~~ 72 (99)
T cd01983 61 LVIIVTTPEALA 72 (99)
T ss_pred EEEEecCCchhh
Confidence 999999887544
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.007 Score=57.02 Aligned_cols=92 Identities=23% Similarity=0.361 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCC-------------ceEEeEEEE----------------Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-------------TTRHRILGI----------------CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~-------------~t~~~~~~~----------------~~ 159 (348)
+-.|.++|--|+||||.+-.+. |.+...+..... .++.++.+. +.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 3379999999999999998874 223222211110 111122211 22
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~ 209 (348)
.+++.++++||.|-++.. .++-..+.+ +.+ .-..|-+|||+|++-+.
T Consensus 181 ke~fdvIIvDTSGRh~qe-~sLfeEM~~-v~~-ai~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQE-ASLFEEMKQ-VSK-AIKPDEIIFVMDASIGQ 227 (483)
T ss_pred hcCCcEEEEeCCCchhhh-HHHHHHHHH-HHh-hcCCCeEEEEEeccccH
Confidence 345689999999954322 222222222 222 24689999999998765
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0035 Score=61.28 Aligned_cols=151 Identities=15% Similarity=0.208 Sum_probs=90.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+++|+|..++|||+|+.+++...+.. ...|...++....++.....-+.+-|-.|..+. .+..-
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~-~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a--------------Qft~w 95 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQ-DESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA--------------QFCQW 95 (749)
T ss_pred hheeeeecccCCceeeeeeeccceecc-ccCCcCccceeeEEeeccceEeeeecccCCchh--------------hhhhh
Confidence 379999999999999999988766542 334444455555556666666777787773221 11345
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCCh----hhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP----GEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
.|++|||+...+.. +.+......+.... ...+|+++++++. .... ...+............+.+++++|.+|
T Consensus 96 vdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd-~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyG 174 (749)
T KOG0705|consen 96 VDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQD-HISAKRPRVITDDRARQLSAQMKRCSYYETCATYG 174 (749)
T ss_pred ccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcc-hhhcccccccchHHHHHHHHhcCccceeecchhhh
Confidence 67777777765433 22222222221111 1567777777753 3221 112222233333444567899999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
-++...|+.+...+
T Consensus 175 lnv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 175 LNVERVFQEVAQKI 188 (749)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998876543
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0091 Score=47.68 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|.+.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 679999999999999998764
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0018 Score=55.94 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG 156 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~ 156 (348)
.-|+|+|++|+|||||+++|+..........+.||+..-.+
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~g 45 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPG 45 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCC
Confidence 36999999999999999999876433233456667655433
|
|
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0028 Score=55.71 Aligned_cols=38 Identities=32% Similarity=0.346 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR 151 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~ 151 (348)
+...|+|+|++|+|||||++.|...........+.||+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr 49 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTR 49 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCC
Confidence 44468899999999999999997543222233344444
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0027 Score=56.55 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.|+|+|++|||||||+|.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998743
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.014 Score=53.86 Aligned_cols=111 Identities=11% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh-------------
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------------- 177 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~------------- 177 (348)
+..|.+.++|+|++|.|||++++++...+... . .+.. ...++..+.+|.-.+..
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~-d~~~-----------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-S-DEDA-----------ERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-C-CCCC-----------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 33466689999999999999999999866431 1 1111 12357777777532210
Q ss_pred ---hhhhHHHHHHHHHhhccCccEEEEEecCCCC----CchHHHHHHHhccccc--CCCCEEEEEec
Q 018949 178 ---IHMLDSMMMKNVRSAGINADCIVVLVDACKA----PERIDEILEEGVGDHK--DKLPILLVLNK 235 (348)
Q Consensus 178 ---~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~----~~~~~~~~~~~~~~~~--~~~p~ivv~NK 235 (348)
.... ......+...++.+.+=++|+|=-+. .......+++.++.++ .++|+|.|+++
T Consensus 124 ~~~~~~~-~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 124 YRPRDRV-AKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCCCCH-HHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 0011 11223344667778888888885432 2223344445444432 56888888764
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0027 Score=64.96 Aligned_cols=124 Identities=17% Similarity=0.211 Sum_probs=72.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--------------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-------------------------------------- 155 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~-------------------------------------- 155 (348)
..+.|+++|..++||||.++++.|..+.+.... ..|+-+..
T Consensus 28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g-ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG-IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred cCCceEEecCCCCcchhHHHHhhcccccccccc-ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 455899999999999999999999665431111 11111000
Q ss_pred ------------------EEEeCCCeeEEEEeCCCCchh----hhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--ch
Q 018949 156 ------------------GICSGPEYQMILYDTPGIIEK----KIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ER 211 (348)
Q Consensus 156 ------------------~~~~~~~~~~~l~DtpG~~~~----~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~ 211 (348)
.+....-..++++|.||+... ...............++.....+++.+...+.. +.
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats 186 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATS 186 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcC
Confidence 001111135889999998542 234455666677788889999988888775432 11
Q ss_pred HHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 212 IDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 212 ~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
....+...... .+...+-|++|.|+++
T Consensus 187 ~alkiarevDp--~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 187 PALVVAREVDP--GGSRTLEVITKFDFMD 213 (657)
T ss_pred HHHHHHHhhCC--CccchhHHhhhHHhhh
Confidence 11112222222 3445566667766653
|
|
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.02 Score=50.74 Aligned_cols=101 Identities=7% Similarity=0.073 Sum_probs=57.9
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC----chHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
++.+.|+||+|..... ....+..+|.||.=+-.+... .....++.+..+..+..+|.-|+.|++.
T Consensus 83 ~~d~VlvDleG~as~~-----------~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL-----------NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred CCCEEEEeCCCCCchh-----------HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 4679999999953211 112256789887755444322 1222344444444457899999999997
Q ss_pred CCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
-............+.. ..|++.+.-.......+++.
T Consensus 152 ~~~~~~~~~~~~e~~~---~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 152 AARLTRAQRIISEQLE---SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred cchhhHHHHHHHHHHh---cCCccccccccHHHHHHHHH
Confidence 4422222222222222 24778887777766666655
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0036 Score=49.62 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|+|.|.+|+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
|
... |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0041 Score=50.42 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~ 140 (348)
.++|+|++|+|||||++.+.|...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 799999999999999999999653
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.038 Score=46.69 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=58.4
Q ss_pred cCCCCChHHHHHHHh------CCceeeecCCCCc-eEEe-EE---------EE---EeCCCeeEEEEeCCCCchhhhhhh
Q 018949 122 GKPNVGKSTLANQMI------GQKLSIVTNKPQT-TRHR-IL---------GI---CSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 122 G~~~~GKSsLin~l~------~~~~~~~~~~~~~-t~~~-~~---------~~---~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+.+|+||||+.-.|. |.+...+...+.. +... .. .. ...+.+.+.++|||+.....
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~---- 82 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDE---- 82 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHH----
Confidence 578999999876653 4444433222211 1100 00 00 11246789999999843211
Q ss_pred HHHHHHHHHhh--ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEeccCC
Q 018949 182 DSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDL 238 (348)
Q Consensus 182 ~~~~~~~~~~~--~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl 238 (348)
.... +..+|.+++|+............+...++. .+.++ -+|+|+.+.
T Consensus 83 -------~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~--~~~~~~gvv~N~~~~ 133 (169)
T cd02037 83 -------HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK--VNIPILGVVENMSYF 133 (169)
T ss_pred -------HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh--cCCCeEEEEEcCCcc
Confidence 1111 257899999998865444444445555555 34554 478999885
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0026 Score=54.26 Aligned_cols=41 Identities=27% Similarity=0.369 Sum_probs=28.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC 158 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~ 158 (348)
-+++.|++||||||++++|+... ...-....||+..-.+.+
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv 46 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEV 46 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCc
Confidence 58999999999999999999776 322334445555444433
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.005 Score=42.93 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
..+|.|+.|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999865
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0043 Score=54.92 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.|+|+|++|+|||||+|.+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999998744
|
|
| >COG1341 Predicted GTPase or GTP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.028 Score=53.57 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=20.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~ 136 (348)
.+.++|+++|+.++|||||..-|.
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~La 94 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLA 94 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHH
Confidence 356699999999999999986654
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.046 Score=52.61 Aligned_cols=92 Identities=22% Similarity=0.388 Sum_probs=52.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCC----------------c-------eEEeEEE------EE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ----------------T-------TRHRILG------IC 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~----------------~-------t~~~~~~------~~ 158 (348)
.+..|.++|--|+||||.+-.|. +.++..++.... . ...+... ..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 34479999999999999988764 333332221110 0 0000000 01
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH--hhccCccEEEEEecCCCCCc
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR--SAGINADCIVVLVDACKAPE 210 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~--~~~~~ad~iv~VvD~~~~~~ 210 (348)
...++.+.++||+|-.+ ++..++.+.. ...-..|=+++|+|+..+..
T Consensus 179 k~~~~DvvIvDTAGRl~-----ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 179 KEEGYDVVIVDTAGRLH-----IDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred HHcCCCEEEEeCCCccc-----ccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 12345799999999433 2233333322 23457899999999987653
|
|
| >PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.13 Score=47.12 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=70.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCch-hhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE-KKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~-~~~~~l~~~~~~~~~~~~~~ 195 (348)
-|++.|.|++||||+.+.|...-.. .+.. ..+++.+... ++.-.+.+ ......+..+...+.+.+..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~-----~~~~----v~~i~~~~~~---~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~ 70 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE-----KGKE----VVIISDDSLG---IDRNDYADSKKEKEARGSLKSAVERALSK 70 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH-----TT------EEEE-THHHH----TTSSS--GGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-----cCCE----EEEEcccccc---cchhhhhchhhhHHHHHHHHHHHHHhhcc
Confidence 4899999999999999998753111 0000 0011111000 11111111 11123444455556666655
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC---------------hhhHHHHHHHHHhcCCC---
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK---------------PGEIAKKLEWYEKFTDV--- 257 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~---------------~~~~~~~~~~~~~~~~~--- 257 (348)
-+ |+++|...-.......+..+.+. .+.+..+|..++++.. .+-+..+...++.-...
T Consensus 71 ~~--iVI~Dd~nYiKg~RYelyclAr~--~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrW 146 (270)
T PF08433_consen 71 DT--IVILDDNNYIKGMRYELYCLARA--YGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRW 146 (270)
T ss_dssp -S--EEEE-S---SHHHHHHHHHHHHH--TT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GG
T ss_pred Ce--EEEEeCCchHHHHHHHHHHHHHH--cCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCc
Confidence 44 45689988887877788888777 7788888887777521 11223333333332221
Q ss_pred -CeEEEec-CCCCCCHHHHHHHHHHhC
Q 018949 258 -DEVIPVS-AKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 258 -~~i~~vS-A~~g~gi~eL~~~i~~~l 282 (348)
.|.|.+. .-....++++++.|...-
T Consensus 147 D~plf~i~~~~~~~~~~~I~~~l~~~~ 173 (270)
T PF08433_consen 147 DSPLFTIDSSDEELPLEEIWNALFENK 173 (270)
T ss_dssp GS-SEEEE-TTS---HHHHHHHHHHHH
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHhcC
Confidence 1445554 566667889998886543
|
The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0061 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.|+|+|++|+|||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999998854
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.038 Score=49.43 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=40.4
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCc-h---HHHHHHHhcccccCCCCEEEEEecc
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-R---IDEILEEGVGDHKDKLPILLVLNKK 236 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~-~---~~~~~~~~~~~~~~~~p~ivv~NK~ 236 (348)
+++.+.++||||... ......+..+|.+|..+..+...- . ....+....+....+.|..+++|.+
T Consensus 82 ~~yD~iiID~pp~~~-----------~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~ 150 (231)
T PRK13849 82 QGFDYALADTHGGSS-----------ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRV 150 (231)
T ss_pred CCCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEec
Confidence 457899999999532 112334678899988887754321 1 1112222222223577888999998
Q ss_pred CC
Q 018949 237 DL 238 (348)
Q Consensus 237 Dl 238 (348)
+-
T Consensus 151 ~~ 152 (231)
T PRK13849 151 PV 152 (231)
T ss_pred cc
Confidence 73
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0061 Score=49.90 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999875
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.028 Score=47.93 Aligned_cols=67 Identities=24% Similarity=0.185 Sum_probs=45.8
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+.+.+.++|||+.... .....+..+|.+++++..+.........+.+.++. .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~-----------~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~--~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----------PVIASLTGADAALLVTEPTPSGLHDLERAVELVRH--FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH-----------HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH--cCCCEEEEEeCCCCCc
Confidence 4678999999964221 12233578999999999875543333444455555 4678899999999754
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0061 Score=51.91 Aligned_cols=22 Identities=50% Similarity=0.671 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+|+|+|++|+|||||+|-+.|-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 7999999999999999998874
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.22 Score=44.92 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHHHhC
Q 018949 118 VAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~ 137 (348)
|+++|.||+||||+...|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999998863
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >TIGR01969 minD_arch cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.18 Score=45.24 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=38.2
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~ 239 (348)
.+.++++|||+-... .....+..+|.+++|++.+..............+. .+.+ +.+|+|+.+..
T Consensus 108 ~yD~VIiD~p~~~~~-----------~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~--~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLER-----------DAVTALAAADELLLVVNPEISSITDALKTKIVAEK--LGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccCH-----------HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHh--cCCceEEEEEECCCch
Confidence 357999999974321 12223567899999998864332211122233333 3445 46899999864
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. |
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.11 Score=45.33 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=37.3
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-c---hHHHHHHHhcccccCCCCE-EEEEecc
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E---RIDEILEEGVGDHKDKLPI-LLVLNKK 236 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~---~~~~~~~~~~~~~~~~~p~-ivv~NK~ 236 (348)
.+.++++||||... ......+..+|.+|+++..+... . .....+.. ......+.|. .++.|+.
T Consensus 76 ~~d~viiD~p~~~~-----------~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iv~n~~ 143 (211)
T PHA02518 76 GYDYVVVDGAPQDS-----------ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKA-RQEVTDGLPKFAFIISRA 143 (211)
T ss_pred cCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHH-HHhhCCCCceEEEEEecc
Confidence 46799999998422 11234467999999999886533 1 12122221 1111134444 5677876
Q ss_pred CCC
Q 018949 237 DLI 239 (348)
Q Consensus 237 Dl~ 239 (348)
+..
T Consensus 144 ~~~ 146 (211)
T PHA02518 144 IKN 146 (211)
T ss_pred CCc
Confidence 644
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.062 Score=43.02 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
..+.+.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999988743
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.084 Score=48.13 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=16.0
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQM 135 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l 135 (348)
+|++.|..||||||+.-.|
T Consensus 2 ~i~v~gKGGvGKTT~a~nL 20 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNL 20 (267)
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 5888899999999976654
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0073 Score=51.41 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.0053 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999854
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0088 Score=42.69 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|++.|.+|+||||+.+++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.05 Score=51.08 Aligned_cols=101 Identities=19% Similarity=0.344 Sum_probs=57.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCC--CchhhhhhhHHHHHH-HHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG--IIEKKIHMLDSMMMK-NVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG--~~~~~~~~l~~~~~~-~~~~~~ 193 (348)
=|.+.|+||+|||-|..+..+..-+ +++-..| +++. +-.-...+.+ .+.-+-
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~A------------------------tFIrvvgSElVqK-YiGEGaRlVRelF~lAr 241 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDA------------------------TFIRVVGSELVQK-YIGEGARLVRELFELAR 241 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCc------------------------eEEEeccHHHHHH-HhccchHHHHHHHHHHh
Confidence 4999999999999999987664321 1111223 2221 1111111222 222233
Q ss_pred cCccEEEEE--ecC---------CCCCchHHHHHHHhcccc-----cCCCCEEEEEeccCCCChh
Q 018949 194 INADCIVVL--VDA---------CKAPERIDEILEEGVGDH-----KDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 194 ~~ad~iv~V--vD~---------~~~~~~~~~~~~~~~~~~-----~~~~p~ivv~NK~Dl~~~~ 242 (348)
..+-.|||+ +|+ +.+..+....+++++..+ ..++.+|.+-|+.|..++.
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPA 306 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPA 306 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChh
Confidence 456666665 333 123355566666666553 2578899999999988764
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.0091 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+|.|+|++|+|||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
|
|
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.017 Score=55.91 Aligned_cols=124 Identities=18% Similarity=0.271 Sum_probs=67.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh----CCceee--ecCCCCc--------------------eEEeEE-EE--------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI----GQKLSI--VTNKPQT--------------------TRHRIL-GI-------- 157 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~----~~~~~~--~~~~~~~--------------------t~~~~~-~~-------- 157 (348)
.++-.|+|+|-.||||||-+-.+. ..++.. ..-.+.. -..... +.
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 356689999999999999998853 344321 1111100 000000 00
Q ss_pred ------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHH--HHHHHhcccccCCCC-
Q 018949 158 ------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLP- 228 (348)
Q Consensus 158 ------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~--~~~~~~~~~~~~~~p- 228 (348)
-...+..++|+||+|-.+....-+.. + . -.......|.|+||-.+--+....+ ..+...+.. ...|
T Consensus 456 k~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~-l-~-k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~--~~~~r 530 (587)
T KOG0781|consen 456 KEAIQEARNQGFDVVLIDTAGRMHNNAPLMTS-L-A-KLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALAD--HSTPR 530 (587)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCChhHHHH-H-H-HHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhc--CCCcc
Confidence 12345679999999965533222211 1 1 1122468899999977644433322 233334433 2223
Q ss_pred --EEEEEeccCCCCh
Q 018949 229 --ILLVLNKKDLIKP 241 (348)
Q Consensus 229 --~ivv~NK~Dl~~~ 241 (348)
--++++|+|-++.
T Consensus 531 ~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 531 LIDGILLTKFDTVDD 545 (587)
T ss_pred ccceEEEEeccchhh
Confidence 2478999998764
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.012 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.|+|+|++|+|||||++.+.+..
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 79999999999999999998753
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.0093 Score=51.13 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+|+|+|+||+||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.0089 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.+.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 79999999999999999999853
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.01 Score=51.94 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
+.-.|+|+|++|+|||||+.++-+-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 33479999999999999999998754
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.0094 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|+|++|+|||||++++.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3347999999999999999999763
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.0099 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0096 Score=48.53 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHhC
Q 018949 118 VAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~ 137 (348)
|.++|+||+|||||+..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
|
... |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.012 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
..++++|++|+||||++..+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 379999999999999999988754
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.01 Score=53.03 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.01 Score=52.28 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|++|+|||||++.+.|..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999853
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.11 Score=50.17 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+|+|||+.|||||||+.-|+|.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 348999999999999999999985
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.011 Score=51.05 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.011 Score=48.52 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.|+|+|+.|+|||||+..|+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999875
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.011 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|++|+|||||++.+.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.013 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+.+.++|+|++|+|||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4457999999999999999998854
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.012 Score=50.01 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...|+|.|.+|+|||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999763
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.022 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+.++|++|+|||.|..++..
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHH
Confidence 699999999999999999865
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.011 Score=50.48 Aligned_cols=22 Identities=41% Similarity=0.401 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
-.++++|+.|+|||||++.+++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3799999999999999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.012 Score=51.49 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.013 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
.-.++|+|+.|+|||||++++.|
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999987
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.012 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.012 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|+.|+|||||++.+.|..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.013 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...++|+|++|+|||||++++++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999874
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.012 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|.|.+|+|||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999998763
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.012 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|+.|+|||||++.+.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.012 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.014 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999999864
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.012 Score=46.70 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|+|.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
|
... |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.23 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+.|.|++|+||||+++++...
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.013 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.014 Score=49.90 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 348 | ||||
| 3r9w_A | 307 | Crystal Structure Of Era In Complex With Mggdpnp An | 4e-33 | ||
| 3iev_A | 308 | Crystal Structure Of Era In Complex With Mggnp And | 5e-33 | ||
| 1x18_X | 292 | Contact Sites Of Era Gtpase On The Thermus Thermoph | 6e-31 | ||
| 1ega_A | 301 | Crystal Structure Of A Widely Conserved Gtpase Era | 7e-31 | ||
| 1wf3_A | 301 | Crystal Structure Of Gtp-Binding Protein Tt1341 Fro | 2e-26 | ||
| 3k53_A | 271 | Crystal Structure Of Nfeob From P. Furiosus Length | 2e-12 | ||
| 3pqc_A | 195 | Crystal Structure Of Thermotoga Maritima Ribosome B | 6e-12 | ||
| 4dcs_A | 456 | Crystal Structure Of B. Subtilis Enga In Complex Wi | 1e-11 | ||
| 2hjg_A | 436 | The Crystal Structure Of The B. Subtilis Yphc Gtpas | 1e-11 | ||
| 3geh_A | 462 | Crystal Structure Of Mnme From Nostoc In Complex Wi | 2e-10 | ||
| 3qq5_A | 423 | Crystal Structure Of The [fefe]-Hydrogenase Maturat | 6e-09 | ||
| 2e87_A | 357 | Crystal Structure Of Hypothetical Gtp-Binding Prote | 3e-08 | ||
| 1mky_A | 439 | Structural Analysis Of The Domain Interactions In D | 7e-08 | ||
| 1xzp_A | 482 | Structure Of The Gtp-Binding Protein Trme From Ther | 9e-08 | ||
| 2wjg_A | 188 | Structure And Function Of The Feob G-Domain From Me | 2e-07 | ||
| 2wjh_A | 166 | Structure And Function Of The Feob G-Domain From Me | 2e-07 | ||
| 2wji_A | 165 | Structure And Function Of The Feob G-Domain From Me | 2e-07 | ||
| 2wjj_A | 168 | Structure And Function Of The Feob G-Domain From Me | 3e-07 | ||
| 3gee_A | 476 | Crystal Structure Of Mnme From Chlorobium Tepidum I | 4e-07 | ||
| 2dyk_A | 161 | Crystal Structure Of N-Terminal Gtp-Binding Domain | 2e-06 | ||
| 1xtq_A | 177 | Structure Of Small Gtpase Human Rheb In Complex Wit | 9e-06 | ||
| 3t5g_A | 181 | Structure Of Fully Modified Farnesylated Rheb In Co | 2e-05 | ||
| 2gj9_A | 172 | Structure Of The Mnme G-Domain In Complex With GdpA | 2e-05 | ||
| 1rfl_A | 172 | Nmr Data Driven Structural Model Of G-Domain Of Mnm | 2e-05 | ||
| 2gj8_A | 172 | Structure Of The Mnme G-domain In Complex With Gdp* | 3e-05 | ||
| 3sea_A | 167 | Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo | 6e-05 | ||
| 3a1t_A | 258 | Crystal Structue Of The Cytosolic Domain Of T. Mari | 9e-05 | ||
| 3a1s_A | 258 | Crystal Structue Of The Cytosolic Domain Of T. Mari | 1e-04 | ||
| 3a1w_A | 168 | Crystal Structue Of The G Domain Of T. Maritima Feo | 2e-04 | ||
| 2l0x_A | 169 | Solution Structure Of The 21 Kda Gtpase Rheb Bound | 2e-04 | ||
| 2qtf_A | 364 | Crystal Structure Of A Gtp-Binding Protein From The | 3e-04 | ||
| 1udx_A | 416 | Crystal Structure Of The Conserved Protein Tt1381 F | 3e-04 | ||
| 1u0l_A | 301 | Crystal Structure Of Yjeq From Thermotoga Maritima | 4e-04 | ||
| 2wia_A | 267 | Crystal Structures Of The N-Terminal Intracellular | 5e-04 | ||
| 3kxk_A | 364 | Crystal Structure Of Ssgbp Mutation Variant G235p L | 5e-04 | ||
| 3hyr_A | 270 | Structural Insight Into G Protein Coupling And Regu | 5e-04 | ||
| 3i8s_A | 274 | Structure Of The Cytosolic Domain Of E. Coli Feob, | 7e-04 | ||
| 3hyt_A | 270 | Structural Basis Of Gdp Release And Gating In G Pro | 7e-04 |
| >pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And Nucleotides 1506- 1542 Of 16s Ribosomal Rna Length = 307 | Back alignment and structure |
|
| >pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308 | Back alignment and structure |
|
| >pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 292 | Back alignment and structure |
|
| >pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era Length = 301 | Back alignment and structure |
|
| >pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From Thermus Thermophilus Hb8 Length = 301 | Back alignment and structure |
|
| >pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus Length = 271 | Back alignment and structure |
|
| >pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195 | Back alignment and structure |
|
| >pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Sulfate Ion And Gdp Length = 456 | Back alignment and structure |
|
| >pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In Complex With Gdp Length = 436 | Back alignment and structure |
|
| >pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp, Folinic Acid And Zn Length = 462 | Back alignment and structure |
|
| >pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation Protein Hydf Length = 423 | Back alignment and structure |
|
| >pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With Gdp Length = 357 | Back alignment and structure |
|
| >pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A Switch Protein Containing Two Gtpase Domains Length = 439 | Back alignment and structure |
|
| >pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Length = 482 | Back alignment and structure |
|
| >pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From Methanococcus Jannaschii Length = 188 | Back alignment and structure |
|
| >pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From Methanococcus Jannaschii Length = 166 | Back alignment and structure |
|
| >pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From Methanococcus Jannaschii Length = 165 | Back alignment and structure |
|
| >pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From Methanococcus Jannaschii Length = 168 | Back alignment and structure |
|
| >pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In Complex With Gdp And Folinic Acid Length = 476 | Back alignment and structure |
|
| >pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161 | Back alignment and structure |
|
| >pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177 | Back alignment and structure |
|
| >pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181 | Back alignment and structure |
|
| >pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Rb+ Length = 172 | Back alignment and structure |
|
| >pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme Protein Length = 172 | Back alignment and structure |
|
| >pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-, Mg2+ And K+ Length = 172 | Back alignment and structure |
|
| >pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167 | Back alignment and structure |
|
| >pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form Ii Length = 258 | Back alignment and structure |
|
| >pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form I Length = 258 | Back alignment and structure |
|
| >pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron Iransporter Length = 168 | Back alignment and structure |
|
| >pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169 | Back alignment and structure |
|
| >pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The Hyperthermophilic Archaeon Sulfolobus Solfataricus Length = 364 | Back alignment and structure |
|
| >pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From Thermus Thermophilus Hb8 Length = 416 | Back alignment and structure |
|
| >pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima Length = 301 | Back alignment and structure |
|
| >pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain Of Feob From Klebsiella Pneumoniae In Apo Form Length = 267 | Back alignment and structure |
|
| >pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p Length = 364 | Back alignment and structure |
|
| >pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation Of Fe2+ Membrane Transport Length = 270 | Back alignment and structure |
|
| >pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob, Nucleotide-Free Form Length = 274 | Back alignment and structure |
|
| >pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein Coupled Fe2+ Transport Length = 270 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 287 bits (737), Expect = 2e-96
Identities = 69/218 (31%), Positives = 126/218 (57%), Gaps = 4/218 (1%)
Query: 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILY 168
S G++A++G+PNVGKSTL N+++GQK+SI + K QTTRHRI+GI + YQ I
Sbjct: 2 SIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV 61
Query: 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228
DTPG+ ++ ++ +M K S+ + + ++ +V+ + + +L + + K P
Sbjct: 62 DTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLR---EGKAP 118
Query: 229 ILLVLNKKDLIKP-GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287
++L +NK D ++ ++ L++ + +++P+SA+ G V+ I + LP
Sbjct: 119 VILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATH 178
Query: 288 YYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
++P+D +++ +RF EIIREK+ E+PY+ V
Sbjct: 179 HFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTV 216
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 284 bits (729), Expect = 4e-95
Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMIL 167
H + K GYVA++GKPNVGKSTL N ++G K+SI++ K TTR R+LG+ + P Q+I
Sbjct: 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIF 63
Query: 168 YDTPGIIE-KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-ILEEGVGDHKD 225
DTPGI E KK +L M++ + + AD I+ ++DA + DE I + +
Sbjct: 64 LDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK--PL 121
Query: 226 KLPILLVLNKKDLIKPGEIAKKL--EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
P+++V+NK D I P + L E ++K ++ E++P+SA G ++++ IL LP
Sbjct: 122 NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181
Query: 284 LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
G +P+D++++ P R EI+REK M R EVP + V
Sbjct: 182 EGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAV 223
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 281 bits (721), Expect = 4e-94
Identities = 74/215 (34%), Positives = 117/215 (54%), Gaps = 4/215 (1%)
Query: 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP 171
SG+VA++GKPNVGKSTL N ++G K++ ++ +PQTTR R+ GI + Q++ DTP
Sbjct: 4 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTP 63
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL 231
G+ + L M + V A + + +V +VD P DE++ + K+PILL
Sbjct: 64 GLHKPM-DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILL 122
Query: 232 VLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK 291
V NK D K E + ++ Y + E +SA V +++ +L +P GP +YP+
Sbjct: 123 VGNKLDAAKYPE--EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPE 180
Query: 292 D-IVSEHPERFFVGEIIREKIFMQYRNEVPYACQV 325
D S+ +V EI+RE+ + +EVPYA
Sbjct: 181 DYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVAT 215
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 2e-58
Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 10/201 (4%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYD 169
Y+ V G+ NVGKS+ N ++GQ +SIV++ TT + P + L D
Sbjct: 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVD 89
Query: 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI 229
TPG+ + L + ++ R ADC +++ D+ P D+++ + ++P
Sbjct: 90 TPGL--DDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE-DDVVNL---FKEMEIPF 143
Query: 230 LLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY- 288
++V+NK D++ E A++L+ + +V+ VSA G +DI I LP
Sbjct: 144 VVVVNKIDVLG--EKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEIP 201
Query: 289 YPKDIVSEHPERFFVGEIIRE 309
Y D++ V I
Sbjct: 202 YLGDLIDGGDLVILVVPIDLG 222
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-31
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI---- 173
+ G+ NVGKSTL ++ G+K+ +P TR I + D PG
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIEWKN----HKIIDMPGFGFMM 58
Query: 174 -IEKKI-HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD--------- 222
+ K++ + ++ + N D V++VD APE I + G
Sbjct: 59 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 118
Query: 223 HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-----VDEVIPVSAKYGHGVEDIRDW 277
+ +P ++ +NK D IK + EKF IP+SAK+G +E +++
Sbjct: 119 RELDIPTIVAVNKLDKIKNVQEVINF-LAEKFEVPLSEIDKVFIPISAKFGDNIERLKNR 177
Query: 278 ILTKLP 283
I +
Sbjct: 178 IFEVIR 183
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 6e-27
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 17/194 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175
V ++G+PNVGKSTL N+++ +K +IV ++ TR + G ++++ DT G+ +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLV--DTCGVFD 61
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPILL 231
++ M + + AD ++ +VD K E + + L K + +L
Sbjct: 62 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFL------RKSTVDTIL 115
Query: 232 VLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK 291
V NK + ++ E K E Y E IPVSA++ ++ + + I+ KL
Sbjct: 116 VANKAENLREFEREVKPELYS--LGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLES 173
Query: 292 DIVSEHPERF-FVG 304
+ VG
Sbjct: 174 KPEITDAIKVAIVG 187
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 1e-16
Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 40/205 (19%)
Query: 97 PDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-- 154
++E + VA++G+PNVGKSTL N ++ ++ ++V+ P TTR +
Sbjct: 166 EKGLDLESKPEITDAIK----VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDD 221
Query: 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMK--NVRS-AGI-NADCIVVLVDACKAPE 210
G +Y + DT G + +K + + K N R I AD +V+++D A +
Sbjct: 222 EVFIDGRKYVFV--DTAG-LRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLD---ATQ 275
Query: 211 RIDE--------ILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK-------FT 255
I + G ++V NK DL+ E K+ + + K F
Sbjct: 276 GITRQDQRMAGLMERRGRA-------SVVVFNKWDLVVHRE--KRYDEFTKLFREKLYFI 326
Query: 256 DVDEVIPVSAKYGHGVEDIRDWILT 280
D +I SA G ++ + D +
Sbjct: 327 DYSPLIFTSADKGWNIDRMIDAMNL 351
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-26
Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G+PNVGKS+L N+++ ++ ++V + P TR G+ + +L DT G+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPILLVL 233
+ + + V A +A+ ++ VD +A + E L + P++LV
Sbjct: 64 K--WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYL------RRKGKPVILVA 115
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
K D K Y + IP S+++ G+E++ + I +LP
Sbjct: 116 TKVDDPKHELYL--GPLYG--LGFGDPIPTSSEHARGLEELLEAIWERLP 161
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 1e-23
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 49/183 (26%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH------RILGICSGPEYQMILYDTP 171
V + G+PN GKS+L N + G++ +IVT+ TTR I G+ P + + DT
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM---P---LHIIDTA 60
Query: 172 GI------IEKKIHMLDSMMMKNVRSAGI--------NADCIVVLVDACKAPERID-EIL 216
G+ +E+ GI AD ++ +VD EI
Sbjct: 61 GLREASDEVERI---------------GIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW 105
Query: 217 EEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276
E + KLPI +V NK D+ ++ + +I +SA+ G GV+ +R+
Sbjct: 106 PEFIARLPAKLPITVVRNKADITGETLGMSEVNGH-------ALIRLSARTGEGVDVLRN 158
Query: 277 WIL 279
+
Sbjct: 159 HLK 161
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175
VA++G+PNVGKST+ N++ G+++SIV + P TR RI ++ +I DT G I+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLI--DTGG-ID 62
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDA----CKAPERIDEILEEGVGDHKDKLPILL 231
+ + + A AD I+ +V+ A E + +IL ++ K P++L
Sbjct: 63 IGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL------YRTKKPVVL 116
Query: 232 VLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
+NK D + ++Y E P+S +G G+ D+ D +
Sbjct: 117 AVNKLDNTEMRANI--YDFYS--LGFGEPYPISGTHGLGLGDLLDAVAEHFK 164
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 5e-17
Identities = 41/186 (22%), Positives = 87/186 (46%), Gaps = 41/186 (22%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIE 175
++G+PNVGKS+L N M+G++ IV+N TTR + + E+ ++ DT G +
Sbjct: 178 FCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIV--DTAG-MR 234
Query: 176 KKIHMLDSM----MMKNVRSAGI-NADCIVVLVDACKAPERIDEILEEGVGD-------- 222
KK + ++ +++ +++ I ++ + V++D EEG+ +
Sbjct: 235 KKGKVYETTEKYSVLRALKA--IDRSEVVAVVLDG-----------EEGIIEQDKRIAGY 281
Query: 223 -HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK-------FTDVDEVIPVSAKYGHGVEDI 274
H+ +++V+NK D + E ++ +E+ F D ++ +SA + +
Sbjct: 282 AHEAGKAVVIVVNKWDAVDKDE--STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTL 339
Query: 275 RDWILT 280
I+
Sbjct: 340 MPAIIK 345
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 9e-21
Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 38/194 (19%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH------RILGICSGPEYQMILYDTP 171
+ GKPN GKSTL N ++GQ+ +IV++ P TTR L DT
Sbjct: 236 TVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM------FRLTDTA 289
Query: 172 GI-----------IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGV 220
G+ I + + AD I+ L+D + +
Sbjct: 290 GLREAGEEIEHEGIRRSRMKMAE------------ADLILYLLDLGTERLDDELTEIREL 337
Query: 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280
L V NK D + T EVI +SA G G++ ++ +
Sbjct: 338 KAAHPAAKFLTVANKLDR--AANADALIRAIADGTG-TEVIGISALNGDGIDTLKQHMGD 394
Query: 281 KLPLGPAYYPKDIV 294
+ + ++
Sbjct: 395 LVKNLDKLHEASVL 408
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 91.0 bits (227), Expect = 2e-20
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 43/185 (23%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH------RILGICSGPEYQMILYDTP 171
VA++G+PNVGKS+L N +IVT+ P TTR + GI P + + DT
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI---P---VQVLDTA 280
Query: 172 GI-----------IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGV 220
GI +E+ ++ AD +++ +DA D+ + E V
Sbjct: 281 GIRETSDQVEKIGVERSRQAANT------------ADLVLLTIDAATGWTTGDQEIYEQV 328
Query: 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280
P++LV+NK DL++ I E ++ +++ +A G++ + IL
Sbjct: 329 KHR----PLILVMNKIDLVEKQLITSL----EYPENITQIVHTAAAQKQGIDSLETAILE 380
Query: 281 KLPLG 285
+ G
Sbjct: 381 IVQTG 385
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 9e-20
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 43/183 (23%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH------RILGICSGPEYQMILYDTP 171
+ ++GKPNVGKSTL N+++ + +IVT+ P TTR I GI + DT
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL------FRIVDTA 299
Query: 172 GI------------IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEG 219
G+ IE+ + ++ AD ++ ++DA + D + E
Sbjct: 300 GVRSETNDLVERLGIERTLQEIEK------------ADIVLFVLDASSPLDEEDRKILER 347
Query: 220 VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279
+ + L+V+NK D+++ + ++ +SA G G+E + + I
Sbjct: 348 IKNK----RYLVVINKVDVVEKINEEEIKNKLGTD---RHMVKISALKGEGLEKLEESIY 400
Query: 280 TKL 282
+
Sbjct: 401 RET 403
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 2e-17
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 8/188 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V + G PNVGKSTL + K I + P TTR +G ++ + DTPG++++
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEI-ASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDA---CKAP-ERIDEILEEGVGDHKDKLPILLVL 233
I + + + + + + I+ + D C P E + EE G+ KD P L+V+
Sbjct: 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDL-PFLVVI 287
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293
NK D+ I + ++ ++ I +SA G G++ +++ I+ L ++
Sbjct: 288 NKIDVADEENIKRLEKFVKE--KGLNPIKISALKGTGIDLVKEEIIKTLRPLAEKVAREK 345
Query: 294 VSEHPERF 301
+ R+
Sbjct: 346 IERELRRY 353
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 4e-17
Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 23/180 (12%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK- 176
+ + G PNVGKS+ N + V + TT++ +G + + DTPG++++
Sbjct: 32 IILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90
Query: 177 -----KIHMLDSMMMKNVRSAGINADCIVVLVDA---C-KAPERIDEILEEGVGDHKDKL 227
I M + ++ I+ ++D C + + +K
Sbjct: 91 FENRNTIEMTTITALAHIN------GVILFIIDISEQCGLTIKEQINLFYSIKSVFSNK- 143
Query: 228 PILLVLNKKDLIKPGEIAKKL-----EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
I++ NK D ++ + + + + S G GVE + L
Sbjct: 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELL 203
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-15
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 12/151 (7%)
Query: 102 IEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP 161
IE F + S V VLGK VGKS+ N +IG+++ V+ ++ +
Sbjct: 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG 82
Query: 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPERIDEILEEG 219
+ + + DTPG++E + ++ ++ +N D ++ + +DE+ ++
Sbjct: 83 GFTINIIDTPGLVEAGYV--NHQALELIKGFLVNRTIDVLLYVDRL--DVYAVDELDKQV 138
Query: 220 VGDHKDKL------PILLVLNKKDLIKPGEI 244
V LLVL P E+
Sbjct: 139 VIAITQTFGKEIWCKTLLVLTHAQFSPPDEL 169
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 1e-15
Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 33/190 (17%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKL----SIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173
VAV G+ GKS+ N + G + T + T R ++ +D PGI
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP-YKHPNIPNVVFWDLPGI 130
Query: 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 233
+ + ++ + ++ D + + + K V
Sbjct: 131 GSTNFPPDTYLEKMK------FYEYDFFIIISATRFKKNDIDIAKAI--SMMKKEFYFVR 182
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDE------------------VIPVSAK--YGHGVED 273
K D E + + ++K + + + +S K +
Sbjct: 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPV 242
Query: 274 IRDWILTKLP 283
+ D +++ LP
Sbjct: 243 LMDKLISDLP 252
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 9e-15
Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 30/177 (16%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----RILGICSGPEYQMILYDTPG- 172
VA +G+ NVGKS+L N + +K++ V+ P TR + + D PG
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV-------NSKYYFVDLPGY 78
Query: 173 --------IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK 224
+++ R + + +LVD P+ D ++ E +
Sbjct: 79 GYAKVSKKERMLWKRLVEDYFKN--RW---SLQMVFLLVDGRIPPQDSDLMMVEWMKSLN 133
Query: 225 DKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVEDIRDWI 278
+P +VL K D +K E AKKLE + K +IP S+ G G+ ++ D I
Sbjct: 134 --IPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLI 188
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-13
Identities = 43/199 (21%), Positives = 67/199 (33%), Gaps = 27/199 (13%)
Query: 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRIL-GICSGPEYQMILYDTPG--- 172
+A G+ N GKST N + QK L+ + P T+H + E L D PG
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91
Query: 173 ------IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK 226
+L S + R +++++DA + +D + E
Sbjct: 92 AEVPGAAKAHWEQLLSSYLQT--RP---QLCGMILMMDARRPLTELDRRMIEWFAPTG-- 144
Query: 227 LPILLVLNKKDLIKPGEIAKKLE---------WYEKFTDVDEVIPVSAKYGHGVEDIRDW 277
PI +L K D + E L + V SA G++D
Sbjct: 145 KPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHAL 204
Query: 278 ILTKLPLGPAYYPKDIVSE 296
I + L A V+E
Sbjct: 205 IESWLRPAAADEDHAAVAE 223
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Length = 195 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 4e-12
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 31/182 (17%)
Query: 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRH----RILGICSGPEYQMILYDTPG 172
+A+ G+ NVGKS+ N +I +K L+ ++KP T+ I ++ D PG
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-------NDELHFVDVPG 78
Query: 173 ---------IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH 223
E M+++ + R +V +VD AP D + E + +
Sbjct: 79 YGFAKVSKSEREAWGRMIETYITT--RE---ELKAVVQIVDLRHAPSNDDVQMYEFLKYY 133
Query: 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGVEDIRDWILT 280
+P++++ K D I G+ K + + DE+I S++ G ++ I
Sbjct: 134 G--IPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191
Query: 281 KL 282
+
Sbjct: 192 MI 193
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-12
Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 32/179 (17%)
Query: 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRH----RILGICSGPEYQMILYDTPG 172
VA G+ N GKS+ N + QK L+ + P T+ + L D PG
Sbjct: 29 VAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV-------ADGKRLVDLPG 81
Query: 173 ---------IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH 223
+ K L + K R + +VVL+D + +D+ + E D
Sbjct: 82 YGYAEVPEEMKRKWQRALGEYLEK--RQ---SLQGLVVLMDIRHPLKDLDQQMIEWAVDS 136
Query: 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEK----FTDVDEVIPVSAKYGHGVEDIRDWI 278
+ +L++L K D + G +L + F +V S+ GV+ +R +
Sbjct: 137 N--IAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 193
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 43/190 (22%), Positives = 72/190 (37%), Gaps = 42/190 (22%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNK------PQTTRHRILGICSGPEYQMILYDTP 171
+ ++G N GK++L N + G V K P + +++L DT
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSP-KRYAIPI-----NNRKIMLVDTV 234
Query: 172 GIIEKKIHMLDSMMMKNVRS------AGINADCIVVLVDAC----KAPERID---EILEE 218
G I + V + +D +++++D+ E + EIL E
Sbjct: 235 GFIRGIPPQI-------VDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILRE 287
Query: 219 -GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK----FTDVDEVIPVSAKYGHGVED 273
GV PIL+ LNK D I K + ++ + +VIP+SA +E
Sbjct: 288 IGVSG----KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLEL 343
Query: 274 IRDWILTKLP 283
+RD I
Sbjct: 344 LRDKIYQLAT 353
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-11
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 17/145 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+GK VGKS+ N +IG+++ ++ ++ S + + + DTPG+IE
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101
Query: 178 IH--MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL------PI 229
M +++ + I+ V +DA R+D + + D
Sbjct: 102 YINDMALNIIKSFLLDKTIDVLLYVDRLDAY----RVDNLDKLVAKAITDSFGKGIWNKA 157
Query: 230 LLVLNKKDLIKPGEIAKKLEWYEKF 254
++ L P + Y++F
Sbjct: 158 IVALTHAQFSPPDGLP-----YDEF 177
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 3e-11
Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 15/165 (9%)
Query: 95 ASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHR 153
+ ++ + P + + ++GK GKS N ++G+K+ ++ T+
Sbjct: 9 SGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKC 68
Query: 154 ILGICSGPEYQMILYDTPGIIEKKIHM--LDSMMMKNVRSA--GINADCIVVLVDAC--- 206
S E ++++ DTPGI + ++ +++ + G +A +VV +
Sbjct: 69 EKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE 128
Query: 207 --KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE 249
KA E+I ++ E ++L+ +KD + + L
Sbjct: 129 EHKATEKILKMFGERARSF-----MILIFTRKDDLGDTNLHDYLR 168
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 43/188 (22%)
Query: 118 VAVLGKPNVGKSTL--------ANQMIGQKLSIVTNKPQT----TRHRILGICSGPEYQM 165
+ G GK+T G+ +S+ T +T +G G + +
Sbjct: 17 IVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRF 76
Query: 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC-----KAPERIDEILE--E 218
LY PG + + ++++ D IV + D+ E + + E
Sbjct: 77 HLYTVPG--QVFYNASRKLILRG-------VDGIVFVADSAPNRLRANAESMRNMRENLA 127
Query: 219 GVGDHKDKLPILLVLNKKDL---IKPGEIAKKL----EWYEKFTDVDEVIPVSAKYGHGV 271
G D +PI++ +NK+DL + + + ++ V+ A G GV
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFP--------VLEAVATEGKGV 179
Query: 272 EDIRDWIL 279
+ +
Sbjct: 180 FETLKEVS 187
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 7e-11
Identities = 54/179 (30%), Positives = 79/179 (44%), Gaps = 43/179 (24%)
Query: 118 VAVLGKPNVGKSTLANQMIG--QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI-- 173
+A++G PNVGKST+ N + G + N P T + G + + D PG+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVY---IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62
Query: 174 -----IEKKIHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPER----IDEILEEGVGD 222
I++ I R IN D +V +VDA A ER +++E G
Sbjct: 63 LTANSIDEII----------ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLMEMGA-- 109
Query: 223 HKDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
+LL LNK DL K I KL EK V +V+P+SA G+E+++ I
Sbjct: 110 -----NLLLALNKMDLAKSLGIEIDVDKL---EKILGV-KVVPLSAAKKMGIEELKKAI 159
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 8e-11
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 39/184 (21%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDT 170
+ KS +A++G PNVGKST+ N + G+ + + N P T + G + + D
Sbjct: 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDL 61
Query: 171 PGI-------IEKKIHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPER----IDEILE 217
PG+ I++ I R IN D +V +VDA A ER +++E
Sbjct: 62 PGVYSLTANSIDEII----------ARDYIINEKPDLVVNIVDAT-ALERNLYLTLQLME 110
Query: 218 EGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274
G +LL LNK DL K I KL EK V +V+P+SA G+E++
Sbjct: 111 MGA-------NLLLALNKMDLAKSLGIEIDVDKL---EKILGV-KVVPLSAAKKMGIEEL 159
Query: 275 RDWI 278
+ I
Sbjct: 160 KKAI 163
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 1e-10
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 39/192 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI---- 173
VA+ G PNVGK++L N + G K V N P T + G+ + Y + L D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 174 ---IEKKIHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPER----IDEILEEGVGDHK 224
I++KI R + AD ++++ D+ PE+ + EILE
Sbjct: 67 YSSIDEKI----------ARDYLLKGDADLVILVADSV-NPEQSLYLLLEILEMEK---- 111
Query: 225 DKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281
++L + D K + +L +K + V+ S+ G G+E++++ I+
Sbjct: 112 ---KVILAMTAIDEAKKTGMKIDRYEL---QKHLGI-PVVFTSSVTGEGLEELKEKIVEY 164
Query: 282 LPLGPAYYPKDI 293
+ +
Sbjct: 165 AQKNTILHRMIL 176
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 52/217 (23%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQ------TTRHRILGICSGPEYQ-MILYD 169
V ++G PN GKS+L L+ +T P+ TT LG+ E + L D
Sbjct: 160 VGLVGYPNAGKSSL--------LAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLAD 211
Query: 170 TPGIIE-------------KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEI 215
PGIIE + I R+ ++ ++DA P + ++ +
Sbjct: 212 IPGIIEGASEGKGLGLEFLRHIA----------RTR-----VLLYVLDAADEPLKTLETL 256
Query: 216 LEEGVGDHKDKL---PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272
+E VG + L P L+ LNK DL++ + + + + V+PVSA G G+
Sbjct: 257 RKE-VGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR--EGLAVLPVSALTGAGLP 313
Query: 273 DIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIRE 309
+++ + + P V + V E++
Sbjct: 314 ALKEALHALVRSTPPPEMPKPVPRKEVQAGV-EVVPV 349
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Length = 271 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-10
Identities = 59/192 (30%), Positives = 84/192 (43%), Gaps = 38/192 (19%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI---- 173
VA++G PNVGK+T+ N + G + V N P T + GI E + ++ D PGI
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQH-VGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLT 64
Query: 174 ---IEKKIHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPER----IDEILEEGVGDHK 224
I++ I R+ ++ AD IV +VD+ R E+ E V
Sbjct: 65 AHSIDELI----------ARNFILDGNADVIVDIVDST-CLMRNLFLTLELFEMEVK--- 110
Query: 225 DKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281
I+LVLNK DL+K KK+ K V VIP +AK G GVE+++ I
Sbjct: 111 ---NIILVLNKFDLLKKKGAKIDIKKM---RKELGV-PVIPTNAKKGEGVEELKRMIALM 163
Query: 282 LPLGPAYYPKDI 293
P
Sbjct: 164 AEGKVTTNPIIP 175
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 5e-10
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
++G PNVGKSTL N++ + ++ ++P T + G E + L DTPGI+ K
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS-QQWVKVGKE--LELLDTPGILWPK 179
Query: 178 I 178
Sbjct: 180 F 180
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-08
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 195 NADCIVVLVDA-----CKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE 249
D + LVDA + P I++IL K+K P +++LNK D + E
Sbjct: 23 LIDIVYELVDARIPMSSRNPM-IEDIL-------KNK-PRIMLLNKADKADAAVTQQWKE 73
Query: 250 WYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFV 303
+E + +++ G G+ I L V R +
Sbjct: 74 HFEN--QGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALI 125
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 8e-10
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 58/208 (27%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQ------TTRHRILGICSGPEYQ-MILYD 169
V ++G P+VGKSTL LS+V++ KP+ TT LG+ + + ++ D
Sbjct: 161 VGLVGFPSVGKSTL--------LSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMAD 212
Query: 170 TPGIIE-------------KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----- 211
PG+IE + I R+ IV ++D R
Sbjct: 213 LPGLIEGAHQGVGLGHQFLRHIE----------RTR-----VIVHVIDMSGLEGRDPYDD 257
Query: 212 IDEILEEGVGDHKDKL---PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268
I +E + ++ +L P ++V NK D+ + E + + EK TD V P+SA
Sbjct: 258 YLTINQE-LSEYNLRLTERPQIIVANKMDMPEAAENLEAFK--EKLTDDYPVFPISAVTR 314
Query: 269 HGVEDIRDWI---LTKLPLGPAYYPKDI 293
G+ ++ + L P P Y +++
Sbjct: 315 EGLRELLFEVANQLENTPEFPLYDEEEL 342
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 46/199 (23%), Positives = 72/199 (36%), Gaps = 40/199 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI---- 173
+A++G PN GK++L N + G V N P T R G+ + + D PGI
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMS 63
Query: 174 ---IEKKIHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPER----IDEILEEGVGDHK 224
E K+ R ++ AD I+ +VDA ER +++E G+
Sbjct: 64 PYSPEAKV----------ARDYLLSQRADSILNVVDAT-NLERNLYLTTQLIETGI---- 108
Query: 225 DKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281
P+ + LN D++ KL V V+ SA GV+ +
Sbjct: 109 ---PVTIALNMIDVLDGQGKKINVDKL---SYHLGV-PVVATSALKQTGVDQVVKKAAHT 161
Query: 282 LPLGPAYYPKDIVSEHPER 300
I + E
Sbjct: 162 TTSTVGDLAFPIYDDRLEA 180
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G PN GKST+ N++ G++ S V +P T+ I + + DTPGI+ K
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKG-IQWFSLEN--GVKILDTPGILYKN 158
Query: 178 IHMLDSMMM---------KNVRSAGINADCIVVLVDACKAPERIDEILEE 218
I D + + I + + E E+
Sbjct: 159 IFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIFARSIGIESSFSEFFED 208
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-09
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 32/192 (16%)
Query: 118 VAVLGKPNVGKSTLANQMIG--QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI-- 173
+ ++G PN GK+TL NQ+ G Q+ V N T R G S ++Q+ L D PG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQR---VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62
Query: 174 --IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----IDEILEEGVGDHKDKL 227
LD + + +G +AD ++ +VDA ER ++LE G+
Sbjct: 63 LTTISSQTSLDEQIACHYILSG-DADLLINVVDAS-NLERNLYLTLQLLELGI------- 113
Query: 228 PILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI---LTK 281
P ++ LN D+ + I L VIP+ + G G+E ++ I
Sbjct: 114 PCIVALNMLDIAEKQNIRIEIDAL---SARLGC-PVIPLVSTRGRGIEALKLAIDRYKAN 169
Query: 282 LPLGPAYYPKDI 293
+ +Y + +
Sbjct: 170 ENVELVHYAQPL 181
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 7e-09
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 43/182 (23%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI---- 173
++G PN GK+TL N + V N P T + G E+ + + D PG+
Sbjct: 4 ALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62
Query: 174 -------IEKKIHMLDSMMMKNVRSAGIN--ADCIVVLVDACKAPER----IDEILEEGV 220
+++I + I+ DCI+ ++DAC ER ++ E G
Sbjct: 63 ANAEGISQDEQI----------AAQSVIDLEYDCIINVIDAC-HLERHLYLTSQLFELGK 111
Query: 221 GDHKDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277
P+++ LN D+ + I +KL E VIP+ A G+ ++
Sbjct: 112 -------PVVVALNMMDIAEHRGISIDTEKL---ESLLGC-SVIPIQAHKNIGIPALQQS 160
Query: 278 IL 279
+L
Sbjct: 161 LL 162
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 3e-08
Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 17/143 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEK 176
+ ++GK GKS N ++ ++ QT T+ S ++++ DTP +
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSW 84
Query: 177 KIHMLDSMMMKNVRSA-----GINADCIVVLVDAC-----KAPERIDEILEEGVGDHKDK 226
K H +++ + R G + +V + +A +R+ EI E H
Sbjct: 85 KDHC-EALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGH--- 140
Query: 227 LPILLVLNKKDLIKPGEIAKKLE 249
+++ K+ + G + +
Sbjct: 141 --TIVLFTHKEDLNGGSLMDYMH 161
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 9e-08
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245
++ + G + +V +VD L VG++ +LLV NK DLI
Sbjct: 60 LRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNN----KVLLVGNKADLIPKSVKH 115
Query: 246 KKLE-WYEKFT-----DVDEVIPVSAKYGHGVEDIRDWI 278
K++ W ++V +SA G G+ ++ D I
Sbjct: 116 DKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAI 154
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQTTRHRI-LGICSGPEYQMI 166
V V+G NVGKST N+MI + + ++ P TT I + + + +
Sbjct: 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL----DEESS 214
Query: 167 LYDTPGIIEKK--IHMLDSMMMKNV 189
LYDTPGII H + +K +
Sbjct: 215 LYDTPGIINHHQMAHYVGKQSLKLI 239
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 2e-07
Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 35/145 (24%)
Query: 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDA--CKAPER-IDEILE 217
E +L DTPG +E + + + +V + D K P
Sbjct: 107 KENDYVLIDTPGQMETFLF---HEFGVRLMEN-LPYPLVVYISDPEILKKPNDYCFVRFF 162
Query: 218 EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY-------------------------- 251
+ D + + LNK DL+ E + +++
Sbjct: 163 ALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCS 222
Query: 252 --EKFTDVDEVIPVSAKYGHGVEDI 274
+ V+ +SAK G ED+
Sbjct: 223 MMTEVLPPVRVLYLSAKTREGFEDL 247
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 3e-07
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQ 164
+ + G V V+G NVGKST N++I + + + P TT I
Sbjct: 157 NRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---G 213
Query: 165 MILYDTPGIIEKK--IHMLDSMMMKNV 189
LYDTPGII H +D+ +K +
Sbjct: 214 ATLYDTPGIINHHQMAHFVDARDLKII 240
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 8e-07
Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 10/119 (8%)
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235
+ + + D + + G + +V +VD L D+ PILLV NK
Sbjct: 52 QDVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADN----PILLVGNK 107
Query: 236 KDLIKPGEIAKKL-EWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY 288
DL+ KL W + +V VSA G G+ + + I G Y
Sbjct: 108 ADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVY 166
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 5e-07
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 30/147 (20%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKL-----SIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
+ + G N GK++L + + S G ++ D PG
Sbjct: 51 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYD--------GSGVTLV--DFPG 100
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-------ILEEGVGDHKD 225
K+ + +++ ++ +VD+ P+++ IL ++
Sbjct: 101 --HVKLR---YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 155
Query: 226 KLPILLVLNKKDL---IKPGEIAKKLE 249
+ IL+ NK +L P +I LE
Sbjct: 156 GIDILIACNKSELFTARPPSKIKDALE 182
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 5e-07
Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 24/149 (16%)
Query: 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDT 170
+ + G N GK++L + + +V+ +P + G ++ D
Sbjct: 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLV--DF 62
Query: 171 PGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDE-------ILEEGVGDH 223
PG K+ + +++ ++ +VD+ P+++ IL
Sbjct: 63 PG--HVKLR---YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 117
Query: 224 KDKLPILLVLNKKDL---IKPGEIAKKLE 249
++ + IL+ NK +L P +I LE
Sbjct: 118 ENGIDILIACNKSELFTARPPSKIKDALE 146
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 9e-07
Identities = 46/243 (18%), Positives = 84/243 (34%), Gaps = 35/243 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSI---------VTNKPQTTRHRILGICSGPEYQMILY 168
V ++G GK++L Q+IG+ V K + E +
Sbjct: 44 VHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFW 103
Query: 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228
D G ++ +H M + ++L+D+ + L + + K P
Sbjct: 104 DFGG--QEIMHASHQFFMTR-------SSVYMLLLDS-RTDSNKHYWLRH-IEKYGGKSP 152
Query: 229 ILLVLNKKDLIKPGEIAKKLEWYEKFTDV-DEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287
+++V+NK D I +K + E+F + + +S K G GVE I + + + +
Sbjct: 153 VIVVMNKIDENPSYNIEQK-KINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDS 211
Query: 288 YYPKDIVSEHPERFF-VGEIIRE---KIFMQYRNEVPYACQVCNLTFQHWLIFVEFNAFL 343
Y + + V E + E R EV C +T E L
Sbjct: 212 IYGTPL----APSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPG-----ERKTLL 262
Query: 344 NFC 346
+
Sbjct: 263 GYL 265
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 189 VRSAGINADCIVVLVDACKAPE----RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244
+ N D ++++V K PE ID+ L V K++L ++V+NK DL ++
Sbjct: 78 TKPHVANVDQVILVV-TVKMPETSTYIIDKFL---VLAEKNELETVMVINKMDLYDEDDL 133
Query: 245 AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
K E E ++ + ++ SAK G G+E++++++
Sbjct: 134 RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL 167
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 189 VRSAGINADCIVVLVDACKAPE----RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244
+R N D ++++ K PE +D +L V K+ ++V NK DL+ E
Sbjct: 73 IRPKVANVDRVIIVE-TLKMPEFNNYLLDNML---VVYEYFKVEPVIVFNKIDLLNEEEK 128
Query: 245 AKKLEWYEKFTDVD-EVIPVSAKYGHGVEDIRDWI 278
+ W + D +V+ VSAK G G++++ D++
Sbjct: 129 KELERWISIYRDAGYDVLKVSAKTGEGIDELVDYL 163
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
N + ++V+VD+ ERI EE + H+D K +L+ NK+D+ + EI++
Sbjct: 88 NTEFVIVVVDST-DRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQF 146
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L+ + A G G+ +W++++L
Sbjct: 147 LKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 7e-06
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 24/103 (23%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
IV +VDA E+I+ E + D +P+L++ NK+DL + E+ +K
Sbjct: 90 GVSAIVYMVDAA-DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEK 148
Query: 248 LE--------WYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
+ +S K ++ W++
Sbjct: 149 MNLSAIQDREIC--------CYSISCKEKDNIDITLQWLIQHS 183
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-06
Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
+ ++ +VD+ +R+ +E + ++ +L+ NK+D + E++K+
Sbjct: 85 DTAAVIFVVDST-DKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKE 143
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L E ++ SA G G+ + DW++ +
Sbjct: 144 LNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
N ++ +VD+ ER++E EE + + +L+ NK+DL + EI K
Sbjct: 67 NTQGLIFVVDSN-DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 125
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L + + A G G+ + DW+ +L
Sbjct: 126 LGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
+ D ++ +VD+ +R+ + E + + +L+ NK+DL + I +
Sbjct: 85 STDGLIWVVDSA-DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEA 143
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
LE + + SA G + DW+L +
Sbjct: 144 LELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 195 NADCIVVLVDACK---APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY 251
N D IV+ V A + ID L VG ++ L+VLNK DL+ + E
Sbjct: 130 NIDQIVI-VSAILPELSLNIIDRYL---VGCETLQVEPLIVLNKIDLLDDEGMDFVNEQM 185
Query: 252 EKFTDVD-EVIPVSAKYGHGVEDIRDWI 278
+ + ++ V+ VS+ G++ + + +
Sbjct: 186 DIYRNIGYRVLMVSSHTQDGLKPLEEAL 213
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
N + ++V+VD+ ERI EE + H+D K +L+ NK+D+ + EI++
Sbjct: 83 NTEFVIVVVDST-DRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQF 141
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L+ + A G G+ +W++++L
Sbjct: 142 LKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-05
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
N D ++ ++D+ +R +E +E + + + +P+L+ NK+DL EIA+
Sbjct: 83 NTDILIYVIDSA-DRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEG 141
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L + V ++ SA G GV+D +W+ +
Sbjct: 142 LNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD----KLPILLVLNKKDL---IKPGEIA 245
I+ ++D+ R+ EE + +H D ++PIL NK DL + +++
Sbjct: 90 EGQAIIFVIDSS-DRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVS 148
Query: 246 KKLEWYEKFTDVD-EVIPVSAKYGHGVEDIRDWILTKL 282
+ L E D + A G G+++ DW+ ++
Sbjct: 149 QLLC-LENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
N D ++ +VD+C +RI E + + ++ K +++ NK+D+ + E+A
Sbjct: 74 NTDAVIYVVDSC-DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANS 132
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L ++ SA G G+++ +W++ L
Sbjct: 133 LGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
N ++ +VD+ ER+ E +E + + +L+ NK+D+ + E+ K
Sbjct: 96 NTQGLIFVVDSN-DRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDK 154
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L + V A G G+ D DW+ +L
Sbjct: 155 LGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
+ D ++ +VD+ +R+ E + D + K +L+ NK+DL EIA++
Sbjct: 89 DTDAVIYVVDST-DRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQ 147
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L ++ S+K G G+ + DW++ +L
Sbjct: 148 LGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 189 VRSAGINADCIVVLVDACKAPE----RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244
+R N D V++ + P +D L V + + ++ + K DLI+ +
Sbjct: 80 IRPPICNVDQAVLVF-SAVQPSFSTALLDRFL---VLVEANDIQPIICITKMDLIEDQDT 135
Query: 245 AKKLE-WYEKFTDVD-EVIPVSAKYGHGVEDIRDWI 278
++ + E + ++ +V S+K + DI
Sbjct: 136 EDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF 171
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 38/281 (13%), Positives = 84/281 (29%), Gaps = 69/281 (24%)
Query: 60 LWSNQREMDLDDGDEME---------FDDASSFLSLSEKPDRNMASPDDY-EIEEFDYAS 109
L S + ++D F N++ Y ++ +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKYNVSRLQPYLKLRQALLEL 147
Query: 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI----LGICSGPEYQM 165
P V + G GK+ +A + + +I L C
Sbjct: 148 RPA---KNVLIDGVLGSGKTWVALDVC-LSYKVQCKMD----FKIFWLNLKNC------- 192
Query: 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKD 225
++P + + + L + N S ++ I + + + + + +L+ +++
Sbjct: 193 ---NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKS--KPYEN 245
Query: 226 KLPIL------------------LVL--NKK--DLIKPGEIAK-KLEWYEK-FTDVDEVI 261
L +L L+ K+ D + L+ + T DEV
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVK 304
Query: 262 PVSAKY-GHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERF 301
+ KY +D+ +LT P + + I + +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATW 344
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 20/107 (18%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
+ IV LVD ER+ E EE + + +PIL++ NK D I + +
Sbjct: 92 AINGIVFLVDCA-DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREM 150
Query: 248 LEWYEKFTDVD------------EVIPVSAKYGHGVEDIRDWILTKL 282
Y + T EV S G + W+ +
Sbjct: 151 FGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 3e-04
Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 48/174 (27%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQ------------- 164
V V G+ + GK++ ++ Q++ P+ T + + G
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEK 127
Query: 165 ----------------------------MILYDTPGIIEKKIHMLDSM--MMKNVRSAGI 194
+ + DTPGI+ + +R
Sbjct: 128 PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAE 187
Query: 195 NADCIVVLVDACKAPERIDEILE--EGVGDHKDKLPILLVLNKKDLIKPGEIAK 246
D I++L DA K E DE E + H+DK I +VLNK D+++ ++ +
Sbjct: 188 RVDLIILLFDAHK-LEISDEFSEAIGALRGHEDK--IRVVLNKADMVETQQLMR 238
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
N ++ +VD+ ER++E EE + + +L+ NK+DL + EI K
Sbjct: 232 NTQGLIFVVDSN-DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDK 290
Query: 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L + + A G G+ + DW+ +L
Sbjct: 291 LGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 15/102 (14%)
Query: 195 NADCIVVLVDACKAPERIDEILEE--GVGDHKD--KLPILLVLNKKDL---IKPGEIAKK 247
+ IV LVDA PER DE E + + + +P +++ NK D + E+
Sbjct: 90 EVNGIVFLVDAA-DPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSA 148
Query: 248 LEWYEKFTDVD-------EVIPVSAKYGHGVEDIRDWILTKL 282
L EV S +G + W+ +
Sbjct: 149 LGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 28/146 (19%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKL-----SIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
V +G + GK+ L +++ + SI + + G + L D PG
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGN------SLTLIDLPG 63
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE------GVGDHKDK 226
+ + ++ +S +A +V +VD+ + ++ E K+
Sbjct: 64 --HESLR---FQLLDRFKS---SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS 115
Query: 227 LPILLVLNKKDL---IKPGEIAKKLE 249
+L+ NK+D+ I ++LE
Sbjct: 116 PSLLIACNKQDIAMAKSAKLIQQQLE 141
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* Length = 599 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 8e-04
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 227 LPILLVLNKKDL--IKPGEIAKKLEWYEKFTDV-----DEVIPVSAKYGHGVEDIRDWIL 279
L ++ VLNK DL P +A+++E D+ + + SAK G GV+D+ + ++
Sbjct: 124 LEVVPVLNKIDLPAADPERVAEEIE------DIVGIDATDAVRCSAKTGVGVQDVLERLV 177
Query: 280 TKLP 283
+P
Sbjct: 178 RDIP 181
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Length = 600 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 8e-04
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 227 LPILLVLNKKDL--IKPGEIAKKLEWYEKFTDV-----DEVIPVSAKYGHGVEDIRDWIL 279
L I+ V+NK DL + K++E +V +E I SAK G G+E+I + I+
Sbjct: 126 LVIIPVINKIDLPSADVDRVKKQIE------EVLGLDPEEAILASAKEGIGIEEILEAIV 179
Query: 280 TKLP 283
++P
Sbjct: 180 NRIP 183
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 8e-04
Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 27/180 (15%)
Query: 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQT----TRHRILGICSGPEYQMIL--YDTPGI 173
++G GK+TL Q++ K S + + T + + I + ++L +D G
Sbjct: 7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAG- 65
Query: 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI---LEEGVGDHKDKLPIL 230
++ + M + + D K +D + L + P++
Sbjct: 66 -REEFYSTHPHFMTQ-------RALYLAVYDLSKGQAEVDAMKPWLFN-IKARASSSPVI 116
Query: 231 LVLNKKDLIK-------PGEIAKKLEWYEKFTDVDEVIPV-SAKYGHGVEDIRDWILTKL 282
LV D+ +I K+L F + + V + + + +R I+ +
Sbjct: 117 LVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 348 | |||
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 100.0 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 100.0 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 100.0 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.91 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.91 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.91 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.9 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.9 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.9 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.9 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.9 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.89 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.89 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.89 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.89 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.89 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.89 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.89 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.88 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.88 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.88 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.88 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.88 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.88 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.88 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.88 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.88 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.88 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.88 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.88 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.88 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.88 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.88 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.88 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.88 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.87 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.87 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.87 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.87 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.87 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.87 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.87 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.87 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.87 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.87 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.87 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.87 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.87 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.87 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.87 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.87 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.87 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.87 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.87 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.87 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.87 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.87 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.87 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.87 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.87 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.87 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.87 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.86 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.86 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.86 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.86 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.86 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.86 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.86 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.86 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.86 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.86 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.86 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.86 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.86 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.86 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.86 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.86 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.86 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.86 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.86 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.86 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.86 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.86 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.86 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.86 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.86 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.86 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.86 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.86 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.86 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.86 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.85 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.85 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.85 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.85 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.85 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.85 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.85 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.85 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.85 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.85 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.85 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.85 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.85 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.85 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.85 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.85 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.85 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.85 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.85 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.85 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.85 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.85 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.84 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.84 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.84 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.84 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.84 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.84 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.84 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.84 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.84 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.84 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.84 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.83 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.83 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.83 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.83 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.83 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.83 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.83 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.82 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.82 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.82 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.82 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.82 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.82 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.7 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.81 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.81 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.81 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.81 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.81 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.8 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.8 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.79 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.79 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.79 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.78 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.78 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.77 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.77 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.77 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.77 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.77 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.77 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.76 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.76 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.76 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.76 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.75 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.75 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.75 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.74 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.74 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.73 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.73 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.73 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.73 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.72 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.71 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.71 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.71 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.71 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.71 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.71 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.7 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.7 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.69 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.69 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.69 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.69 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.68 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.67 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.67 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.65 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.64 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.63 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.62 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.61 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.58 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.58 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.57 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.56 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.51 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.49 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.48 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.47 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.4 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.37 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.33 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.31 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.31 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.31 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.25 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.24 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.21 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.2 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.19 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 99.18 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.09 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.03 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.95 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.92 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 98.86 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 98.86 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.78 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.76 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.73 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.66 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.61 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.61 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.52 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.49 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.48 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.44 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.39 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.34 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.31 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.11 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.02 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.81 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.75 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.68 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.64 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.58 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.53 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.45 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.35 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.3 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.2 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.19 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.12 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.11 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.01 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.94 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.91 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.88 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.87 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 96.71 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 96.7 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 96.66 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.62 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.46 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 96.42 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.4 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 96.21 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.17 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.07 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 96.05 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 96.03 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.02 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 95.96 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 95.95 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 95.93 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 95.91 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 95.85 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 95.85 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 95.81 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.81 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 95.78 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 95.75 | |
| 3q9l_A | 260 | Septum site-determining protein MIND; ATPase, bact | 95.74 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 95.74 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 95.73 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 95.73 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 95.72 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 95.72 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 95.69 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 95.69 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 95.69 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 95.68 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 95.63 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 95.61 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.59 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 95.58 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 95.58 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 95.57 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 95.56 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 95.56 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 95.53 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 95.52 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 95.52 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 95.52 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 95.52 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 95.45 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 95.45 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 95.44 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 95.44 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 95.43 | |
| 2oze_A | 298 | ORF delta'; para, walker type atpases, DNA segrega | 95.32 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.31 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 95.31 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 95.28 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 95.26 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 95.24 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.22 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 95.2 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 95.12 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 95.11 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 95.09 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.07 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.03 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 94.99 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 94.98 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 94.98 | |
| 3zq6_A | 324 | Putative arsenical pump-driving ATPase; tail-ancho | 94.95 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 94.94 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 94.93 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.91 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 94.89 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 94.88 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 94.86 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 94.85 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.85 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 94.84 | |
| 3ug7_A | 349 | Arsenical pump-driving ATPase; tail-anchored, memb | 94.84 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 94.81 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.81 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 94.79 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 94.76 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 94.75 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 94.73 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.72 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 94.72 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.71 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 94.71 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 94.69 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 94.66 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.66 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.63 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 94.63 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 94.62 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 94.59 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 94.56 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 94.56 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 94.56 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.53 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 94.52 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.51 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 94.51 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.5 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 94.49 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.49 | |
| 2xj4_A | 286 | MIPZ; replication, cell division, ATPase, WACA; 1. | 94.46 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 94.46 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.46 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.45 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.45 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.45 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 94.42 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 94.41 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 94.38 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.38 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 94.36 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.33 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 94.32 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 94.28 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 94.26 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 94.24 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 94.21 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 94.2 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.2 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.19 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 94.13 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.11 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 94.06 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.06 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.05 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.05 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 94.04 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.03 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.02 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.0 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 93.98 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 93.95 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 93.95 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 93.94 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 93.93 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 93.87 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.85 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 93.79 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 93.76 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.75 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 93.72 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 93.72 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 93.71 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 93.69 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 93.67 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 93.67 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 93.6 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 93.6 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 93.56 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 93.54 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 93.53 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 93.5 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 93.48 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 93.48 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 93.45 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 93.39 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 93.36 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 93.35 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 93.33 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 93.32 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 93.32 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 93.31 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 93.31 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.28 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 93.27 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 93.24 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 93.2 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 93.19 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 93.15 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 93.11 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 93.11 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 93.09 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 93.01 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 92.96 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 92.93 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 92.92 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 92.9 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 92.9 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 92.86 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 92.85 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 92.84 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 92.83 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 92.81 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 92.8 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 92.77 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 92.75 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 92.74 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 92.72 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 92.7 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 92.69 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 92.67 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 92.67 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 92.67 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 92.63 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 92.62 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 92.53 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 92.52 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 92.51 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 92.4 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 92.37 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 92.37 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 92.35 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 92.34 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 92.26 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 92.17 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 92.12 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 92.08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 91.87 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 91.77 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 91.43 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 91.41 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 91.28 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 91.2 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 91.16 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 91.11 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.1 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 91.04 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 91.03 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 91.01 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 90.99 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 90.94 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 90.93 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 90.89 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 90.84 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 90.75 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 90.68 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 90.68 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 90.67 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 90.63 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 90.54 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 90.53 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 90.49 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 90.45 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 90.37 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 90.36 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 90.32 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 90.28 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 90.21 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 90.19 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 90.08 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 90.05 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 90.04 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 90.0 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 90.0 |
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=271.40 Aligned_cols=231 Identities=35% Similarity=0.529 Sum_probs=197.1
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhh-hhhhHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKK-IHMLDSMMMK 187 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~-~~~l~~~~~~ 187 (348)
.++...+.|+++|.+|||||||+|+|++.++..+++.+++|+.....+...+ +.++.+|||||+.+.. ...+...+..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 3455677999999999999999999999999888999999999998888887 8999999999985432 1456666777
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHH-HHhcccccCCCCEEEEEeccCCC-ChhhHHHHHHHHHhcC-CCCeEEEec
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEIL-EEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFT-DVDEVIPVS 264 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~~-~~~~i~~vS 264 (348)
.+..++..+|++++|+|++++.......+ ...+.. .+.|+++|+||+|+. +..........+.... ...+++++|
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 78888999999999999998775555554 666666 679999999999998 5665566666666665 466899999
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEecc---ceEEEee
Q 018949 265 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWL---IFVEFNA 341 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~~---~~~~~~~ 341 (348)
|++|.|+++|++.|.+.++..++.++.+..++.+.+++++|++|+++++.+++|+||++.+.++.|.++. ...+|++
T Consensus 163 A~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a 242 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKG 242 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEE
T ss_pred CCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865 5556654
Q ss_pred e
Q 018949 342 F 342 (348)
Q Consensus 342 ~ 342 (348)
.
T Consensus 243 ~ 243 (308)
T 3iev_A 243 E 243 (308)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=263.28 Aligned_cols=225 Identities=33% Similarity=0.463 Sum_probs=190.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+.++|+++|++|||||||+|+|++.++..+++.++||++....++..++.++.+|||||+.+ ....+...+...+..+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~-~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK-PMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC-CCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccc-hhhHHHHHHHHHHHHH
Confidence 467799999999999999999999999887888999999888888888889999999999854 3345666677788889
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
+..+|++++|+|++++....+.++...++....+.|+++|+||+|+..... +......+ .+..+++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeCCCCCCH
Confidence 999999999999998877777777766665323799999999999986554 43333333 45568999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCccc-CCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEec-cceEEEee
Q 018949 272 EDIRDWILTKLPLGPAYYPKDIV-SEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHW-LIFVEFNA 341 (348)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~-~~~~~~~~ 341 (348)
++|++.|.+.++..++.|+.+.. ++.+.++...|.+|+++++.+++++||.+.+.++.|..+ ....++.+
T Consensus 161 ~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~ 232 (301)
T 1wf3_A 161 AELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKA 232 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEE
Confidence 99999999999999999998888 899999999999999999999999999999999999973 34455554
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=250.92 Aligned_cols=226 Identities=31% Similarity=0.535 Sum_probs=189.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+.++|+|+|++|||||||+|+|++.++.+++..+++|++...+++..++.++.+|||||+.......+...+...+..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 46678999999999999999999999988788889999988888888888999999999975223344444555556677
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC-hhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
+..+|++++|+|+++ ......++...+.. .+.|+++|+||+|+.. ..........+....+..+++++||++|.|+
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 899999999999987 77667777776665 6799999999999987 4555555666666556567999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEec-cceEEEee
Q 018949 272 EDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHW-LIFVEFNA 341 (348)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~-~~~~~~~~ 341 (348)
++|++.+.+.++..++.|+.+..++.+.++...|++|+++++.+.+++||...+.++.|.++ .+.+++.+
T Consensus 163 ~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~ 233 (301)
T 1ega_A 163 DTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDING 233 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEE
T ss_pred HHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999853 23454443
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-24 Score=187.21 Aligned_cols=170 Identities=22% Similarity=0.215 Sum_probs=126.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhh-hhH---HHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIH-MLD---SMMM 186 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~-~l~---~~~~ 186 (348)
...++|+++|.+|+|||||+|+|++.. ...++..+++|.......+. .++..+.+|||||+...... ... ..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 345699999999999999999999987 45677888888887655555 66788999999997542110 001 1122
Q ss_pred HHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH----HHHHhc-----CCC
Q 018949 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKF-----TDV 257 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~----~~~~~~-----~~~ 257 (348)
..+......+|++++|+|++++.......+...+.. .+.|+++|+||+|+.......... ..+... ...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGK 184 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCC
Confidence 333344566899999999998877777777777766 679999999999998866543322 233332 345
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.+++++||++|.|+++|+++|.+.++.
T Consensus 185 ~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 185 LTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp EEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 689999999999999999999998865
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-25 Score=214.04 Aligned_cols=209 Identities=24% Similarity=0.248 Sum_probs=118.3
Q ss_pred hhhhccccCCCCc-cCCcCCccccccccCCCCCC-CCCCChhhhhhccccCCCCCCccEEEEEcCCCCChHHHHHHHhCC
Q 018949 61 WSNQREMDLDDGD-EMEFDDASSFLSLSEKPDRN-MASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 61 ~~~~~e~~~d~~e-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+.+|+.+||.| |.+..+...+.......... ............. ....+|+++|.+|||||||+|+|++.
T Consensus 183 ~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~------r~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 183 SCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV------SEGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCEEEEEECCTTSSHHHHHHHCC--
T ss_pred HHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh------cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456788899966 44444554443322222111 1111111111111 12347999999999999999999999
Q ss_pred ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCch----HHH
Q 018949 139 KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----IDE 214 (348)
Q Consensus 139 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~----~~~ 214 (348)
+...+++.+++|++.....+..++..+.+|||||+.+ ............+..++..+|++++|+|++++... ...
T Consensus 257 ~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~ 335 (476)
T 3gee_A 257 ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE-AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIR 335 (476)
T ss_dssp ----------------CEEEEETTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHH
T ss_pred CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc-chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHH
Confidence 8777899999999998888888899999999999744 22333444456677789999999999999987643 233
Q ss_pred HHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 215 ILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 215 ~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+...+ .++|+++|+||+|+........ ..+... +..+++++||++|.|+++|+++|.+.+.
T Consensus 336 ~~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 336 ELKAAH----PAAKFLTVANKLDRAANADALI--RAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHHHhc----CCCCEEEEEECcCCCCccchhH--HHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 333332 3689999999999987654432 223222 2257999999999999999999998876
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=179.98 Aligned_cols=160 Identities=26% Similarity=0.347 Sum_probs=115.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|.+|+|||||++++.+.........+++|.......+...+..+.+|||||.... ..+...+...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG--DKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSS--SSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc--cchHHHHHHHHHHHHHh
Confidence 3899999999999999999999886656777788877777777777789999999996432 12333344556667899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++++|+|++++......++...+.. .+.|+++|+||+|+....+ ....+. ..+..+++++||++|.|+++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~---~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHEL---YLGPLY-GLGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGG---GCGGGG-GGSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchH---hHHHHH-hCCCCCeEEEecccCCChHHHH
Confidence 999999999998877766667766665 6799999999999976532 112222 2233478999999999999999
Q ss_pred HHHHHhCC
Q 018949 276 DWILTKLP 283 (348)
Q Consensus 276 ~~i~~~l~ 283 (348)
+++.+.++
T Consensus 154 ~~l~~~l~ 161 (161)
T 2dyk_A 154 EAIWERLP 161 (161)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 99998763
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-23 Score=175.35 Aligned_cols=166 Identities=30% Similarity=0.380 Sum_probs=120.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh----hhHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH----MLDSMMMKN 188 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~l~~~~~~~ 188 (348)
...++|+++|.+|||||||+|++++.......+.+++|........ +..+.+|||||+...... .....+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3456999999999999999999999887667777887776554433 245899999996432111 111112233
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHH---HHHhcCCCCeEEEecC
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE---WYEKFTDVDEVIPVSA 265 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~---~~~~~~~~~~i~~vSA 265 (348)
+......+|++++|+|++.........+...+.. .+.|+++|+||+|+.+..+...... ......+..+++++||
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSS 175 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCT
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEec
Confidence 3344566799999999988776666666666666 5799999999999987654433332 3333334568999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
++|.|+++++++|.+.+.
T Consensus 176 ~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 176 VTGEGISELLDLISTLLK 193 (195)
T ss_dssp TTCTTHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998765
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-24 Score=209.44 Aligned_cols=211 Identities=25% Similarity=0.291 Sum_probs=137.3
Q ss_pred hhhhccccCCCCccCCcCCccccccccCCCCCC-CCCCChhhhhhccccCCCCCCccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 61 WSNQREMDLDDGDEMEFDDASSFLSLSEKPDRN-MASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 61 ~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
..+.+|+.+||.|+.+..+...+.......... ............. ....+|+++|++|||||||+|+|++..
T Consensus 175 ~~a~iEa~iDf~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~------r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 175 ILAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELL------RTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHHHHHHHTTSSSSSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH------HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh------cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 455678889998766665554443322211110 0111111111111 023479999999999999999999988
Q ss_pred eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHh
Q 018949 140 LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEG 219 (348)
Q Consensus 140 ~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~ 219 (348)
+..++..+++|++.....+..++.++.+|||||+.+ ..........+.+..++..+|++++|+|++++.......+...
T Consensus 249 ~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~ 327 (462)
T 3geh_A 249 RAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE-TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQ 327 (462)
T ss_dssp BSCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred cccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc-chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHh
Confidence 877888999998887767777889999999999743 2233444455667778899999999999998877766666655
Q ss_pred cccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 018949 220 VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (348)
Q Consensus 220 ~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (348)
+. ..|+++|+||+|+....... .........+++++||++|.|+++|+++|.+.+....
T Consensus 328 l~----~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 328 VK----HRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp HT----TSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred cc----CCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 53 37999999999998765432 1111223457999999999999999999999886543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=204.68 Aligned_cols=165 Identities=25% Similarity=0.307 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|.||||||||+|+|++.+...+++.+++|++.....+.+++..+.+|||||+.......+...+...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 37999999999999999999999887789999999999888888888999999999975433333445566677788999
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
||++++|+|++.+....+.++..+++. .++|+++|+||+|+..... ......+. ..+..+++++||++|.|+++|+
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~-~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~ 157 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFE-REVKPELY-SLGFGEPIPVSAEHNINLDTML 157 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHH-HHTHHHHG-GGSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccH-HHHHHHHH-hcCCCCEEEEeccCCCCHHHHH
Confidence 999999999998887777777777765 5799999999999853211 11102222 2344467999999999999999
Q ss_pred HHHHHhCCC
Q 018949 276 DWILTKLPL 284 (348)
Q Consensus 276 ~~i~~~l~~ 284 (348)
+.|.+.++.
T Consensus 158 ~~i~~~l~~ 166 (439)
T 1mky_A 158 ETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhccc
Confidence 999887753
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-23 Score=175.94 Aligned_cols=166 Identities=23% Similarity=0.280 Sum_probs=109.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh-hHHHH---HH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM-LDSMM---MK 187 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-l~~~~---~~ 187 (348)
.+..+|+++|.+|+|||||+|+|++.. .....+.+++|......... ..+.+|||||+....... ....+ ..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN---DELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET---TTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC---CcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 355699999999999999999999987 34456677777665444332 369999999975321110 01111 22
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEec
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVS 264 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vS 264 (348)
.+......+|++++|+|++++.......+...+.. .+.|+++|+||+|+....+.......+.. .....+++++|
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 22233345599999999998776666556666655 68999999999999887655443333332 22345899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 018949 265 AKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (348)
|++|.|+++++++|.+.++
T Consensus 176 a~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 176 SETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhc
Confidence 9999999999999987653
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-24 Score=199.24 Aligned_cols=203 Identities=18% Similarity=0.241 Sum_probs=138.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCcee-----eecCCCC----------------------ceEEe------------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRHR------------ 153 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~-----~~~~~~~----------------------~t~~~------------ 153 (348)
...++|+++|.+|||||||+|+|++.++. .++..|+ +|...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 34569999999999999999999998864 3344443 22210
Q ss_pred ------------EEEEEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhccCccEEE-EEecCCCCCchHHH-H
Q 018949 154 ------------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIV-VLVDACKAPERIDE-I 215 (348)
Q Consensus 154 ------------~~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~~ad~iv-~VvD~~~~~~~~~~-~ 215 (348)
...+.......+.+|||||+.+.. .......+...+..++..++.++ +|+|++.+...... .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000111123679999999986421 12233344455666777887666 79999877654442 3
Q ss_pred HHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCC
Q 018949 216 LEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289 (348)
Q Consensus 216 ~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~ 289 (348)
+...+.. .+.|+++|+||+|+..... .... +.... +..+++++||++|.|+++++++|.+ ..++.+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~---~~~~~~ 255 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFL 255 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHH---HTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH---HHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHH---HhCCcCcCCCCcEEEECCChhhccccccHHHHHHH---HHHHHh
Confidence 5555554 6789999999999986433 2222 22211 2347889999999999999999987 334455
Q ss_pred CCcccCCCchH---HHHHHHHHHHHHhhccCCCCceE
Q 018949 290 PKDIVSEHPER---FFVGEIIREKIFMQYRNEVPYAC 323 (348)
Q Consensus 290 ~~~~~~~~~~~---~~~~e~ire~~~~~~~~eip~~~ 323 (348)
+.+..++.+.+ +++.+.++++++..+++++||..
T Consensus 256 ~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~ 292 (299)
T 2aka_B 256 SHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 292 (299)
T ss_dssp HCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55666666666 78999999999999999999854
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=179.08 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=112.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|.+|||||||+|+|++..+. +...+++|.......+...+..+.+|||||+.+................+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 35669999999999999999999999876 56778888877777777777899999999974321111111111122234
Q ss_pred ccCccEEEEEecCCCCCc---hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH----HHHHHHHHhcCC-CCeEEEec
Q 018949 193 GINADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKFTD-VDEVIPVS 264 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~---~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~~~~~~~~~~-~~~i~~vS 264 (348)
+..+|++|+|+|+++... .....+...+.....+.|+++|+||+|+.....+ ......+....+ ..++++||
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 185 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFS 185 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 678899999999987643 1122333333332247999999999999764322 122333333332 25899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 018949 265 AKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (348)
|++|.|+++++++|.+.+.
T Consensus 186 A~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 186 TLTGVGVEQAKITACELLK 204 (228)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-23 Score=176.08 Aligned_cols=162 Identities=24% Similarity=0.298 Sum_probs=115.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|.+|||||||+|+|.+.....++..+++|.......+..++..+.+|||||+... ..............++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA-SDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC-SSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc-hhHHHHHHHHHHHHHHH
Confidence 34899999999999999999999876656788888888777777777788999999997432 12222222333445678
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcc-cccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVG-DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
.+|++++|+|+++........+...+. ....++|+++|+||+|+..... .... ....+++++||++|.|+++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------~~~~-~~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------GMSE-VNGHALIRLSARTGEGVDV 155 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------EEEE-ETTEEEEECCTTTCTTHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------hhhh-ccCCceEEEeCCCCCCHHH
Confidence 999999999998765332222333222 2224799999999999853210 0001 1234789999999999999
Q ss_pred HHHHHHHhCCC
Q 018949 274 IRDWILTKLPL 284 (348)
Q Consensus 274 L~~~i~~~l~~ 284 (348)
++++|.+.+..
T Consensus 156 l~~~l~~~~~~ 166 (172)
T 2gj8_A 156 LRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhh
Confidence 99999988753
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-23 Score=186.37 Aligned_cols=158 Identities=24% Similarity=0.331 Sum_probs=116.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh----hhHHHHHHHHHhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH----MLDSMMMKNVRSA 192 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~l~~~~~~~~~~~ 192 (348)
+|+++|.+|||||||+|+|+|.+.. +...+++|.+.....+..++..+.+|||||+...... .....+...+. .
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~-v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~-~ 80 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV-I 80 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH-h
Confidence 7999999999999999999998754 6788999999888888888889999999997543221 33332322221 1
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
...+|++|+|+|+++.. ....+...+.. .+.|+++|+||+|+............+....+ .+++++||++|.|++
T Consensus 81 ~~~~d~vi~VvDas~~~--~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~ 155 (256)
T 3iby_A 81 DLEYDCIINVIDACHLE--RHLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-CSVIPIQAHKNIGIP 155 (256)
T ss_dssp HSCCSEEEEEEEGGGHH--HHHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-SCEEECBGGGTBSHH
T ss_pred hCCCCEEEEEeeCCCch--hHHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-CCEEEEECCCCCCHH
Confidence 27899999999998732 22334444455 57999999999998654322111222333334 489999999999999
Q ss_pred HHHHHHHHh
Q 018949 273 DIRDWILTK 281 (348)
Q Consensus 273 eL~~~i~~~ 281 (348)
+|+++|.+.
T Consensus 156 el~~~i~~~ 164 (256)
T 3iby_A 156 ALQQSLLHC 164 (256)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999999988
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-23 Score=181.38 Aligned_cols=163 Identities=20% Similarity=0.198 Sum_probs=109.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+.+..||+++|.+|||||||+++++...+... .++.+..............+.+.+|||+| ++.+..+..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaG--qe~~~~l~~------- 80 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG--LERFRSLIP------- 80 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSC--TTTCGGGHH-------
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCC--chhhhhHHH-------
Confidence 34566999999999999999999998776421 12222222222333445567899999999 556665543
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.+++.++++++|+|.++.. .....|+.........+.|++||+||+|+...+.+ .+....+....+ .++++|||++
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-~~~~e~SAkt 159 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-VMFIETSAKA 159 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEEBTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-CeeEEEeCCC
Confidence 4478999999999998644 45555655554444478999999999999754322 112233333334 3799999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.||+++|+.|.+.+..
T Consensus 160 g~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 160 GYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TBSHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998864
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-23 Score=172.14 Aligned_cols=161 Identities=22% Similarity=0.226 Sum_probs=102.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|+|.+..+....+.++++.......++.....+.+|||||.....+..+ ...++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~ 75 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS-------QESCL 75 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHH-------HHHTT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhh-------HHhhc
Confidence 34589999999999999999999988776666667665544444444456899999999533112222 23457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFD-CKFIETSATLQH 154 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT-SEEEECBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcC-CeEEEEecCCCC
Confidence 8899999999998643 23333333332211 247999999999999754322 111122222223 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 155 NVAELFEGVVRQL 167 (175)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=170.00 Aligned_cols=163 Identities=16% Similarity=0.190 Sum_probs=110.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+..+....++.+.+. ..+..++..+.+|||||.. .+..+ ...++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 81 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQE--SLRSS-------WNTYY 81 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEETTEEEEEEECCC------CGG-------GHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEECCEEEEEEECCCCH--hHHHH-------HHHHh
Confidence 45699999999999999999999877654444444332 2233467899999999953 33333 23446
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.......+....+... ....+++++||++
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 8999999999998764 44445555554431 2579999999999998643333333333221 1224789999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCC
Q 018949 268 GHGVEDIRDWILTKLPLGPAYY 289 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~ 289 (348)
|.|+++++++|.+.+...++..
T Consensus 162 g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp TBTHHHHHHHHHHHHCC-----
T ss_pred CcCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999887655433
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=174.15 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=105.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||++++.+.++....++.+.+ ...+..++..+.+|||||. ..+..+ +..++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 90 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGH--IQARRV-------WKNYL 90 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC------CCG-------GGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCc--HhhHHH-------HHHHH
Confidence 5568999999999999999999988765443443333 2344556689999999994 333322 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHhc---------------C
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---------------T 255 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---------------~ 255 (348)
..+|++++|+|+++.. .....++...+.. ...+.|+++|+||+|+......++....+... .
T Consensus 91 ~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 91 PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccC
Confidence 8999999999998754 3344455544432 12679999999999997532233333333211 1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
...++++|||++|.|+++++++|.+.+
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 335799999999999999999998765
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=183.51 Aligned_cols=163 Identities=23% Similarity=0.270 Sum_probs=117.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|+|++.... +...+++|.......+...+..+.+|||||+...........+...+.. .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-K 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-H
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-h
Confidence 4558999999999999999999998876 6788899998888888888899999999997543322222222222211 1
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
..+|++++|+|+++.... .. +...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++
T Consensus 82 ~~~d~ii~V~D~t~~~~~-~~-~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQS-LY-LLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-IPVVFTSSVTGEGLEE 156 (258)
T ss_dssp SCCSEEEEEEETTSCHHH-HH-HHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-SCEEECCTTTCTTHHH
T ss_pred cCCCEEEEEeCCCchhhH-HH-HHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcC-CCEEEEEeeCCcCHHH
Confidence 689999999999874332 22 3333344 57999999999998643221111222333333 4899999999999999
Q ss_pred HHHHHHHhCC
Q 018949 274 IRDWILTKLP 283 (348)
Q Consensus 274 L~~~i~~~l~ 283 (348)
|++++.+.+.
T Consensus 157 l~~~i~~~~~ 166 (258)
T 3a1s_A 157 LKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-23 Score=172.50 Aligned_cols=162 Identities=28% Similarity=0.352 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|++|||||||+|++.+..+. +...+++|.......+..++..+.+|||||+...........+...+.. ..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH-HH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh-cC
Confidence 358999999999999999999987654 4556677766666666666789999999996442211111111111111 13
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
.+|++++|+|+++. .....++ ..+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|++++
T Consensus 81 ~~~~~i~v~D~~~~-~~~~~~~-~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 81 KPDLVVNIVDATAL-ERNLYLT-LQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp CCSEEEEEEETTCH-HHHHHHH-HHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSHHHH
T ss_pred CCCEEEEEecCCch-hHhHHHH-HHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhC-CCEEEEEcCCCCCHHHH
Confidence 79999999999763 2222233 33333 57999999999998543211101122222223 47999999999999999
Q ss_pred HHHHHHhCC
Q 018949 275 RDWILTKLP 283 (348)
Q Consensus 275 ~~~i~~~l~ 283 (348)
+++|.+.+.
T Consensus 156 ~~~l~~~~~ 164 (165)
T 2wji_A 156 KKAISIAVK 164 (165)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999988763
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=173.16 Aligned_cols=163 Identities=19% Similarity=0.238 Sum_probs=112.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|+|||||+|++++..+. ...++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 92 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ--ERFHSL-------APMY 92 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS--GGGGGG-------THHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc--hhhHhh-------hHHh
Confidence 4558999999999999999999987753 23455555555554455556788999999994 333333 2244
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIG-AIVVETSAKNAI 171 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTT-CEEEECBTTTTB
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCc
Confidence 68999999999998754 22223333222221257999999999999743221 122333333344 489999999999
Q ss_pred CHHHHHHHHHHhCCCCC
Q 018949 270 GVEDIRDWILTKLPLGP 286 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~ 286 (348)
|+++++++|.+.+...+
T Consensus 172 gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 172 NIEELFQGISRQIPPLD 188 (192)
T ss_dssp SHHHHHHHHHHTCC---
T ss_pred CHHHHHHHHHHHHHhhC
Confidence 99999999999886543
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=169.87 Aligned_cols=156 Identities=24% Similarity=0.273 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.+|||||||+|++.+.......+.++++... ...+......+.+|||||. ..+..+ ...++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~--~~~~~~-------~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR-SIVVDGEEASLMVYDIWEQ--DGGRWL-------PGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEE-EEEETTEEEEEEEEECC------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-EEEECCEEEEEEEEECCCC--ccchhh-------hhhhhhh
Confidence 48999999999999999999998876666777776643 3344555678999999994 333322 3344789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
+|++++|+|.++.. .....++....... ..+.|+++|+||+|+.+...+ ......+....+ .+++++||++|.|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNV 151 (166)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-CEEEECBGGGTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-CcEEEeccCCCCCH
Confidence 99999999998654 33333444333221 257999999999999754322 122233333344 48999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
++++++|.+.+
T Consensus 152 ~~l~~~l~~~~ 162 (166)
T 3q72_A 152 QALFEGVVRQI 162 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=167.64 Aligned_cols=158 Identities=17% Similarity=0.162 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++.+..+. .....++....... +......+.+|||||.. .+..+. ..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~~-------~~ 70 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE--QFTAMR-------DL 70 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSC--SSTTHH-------HH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChH--HHHHHH-------HH
Confidence 3458999999999999999999987654 23333433333333 33445689999999953 333332 23
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+...... .+....+....+..+++++||++
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCC
Confidence 356799999999998643 22233333222211 257999999999999754321 12223333334345899999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|+++++++|.+.+
T Consensus 151 ~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 151 KINVNEIFYDLVRQI 165 (167)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=167.06 Aligned_cols=158 Identities=23% Similarity=0.327 Sum_probs=110.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+..+....++.+.+. ..+..++..+.+|||||. ..+.. .+..++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~ 81 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI----KSVQSQGFKLNVWDIGGQ--RKIRP-------YWRSYF 81 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE----EEEEETTEEEEEEECSSC--GGGHH-------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE----EEEEECCEEEEEEECCCC--HHHHH-------HHHHHh
Confidence 55699999999999999999999987655555555332 223445789999999995 33222 234557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+.. .....++++|||++
T Consensus 82 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 82 ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCC
Confidence 8999999999998754 33344555554432 267999999999999865433333222221 11234789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 162 g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-23 Score=190.28 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=124.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCC-ceEEeEEEEEeCCCeeEEEEeCCCCchhhhh--hhHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIH--MLDSMMMKNV 189 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~l~~~~~~~~ 189 (348)
.+..+|+|+|++|||||||+|+|++.........+. +|.......+..++..+.+|||||+.+.... .....+...+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 355699999999999999999999988554444444 6777777777778899999999997653211 1112234445
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccc-c--CCCCEEEEEe-ccCCCChhhHHHH--------HH-HHHhcCC
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLN-KKDLIKPGEIAKK--------LE-WYEKFTD 256 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~-~--~~~p~ivv~N-K~Dl~~~~~~~~~--------~~-~~~~~~~ 256 (348)
..+++.+|++|+|+|++. .......+...+... + ...|.++|+| |+|+.... +... .. .+.....
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTT
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCC
Confidence 567899999999999985 544444444443331 1 1467777777 99998532 2221 11 2222221
Q ss_pred ----CCeEEEecCCCCCCHHHHHHHHHHhCCCCC-CCCCCcccCCCch
Q 018949 257 ----VDEVIPVSAKYGHGVEDIRDWILTKLPLGP-AYYPKDIVSEHPE 299 (348)
Q Consensus 257 ----~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~-~~~~~~~~~~~~~ 299 (348)
+.+ +++||++|.|+++++++|.+.+...+ +.|+.+..++.+.
T Consensus 178 ~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T 2xtp_A 178 RICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224 (260)
T ss_dssp CEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred eEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 222 88999999999999999999887666 6777665555554
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=168.29 Aligned_cols=161 Identities=20% Similarity=0.187 Sum_probs=109.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|+|||||+|++++..+... .++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~ 75 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ--ERYHSL-------APMY 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc--HHhhhh-------hHHh
Confidence 345899999999999999999998765422 233333333333334445678999999995 333333 3344
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|++++. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 154 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNS-LLFMETSAKTSM 154 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 78999999999998753 33334444443332367899999999998643221 111222222333 489999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 018949 270 GVEDIRDWILTKLPL 284 (348)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (348)
|+++++++|.+.+..
T Consensus 155 gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 155 NVNEIFMAIAKKLPK 169 (170)
T ss_dssp THHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988753
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-22 Score=171.34 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=109.2
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeee--cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
+.....+|+++|.+|||||||+++|++..+..+ .++.+ .....+...+..+.+|||||.. .+..+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~--~~~~~------- 79 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETFEKGRVAFTVFDMGGAK--KFRGL------- 79 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEEEETTEEEEEEEECCSG--GGGGG-------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEEEeCCEEEEEEECCCCH--hHHHH-------
Confidence 344566999999999999999999999887643 23333 2233346778899999999953 33332
Q ss_pred HHhhccCccEEEEEecCCCCC--chHHHHHHHhccccc--------CCCCEEEEEeccCCCChhhHHHHHHHHH---h-c
Q 018949 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK--------DKLPILLVLNKKDLIKPGEIAKKLEWYE---K-F 254 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~-~ 254 (348)
...++..+|++|+|+|+++.. .....++...+.... .+.|+++|+||+|+.......+....+. . .
T Consensus 80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (199)
T 4bas_A 80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMG 159 (199)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHT
T ss_pred HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhcc
Confidence 235578999999999998764 344455555443311 2799999999999987633322222221 1 2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 255 TDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 255 ~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
....++++|||++|.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 160 DHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp TSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred CCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 23358999999999999999999988764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=166.99 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=110.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|+|||||+|++.+..+.. ..++.+.+.......+......+.+|||||+. .+..+ ...+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~ 75 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE--RFRAL-------APMY 75 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch--hhhcc-------cHhh
Confidence 44589999999999999999999877532 23444444444444444556789999999953 33332 2334
Q ss_pred ccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|++++.. ....++...........|+++|+||+|+....+. .+....+....+ .+++++||++|.
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAI 154 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-CEEEEEeCCCCc
Confidence 689999999999987542 2222332222222367899999999999754322 222333333334 489999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 018949 270 GVEDIRDWILTKLPL 284 (348)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (348)
|+++++++|.+.+..
T Consensus 155 ~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 155 NINELFIEISRRIPS 169 (170)
T ss_dssp SHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988753
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-22 Score=168.12 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|+|||||+|++++..+.... ++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 81 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ--ERYHSL-------APMY 81 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS--GGGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------hHHH
Confidence 4568999999999999999999987754221 22233333333333444578999999994 333333 2334
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 160 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENG-LFFMETSAKTAT 160 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEECCSSSCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence 68899999999998654 22333333333322257899999999999754321 122223333333 389999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 018949 270 GVEDIRDWILTKLPL 284 (348)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (348)
|+++++++|.+.+..
T Consensus 161 gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 161 NVKEIFYEIARRLPR 175 (181)
T ss_dssp THHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998865
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-23 Score=199.71 Aligned_cols=162 Identities=28% Similarity=0.363 Sum_probs=114.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|.+|||||||+|+|++.....+.+++++|++.....+.+.+..+.+|||||+.... ..+...+...+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD-EPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc-hhHHHHHHHHHHHHHHh
Confidence 48999999999999999999999888889999999999888888888999999999974322 22445566667778899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
||++|+|+|++.+....+.++...++. .++|+++|+||+|+..... .. ..+. ..+..+++++||++|.|+++|+
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~-~~~~-~lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NI-YDFY-SLGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CC-CSSG-GGSSCCCEECBTTTTBTHHHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hH-HHHH-HcCCCCeEEEeCcCCCChHHHH
Confidence 999999999999888777888887776 7899999999999875321 00 1111 1233468999999999999999
Q ss_pred HHHHHhCCC
Q 018949 276 DWILTKLPL 284 (348)
Q Consensus 276 ~~i~~~l~~ 284 (348)
+++.+.++.
T Consensus 157 ~~i~~~l~~ 165 (436)
T 2hjg_A 157 DAVAEHFKN 165 (436)
T ss_dssp HHHHHTGGG
T ss_pred HHHHHhcCc
Confidence 999998864
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-22 Score=169.81 Aligned_cols=156 Identities=21% Similarity=0.196 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||++++.+..+....++.+.+ ...+..++..+.+|||||... +..+ ...++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~~~ 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----SEELAIGNIKFTTFDLGGHIQ--ARRL-------WKDYF 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE----EEEEEETTEEEEEEECCCSGG--GTTS-------GGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC----eEEEEECCEEEEEEECCCCHH--HHHH-------HHHHH
Confidence 4458999999999999999999987765433333332 334455678999999999533 3222 23457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc----------CCCCeE
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEV 260 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~i 260 (348)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+......++....+... ....++
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEE
Confidence 8999999999998764 33444444444321 2679999999999997633333333332221 133479
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (348)
++|||++|.|+++++++|.+.+
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEeECCcCCCHHHHHHHHHhhC
Confidence 9999999999999999998653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-22 Score=167.89 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=109.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|.+|||||||+|+|.+..+....++.+.+.. .+..++..+.+|||||.. .+..+ ...+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 85 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQE--SLRSS-------WNTY 85 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSSG--GGTCG-------GGGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCCH--hHHHH-------HHHH
Confidence 4556999999999999999999999887555566654432 233466899999999953 33322 2355
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAK 266 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~ 266 (348)
+..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||+
T Consensus 86 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 165 (181)
T 2h17_A 86 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 165 (181)
T ss_dssp GTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCC
Confidence 78999999999998763 44444555554431 267999999999999764322222222211 1122378999999
Q ss_pred CCCCHHHHHHHHHHh
Q 018949 267 YGHGVEDIRDWILTK 281 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~ 281 (348)
+|.|+++++++|.+.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-23 Score=186.31 Aligned_cols=165 Identities=26% Similarity=0.299 Sum_probs=119.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh----hhhHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNV 189 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~l~~~~~~~~ 189 (348)
+..+|+++|.+|||||||+|+|++... .++..+++|.......+...+..+.+|||||+.+... ..+.......
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~- 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH- 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH-
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH-
Confidence 345899999999999999999999885 4788999999988888888888999999999754321 1222222222
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
......+|++|+|+|+++.. . ...+...+.. .++|+++|+||+|+............+....+ .+++++||++|.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~-~-~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~i~~SA~~g~ 154 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLE-R-NLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-CPVIPLVSTRGR 154 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHH-H-HHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-SCEEECCCGGGH
T ss_pred HHhhcCCCEEEEEecCCChH-H-HHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-CCEEEEEcCCCC
Confidence 22247999999999998632 2 2223333444 47999999999998643321111222333333 489999999999
Q ss_pred CHHHHHHHHHHhCCCC
Q 018949 270 GVEDIRDWILTKLPLG 285 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~ 285 (348)
|+++|+++|.+.++..
T Consensus 155 gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 155 GIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-22 Score=164.88 Aligned_cols=155 Identities=18% Similarity=0.168 Sum_probs=107.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++.+..+... .| |.......+..++..+.+|||||.. .+.. ....++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~~~~~~ 68 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQD--KIRP-------LWRHYFQNT 68 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC--CC--CSSCCEEEEECSSCEEEEEECCCCG--GGHH-------HHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc--cC--cCceeEEEEEECCEEEEEEEcCCCh--hhHH-------HHHHHhccC
Confidence 799999999999999999988765422 22 2223334456677899999999953 3222 234458999
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~g~g 270 (348)
|++++|+|++++. .....++...+.. ...+.|+++|+||+|+.......+........ ....+++++||++|.|
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999998763 3344455544432 12579999999999997653333332222211 1224789999999999
Q ss_pred HHHHHHHHHHhCCC
Q 018949 271 VEDIRDWILTKLPL 284 (348)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (348)
+++++++|.+.+..
T Consensus 149 i~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 149 LYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=197.54 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=120.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (348)
...+|+++|++|||||||+|++++..+..+++.+++|++.....+..++..+.+|||||+..... ..++.........
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 45699999999999999999999998877889999999988877788888999999999633111 1122222223345
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh--HHHHHHHHHhc---CCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKF---TDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~---~~~~~i~~vSA~ 266 (348)
+++.+|++++|+|++++...++..+...+.. .++|+++|+||+|+..... ..+....+... ....+++++||+
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 331 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 331 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecc
Confidence 6788999999999999887766666666655 6899999999999986432 22233333322 234589999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|++++++.+.+.+..
T Consensus 332 tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 332 TKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999887643
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-22 Score=189.13 Aligned_cols=204 Identities=20% Similarity=0.241 Sum_probs=133.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCce-----eeecCCC---CceEEe--------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVTNKP---QTTRHR-------------------------------- 153 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~-----~~~~~~~---~~t~~~-------------------------------- 153 (348)
..++|+|+|.+|+|||||+|+|+|.++ ..++..| .+++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 455899999999999999999999886 3344444 222210
Q ss_pred ------E-------------EEEEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhccCccEEEEEecCC-CCC
Q 018949 154 ------I-------------LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDAC-KAP 209 (348)
Q Consensus 154 ------~-------------~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~~ad~iv~VvD~~-~~~ 209 (348)
. ..+....+..+.+|||||+.+.. ...+...+...+..++..+|++++|+|++ .+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0 00123345689999999985422 12344556677788899999999999974 443
Q ss_pred c-hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC--CeEEEe---cCCC---CCCHHHHHHHHHH
Q 018949 210 E-RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV--DEVIPV---SAKY---GHGVEDIRDWILT 280 (348)
Q Consensus 210 ~-~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~i~~v---SA~~---g~gi~eL~~~i~~ 280 (348)
. .....+...+.. .+.|+++|+||+|+...... ....+...... .+++++ ||.+ +.|+.++++.+.+
T Consensus 183 ~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 183 ANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp TTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 3 222345555555 67999999999999864431 11222221111 234444 5555 7899999999999
Q ss_pred hCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEE
Q 018949 281 KLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQ 324 (348)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~ 324 (348)
.++..++ |+ +..++.+.++... .+|++++..+++++||...
T Consensus 259 ~~~~~~~-~~-~~~~~~~~~~l~~-~lre~l~~~~~~elP~~~~ 299 (315)
T 1jwy_B 259 YFKNHPI-YK-SIANRSGTAYLSK-TLNKLLMFHIRDTLPDLKV 299 (315)
T ss_dssp HHHTCTT-GG-GSGGGCSHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCc-cc-cchhccCHHHHHH-HHHHHHHHHHHHHhHHHHH
Confidence 9887776 44 4555666666555 5999999999999998543
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-22 Score=167.38 Aligned_cols=159 Identities=21% Similarity=0.188 Sum_probs=106.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+|+++|.+|+|||||+|++++..+.. ..+..+.+.......+......+.+|||||. ..+..+ ...++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~~ 73 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ--ERFASL-------APXYY 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCC--hhhhhh-------hhhhh
Confidence 3589999999999999999999877542 1233333333333334444568999999994 333333 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh---hhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---GEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~---~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++. .....++.........+.|+++|+||+|+... ..+ ......+....+ .+++++||++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKT 152 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 8999999999998753 23333333333332367999999999998643 111 112222222223 3899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIP 168 (170)
T ss_dssp CTTHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998774
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=164.94 Aligned_cols=157 Identities=16% Similarity=0.223 Sum_probs=109.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|+|||||+|++.+..+....++.+ .....+..++..+.+|||||.. .+..+ +..++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~ 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGLT--SIRPY-------WRCYY 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS----EEEEEEEETTEEEEEEEECCCG--GGGGG-------GGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc----cceEEEEECCEEEEEEECCCCh--hhhHH-------HHHHh
Confidence 45689999999999999999998877642222222 2233445567899999999953 33322 33557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 73 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATK 152 (171)
T ss_dssp TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCC
Confidence 8999999999998764 44445555554432 257999999999999875333333333321 11223799999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 153 GTGLDEAMEWLVETLK 168 (171)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999988764
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-22 Score=169.20 Aligned_cols=162 Identities=19% Similarity=0.150 Sum_probs=109.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. .....++...... .+......+.+|||||.. .+..+ ...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 72 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE--DYDRL-------RPL 72 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG--GGTTT-------GGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCH--hHHHH-------HHH
Confidence 4568999999999999999999977653 2233333332222 233445678899999953 33322 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (348)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 578999999999998754 222223333333322489999999999997543211 11222333345
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (348)
..+++++||++|.|+++++++|.+.+...+
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 458999999999999999999999886644
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=166.12 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=105.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||+|++++..+.. ...+..+.......+..+ ...+.+|||||.. .+.. ....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE--RFRS-------LRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCG--GGHH-------HHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCch--hhhh-------hHHH
Confidence 44589999999999999999999876542 222333333333333333 4689999999943 3222 2345
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.......+....+.......+++++||
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 155 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSA 155 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeC
Confidence 678999999999998754 22223332222111 157899999999999743222222333333233458999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
++|.|+++++++|.+.+.
T Consensus 156 ~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 156 KDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.8e-23 Score=199.69 Aligned_cols=161 Identities=24% Similarity=0.320 Sum_probs=122.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.||||||||+|+|++.++..+++.++||++.....+..++..+.+|||||+...............+..++..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 48999999999999999999998877789999999998888888889999999999975122222222223345566789
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++|+|+|++++.......+.+.+ .++|+++|+||+|+.......+... +. ....+++++||++|.|+++|+
T Consensus 324 aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~-~~--~~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKN-KL--GTDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHH-HH--TCSTTEEEEEGGGTCCHHHHH
T ss_pred ccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHH-Hh--cCCCcEEEEECCCCCCHHHHH
Confidence 9999999999887655444444443 4689999999999975422222222 11 122479999999999999999
Q ss_pred HHHHHhCC
Q 018949 276 DWILTKLP 283 (348)
Q Consensus 276 ~~i~~~l~ 283 (348)
++|.+.+.
T Consensus 397 ~~l~~~~~ 404 (482)
T 1xzp_A 397 ESIYRETQ 404 (482)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHh
Confidence 99998764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-22 Score=169.89 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=106.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+. ....+..+.......+...+ ..+.+|||||. ..+..+ ...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 77 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ--ERFRTI-------TST 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG--GGCSSC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCc--hhhhhh-------HHH
Confidence 4558999999999999999999998765 34445555555444444444 78999999994 333322 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|++++. .....++... .....+.|+++|+||+|+....... .....+....+ .+++++||++|
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 155 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG-IQLFETSAKEN 155 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHH-HHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CCEEECBTTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 578999999999998754 2222333333 2223679999999999987543211 11222222223 37999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|+++++++|.+.+
T Consensus 156 ~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 156 VNVEEMFNCITELV 169 (181)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=166.59 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=108.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+..+.. ....|... ....+...+..+.+|||||. ..+..+ +..++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 88 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE--DMIPTVGF-NMRKITKGNVTIKLWDIGGQ--PRFRSM-------WERYC 88 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCSE-EEEEEEETTEEEEEEEECCS--HHHHTT-------HHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCCCce-eEEEEEeCCEEEEEEECCCC--HhHHHH-------HHHHH
Confidence 44589999999999999999999877642 11112111 12234567889999999995 332222 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+... ....++++|||++
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 8999999999998653 33444555554432 2679999999999998643333332322211 1234789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 169 g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CTTHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-22 Score=169.04 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=106.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+. ...++++.......+. .....+.+|||||. ..+..+.. .
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAMRD-------Q 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-----CTTHH-------H
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCc--HHHHHHHH-------H
Confidence 3458999999999999999999987754 3444454444443333 33456888999994 33333322 3
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.......+....+....+ .+++++||++|
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 150 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTR 150 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 466799999999998653 22233333222211 257999999999999754322233333333333 37999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 151 ~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 151 QGVDDAFYTLVREIR 165 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=168.13 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=110.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+....... .. .|.......+..++..+.+|||||.. .+..+ +..++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 88 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-IL-PTIGFSIEKFKSSSLSFTVFDMSGQG--RYRNL-------WEHYY 88 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CC-CCSSEEEEEEECSSCEEEEEEECCST--TTGGG-------GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cC-CccceeEEEEEECCEEEEEEECCCCH--HHHHH-------HHHHH
Confidence 4569999999999999999999988732222 22 22233444556667899999999953 33322 23557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccccc---CCCCEEEEEeccCCCChhhHHHHHHHHH-hc--CCCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYE-KF--TDVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~--~~~~~i~~vSA 265 (348)
..+|++++|+|+++.. .....++...+.... .+.|+++|+||+|+.......+....+. .. ....+++++||
T Consensus 89 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 89 KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccC
Confidence 8999999999998753 344445555444322 4789999999999986543333333332 11 12347999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
++|.|+++++++|.+.+..
T Consensus 169 ~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTBTHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988753
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-22 Score=169.27 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=109.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||+|+|++..+.. ...+.++.......+..++ ..+.+|||||. ..+..+ ...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 84 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 84 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGCTT-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCc--Hhhhhh-------HHH
Confidence 34589999999999999999999877652 3344444444444444343 67999999994 333333 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+....... .....+....+ .+++++||++|
T Consensus 85 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 163 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 163 (196)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEEECTTTC
T ss_pred HHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 478999999999998743 233333333322223578999999999997643221 22233333444 38999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 164 ~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-23 Score=180.57 Aligned_cols=164 Identities=19% Similarity=0.222 Sum_probs=115.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.+..+|+++|.+|||||||+|+++... .....++.+++.......+......+.+|||||. ..+..+.. .
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~ 83 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ--EKFGGLRD-------G 83 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG--GGTSCCCH-------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh--HHHhHHHH-------H
Confidence 355699999999999999999965443 3445677888888777777777788999999994 44443322 3
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++..+|++++|+|+++.. .....++...... ..+.|+++|+||+|+............. ...+ .++++|||++|.
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~~~-~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFH-RKKN-LQYYDISAKSNY 160 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCGGGCCHH-HHHT-CEEEECBGGGTB
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccccHHHHHHH-HHcC-CEEEEEeCCCCC
Confidence 467999999999998754 2233333333322 2579999999999997543211111111 1122 389999999999
Q ss_pred CHHHHHHHHHHhCCCCCCC
Q 018949 270 GVEDIRDWILTKLPLGPAY 288 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~ 288 (348)
|+++++++|.+.+...++.
T Consensus 161 gi~~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 161 NFEKPFLWLARKLIGDPNL 179 (221)
T ss_dssp TTTHHHHHHHHHHHTCTTC
T ss_pred CHHHHHHHHHHHHHhCccc
Confidence 9999999999887655443
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=169.12 Aligned_cols=161 Identities=19% Similarity=0.140 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+......+.++.......+. .....+.+|||||.. .+. ..+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~-------~~~~~ 79 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE--RFR-------SVTHA 79 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH--HHH-------HHHHH
Confidence 4558999999999999999999988765333344444443333333 334589999999942 222 23456
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|++++. .....++.........+.|+++|+||+|+.....+ ......+....+ .+++++||++|
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 158 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTG 158 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 678999999999998754 22233333332222257899999999999753221 111222222223 37999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++++++|.+.+..
T Consensus 159 ~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 159 LNVDLAFTAIAKELKR 174 (180)
T ss_dssp TTHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887643
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-22 Score=195.69 Aligned_cols=170 Identities=20% Similarity=0.241 Sum_probs=126.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~ 190 (348)
....+|+++|.+|+|||||+|++++.....++..+++|++.....+..++..+.+|||||+..... ...+........
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 345699999999999999999999988777889999999987777777888999999999743210 112222223344
Q ss_pred hhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHHHhc---CCCCeEEEecC
Q 018949 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF---TDVDEVIPVSA 265 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~---~~~~~i~~vSA 265 (348)
.+++.+|++|+|+|++.+....+..+...+.. .++|+++|+||+|+.... ..++....+... ....+++++||
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 350 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA 350 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCT
T ss_pred HHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcC
Confidence 56789999999999999888888888887776 789999999999998532 223333333333 34568999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
++|.|++++++.+.+.+..
T Consensus 351 ~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 351 LTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TTCTTGGGHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987643
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-22 Score=168.97 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=109.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+..+. ....+++|.......+..++..+.+|||||.. .+..+ ...++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 76 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHE--AFTTM-------RARGA 76 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSS--SSSCS-------CCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCH--HHHHH-------HHHHH
Confidence 5669999999999999999999998765 23344444444334455567889999999953 33322 22457
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC-------CCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-------DVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~i~~vSA~ 266 (348)
..+|++++|+|++++...........+.. .+.|+++|+||+|+..... ......+.... ...+++++||+
T Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 77 QVTDIVILVVAADDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp CCCCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred hhCCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 88999999999987664444334444444 5799999999999986421 12222222211 11479999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 018949 267 YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+++++++|.+.+.
T Consensus 154 ~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999999987654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-22 Score=167.56 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=106.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||+|++++..+.. ...+..+.......+..+ ...+.+|||||. ..+..+ ...
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~~ 82 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSL-------IPS 82 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------SHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCc--HHHHHH-------HHH
Confidence 45689999999999999999999877642 233344444433333333 368999999994 333333 223
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH--HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|++++. .....++.........+.|+++|+||+|+...... ........ ..+ .+++++||++
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~ 160 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-ELN-VMFIETSAKA 160 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-HHT-CEEEEEBTTT
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHH-HcC-CeEEEEeCCC
Confidence 467899999999998643 33333443333322357999999999999753321 12222222 223 4899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 161 ~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 161 GYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TBSHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987753
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-22 Score=169.63 Aligned_cols=169 Identities=18% Similarity=0.180 Sum_probs=111.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|+|++..+... .++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 84 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ--ERFRTL-------TPSY 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS--GGGCCS-------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc--hhhhhh-------hHHH
Confidence 345899999999999999999998775421 222233333333334445678999999995 333333 2344
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++|+|+|++++. .....++..+.... ..+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHS-MLFIEASAKTCD 163 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcC-CEEEEecCCCCC
Confidence 68999999999998753 23333333333321 157899999999999643211122222333333 479999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCc
Q 018949 270 GVEDIRDWILTKLPLGPAYYPKD 292 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~~~~ 292 (348)
|+++++++|.+.+...++.++.+
T Consensus 164 gi~~l~~~l~~~~~~~~~~~~~~ 186 (195)
T 1x3s_A 164 GVQCAFEELVEKIIQTPGLWESE 186 (195)
T ss_dssp THHHHHHHHHHHHHTSGGGTCC-
T ss_pred CHHHHHHHHHHHHHhhhhhhccc
Confidence 99999999999887655554443
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-22 Score=172.64 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=97.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+.. ....++...... .+......+.+|||||. ..+..+ ...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~ 101 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ--DDYDRL-------RPL 101 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCc--hhhhHH-------HHH
Confidence 45699999999999999999999877642 222333332222 23334467999999994 333322 234
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-------------HHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (348)
++..+|++++|+|+++... .....+...+.....+.|+++|+||+|+.......+ ....+....+
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 181 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG 181 (214)
T ss_dssp ---CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence 5789999999999986542 222223333333335799999999999976543211 1233333445
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
..+++++||++|.|+++++++|.+.+.
T Consensus 182 ~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 182 AVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 558999999999999999999988764
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-22 Score=165.70 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=102.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|+|||||+|++++.++.. ...+..+.......+. .....+.+|||||. ..+..+ +..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~ 72 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ--ERFRTI-------TTAY 72 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------HHHH
Confidence 3489999999999999999999877642 2233333333333333 33468999999994 333333 2334
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+.......+....+....+ .+++++||++|.|
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 151 (170)
T 1g16_A 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDN 151 (170)
T ss_dssp HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT-CCEEECBTTTTBS
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 68999999999998653 22333333333322257899999999999543221222222332233 3799999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
+++++++|.+.+.
T Consensus 152 v~~l~~~l~~~~~ 164 (170)
T 1g16_A 152 VNEIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987663
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-22 Score=172.05 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=110.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++.+..+. .....++.......+. .....+.+|||||. ..+..+ ...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 90 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ--EEYDRL-------RPL 90 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCc--HHHHHH-------hHh
Confidence 4569999999999999999999988753 3344444444333333 33456799999994 333332 334
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChh---hHHHHHHHHHhcCCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
++..+|++++|+|+++... .....+...+.....+.|+++|+||+|+.... ...+....+....+..+++++||+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 5789999999999987542 22233444444433679999999999997521 112223333344455459999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|+++++++|.+.+..
T Consensus 171 ~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TTBSHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=169.88 Aligned_cols=166 Identities=28% Similarity=0.340 Sum_probs=113.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
++..+|+++|++|||||||+|+|.+..+. +...+++|.......+..++..+.+|||||............+...+..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~- 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII- 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh-
Confidence 45679999999999999999999997754 4667888877777777777899999999996432211111111111111
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
...+|++++|+|.++ ...... +...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|++
T Consensus 83 ~~~~~~~i~v~d~~~-~~~~~~-~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 157 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA-LERNLY-LTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGIE 157 (188)
T ss_dssp HHCCSEEEEEEEGGG-HHHHHH-HHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSHH
T ss_pred ccCCCEEEEEecchh-HHHHHH-HHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhC-CCeEEEEecCCCCHH
Confidence 135899999999975 222223 3333333 57899999999998643211111222222223 379999999999999
Q ss_pred HHHHHHHHhCCCC
Q 018949 273 DIRDWILTKLPLG 285 (348)
Q Consensus 273 eL~~~i~~~l~~~ 285 (348)
++++++.+.+...
T Consensus 158 ~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 158 ELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=169.00 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=101.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+... ..+..+.......+ ......+.+|||||. ..+..+ ...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~ 94 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ--ERFNSI-------TSA 94 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCS--GGGHHH-------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCc--HHHHHH-------HHH
Confidence 445899999999999999999998876532 22222223322233 333468999999994 333322 334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++|+|+|+++.. .....++.........+.|+++|+||+|+.....+ .+....+.......+++++||++|
T Consensus 95 ~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 174 (192)
T 2il1_A 95 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDN 174 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 567899999999998754 22222222222212257999999999999754322 122333444433458999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|+++++++|.+.+
T Consensus 175 ~gi~~l~~~l~~~i 188 (192)
T 2il1_A 175 FNVDEIFLKLVDDI 188 (192)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=167.96 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=106.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+..+....+ |.......+..++..+.+|||||. ..+..+ +..++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 94 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNICFTVWDVGGQ--DKIRPL-------WRHYF 94 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-------CTT-------HHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCC----cCceeEEEEEECCEEEEEEECCCC--HhHHHH-------HHHHh
Confidence 55699999999999999999999877653222 222333345567789999999995 333332 23346
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+... ....++++|||++
T Consensus 95 ~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 95 QNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp HTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCC
Confidence 7999999999998764 33444554444321 2579999999999997653333332222211 1224789999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 175 g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 175 GTGLYDGLDWLSHELS 190 (192)
T ss_dssp TBTHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999998774
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=173.15 Aligned_cols=164 Identities=18% Similarity=0.180 Sum_probs=107.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||+|+|++..+... ..+.+.+............ ..+.+|||||. ..+..+.. .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~~~-------~ 80 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ--EKKAVLKD-------V 80 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG--GGTSCCCH-------H
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc--hhhchHHH-------H
Confidence 445899999999999999999998765422 3333333333322222222 67999999994 33333322 3
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++|+|+|+++.. .....++.........+.|+++|+||+|+.....+ ......+....+ .+++++||++|
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 159 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKN-YEYFEISAKTA 159 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCC-CEEEEEBTTTT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CcEEEEecCCC
Confidence 367899999999998754 22333333332222246899999999999865332 222233333333 48999999999
Q ss_pred CCHHHHHHHHHHhCCCCCC
Q 018949 269 HGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~ 287 (348)
.|+++++++|.+.+.....
T Consensus 160 ~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHhcccc
Confidence 9999999999988765433
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=166.75 Aligned_cols=159 Identities=20% Similarity=0.143 Sum_probs=106.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+.. ...+..+.......+..+ ...+.+|||||.. .+. ..+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~ 78 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE--RFR-------SVTRS 78 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG--GGH-------HHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcH--HHH-------HHHHH
Confidence 45689999999999999999999877652 223333333333333333 3689999999953 322 23456
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... ......+....+ .+++++||++|
T Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 157 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENE-LMFLETSALTG 157 (186)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTC
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEecCCCC
Confidence 689999999999998744 22233333222222267999999999999643221 111222223333 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|++++++++.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 158 ENVEEAFVQCARKIL 172 (186)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987663
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=165.93 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=110.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+.......++.+ .....+..++..+.+|||||.. .+. .....++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~--~~~-------~~~~~~~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQK--SLR-------SYWRNYF 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCSH--HHH-------TTGGGGC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCCH--hHH-------HHHHHHh
Confidence 55699999999999999999999877322222222 2223344467899999999953 222 2234568
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 8999999999998764 33334555544431 257999999999999865443333333221 12234799999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 164 ~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=164.37 Aligned_cols=160 Identities=20% Similarity=0.192 Sum_probs=106.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|++.+..+... .++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 84 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ--ERFRAV-------TRSY 84 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG--GGTCHH-------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC--hHhhhh-------HHHH
Confidence 445899999999999999999998775421 122222333333333444578999999994 333322 3345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG-LLFLEASAKTGE 163 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 68999999999998754 22233333222222267899999999999643221 112222323333 489999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|+++++++|.+.+.
T Consensus 164 gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 164 NVEDAFLEAAKKIY 177 (179)
T ss_dssp THHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987653
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=178.92 Aligned_cols=164 Identities=33% Similarity=0.372 Sum_probs=117.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||+|+|+|... .+...+++|.......+...+..+.+|||||+...............+ ...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNF-ILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHH-HHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHh-hhc
Confidence 345899999999999999999999887 477889999988888888888899999999975433322222222221 123
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCC-CCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
..+|++++|+|+++.. ....++.... . .+ .|+++|+||+|+............+....+ .+++++||++|.|++
T Consensus 80 ~~~d~vi~v~D~~~~~-~~~~~~~~~~-~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM-RNLFLTLELF-E--MEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-VPVIPTNAKKGEGVE 154 (271)
T ss_dssp TCCSEEEEEEEGGGHH-HHHHHHHHHH-H--TTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-SCEEECBGGGTBTHH
T ss_pred cCCcEEEEEecCCcch-hhHHHHHHHH-h--cCCCCEEEEEEChhcCcccccHHHHHHHHHHcC-CcEEEEEeCCCCCHH
Confidence 7899999999998742 2222333332 3 34 999999999997643221111223333334 489999999999999
Q ss_pred HHHHHHHHhCCC
Q 018949 273 DIRDWILTKLPL 284 (348)
Q Consensus 273 eL~~~i~~~l~~ 284 (348)
++++.+.+.+..
T Consensus 155 ~l~~~i~~~~~~ 166 (271)
T 3k53_A 155 ELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-22 Score=165.93 Aligned_cols=157 Identities=19% Similarity=0.183 Sum_probs=102.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|++|+|||||+|++.+..+.. ....++....... +......+.+|||||. ..+..+ ...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~ 70 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASM-------RDL 70 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 34589999999999999999999877542 2223332222222 3333456999999994 333332 223
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+....+. ......+....+ .+++++||++
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 149 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG-CPFMETSAKS 149 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SCEEEECTTC
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC-CCEEEecCCC
Confidence 467899999999998743 22333333332221 157999999999998653321 112222222223 3799999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|+++++++|.+.+
T Consensus 150 ~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 150 KTMVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=165.80 Aligned_cols=161 Identities=18% Similarity=0.256 Sum_probs=110.1
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
+..+..+|+++|.+|||||||+|++++..+. ....+++.......+..+ ...+.+|||||. ..+..+..
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~~~----- 75 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQ--EEFGAMRE----- 75 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TTTSCCHH-----
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCc--hhhHHHHH-----
Confidence 3445679999999999999999999987653 445555555444444444 367899999994 33333322
Q ss_pred HHhhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEec
Q 018949 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vS 264 (348)
.++..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.....+ ......+....+ .+++++|
T Consensus 76 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~S 152 (181)
T 2fn4_A 76 --QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEAS 152 (181)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECB
T ss_pred --HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEec
Confidence 3356899999999998743 33333443332221 257899999999999754322 122233333333 4899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 018949 265 AKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (348)
|++|.|+++++++|.+.+.
T Consensus 153 a~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-22 Score=181.98 Aligned_cols=161 Identities=22% Similarity=0.274 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.+|||||||+|+|.+.... +..++++|.....+.+.. +..+.+|||||............+...+.. ...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~ 80 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL-SQR 80 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh-cCC
Confidence 48999999999999999999998643 678889998877777776 788999999996443222222222222211 147
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++++|+|+++.. ... .+...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++++
T Consensus 81 ~d~vi~V~D~t~~e-~~~-~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 81 ADSILNVVDATNLE-RNL-YLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG-VPVVATSALKQTGVDQVV 155 (272)
T ss_dssp CSEEEEEEEGGGHH-HHH-HHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBTTTTBSHHHHH
T ss_pred CCEEEEEecCCchH-hHH-HHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-CCEEEEEccCCCCHHHHH
Confidence 99999999997632 222 23333333 57999999999998643211111122222233 489999999999999999
Q ss_pred HHHHHhCCC
Q 018949 276 DWILTKLPL 284 (348)
Q Consensus 276 ~~i~~~l~~ 284 (348)
++|.+.+..
T Consensus 156 ~~i~~~~~~ 164 (272)
T 3b1v_A 156 KKAAHTTTS 164 (272)
T ss_dssp HHHHHSCTT
T ss_pred HHHHHHHhh
Confidence 999997754
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=168.42 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=107.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. ....+++.......+..+ ...+.+|||||.. .+..+ ...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~-------~~~ 85 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE--DYDRL-------RPL 85 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS--SSTTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCc--chhHH-------HHH
Confidence 4458999999999999999999987653 334444444333334433 4789999999953 33322 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-------------HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++.. ......+...+.....+.|+++|+||+|+...... .+....+....+
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence 578999999999998754 23322333333332358999999999999764211 112222333334
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..+++++||++|.|+++++++|.+.+
T Consensus 166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 166 ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 44799999999999999999998765
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=165.57 Aligned_cols=155 Identities=20% Similarity=0.232 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------------------- 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------- 162 (348)
+..+|+++|.+|||||||+|+|++..+.. ...+.+........+..++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 45689999999999999999999887542 2222222222222333322
Q ss_pred --------eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEE
Q 018949 163 --------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLV 232 (348)
Q Consensus 163 --------~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv 232 (348)
..+.+|||||. ..+..+ ...++..+|++++|+|++++. .....++...... .+.|+++|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~--~~~piilv 153 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQ--ERYASI-------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILV 153 (208)
T ss_dssp CCCTTTCEEEEEEEECTTG--GGCTTT-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--SCCEEEEE
T ss_pred cccCccceeEEEEEECCCc--HHHHHH-------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh--CCCcEEEE
Confidence 78999999994 333332 334578999999999998764 2333344444333 34999999
Q ss_pred EeccCCCChh-hHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 233 LNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 233 ~NK~Dl~~~~-~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
+||+|+.... ...+... +....+ .+++++||++|.|+++++++|.+.+
T Consensus 154 ~NK~D~~~~~~~~~~~~~-~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 154 ANKIDKNKFQVDILEVQK-YAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp EECTTCC-CCSCHHHHHH-HHHHTT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EECCCcccccCCHHHHHH-HHHHcC-CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999943211 1222222 222333 3899999999999999999998765
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=166.31 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=104.7
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
..+..+|+++|.+|||||||+|++++..+. .....++......... .....+.+|||||. ..+..+..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~------ 84 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ--EEFSAMRE------ 84 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSC--GGGCSSHH------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCc--hhhHHHHH------
Confidence 345669999999999999999999987654 2333333333233333 33455777999994 34443322
Q ss_pred HhhccCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecC
Q 018949 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA 265 (348)
.++..+|++++|+|+++.. .....++...... ...+.|+++|+||+|+.....+ .+....+....+ .+++++||
T Consensus 85 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa 162 (183)
T 3kkq_A 85 -QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSA 162 (183)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-CCEEEEBC
T ss_pred -HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-CeEEEecc
Confidence 3367899999999998753 2233333333221 1267899999999998753221 112222333333 47999999
Q ss_pred C-CCCCHHHHHHHHHHhC
Q 018949 266 K-YGHGVEDIRDWILTKL 282 (348)
Q Consensus 266 ~-~g~gi~eL~~~i~~~l 282 (348)
+ +|.|+++++++|.+.+
T Consensus 163 ~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 163 KDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp SSSCBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 9 9999999999998765
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=168.60 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=107.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|+|++..+..... +.+.+.......+......+.+|||||+. .+..+ ...+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 94 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE--RYRAI-------TSAY 94 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCC--TTCTT-------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCch--hhhhh-------hHHH
Confidence 44589999999999999999999887653322 22333333333344456789999999963 33332 2344
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++|+|+|+++.. .....++..+......+.|+++|+||+|+...... ......+....+ .+++++||++|.
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 173 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG-LLFLETSALDST 173 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 78999999999998754 22233433333322357899999999999753221 112223333334 389999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 174 gi~~l~~~l~~~i 186 (193)
T 2oil_A 174 NVELAFETVLKEI 186 (193)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=163.84 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||+|++.+..+. ....+++....... +......+.+|||||.. .+..+ ...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~-------~~~ 71 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE--DYAAI-------RDN 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CHHH-------HHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcc--hhHHH-------HHH
Confidence 3458999999999999999999987753 33334443333332 33334689999999943 33322 334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhh--HHHHHHHHHhcCCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+....+ ..+...... ..+ .+++++||+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~ 149 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-QWN-VNYVETSAK 149 (168)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-HHT-CEEEECCTT
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-HcC-CeEEEeCCC
Confidence 467899999999998644 22223333322221 14799999999999975322 122222222 223 379999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|++++++++.+.+
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 150 TRANVDKVFFDLMREI 165 (168)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-22 Score=174.49 Aligned_cols=161 Identities=12% Similarity=0.008 Sum_probs=108.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|||||||++++++..+. .....|+...... .+......+.+|||||. ..+..+ ..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~ 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGS--PYYDNV-------RP 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCS--GGGTTT-------GG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCC--HhHHHH-------HH
Confidence 35569999999999999999999988764 2333333333332 23445578999999994 333333 23
Q ss_pred hhccCccEEEEEecCCCCCchH--HHHHHHhcccccCCCCEEEEEeccCCCChh-------------hHHHHHHHHHhcC
Q 018949 191 SAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDLIKPG-------------EIAKKLEWYEKFT 255 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~--~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-------------~~~~~~~~~~~~~ 255 (348)
.++..+|++|+|+|+++..... ...|...+.....+.|+++|+||+|+.... ........+....
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 4578999999999998754222 233444444433689999999999996421 1112223333334
Q ss_pred CCCeEEEecCCCCCC-HHHHHHHHHHhCCC
Q 018949 256 DVDEVIPVSAKYGHG-VEDIRDWILTKLPL 284 (348)
Q Consensus 256 ~~~~i~~vSA~~g~g-i~eL~~~i~~~l~~ 284 (348)
+..++++|||++|.| ++++|+.|.+.+..
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 444899999999998 99999999987754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=170.30 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=109.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC--CCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. ....+++.......+.. ..+.+.+|||||. ..+..+ ...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 97 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--EDYDRL-------RPL 97 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 4569999999999999999999987654 34445555544444443 3456679999995 333322 334
Q ss_pred hccCccEEEEEecCCCCCch--HHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++.... ....+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 57899999999999875422 2223444444333589999999999997644321 12233444455
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999998765
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-22 Score=194.36 Aligned_cols=165 Identities=28% Similarity=0.353 Sum_probs=116.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
++.++|+|+|.+|||||||+|+|++.+...+.+.+++|++.....+...+..+.+|||||+.. ....+...+...+..+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI-GDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCC-cchHHHHHHHHHHHhh
Confidence 445699999999999999999999999888889999999999888888889999999999752 2233455566677778
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+..+|++|+|+|+..+....+.++...++. .++|+++|+||+|+..... ....+. ..+...++++||++|.|+.
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~---~~~e~~-~lg~~~~~~iSA~~g~gv~ 173 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA---NIYDFY-SLGFGEPYPISGTHGLGLG 173 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC------------CCSG-GGSSSSEEECCTTTCTTHH
T ss_pred HhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhhh---hHHHHH-HcCCCceEEeecccccchH
Confidence 899999999999998888888888888877 7899999999999874321 111111 1233457899999999999
Q ss_pred HHHHHHHHhCCC
Q 018949 273 DIRDWILTKLPL 284 (348)
Q Consensus 273 eL~~~i~~~l~~ 284 (348)
+|++.+.+.++.
T Consensus 174 ~L~~~i~~~l~~ 185 (456)
T 4dcu_A 174 DLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHTTGGG
T ss_pred HHHHHHHhhccc
Confidence 999999987753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=165.25 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=108.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|++|||||||++++.+..+....++.+.+. ..+..++..+.+|||||... +..+ +..+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~~ 82 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQTS--IRPY-------WRCY 82 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC------CCTT-------GGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEECCEEEEEEECCCCHh--HHHH-------HHHH
Confidence 356699999999999999999999887755555554332 22344568899999999532 2222 2345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAK 266 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~ 266 (348)
+..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+... ....+++++||+
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 162 (183)
T 1moz_A 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAI 162 (183)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCC
Confidence 78999999999998764 34445555555432 2679999999999997643333322222211 122378999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|+++++++|.+.+
T Consensus 163 ~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 163 KGEGITEGLDWLIDVI 178 (183)
T ss_dssp GTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998765
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=169.98 Aligned_cols=159 Identities=19% Similarity=0.160 Sum_probs=105.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+.. ...+..+.......+..++ ..+.+|||||. ..+..+ +..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 88 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ--ERFRTI-------TTA 88 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEETTEEEEEEEECCTTG--GGGTCC-------CHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHH
Confidence 44589999999999999999999877642 3333333333333333343 68999999994 333332 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDD 167 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-CCEEECBTTTTB
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 468999999999998653 22333333333222247899999999999533211122222222223 379999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|+++++++|.+.+.
T Consensus 168 gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 168 NVNEIFFTLAKLIQ 181 (213)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987663
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=168.02 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=104.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+.. ...+..+.......+..+ ...+.+|||||. ..+..+ ...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 97 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRTI-------TQS 97 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTC--GGGHHH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHH
Confidence 44589999999999999999999877542 112222222222333333 368999999995 333322 345
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++|+|+|+++.. .....++.........+.|+++|+||+|+.....+ .+....+....+..+++++||++|
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDS 177 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 578999999999998643 23333433333222267999999999999753221 112233333344448999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 178 ~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 178 SNVEEAFLRVATELI 192 (201)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988663
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=169.13 Aligned_cols=160 Identities=23% Similarity=0.205 Sum_probs=107.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+. .....+.+|||||.. .+..+ ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~ 76 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE--RFQSL-------GVA 76 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG--GGSCS-------CCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcH--HHHHh-------HHH
Confidence 44589999999999999999999887642 2233333333333333 344789999999953 33322 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
++..+|++|+|+|++++. .....++....... ..+.|+++|+||+|+............+.......+++++||
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeC
Confidence 578999999999998653 22333333332221 146899999999999743322223333333233458999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
++|.|+++++++|.+.+.
T Consensus 157 ~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=169.50 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=101.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||++++++..+. ...+.++.......+... +..+.+|||||.. .+.. . ....+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~---~---~~~~~ 75 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE--SLRF---Q---LLDRF 75 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEEEECSSTTCCEEEEEECCCCH--HHHH---H---HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEEEEecCCCccEEEEEECCCCh--hHHH---H---HHHHH
Confidence 4558999999999999999999987754 333444433333233332 6789999999953 2221 0 23345
Q ss_pred ccCccEEEEEecCCCCCc---hHHHHHHHhccc---ccCCCCEEEEEeccCCCChhhHHHHHHHHHh-------------
Q 018949 193 GINADCIVVLVDACKAPE---RIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK------------- 253 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~---~~~~~~~~~~~~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~------------- 253 (348)
+..+|++|+|+|+++... ....++...+.. ...+.|+++|+||+|+............+..
T Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 155 (214)
T 2fh5_B 76 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAP 155 (214)
T ss_dssp GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---
T ss_pred HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcc
Confidence 789999999999986221 222233333221 1257899999999999865433222222211
Q ss_pred -----------cCC-------------CCeEEEecCCCC------CCHHHHHHHHHHhC
Q 018949 254 -----------FTD-------------VDEVIPVSAKYG------HGVEDIRDWILTKL 282 (348)
Q Consensus 254 -----------~~~-------------~~~i~~vSA~~g------~gi~eL~~~i~~~l 282 (348)
..+ ..++++|||++| .|+++++++|.+.+
T Consensus 156 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 156 STLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 111 457999999999 99999999998753
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=160.36 Aligned_cols=156 Identities=21% Similarity=0.189 Sum_probs=102.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|+|||||+|++.+..+.. ....++....... .......+.+|||||.. .+..+ ...+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--~~~~~-------~~~~ 71 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVIDGETCLLDILDTAGQE--EYSAM-------RDQY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCS--SCCHH-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEECCEEEEEEEEECCCch--hhhHH-------HHHh
Confidence 3589999999999999999999876542 2333333332222 23334678999999953 33322 2234
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQ 150 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-CCEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 67899999999997643 22222222222211 147999999999998763222222233333333 379999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 151 GVEDAFYTLVREI 163 (166)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-22 Score=167.61 Aligned_cols=160 Identities=24% Similarity=0.253 Sum_probs=106.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+. ....+++.......+..+ ...+.+|||||... +..+ ...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~-------~~~ 73 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE--YSIF-------PQT 73 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT--TCCC-------CGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCchh--hhHH-------HHH
Confidence 4569999999999999999999976643 334444444434444434 36789999999533 2222 224
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.....+ ......+....+. +++++||++
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFLESSAKE 152 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCTTS
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEEEEecCC
Confidence 478999999999998643 22333333332221 157999999999999654322 2223333333443 899999999
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 018949 268 GHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~~ 285 (348)
|.|+++++++|.+.+...
T Consensus 153 ~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 153 NQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999877553
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=164.33 Aligned_cols=154 Identities=14% Similarity=0.211 Sum_probs=100.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+..+....++.+... .....++.....+.+|||||... ..++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~--------------~~~~ 70 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD--------------AKFS 70 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC--------------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch--------------hHHH
Confidence 45689999999999999999999887653223322221 11222333346789999999532 1235
Q ss_pred cCccEEEEEecCCCCC--chHHHH---HHHhcccccCCCCEEEEEeccCCCC--hhhH-HHHHHHHHhcCCCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEI---LEEGVGDHKDKLPILLVLNKKDLIK--PGEI-AKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~---~~~~~~~~~~~~p~ivv~NK~Dl~~--~~~~-~~~~~~~~~~~~~~~i~~vSA 265 (348)
+.+|++++|+|++++. .....+ +.........+.|+++|+||+|+.. .... .+....+....+..+++++||
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 150 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXA 150 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBT
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEec
Confidence 6799999999998754 222232 2222221125789999999999942 1111 111222222222348999999
Q ss_pred CCCCCHHHHHHHHHHhC
Q 018949 266 KYGHGVEDIRDWILTKL 282 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l 282 (348)
++|.|++++++++.+.+
T Consensus 151 ~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TTTBTHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH
Confidence 99999999999998765
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=163.85 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=100.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe---CCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+|+++|.+|+|||||++++++..+.. ...+..+.......+. .....+.+|||||. ..+. ....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~ 76 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ--ERFQ-------SLGV 76 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCC--hHhh-------hhhH
Confidence 45689999999999999999999876542 1222222222223333 23568999999994 2222 2244
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhh--HHHHHHHHHhcCCCCeEEE
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIP 262 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~ 262 (348)
.++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+..... .......+.......++++
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 156 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEE
Confidence 5688999999999998754 22233333322211 15789999999999964321 1222333333234458999
Q ss_pred ecCCCCCCHHHHHHHHHHhC
Q 018949 263 VSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l 282 (348)
+||++|.|+++++++|.+.+
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 157 TSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=169.30 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=103.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++++..+. ..+.+|+.......+..++ ..+.+|||||.. .+..+ ...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 87 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD--EFDKL-------RPL 87 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCST--TCSSS-------GGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCH--HHHHH-------hHh
Confidence 4568999999999999999999988753 4445555544444444443 568899999953 33332 224
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhh-------------HHHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-------------IAKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++... .....|...+.....+.|+++|+||+|+..... .......+....+
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence 5789999999999987542 222223333333235899999999999975321 0112233333334
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
..++++|||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 458999999999999999999987653
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=166.93 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=105.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+|+++|.+|||||||+|++++..+... .++.+.+..............+.+|||||.. .+..+ ...++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 92 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE--RYRTI-------TTAYY 92 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC--SSCCS-------GGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH--HHhhh-------HHHhc
Confidence 45899999999999999999998776422 2333333333333344446789999999953 33322 33557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.|
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG-FEFFEASAKENIN 171 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 8999999999997653 22233333322221257999999999999753221 112222332233 3899999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++++++|.+.+
T Consensus 172 i~~l~~~l~~~i 183 (189)
T 2gf9_A 172 VKQVFERLVDVI 183 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-22 Score=169.02 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=99.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||++++.+..+. ....+++....... +......+.+|||||. ..+..+ ...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 75 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ--EDYNRL-------RPL 75 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC---CTTTTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 4568999999999999999999987653 23333333222111 2233456779999994 333322 234
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-----------HHHHHHHHhcCCCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-----------AKKLEWYEKFTDVD 258 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~ 258 (348)
++..+|++++|+|+++... .....+...+.....+.|+++|+||+|+...... ......+....+..
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 155 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCS
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCC
Confidence 5789999999999986542 2222233333332257999999999998754432 12223333334445
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988664
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=167.75 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=105.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC--CCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++++..+.. ...+..+.+.....+.. ....+.+|||||. ..+. .....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~-------~~~~~ 94 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--ERFR-------SITQS 94 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHH
Confidence 44589999999999999999999876542 22233333333333333 3468999999994 3322 22446
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|
T Consensus 95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g 173 (201)
T 2ew1_A 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD-MYYLETSAKES 173 (201)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 689999999999998654 22233333332222257899999999999743221 111222222223 47999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 174 ~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 174 DNVEKLFLDLACRLI 188 (201)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987663
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=162.78 Aligned_cols=158 Identities=21% Similarity=0.227 Sum_probs=100.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|||||||+|++++..+.. . ...+....... ........+.+|||||..+ +..+ ...+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~~~-------~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE-S-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQ--FPAM-------QRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS-S-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSS--CHHH-------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-C-CCCCccccEEEEEEECCEEEEEEEEECCCchh--hHHH-------HHHh
Confidence 3589999999999999999999876542 1 11111111111 2233346799999999532 2222 2334
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccc--ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~--~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
+..+|++++|+|+++.. .....++...... ...+.|+++|+||+|+....++ ......+....+ .+++++||++
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAKL 150 (172)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-CeEEEecCCC
Confidence 67799999999998643 2222333222211 1147899999999998654322 111122222223 3899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 151 ~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 151 NHNVKELFQELLNLEKR 167 (172)
T ss_dssp TBSHHHHHHHHHHTCCS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999998754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=167.54 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=103.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|++.+..+.... ++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 90 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ--ESFRSI-------TRSY 90 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--hhhhhh-------HHHH
Confidence 4458999999999999999999987765322 22222222222233333468999999994 343333 2234
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-LIFMETSAKTAC 169 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 68999999999998643 22333333333222357999999999999653221 112222222223 389999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 170 gi~~l~~~l~~~i 182 (191)
T 2a5j_A 170 NVEEAFINTAKEI 182 (191)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=166.33 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=109.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+..+....++.+.+ ...+..++..+.+|||||... +..+ ...++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~Dt~G~~~--~~~~-------~~~~~ 87 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN----LETLQYKNISFEVWDLGGQTG--VRPY-------WRCYF 87 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC----EEEEEETTEEEEEEEECCSSS--SCCC-------CSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE----EEEEEECCEEEEEEECCCCHh--HHHH-------HHHHh
Confidence 4569999999999999999999987765433333322 223444678999999999532 2222 23457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....... .....+++++||++
T Consensus 88 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 8999999999998764 44445555554432 257999999999999865333333222221 11223799999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 168 ~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 168 GDGLVEGMDWLVERLR 183 (189)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=164.96 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=105.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|+|||||+|++++..+. .....++.......+. .....+.+|||||.. .+..+ ..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 84 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE--DYAAI-------RD 84 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT--CCHHH-------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCc--ccHHH-------HH
Confidence 34568999999999999999999987753 3344444443333333 334679999999953 33322 23
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhh--HHHHHHHHHhcCCCCeEEEecC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+..... ..+. ..+....+ .+++++||
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~-~~~~~~Sa 162 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA-KNRAEQWN-VNYVETSA 162 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHH-HHHHHHTT-CEEEECCT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHH-HHHHHHcC-CeEEEeCC
Confidence 4467899999999998643 22223333322221 14799999999999875322 2222 22223333 38999999
Q ss_pred CCCCCHHHHHHHHHHhC
Q 018949 266 KYGHGVEDIRDWILTKL 282 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l 282 (348)
++|.|+++++++|.+.+
T Consensus 163 ~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREI 179 (187)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-22 Score=191.93 Aligned_cols=165 Identities=28% Similarity=0.399 Sum_probs=115.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCe-eEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
....+|+++|++|+|||||+|+|++..+..++..+++|.......+...+. .+.+|||||+.+ +..+.....+.+..
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d--~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD--VGELGRLRVEKARR 109 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC--CCTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc--ccchhHHHHHHHHH
Confidence 345689999999999999999999998876788888888877666665544 899999999653 33332222344566
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
++..+|++|+|+|+ +.......+...+.. .++|+++|+||+|+...... +....+....+ .+++++||++|.|+
T Consensus 110 ~l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g-~~v~~vSAktg~gI 183 (423)
T 3qq5_A 110 VFYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLYESRYE-AKVLLVSALQKKGF 183 (423)
T ss_dssp HHTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHSSCCTT-CCCCCCSSCCTTST
T ss_pred HHhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHHHHHcC-CCEEEEECCCCCCH
Confidence 78899999999999 455555666666666 58999999999999875543 23344444444 38899999999999
Q ss_pred HHHHHHHHHhCCCC
Q 018949 272 EDIRDWILTKLPLG 285 (348)
Q Consensus 272 ~eL~~~i~~~l~~~ 285 (348)
++++++|.+.++..
T Consensus 184 ~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 184 DDIGKTISEILPGD 197 (423)
T ss_dssp TTHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999999654
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=165.82 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=106.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+|+++|.+|||||||+|+|++..+... .++.+.+..............+.+|||||+. .+. ..+..++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~ 78 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE--RYR-------TITTAYY 78 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGH-------HHHHTTG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch--hhc-------chHHHhh
Confidence 45899999999999999999999876422 2223333333333334446789999999953 222 2245668
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
..+|++|+|+|++++. .....++.........+.|+++|+||+|+...... ......+....+ .+++++||++|.|
T Consensus 79 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 79 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG-FEFFEASAKDNIN 157 (203)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC-CeEEEEECCCCCC
Confidence 8999999999998754 22233333322221257899999999999753221 112222333333 3899999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
+++++++|.+.+.
T Consensus 158 i~~l~~~l~~~i~ 170 (203)
T 1zbd_A 158 VKQTFERLVDVIC 170 (203)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=168.63 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=100.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+... ..+..+.......+..+ ...+.+||||| +..+..+ +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G--~~~~~~~-------~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD-SNHTIGVEFGSRVVNVGGKTVKLQIWDTAG--QERFRSV-------TRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTT--HHHHSCC-------CHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCcccceeEEEEEEECCeeeEEEEEcCCC--cHhHHHH-------HHH
Confidence 445899999999999999999998876532 22222222222233333 47899999999 4333332 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++|+|+|+++.. .....++.........+.|+++|+||+|+.....+ ......+....+ .+++++||++|
T Consensus 94 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~g 172 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-LMFLETSALTG 172 (200)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEECTTTC
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 478999999999998754 22333333332222257999999999999643221 111222222333 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 173 ~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 173 ENVEEAFLKCARTIL 187 (200)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987663
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=166.79 Aligned_cols=159 Identities=20% Similarity=0.180 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe-EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...+|+++|.+|||||||++++.+..+... ..+.++... ....+......+.+|||||. ..+..+ ...+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLS 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETTEEEEEEEECCCCS--GGGTTT-------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECCEEEEEEEEECCCc--hhHHHH-------HHHh
Confidence 345899999999999999999998776421 122222222 11222333468999999994 333332 2245
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDV 257 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~~ 257 (348)
+..+|++++|+|+++.. ......+...+.....+.|+++|+||+|+....... +....+....+.
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC
Confidence 78999999999998643 223233444444333589999999999998653221 112223333444
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+++++||++|.|+++++++|.+.+
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998754
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-21 Score=162.45 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=103.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE-EEEEeCC-----------CeeEEEEeCCCCchhhhhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGP-----------EYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~-~~~~~~~-----------~~~~~l~DtpG~~~~~~~~l 181 (348)
+..+|+++|.+|||||||+|++++..+.. ...+....... ...+... ...+.+|||||.. .+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE--RFR-- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG--GGH--
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH--HHH--
Confidence 45699999999999999999999876542 11222222222 2223322 4689999999953 222
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCC
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDV 257 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~ 257 (348)
..+..++..+|++++|+|++++. .....++........ .+.|+++|+||+|+...... .+....+....+
T Consensus 85 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~- 158 (195)
T 3bc1_A 85 -----SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYG- 158 (195)
T ss_dssp -----HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-
T ss_pred -----HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-
Confidence 23456689999999999998754 222233332222211 57999999999999753221 112222222223
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+++++||++|.|+++++++|.+.+
T Consensus 159 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 159 IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999998765
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=184.23 Aligned_cols=167 Identities=23% Similarity=0.305 Sum_probs=119.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhh--hhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~--~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||+|+|++.+.. ++.++.+|.......+...+ ..+.+|||||+.+.. ...+.. .+.+.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~----~fl~~i 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGH----QFLRHI 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHH----HHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHH----HHHHHH
Confidence 7999999999999999999988765 47888888888777777664 789999999975422 122322 334456
Q ss_pred cCccEEEEEecCCC---CC--chHHHHHHHhccccc---CCCCEEEEEeccCCCChhhHHHHHHHHHhcCC-CCeEEEec
Q 018949 194 INADCIVVLVDACK---AP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVS 264 (348)
Q Consensus 194 ~~ad~iv~VvD~~~---~~--~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~i~~vS 264 (348)
..+|++|+|+|+++ .. .... .+...+.... .++|+++|+||+|+....+ ....+..... ..+++++|
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHHCCSCCCBCCCS
T ss_pred HhccEEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHHhhcCCCEEEEE
Confidence 78999999999976 22 2222 3333333221 4799999999999986543 1223333322 24789999
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCC--CCCCc
Q 018949 265 AKYGHGVEDIRDWILTKLPLGPA--YYPKD 292 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~~~--~~~~~ 292 (348)
|+++.|+++|+++|.+.+...++ .|+.+
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~~~~~~y~~e 340 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENTPEFPLYDEE 340 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSCCCCCSSCSC
T ss_pred CCCCcCHHHHHHHHHHHHhhCccccCCCcc
Confidence 99999999999999998876554 44443
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-22 Score=167.81 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=82.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||++++.+..+.. ...+..+.......+..+ ...+.+|||||. ..+.. ....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~ 76 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ--ERFRT-------ITTA 76 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEcCCCC--hhhhh-------hHHH
Confidence 34589999999999999999999876542 222333333333333333 378999999994 22222 2335
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|++++. .....++.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 155 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG-IKFMETSAKAN 155 (183)
T ss_dssp TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT-CEEEECCC---
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 578999999999998753 22333333332222257899999999999753221 112222222223 38999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|+++++.+|.+.+
T Consensus 156 ~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 156 INVENAFFTLARDI 169 (183)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-21 Score=163.64 Aligned_cols=159 Identities=21% Similarity=0.173 Sum_probs=101.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|||||||+|+|++..+. ....+++.......+. .....+.+|||||.. .+.. ...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~-------~~~ 87 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE--EYSA-------MRD 87 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChH--HHHH-------HHH
Confidence 35569999999999999999999987654 2333444433333333 334669999999942 2222 234
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.......+....+....+. +++++||++
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 166 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGI-PFIETSAKT 166 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 5588999999999998654 22222222221111 1479999999999987532111222223222333 799999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 167 ~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 167 RQGVEDAFYTLVREIR 182 (190)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=167.30 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=100.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|++++..+.. ..++.+.+.......+......+.+|||||.. .+..+ +..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~~~-------~~~~ 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE--RFRSI-------AKSY 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT--TCHHH-------HHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc--chhhh-------HHHH
Confidence 45699999999999999999999877532 22333333333333344445779999999953 33222 3344
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChh------hH-HHHHHHHHhcCCCCeEEEe
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------EI-AKKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~------~~-~~~~~~~~~~~~~~~i~~v 263 (348)
+..+|++|+|+|+++.. .....++..+......+.|+++|+||+|+.... .+ ......+....+ .+++++
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~ 176 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCET 176 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEEC
T ss_pred HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEe
Confidence 67899999999998654 223333322222222579999999999986321 11 112222222223 389999
Q ss_pred cCCCCCCHHHHHHHHHHhCC
Q 018949 264 SAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~ 283 (348)
||++|.|+++++.+|.+.+.
T Consensus 177 SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=168.07 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=105.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++.+..+... ...++...... .+......+.+|||||.. .+..+ ...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 92 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQE--DYDRL-------RPL 92 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCT--TCTTT-------GGG
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceEEEEEEECCEEEEEEEEECCCcH--HHHHH-------HHh
Confidence 345899999999999999999998776422 22222222222 223334679999999953 33222 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-------------HHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (348)
++..+|++++|+|+++.. ......+...+.....+.|+++|+||+|+.......+ ....+....+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 578999999999998643 3332334444443335899999999999976432221 1122223344
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
..+++++||++|.|+++++++|.+.+..
T Consensus 173 ~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 173 AYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999987643
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.2e-22 Score=169.24 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=108.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...+|+++|.+|||||||+|+|++..+.. ..++.+++..............+.+||||| +..+..+ ...+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~ 92 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG--QERYRTI-------TTAY 92 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH--HHHCHHH-------HHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC--hHHHHHH-------HHHH
Confidence 34589999999999999999999866432 123334445545555566778999999999 4333322 3455
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... ......+....+. +++++||++|.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 171 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFEASAKENI 171 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 78999999999998643 23333333332222257999999999998643221 1222233333343 89999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 172 gi~~l~~~l~~~i 184 (191)
T 3dz8_A 172 SVRQAFERLVDAI 184 (191)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-21 Score=163.54 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=102.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|||||||++++++..+... ...+ .......+. .....+.+|||||... +.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~--~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~----------- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQE--ESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPE--LQ----------- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCC--CCTT-CEEEEEEEEETTEEEEEEEEECSSSCC--HH-----------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCC-cceEEEEEEECCEEEEEEEEECCCChh--hh-----------
Confidence 4556999999999999999999998776522 2222 222223333 3346788899999532 21
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCC--hhh-HHHHHHHHHhcCCCCeEEEec
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK--PGE-IAKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~--~~~-~~~~~~~~~~~~~~~~i~~vS 264 (348)
++..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.. ... ..+....+....+..++++||
T Consensus 82 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 82 -FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp -HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred -eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEec
Confidence 356799999999998754 23233433333321 14789999999999842 111 112233344444545899999
Q ss_pred CCCCCCHHHHHHHHHHhC
Q 018949 265 AKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l 282 (348)
|++|.|++++|++|.+.+
T Consensus 161 a~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 161 ATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=161.22 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=103.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||+|++.+..+.. ...+..+...... .+......+.+|||||. ..+..+ ...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ--EEFDAI-------TKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTG--GGTTCC-------CHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCc--HhHHHH-------HHH
Confidence 44589999999999999999999876542 1122222222222 23333568999999994 333333 223
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++....... .+.|+++|+||+|+...... .+....+....+ .+++++||++|
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 151 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK-LRFYRTSVKED 151 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CEEEECBTTTT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcC-CeEEEEecCCC
Confidence 468999999999998753 22333333332222 57999999999998753221 112222322233 38999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|+++++++|.+.+
T Consensus 152 ~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 152 LNVSEVFKYLAEKH 165 (168)
T ss_dssp BSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=169.80 Aligned_cols=160 Identities=19% Similarity=0.132 Sum_probs=109.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. ....+++.......+ ......+.+|||||.. .+..+ ...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE--DYSRL-------RPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC--CCCC---------CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcH--HHHHH-------HHh
Confidence 4568999999999999999999987653 333444433333333 3344689999999953 33332 234
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH---------HHHHHHHHhcCCCCeE
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---------AKKLEWYEKFTDVDEV 260 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~i 260 (348)
++..+|++|+|+|+++... .....|...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 5789999999999986542 2222333443332258999999999998764331 2223333333444589
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+++||++|.|+++++++|.+.+..
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEccCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999987754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=164.52 Aligned_cols=161 Identities=21% Similarity=0.222 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|++++..+.... ++.+.+.......+......+.+|||||. ..+.. .....+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~------~~~~~~ 90 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ--ERFRK------SMVQHY 90 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS--HHHHT------TTHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc--hhhhh------hhhHHH
Confidence 4569999999999999999999987764321 22222222222223333478999999994 22220 123345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+..+|++|+|+|+++.. .....++....... ..+.|+++|+||+|+.....+ ......+....+. +++++||++|
T Consensus 91 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 169 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PLFETSAKNP 169 (189)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEECCSSSG
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-EEEEEeCCcC
Confidence 78999999999998643 22333333332221 267999999999999654221 2223333333443 7999999999
Q ss_pred ---CCHHHHHHHHHHhCC
Q 018949 269 ---HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ---~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 170 ~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGSCHHHHHHHHC----
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999987664
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=164.52 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=102.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+.. ...+..+.......+ ......+.+|||||.. .+.. ....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~~-------~~~~ 74 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE--RFHA-------LGPI 74 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcH--hhhh-------hHHH
Confidence 44589999999999999999999876542 222323323322233 3345679999999942 2222 2334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 153 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVG-AKHYHTSAKQN 153 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEEBTTTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEecCCCC
Confidence 578999999999998754 22233332222222257899999999999753221 112223333334 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 154 ~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 154 KGIEELFLDLCKRMI 168 (170)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987653
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-21 Score=164.11 Aligned_cols=161 Identities=18% Similarity=0.116 Sum_probs=103.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC---CeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+|+++|.+|||||||++++.+..+.. ...+..+.+.....+... ...+.+|||||. ..+..+ ..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ--TIGGKM-------LD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC--CTTCTT-------HH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC--ccccch-------hh
Confidence 45689999999999999999999876531 111111122222233333 378999999994 333333 23
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc--cCCCC-EEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEec
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLP-ILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~--~~~~p-~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vS 264 (348)
.++..+|++++|+|+++.. .....++....... ..+.| +++|+||+|+.....+ .+....+....+ .+++++|
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S 153 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG-FSSHFVS 153 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CEEEEEC
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC-CcEEEEe
Confidence 4478999999999998754 22223322222110 02456 8999999999753211 112222222223 3899999
Q ss_pred CCCCCCHHHHHHHHHHhCCCC
Q 018949 265 AKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~ 285 (348)
|++|.|+++++++|.+.+...
T Consensus 154 a~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 154 AKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTTCTTHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999887653
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-21 Score=164.42 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+... ...+...... .........+.+|||||. ..+..+ ...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 75 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDT--YIPTIEDTYRQVISCDKSVCTLQITDTTGS--HQFPAM-------QRL 75 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCT--TSCCCCEEEEEEEEETTEEEEEEEEECCGG--GSCHHH-------HHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCc--ccCccccceeEEEEECCEEEEEEEEeCCCh--HHhHHH-------HHH
Confidence 445899999999999999999998765421 1112111111 223334567999999994 333322 233
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcc--cccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVG--DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~--~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|+++.. .....++..+.. ....+.|+++|+||+|+............+....+ .+++++||++
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 154 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK-CAFMETSAKM 154 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC-CeEEEEecCC
Confidence 467899999999998643 222222222111 11146899999999999753211122222222223 3799999999
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 018949 268 GHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~~ 285 (348)
|.|+++++++|.+.+...
T Consensus 155 ~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 155 NYNVKELFQELLTLETRR 172 (199)
T ss_dssp TBSHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 999999999999988653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-21 Score=170.49 Aligned_cols=160 Identities=22% Similarity=0.250 Sum_probs=105.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|||||||+|+|++..+. .....++.......+ ......+.+|||||.. .+..+ ..
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 90 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD--EYSIL-------PY 90 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC--TTCCC-------CG
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc--chHHH-------HH
Confidence 35569999999999999999999988765 233344433333333 3456788999999953 33222 23
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.++..+|++++|+|+++.. .....++..+.... ..++|+++|+||+|+.....+. .....+....+. +++++||+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 169 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFMESSAR 169 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECCTT
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEEEEeCC
Confidence 4578999999999998643 33333333333221 2478999999999987543221 122223333333 89999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|+++++++|.+.+..
T Consensus 170 ~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 170 ENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=187.34 Aligned_cols=169 Identities=25% Similarity=0.306 Sum_probs=119.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh---hhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH---MLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~l~~~~~~~~~ 190 (348)
...+|+++|++|||||||+|+|++.....+++.+++|++...+.+..++..+.+|||||+...... ...........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 446999999999999999999999988778999999999888888888889999999997321110 00000011233
Q ss_pred hhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh--HHHHHHHHHh---cCCCCeEEEecC
Q 018949 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSA 265 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~---~~~~~~i~~vSA 265 (348)
.++..+|++++|+|++.+....+..+...+.. .++|+++|+||+|+..... ..+....+.. .....+++++||
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 336 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSA 336 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 55778999999999998776666666666655 6899999999999986433 2222222222 223458999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
++|.|+++|++.+.+.+..
T Consensus 337 ~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 337 DKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999886643
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-21 Score=166.09 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=106.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|||||||+|++++..+. ....+++.......+..+ ...+.+|||||.. .+..+ ..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 80 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE--DYAAI-------RD 80 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT--CCHHH-------HH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChh--hhHHH-------HH
Confidence 35569999999999999999999987753 344445444433333333 4579999999953 33322 23
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhh--HHHHHHHHHhcCCCCeEEEecC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+..... ..+...... ..+ .+++++||
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa 158 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-QWN-VNYVETSA 158 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-HHT-CEEEEECT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-HhC-CeEEEEeC
Confidence 4467899999999998643 22333333332221 14799999999999975322 222222222 223 37999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
++|.|+++++++|.+.+.
T Consensus 159 ~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988763
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=160.55 Aligned_cols=156 Identities=20% Similarity=0.221 Sum_probs=97.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhh-hHHHHHHHHHhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHM-LDSMMMKNVRSA 192 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~-l~~~~~~~~~~~ 192 (348)
.+|+++|.+|||||||++++.+.........+ .+....... ++.....+.+|||||... +.. +. ..+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~-------~~~ 72 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQGD--AGGWLQ-------DHC 72 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-----------------CHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCccc--cchhhh-------hhh
Confidence 38999999999999999999987654333222 223333322 333456789999999532 221 11 123
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+..+|++++|+|+++.. .....++........ .+.|+++|+||+|+...... ......+....+. +++++||++|
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (169)
T 3q85_A 73 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETSAALH 151 (169)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTTT
T ss_pred hccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEecCccC
Confidence 56799999999998743 334445444443321 37999999999999743221 1223333334444 8999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|++++++++.+.+
T Consensus 152 ~~v~~l~~~l~~~i 165 (169)
T 3q85_A 152 HNTRELFEGAVRQI 165 (169)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=162.24 Aligned_cols=164 Identities=12% Similarity=0.036 Sum_probs=103.0
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE-eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
..+..+|+++|.+|||||||++++.+......+.....+.......+ ......+.+|||||. ..+..+.. ...
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~----~~~ 90 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ--MDFFDPTF----DYE 90 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSS--CCTTCTTC----CHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCC--HHHHhhhh----hcc
Confidence 34566999999999999999999888543322221222222222222 256688999999994 33322210 002
Q ss_pred hhccCccEEEEEecCCCCCchHHHHHHHhccc---ccCCCCEEEEEeccCCCChhhH-------H-HHHHHHHhc---CC
Q 018949 191 SAGINADCIVVLVDACKAPERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEI-------A-KKLEWYEKF---TD 256 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~NK~Dl~~~~~~-------~-~~~~~~~~~---~~ 256 (348)
.+++.+|++|+|+|+++........+..++.. ...+.|+++|+||+|+.+.... . .....+... ..
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 34678999999999988643333333333322 2368999999999999864321 1 112223331 22
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..++++|||++ .|++++|..+.+.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 34899999999 99999999998765
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-21 Score=164.51 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=105.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||+++|.+..... ...+.++....... ++.....+.+|||||... +.. .+ ...
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--~~~---~~---~~~ 92 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD--AGG---WL---RDH 92 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG--GGH---HH---HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCcc--chh---hh---HHH
Confidence 45599999999999999999998755432 23333443333333 333456789999999532 221 11 123
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.....+ .+....+....+ .+++++||++
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sa~~ 171 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-CKHIETSAAL 171 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEEEBTTT
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhC-CEEEEEcCCC
Confidence 356899999999998643 33444444433221 147999999999999753321 112223333334 4899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 172 ~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 172 HHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TBSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987643
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=175.97 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=111.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+|+|.+|||||||+++|.+..+.... + |.......+...+..+.+||||| +..+..+ ...++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~--p--T~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNISFTVWDVGG--QDKIRPL-------WRHYF 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE--E--ETTEEEEEEEETTEEEEEEECC-------CCS-------HHHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc--c--ccceEEEEEecCcEEEEEEECCC--CHhHHHH-------HHHHh
Confidence 4558999999999999999999988864322 2 33333445666788999999999 4444433 33447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcC---CCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT---DVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~i~~vSA~~ 267 (348)
..+|++|+|+|+++.. .....++...+... ..++|+++|+||+|+.......+....+.... ...+++++||++
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 8999999999997644 44445555554432 25899999999999987554444444333221 234789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 311 g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 311 GDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TBTHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999987654
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-21 Score=164.34 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+.++.........+.......+......+.+|||||... .. ....++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~~-------~~~~~~ 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED---TI-------QREGHM 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---CH-------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---cc-------chhhhh
Confidence 45689999999999999999999887643222222222222223344457799999999643 21 123446
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~ 175 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA-CAFYECSACTGE 175 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SEEEECCTTTCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhC-CeEEEECCCcCC
Confidence 7899999999998643 22233332222211 257999999999999753221 111122222223 489999999999
Q ss_pred -CHHHHHHHHHHhC
Q 018949 270 -GVEDIRDWILTKL 282 (348)
Q Consensus 270 -gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 176 ~gi~~l~~~l~~~i 189 (196)
T 2atv_A 176 GNITEIFYELCREV 189 (196)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 9999999998765
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-21 Score=166.29 Aligned_cols=159 Identities=17% Similarity=0.132 Sum_probs=105.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+++|.+..+.. ...+..+....... +......+.+|||||. ..+..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ--ERFRTI-------TSS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHH
Confidence 34589999999999999999999877642 22233332322222 3333468999999994 333322 334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|++++. .....++.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 155 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK-MPFLETSALDS 155 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEECCTTTC
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 578999999999998754 22233333332222257899999999999764321 112233333334 37999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 156 ~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIK 170 (206)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987663
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-21 Score=165.26 Aligned_cols=158 Identities=19% Similarity=0.117 Sum_probs=102.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCC-------CCceEEeEEE-----EEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTTRHRILG-----ICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~-------~~~t~~~~~~-----~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+..+|+++|.+|||||||++.+.+......... ...|...... .+......+.+|||||. ..+..+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~ 90 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ--VFYNAS 90 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC--CSCSHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh--HHHHHH
Confidence 445899999999999999988876543221110 1112211111 22334567999999995 333333
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCch--------HHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPER--------IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~--------~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 253 (348)
...+++.+|++|+|+|++++... ...++. .++....+.|+++|+||+|+.......+. ..+..
T Consensus 91 -------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~-~~~~~~~~~piilv~NK~Dl~~~~~~~~~-~~~~~ 161 (198)
T 3t1o_A 91 -------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA-EYGLTLDDVPIVIQVNKRDLPDALPVEMV-RAVVD 161 (198)
T ss_dssp -------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH-HTTCCTTSSCEEEEEECTTSTTCCCHHHH-HHHHC
T ss_pred -------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHH-hhccccCCCCEEEEEEchhcccccCHHHH-HHHHH
Confidence 33458899999999999854211 111222 22222367999999999999765333333 33333
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 254 ~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..+..+++++||++|.|+++++++|.+.+
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 44444899999999999999999998765
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-21 Score=165.36 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=104.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. .....+....... .+......+.+|||||. ..+..+ ...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 74 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 74 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 4558999999999999999999987654 2222232222222 23344578999999995 333333 224
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhh------------H-HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++... .....|...+.....+.|+++|+||+|+..... + .+....+....+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence 5789999999999986542 221233333333335799999999999974211 0 112223333334
Q ss_pred CCeEEEecCC-CCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAK-YGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~-~g~gi~eL~~~i~~~l 282 (348)
..++++|||+ +|.|++++++.+.+.+
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 4589999999 6899999999998764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=175.20 Aligned_cols=165 Identities=25% Similarity=0.389 Sum_probs=118.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||+|+|.+.... +...+++|.......+...+..+.+|||||+.+..................
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4558999999999999999999998754 566778887777666666778899999999755332222222222333445
Q ss_pred cCccEEEEEecCCCCC----chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++++|+|++... .....++....... .+.|+++|+||+|+.....+......+.. . ..++++|||++|+
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~-~-~~~~~~iSA~~g~ 321 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENIKRLEKFVKE-K-GLNPIKISALKGT 321 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHHHHHHHHHHH-T-TCCCEECBTTTTB
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHHHHHHHHHHh-c-CCCeEEEeCCCCc
Confidence 5799999999987643 23333333333321 37999999999999876655443333332 2 2478999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++|+++|.+.+
T Consensus 322 gi~~l~~~i~~~l 334 (357)
T 2e87_A 322 GIDLVKEEIIKTL 334 (357)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-21 Score=166.01 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=103.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCC----------CeeEEEEeCCCCchhhhhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGP----------EYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~----------~~~~~l~DtpG~~~~~~~~l 181 (348)
+..+|+++|.+|||||||+|+|++..+.. ...+..+..... ..+... ...+.+||||| +..+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G--~~~~~-- 98 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG--QERFR-- 98 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES--HHHHH--
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCC--cHhHH--
Confidence 44589999999999999999999876531 111111111111 222322 56799999999 33322
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCc--hHHHHHHHhccccc--CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCC
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPE--RIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTD 256 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~ 256 (348)
..+..++..+|++|+|+|+++... ....+ ...+.... .+.|+++|+||+|+.....+ ......+....+
T Consensus 99 -----~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~-l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~ 172 (217)
T 2f7s_A 99 -----SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW-MSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG 172 (217)
T ss_dssp -----HHHHHHHTTCCEEEEEEETTCHHHHHHHHHH-HHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred -----hHHHHHhcCCCEEEEEEECcCHHHHHHHHHH-HHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC
Confidence 234456789999999999986542 22223 33332221 57899999999999753221 122333333334
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+++++||++|.|+++++++|.+.+
T Consensus 173 -~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 173 -IPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp -CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999998765
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-22 Score=189.19 Aligned_cols=213 Identities=18% Similarity=0.203 Sum_probs=135.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-----eecCCCC----------------------ceEE--------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRH-------------- 152 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-----~~~~~~~----------------------~t~~-------------- 152 (348)
..++|+++|.+|||||||+|+|+|.++. .++..|+ +|..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4569999999999999999999998864 3343443 1111
Q ss_pred ---------e-EEEEEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhcc-CccEEEEEecCCCCCchHHH-HH
Q 018949 153 ---------R-ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGI-NADCIVVLVDACKAPERIDE-IL 216 (348)
Q Consensus 153 ---------~-~~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~-~ad~iv~VvD~~~~~~~~~~-~~ 216 (348)
. ...+.......+.+|||||+.+.. .......+...+..++. ..+++++|+|++.+...... .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0 001112224679999999986421 11222233334444554 45667777888766544433 24
Q ss_pred HHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHH--HhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcc
Q 018949 217 EEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293 (348)
Q Consensus 217 ~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~--~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~ 293 (348)
...+.. .+.|+++|+||+|+.+... ........ ....+..+++++||++|.|++++++++.+. .++.++.+.
T Consensus 190 ~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e---~~~f~~~~~ 264 (353)
T 2x2e_A 190 AKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE---RKFFLSHPS 264 (353)
T ss_dssp HHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH---HHHHHHCTT
T ss_pred HHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH---HHHhccCCc
Confidence 555544 6799999999999986432 12211100 001123467889999999999999998762 222333333
Q ss_pred cCCCchH---HHHHHHHHHHHHhhccCCCCc----------eEEEEeeEEE
Q 018949 294 VSEHPER---FFVGEIIREKIFMQYRNEVPY----------ACQVCNLTFQ 331 (348)
Q Consensus 294 ~~~~~~~---~~~~e~ire~~~~~~~~eip~----------~~~~~~~~~~ 331 (348)
.+..+.+ +++.+.+++.++..+++++|| .+++.++.|.
T Consensus 265 ~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~ 315 (353)
T 2x2e_A 265 YRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYK 315 (353)
T ss_dssp TGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444445 789999999999999999999 7666665553
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-22 Score=190.49 Aligned_cols=191 Identities=21% Similarity=0.212 Sum_probs=102.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC---------------------C---CeeEEEEeCCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------P---EYQMILYDTPG 172 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~~~l~DtpG 172 (348)
+|+|+|.||||||||+|+|++.+ ..++++|++|+....+.... + ..++.+|||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 79999999999999999999988 55788999998776664311 1 35799999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC------------chHH---------------------------
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERID--------------------------- 213 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~------------~~~~--------------------------- 213 (348)
+.... .....+...+..+++.+|++++|+|++++. ....
T Consensus 81 ~~~~a--~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~ 158 (397)
T 1wxq_A 81 LVPGA--HEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTT
T ss_pred cccch--hhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 75421 111222233446689999999999998751 0000
Q ss_pred ---------------------------------------------HHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH
Q 018949 214 ---------------------------------------------EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (348)
Q Consensus 214 ---------------------------------------------~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 248 (348)
..+...... ..+|+++|+||+|+.....+....
T Consensus 159 ~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~--~~kP~i~v~NK~D~~~~~~l~~l~ 236 (397)
T 1wxq_A 159 LQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRR--VNKPMVIAANKADAASDEQIKRLV 236 (397)
T ss_dssp SSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHH--HHSCEEEEEECGGGSCHHHHHHHH
T ss_pred hcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhc--cCCCEEEEEeCccccchHHHHHHH
Confidence 000000011 248999999999988433333333
Q ss_pred HHHHhcCCCCeEEEecCCCCCCHHHHHH-HHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhcc
Q 018949 249 EWYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYR 316 (348)
Q Consensus 249 ~~~~~~~~~~~i~~vSA~~g~gi~eL~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~ 316 (348)
..+... + .+++++||+.+.|+.+|++ .+.+.++..++.++.+..++.+.+ ..|.+|++++..+.
T Consensus 237 ~~~~~~-~-~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~--~~e~ire~~l~~~g 301 (397)
T 1wxq_A 237 REEEKR-G-YIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKR--ALMVIKEKVLDRFG 301 (397)
T ss_dssp HHHHHT-T-CEEEEECHHHHHHHHSCSSSCCCCSCC-------------------CTTHHHHHHTSSSS
T ss_pred HHHhhc-C-CcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHH--HHHHHHHHHHHHhC
Confidence 333222 2 4799999999999999888 888999999999999888776655 56778876665443
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-21 Score=195.95 Aligned_cols=210 Identities=18% Similarity=0.204 Sum_probs=145.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe-----------------------------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR----------------------------------------- 153 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~----------------------------------------- 153 (348)
.++|+++|.+|+|||||+|+|+|..+.+....+ +|+.+
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 448999999999999999999998764332222 22111
Q ss_pred ----------E-EEEEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhc-cCccEEEEEecCCCCCchHHH-HH
Q 018949 154 ----------I-LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAG-INADCIVVLVDACKAPERIDE-IL 216 (348)
Q Consensus 154 ----------~-~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~-~~ad~iv~VvD~~~~~~~~~~-~~ 216 (348)
. ..+......++.++||||+.... ...+...+...+..++ ..+|++++|+|++.+....+. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 0 11112233468999999987522 1111222222333333 689999999999987655544 46
Q ss_pred HHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhc----CCCCeEEEecCCCCCCHHHHHHHHHH---hCCCCCCCC
Q 018949 217 EEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----TDVDEVIPVSAKYGHGVEDIRDWILT---KLPLGPAYY 289 (348)
Q Consensus 217 ~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~i~~vSA~~g~gi~eL~~~i~~---~l~~~~~~~ 289 (348)
...+.. .+.|+|+|+||+|+.+.......... ... .+..+++++||++|.|+++|++.+.+ .++..|++
T Consensus 210 l~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y- 285 (772)
T 3zvr_A 210 AKEVDP--QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY- 285 (772)
T ss_dssp HHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHh--cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch-
Confidence 666665 67999999999999865432111111 111 23457899999999999999999987 36556654
Q ss_pred CCcccCCCchHHHHHHHHHHHHHhhccCCCCc----------eEEEEeeEEE
Q 018949 290 PKDIVSEHPERFFVGEIIREKIFMQYRNEVPY----------ACQVCNLTFQ 331 (348)
Q Consensus 290 ~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~----------~~~~~~~~~~ 331 (348)
+..++.+.++.++|++|++++..+++++|| .+++.++.|.
T Consensus 286 --d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~ 335 (772)
T 3zvr_A 286 --RHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYK 335 (772)
T ss_dssp --GGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhC
Confidence 567789999999999999999999999999 7777776654
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-21 Score=167.90 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=101.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+++|.+..+.... ++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 82 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ--ERYRAI-------TSAY 82 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--cchhhh-------HHHH
Confidence 3458999999999999999999988765322 22222222222222333368999999994 333322 2345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++|+|+|+++.. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 83 ~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 161 (223)
T 3cpj_B 83 YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQ-LLFTETSALNSE 161 (223)
T ss_dssp TTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT-CEEEECCCC-CC
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 78999999999998754 22233333332222257899999999999753221 112222333333 489999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 018949 270 GVEDIRDWILTKLPL 284 (348)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (348)
|+++++++|.+.+..
T Consensus 162 gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 162 NVDKAFEELINTIYQ 176 (223)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=165.08 Aligned_cols=160 Identities=22% Similarity=0.225 Sum_probs=101.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||+|++.+.....+...+.++...... .++.....+.+|||+|.... .. . ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-~~----~---l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-NE----W---LHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-HH----H---HHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-hh----h---HHHH
Confidence 3458999999999999999999976543333333332222222 23333456789999994321 11 1 1234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
+++.+|++|+|+|.++.. .....++..+... ...++|+++|+||+|+.....+. .....+....+ .++++|||++
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-~~~~e~SAk~ 186 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAV 186 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-CEEEEEeCCC
Confidence 578899999999998643 3333333333221 12579999999999996432211 11122222223 4799999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|++++|++|.+.+
T Consensus 187 g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 187 QHNVKELFEGIVRQV 201 (211)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=189.35 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=104.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecC------------------------------CCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN------------------------------KPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+|+|++....+... .+++|.......+...+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 45699999999999999999999775432211 246677666666777888
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-------CchHHHHHHHhcccccCCC-CEEEEEec
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKL-PILLVLNK 235 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-------~~~~~~~~~~~~~~~~~~~-p~ivv~NK 235 (348)
.+.+|||||+.+ +...+..++..+|++|+|+|++.+ ...+.......+.. .+. |+|+|+||
T Consensus 246 ~~~iiDTPG~e~---------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvNK 314 (611)
T 3izq_1 246 NFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNK 314 (611)
T ss_dssp EEEEEECCSSSC---------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEEC
T ss_pred eEEEEECCCCcc---------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEec
Confidence 999999999643 234556778999999999999864 22344444444444 344 59999999
Q ss_pred cCCCCh--hhHHHHHHHH----HhcC---CCCeEEEecCCCCCCHHHH
Q 018949 236 KDLIKP--GEIAKKLEWY----EKFT---DVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 236 ~Dl~~~--~~~~~~~~~~----~~~~---~~~~i~~vSA~~g~gi~eL 274 (348)
+|+.+. .........+ .... ...++++|||++|.|+.++
T Consensus 315 iDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 315 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 999862 2222222222 2111 1358999999999999865
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.83 E-value=7.4e-21 Score=165.02 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=75.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE-EeEEEEEeCC----CeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSGP----EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~-~~~~~~~~~~----~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
+..+|+++|.+|||||||+++|.+...........|+. +.....+..+ ...+.+|||||.. .+. ..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~ 89 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD--LYK-------EQ 89 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH--HHH-------HH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH--HHH-------HH
Confidence 34589999999999999999999883222233444443 3333334433 5689999999952 222 23
Q ss_pred HHhhccCccEEEEEecCCCCC--chHHHHHHHhccccc---CCCCEEEEEeccCCCC-hhhH-HHHHHHHHhcCCCCeEE
Q 018949 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIK-PGEI-AKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~-~~~~-~~~~~~~~~~~~~~~i~ 261 (348)
...++..+|++++|+|++++. .....++........ .+.|+++|+||+|+.. ...+ .+....+....+ .+++
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-~~~~ 168 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT-LDFF 168 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT-CEEE
T ss_pred HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC-CEEE
Confidence 456688999999999998754 233333333332222 4789999999999976 3221 122223333334 4899
Q ss_pred EecCCC-CCCHHHHHHHHHHhC
Q 018949 262 PVSAKY-GHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~-g~gi~eL~~~i~~~l 282 (348)
++||++ |.|+++++++|.+.+
T Consensus 169 ~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 169 DVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp ECCC-------CHHHHHHHHHH
T ss_pred EeccCCCCcCHHHHHHHHHHHH
Confidence 999999 999999999998865
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-20 Score=156.51 Aligned_cols=158 Identities=26% Similarity=0.384 Sum_probs=100.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh------hhhhHHHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMKNVR 190 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~l~~~~~~~~~ 190 (348)
+|+++|.+|||||||+|++.+..+. ....+++|.......+. .+.+|||||+.... .............
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999998754 45566666554443332 68999999963211 1111111111111
Q ss_pred hhccCccEEEEEecCCCCCchHHHH-----------HHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC--
Q 018949 191 SAGINADCIVVLVDACKAPERIDEI-----------LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV-- 257 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~-----------~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-- 257 (348)
.....++++++|+|..........+ +...+.. .+.|+++|+||+|+.... ......+....+.
T Consensus 78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPL 153 (190)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCG
T ss_pred hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcH--HHHHHHHHHHhhhhh
Confidence 1256678888888875321111111 2222333 679999999999998754 2222233322222
Q ss_pred ----CeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 258 ----DEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 258 ----~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+++++||++|.|+++++++|.+.+.
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 25899999999999999999988764
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.9e-21 Score=165.86 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=104.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+++|.+..+. ..+..+........ ++.....+.+|||||. ..+..+ ...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 95 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 95 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCc--HhhhHH-------HHh
Confidence 4458999999999999999999987764 22222322222222 2344578999999995 333333 224
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhh------------H-HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (348)
++..+|++|+|+|+++... .....|...+.....+.|+++|+||+|+..... + .+....+....+
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 5789999999999986542 221233333333335799999999999974211 0 111223333334
Q ss_pred CCeEEEecCC-CCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAK-YGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~-~g~gi~eL~~~i~~~l 282 (348)
..++++|||+ +|.|++++|+.|.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 4589999999 6899999999998754
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=161.63 Aligned_cols=156 Identities=15% Similarity=0.084 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++++..+. ..+..|+...... .+......+.+|||||. ..+..+ ..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~--------~~ 87 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADL--DTPRNC--------ER 87 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CCCT--------HH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCC--CcchhH--------HH
Confidence 4558999999999999999999987753 3344444433222 23344577899999994 333332 13
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA 265 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.....+ .+....+....+ .+++++||
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 166 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG-CLFFEVSA 166 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CEEEECCS
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC-CcEEEEee
Confidence 467899999999998643 22333333332211 157999999999999643221 111222222233 38999999
Q ss_pred -CCCCCHHHHHHHHHHhC
Q 018949 266 -KYGHGVEDIRDWILTKL 282 (348)
Q Consensus 266 -~~g~gi~eL~~~i~~~l 282 (348)
++|.|++++++.|.+.+
T Consensus 167 ~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 167 CLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp SSCSHHHHHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHHHH
Confidence 89999999999998765
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=167.57 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|.+|||||||+|++++.....++..+++|.......+. .++..+.+|||||. ..+ ....+......++.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~--~~~--~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ--DVF--MENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCS--HHH--HHHHHTTTHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCc--HHH--hhhhhhhHHHHHhc
Confidence 48999999999999999999987555456677777776666555 35789999999995 332 11111233445578
Q ss_pred CccEEEEEecCCCCCc--hHHHH--HHHhcccccCCCCEEEEEeccCCCChhhHH-------HHHHHHHhcCCC--CeEE
Q 018949 195 NADCIVVLVDACKAPE--RIDEI--LEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------KKLEWYEKFTDV--DEVI 261 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~--~~~~~--~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------~~~~~~~~~~~~--~~i~ 261 (348)
.+|++|+|+|+++... ....+ +...+.....+.|+++|+||+|+....... .....+....+. .+++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999999987652 22211 111222223689999999999998733221 334445555553 6899
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
++||++ .|+.+++..+...+
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTT
T ss_pred EeeecC-ChHHHHHHHHHHHH
Confidence 999999 88999988877655
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-22 Score=172.21 Aligned_cols=160 Identities=18% Similarity=0.142 Sum_probs=98.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+.. ...+.++.......+..+ ...+.+|||||. ..+..+ ...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 101 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 101 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTC--TTCCCC-------SCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHH
Confidence 44589999999999999999999877542 222223333333333333 367999999994 333222 223
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+....... .....+....+ .+++++||++|
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSA~~g 180 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 180 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-CCBCCCCC---
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 478999999999998754 233333333333223579999999999997543211 11122233333 37899999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++++++|.+.+..
T Consensus 181 ~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-20 Score=173.08 Aligned_cols=166 Identities=23% Similarity=0.215 Sum_probs=108.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
.|+++|++|||||||+|+|.+... .+.+.+++|.+.....+..++..+.+|||||+.......+...+ ..+...+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~a 258 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKYS 258 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHhC
Confidence 599999999999999999999876 46778888888777777777788999999997543222222223 3345568899
Q ss_pred cEEEEEecCCCCCc---hHHHHHHHhccccc-CCCCEEEEEeccCCCChhhH--HHHHHHH-Hhc-CCCCeEEEecCCCC
Q 018949 197 DCIVVLVDACKAPE---RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWY-EKF-TDVDEVIPVSAKYG 268 (348)
Q Consensus 197 d~iv~VvD~~~~~~---~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~--~~~~~~~-~~~-~~~~~i~~vSA~~g 268 (348)
|++++|+|++++.. .....+...+...+ .+.|+++|+||+|+.+.... ......+ ... ....+++++||++|
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR 338 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 99999999987641 11122233333221 57899999999999864311 1111111 222 22336899999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++|+++|.+.+..
T Consensus 339 ~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQ 354 (364)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcc
Confidence 9999999999987654
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=177.97 Aligned_cols=159 Identities=25% Similarity=0.323 Sum_probs=111.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCce------eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM 186 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~ 186 (348)
++..+|+++|++++|||||+++|++... ......+++|.+.....+..++..+.+|||||+. . +.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~--~-------~~ 87 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA--D-------LI 87 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH--H-------HH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH--H-------HH
Confidence 3556999999999999999999998761 1123444556555444455577899999999942 2 33
Q ss_pred HHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH----hc--CCCCeE
Q 018949 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE----KF--TDVDEV 260 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~----~~--~~~~~i 260 (348)
..+...+..+|++|+|+|++++...+.......+.. .++|+++|+||+|+.+..........+. .. ....++
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 455667899999999999998877666666666665 6789999999999987544333322222 21 123589
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (348)
+++||++|.|+++|+++|.+.+
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhh
Confidence 9999999999999999998865
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-21 Score=170.36 Aligned_cols=158 Identities=18% Similarity=0.137 Sum_probs=104.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. .....++....... +......+.+|||||. ..+.. ....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~ 97 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYDR-------LRPL 97 (204)
Confidence 4568999999999999999999987653 23333433333222 2334456779999994 33222 2334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++.. ......+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 578899999999998654 222223444444322479999999999997543111 11122222233
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 34789999999999999999987654
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=163.73 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC-------CCCceEEeEEEEEeCCC--eeEEEEeCCCCchh-----hhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KIHML 181 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~-----~~~~l 181 (348)
.+|+++|.+|+|||||+|+|++.+...... .+.++.......+..++ ..+.+|||||+.+. .+..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 489999999999999999999887654322 22233333333444433 58999999998432 12223
Q ss_pred HHHHHHHHHhhcc-------------CccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH
Q 018949 182 DSMMMKNVRSAGI-------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (348)
Q Consensus 182 ~~~~~~~~~~~~~-------------~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 247 (348)
...+...+..++. ++|+++++++.+. +....+..+...+.. ++|+|+|+||+|+....+....
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~~ 165 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQF 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHHH
Confidence 2222222222222 3789999987665 566666666666554 7999999999999877665444
Q ss_pred HHHHHhcC--CCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 248 LEWYEKFT--DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 248 ~~~~~~~~--~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
...+.... ...+++++||++++|+++++++|.+.++
T Consensus 166 ~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 166 KKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 33332211 2236789999999999999999999876
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=154.72 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=99.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCc-eEEeEEEEE-----eCCCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGIC-----SGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~-t~~~~~~~~-----~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
.+|+++|.+|||||||++++.+...........| ........+ ......+.+||||| +..+..+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~~~------ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAG--REEFYSTHP------ 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECS--HHHHHTTSH------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCC--CHHHHHhhH------
Confidence 4899999999999999999998632212222222 222222221 12457899999999 444443322
Q ss_pred HhhccCccEEEEEecCCCCC---chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH----HHHHHHHhcCCCC---e
Q 018949 190 RSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFTDVD---E 259 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~----~~~~~~~~~~~~~---~ 259 (348)
.++..+|++++|+|.+++. .....|+...... ..+.|+++|+||+|+....... .....+....+.. +
T Consensus 75 -~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
T 2zej_A 75 -HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD 152 (184)
T ss_dssp -HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEE
T ss_pred -HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhh
Confidence 3356789999999998763 2333444333222 2578999999999998765432 2223333333432 3
Q ss_pred EEEecCCCCC-CHHHHHHHHHHhCCC
Q 018949 260 VIPVSAKYGH-GVEDIRDWILTKLPL 284 (348)
Q Consensus 260 i~~vSA~~g~-gi~eL~~~i~~~l~~ 284 (348)
++++||++|. |+++|++.|.+.+..
T Consensus 153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 153 YHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred eEEEecccCchhHHHHHHHHHHHHhc
Confidence 8999999996 999999999887654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-20 Score=158.55 Aligned_cols=159 Identities=23% Similarity=0.268 Sum_probs=97.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|||||||+|++.+.....+...+.++.+.... .++.....+.+|||+|.... ...+. ..+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-~~~~~-------~~~ 77 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-NEWLH-------DHC 77 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----CTTG-------GGH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-hhhHH-------Hhh
Confidence 458999999999999999999975433233333332222222 33333456789999995321 12221 223
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++.+|++++|+|.++.. .....++..+... ...+.|+++|+||+|+.....+. .....+....+ .++++|||++|
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-~~~~e~SA~~g 156 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-XKFIETSAAVQ 156 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTT
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC-CceEEeccccC
Confidence 56789999999998643 3333333222221 11578999999999986432211 11122222233 47899999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|++++|+++.+.+
T Consensus 157 ~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 157 HNVKELFEGIVRQV 170 (192)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998866
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=171.46 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=107.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE------EEE--------Ee-----CCCeeEEEEeCCCCc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI------LGI--------CS-----GPEYQMILYDTPGII 174 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~------~~~--------~~-----~~~~~~~l~DtpG~~ 174 (348)
...+|+++|++|+|||||+|+|++...........++.... ... .. .....+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 44589999999999999999999853221100111110000 000 00 011579999999953
Q ss_pred hhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh
Q 018949 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (348)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 253 (348)
+ + ...+...+..+|++++|+|++++. ..+...+...+... ...|+++|+||+|+.+..........+..
T Consensus 87 ~--~-------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 87 V--L-------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp G--G-------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred H--H-------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHH
Confidence 3 2 233455678999999999999876 55555555555442 33589999999999987654444433333
Q ss_pred cC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 254 FT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 254 ~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.. ...+++++||++|.|+++|+++|.+.++.
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 21 24589999999999999999999997764
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-19 Score=171.10 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee------------------------------cCCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+++|++...... ....+.|.+.....+..++.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 445899999999999999999976532211 12246777777777778888
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCc-------hHHHHHHHhcccccCCCC-EEEEEec
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNK 235 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~-------~~~~~~~~~~~~~~~~~p-~ivv~NK 235 (348)
.+.+|||||+.+ +...+..++..+|++|+|+|++++.. .+.......+.. .++| +|+|+||
T Consensus 96 ~~~iiDTPGh~~---------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK 164 (439)
T 3j2k_7 96 HFTILDAPGHKS---------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINK 164 (439)
T ss_pred EEEEEECCChHH---------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeec
Confidence 999999999532 23445566789999999999998753 344445545444 5677 9999999
Q ss_pred cCCCCh----hhHHHHHHHH---HhcCC-----CCeEEEecCCCCCCHHHHHH
Q 018949 236 KDLIKP----GEIAKKLEWY---EKFTD-----VDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 236 ~Dl~~~----~~~~~~~~~~---~~~~~-----~~~i~~vSA~~g~gi~eL~~ 276 (348)
+|+... .........+ ....+ ..+++++||++|.|++++.+
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999642 1122222222 11222 35799999999999999654
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=178.74 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=87.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee---------------e------cCCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------V------TNKPQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~---------------~------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
+..+|+|+|++|+|||||+|+|++....+ . ....+.|.......+.+.+..+++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 34489999999999999999996211110 0 11134444444555667789999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+.+.. ..+..++..+|++|+|+|++++.......++..+.. .++|+++|+||+|+...
T Consensus 92 ~~df~---------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFT---------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCC---------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCCS
T ss_pred chhHH---------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccc
Confidence 64422 235567899999999999999888777777777766 68999999999999754
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=167.45 Aligned_cols=159 Identities=17% Similarity=0.106 Sum_probs=109.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||++++.+..+. ....+++.......+..++ ..+.+|||||.. .+..+ ...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~ 222 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE--DYDRL-------RPL 222 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG--GGTTT-------GGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCch--hhhHH-------HHH
Confidence 4468999999999999999999987653 3455566655554444443 456699999953 33322 334
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-------------HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++... .....+...+.....++|+++|+||+|+...... ......+....+
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 5789999999999987542 2222233333332258999999999998653211 111223333445
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
..++++|||++|.|++++++.|.+.+.
T Consensus 303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 458999999999999999999988654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=158.25 Aligned_cols=168 Identities=15% Similarity=0.236 Sum_probs=106.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCC--CceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP--QTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNV 189 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~ 189 (348)
+..+|+++|.+|||||||+|+|++..+. .+..+ ++|.......+...+..+.+|||||+.+... ......+...+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999999998874 33333 5677777777777888999999999865322 12233444555
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhccccc--CCCCEEEEEeccCCCChhhHHH-------HHH-HHHhcCCCCe
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEIAK-------KLE-WYEKFTDVDE 259 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~-------~~~-~~~~~~~~~~ 259 (348)
..++..+|++|+|+|+++.......++..+...++ ...|+++|+||+|+.....+.+ ... ....... .
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~--~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD--R 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS--S
T ss_pred HhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--E
Confidence 56678899999999997544433333333332211 3469999999999976544431 122 2223332 4
Q ss_pred EEEecCCC-----CCCHHHHHHHHHHhCCC
Q 018949 260 VIPVSAKY-----GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 260 i~~vSA~~-----g~gi~eL~~~i~~~l~~ 284 (348)
++.+++.. +.|+.+|+..+.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 56666553 36899999998887743
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-21 Score=190.10 Aligned_cols=207 Identities=18% Similarity=0.198 Sum_probs=130.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee--eecCCCCceEEeEEEEE---------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGIC--------------------------------- 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~~t~~~~~~~~--------------------------------- 158 (348)
..++|+|+|.+|+|||||+|+|++.++. .++..+.|++......-
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3458999999999999999999999875 45666766543211100
Q ss_pred ---eCCC---eeEEEEeCCCCchhhhhhhHHH--HHHHHHhhccCccEEEEEecCCCC-CchHHHHHHHhcccccCCCCE
Q 018949 159 ---SGPE---YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPI 229 (348)
Q Consensus 159 ---~~~~---~~~~l~DtpG~~~~~~~~l~~~--~~~~~~~~~~~ad~iv~VvD~~~~-~~~~~~~~~~~~~~~~~~~p~ 229 (348)
.... ..+.+|||||+.......+... +...+..++..+|++|+|+|+++. .......+...+.. .+.|+
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~pv 221 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HEDKI 221 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGGGE
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCCCE
Confidence 0000 3689999999864221111111 234455567899999999999873 45555556666655 56899
Q ss_pred EEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHH
Q 018949 230 LLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIRE 309 (348)
Q Consensus 230 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire 309 (348)
++|+||+|+....++......+.. ....++++|.... +...++.++.... +.+.+++..|+ |
T Consensus 222 ilVlNK~Dl~~~~el~~~~~~l~~--s~~~i~~vs~l~~-------------~~~~~~~~~~~~~-~~~~~~~~~E~--e 283 (550)
T 2qpt_A 222 RVVLNKADMVETQQLMRVYGALMW--ALGKVVGTPEVLR-------------VYIGSFWSQPLLV-PDNRRLFELEE--Q 283 (550)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHH--HHHHHHCCSSCCC-------------EEESCCSSSCCSS-CTTHHHHHHHH--H
T ss_pred EEEEECCCccCHHHHHHHHHHhhc--chhheeechHhhh-------------hccccCCCCcccC-CCCHHHHHHHH--H
Confidence 999999999987766555544431 0112233332211 1223444444444 67888888887 8
Q ss_pred HHHhhccCCCCceEEEE-eeEEEeccceEEEee
Q 018949 310 KIFMQYRNEVPYACQVC-NLTFQHWLIFVEFNA 341 (348)
Q Consensus 310 ~~~~~~~~eip~~~~~~-~~~~~~~~~~~~~~~ 341 (348)
+++..+ +++||+..+. ++.|..+...++|++
T Consensus 284 ~l~~~l-~elP~~~~v~~i~~~~~~~~~~~I~a 315 (550)
T 2qpt_A 284 DLFRDI-QGLPRHAALRKLNDLVKRARLVRVHA 315 (550)
T ss_dssp HHHHHH-HTTGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hhccHHHHHHHHHHHhccCCeEEEEE
Confidence 888885 9999999888 566654333344443
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.8e-21 Score=187.52 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=116.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+.++|+++|++|+|||||+++|.+..+.. ...+++|.+.....+.. .+..+.+|||||+. .+..+ ...+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe--~f~~~-------~~~~ 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHA--AFSAM-------RARG 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC--CTTTS-------BBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChH--HHHHH-------HHHH
Confidence 56789999999999999999999877653 35666676655444444 45689999999953 33322 2245
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHHH----hcCCCCeEEEecCC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYE----KFTDVDEVIPVSAK 266 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~----~~~~~~~i~~vSA~ 266 (348)
+..+|++|+|+|++++...+....+..+.. .++|+++|+||+|+.... .......... ...+..+++++||+
T Consensus 73 ~~~aD~vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 73 TQVTDIVILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SBSBSSCEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HccCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 788999999999999887777666666666 689999999999997532 1111111111 11223489999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 018949 267 YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+++|+++|...+.
T Consensus 151 tG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 151 TGENMMALAEATIALAE 167 (537)
T ss_dssp SSCSSHHHHHHHHHHHT
T ss_pred CCCCchhHHHHHHHhhh
Confidence 99999999999988764
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-20 Score=184.93 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=89.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec------------------------------CCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+|+|++....+.. ..+++|.......+..++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 4558999999999999999999753222111 1346676666666667778
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-------chHHHHHHHhcccccCCCC-EEEEEec
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNK 235 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p-~ivv~NK 235 (348)
.+.+|||||+.+.... +..++..+|++|+|+|++.+. ..+.......+.. .++| +|+|+||
T Consensus 256 ~i~iiDTPGh~~f~~~---------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNK 324 (592)
T 3mca_A 256 IYEIGDAPGHRDFISG---------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNK 324 (592)
T ss_dssp ---CCEEESSSEEEEE---------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEEC
T ss_pred EEEEEECCChHHHHHH---------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEec
Confidence 8999999997542211 223467899999999998743 4455555555555 5666 9999999
Q ss_pred cCCCC--hhhHHHHHHHHHh----cCCC----CeEEEecCCCCCCHH--------------HHHHHHHHhCC
Q 018949 236 KDLIK--PGEIAKKLEWYEK----FTDV----DEVIPVSAKYGHGVE--------------DIRDWILTKLP 283 (348)
Q Consensus 236 ~Dl~~--~~~~~~~~~~~~~----~~~~----~~i~~vSA~~g~gi~--------------eL~~~i~~~l~ 283 (348)
+|+.+ ..........+.. ..+. .+++++||++|.|+. .|++.|...++
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 99975 3333333333332 2233 379999999999998 78888877654
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-18 Score=163.04 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=107.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEEE---EEe----------------CC----CeeEEEE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG---ICS----------------GP----EYQMILY 168 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~~---~~~----------------~~----~~~~~l~ 168 (348)
...+|+++|++++|||||+++|++..... ....++.|...... ... .. ...+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34589999999999999999999753211 12223444432211 110 00 1679999
Q ss_pred eCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH
Q 018949 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (348)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 247 (348)
||||+. . +...+...+..+|++|+|+|++++. ..+....+..+... ...|+++|+||+|+.+.......
T Consensus 89 DtPGh~--~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 89 DAPGHE--A-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp ECSSHH--H-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHH
T ss_pred ECCChH--H-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHH
Confidence 999942 2 2344556678999999999999875 55544444444432 33589999999999876543222
Q ss_pred HHHHHhc-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 248 LEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 248 ~~~~~~~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
...+... ....+++++||++|.|+++|+++|.+.++.
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 2222221 134589999999999999999999998764
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=164.50 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=106.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|+|||||+++|+ ..+.|.......+..++..+.+|||||+.+ + ...+...+..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~--f-------~~~~~~~~~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK--T-------LKSLITALNIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT--C-------HHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH--H-------HHHHHHHHHHC
Confidence 79999999999999999998 122233333344566778899999999643 2 22344456899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEe-ccCCCChhhHHHHHHHHHhcC-----CCCeEEE--ecCCC
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLN-KKDLIKPGEIAKKLEWYEKFT-----DVDEVIP--VSAKY 267 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~N-K~Dl~~~~~~~~~~~~~~~~~-----~~~~i~~--vSA~~ 267 (348)
|++|+|+| +.+...+...+...+.. .++|. ++|+| |+|+ +..........+.... ...++++ +||++
T Consensus 85 D~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 85 DIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp SEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred CEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 99999999 87777766666666655 57888 99999 9999 6544333333333322 2358999 99999
Q ss_pred ---CCCHHHHHHHHHHhCC
Q 018949 268 ---GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 ---g~gi~eL~~~i~~~l~ 283 (348)
|.|+++|++.|.+.++
T Consensus 161 ~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 161 KNPFEGVDELKARINEVAE 179 (370)
T ss_dssp SSTTTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhhcc
Confidence 9999999999988764
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=9.6e-19 Score=168.26 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=112.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC--------ceeee--c------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIV--T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~--------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (348)
...+|+++|++|+|||||+++|++. .+... . ...+.|.......+...+..+.+|||||+.+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence 3458999999999999999999873 11100 0 1234455554555666778999999999643
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhh-HHH---HHHHHH
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IAK---KLEWYE 252 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~~---~~~~~~ 252 (348)
+ ...+..++..+|++|+|+|++++...+...++..+.. .++| +++|+||+|+....+ .+. ....+.
T Consensus 88 f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 88 Y-------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp G-------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 2 2334556789999999999998877666666666665 5788 889999999985222 221 122222
Q ss_pred hcCC----CCeEEEecCCCCCC------------------HHHHHHHHHHhCCC
Q 018949 253 KFTD----VDEVIPVSAKYGHG------------------VEDIRDWILTKLPL 284 (348)
Q Consensus 253 ~~~~----~~~i~~vSA~~g~g------------------i~eL~~~i~~~l~~ 284 (348)
...+ ..+++++||++|.| +.+|++.|.+.++.
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 2222 36899999999987 88899999887764
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=172.94 Aligned_cols=158 Identities=26% Similarity=0.318 Sum_probs=105.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee--------ecC------CCCceEEeEEEE--Ee---CCCeeEEEEeCCCCch
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGI--CS---GPEYQMILYDTPGIIE 175 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~--------~~~------~~~~t~~~~~~~--~~---~~~~~~~l~DtpG~~~ 175 (348)
..+|+|+|++|+|||||+++|++..... ..+ ..+.|....... +. ...+.+++|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4489999999999999999997532111 001 112222211111 22 2247899999999754
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 255 (348)
.. ..+..++..+|++|+|+|++++.+.+....+..... .++|+++|+||+|+.... .......+....
T Consensus 86 F~---------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~-~~~v~~el~~~l 153 (600)
T 2ywe_A 86 FS---------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL 153 (600)
T ss_dssp GH---------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS
T ss_pred HH---------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC-HHHHHHHHHHhh
Confidence 32 223445689999999999999886665555444444 689999999999998643 333445555544
Q ss_pred CCC--eEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 256 DVD--EVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 256 ~~~--~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+.. +++++||++|.|+++|+++|.+.++.
T Consensus 154 g~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 154 GLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp CCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 442 58999999999999999999999875
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=145.15 Aligned_cols=165 Identities=23% Similarity=0.230 Sum_probs=103.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-----hhhHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-----HMLDSMMMK 187 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-----~~l~~~~~~ 187 (348)
+..+|+++|++|||||||+|++++.. ...+.+++++|.......+. + .+.+|||||+..... .... ....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~-~~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA--D-GKRLVDLPGYGYAEVPEEMKRKWQ-RALG 100 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE--T-TEEEEECCCCC------CCHHHHH-HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec--C-CEEEEECcCCcccccCHHHHHHHH-HHHH
Confidence 45589999999999999999999987 34445667776653322222 2 588999999743110 0111 1112
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH----HHHHHHHhcCCCCeEEEe
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~i~~v 263 (348)
.+......++.+++|+|++.+.......+..++.. .+.|+++|.||+|+.+..+.. .....+........++++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 23333467899999999988765544444444444 678999999999998754322 222233333334578999
Q ss_pred cCCCCCCHHHHHHHHHHhCCC
Q 018949 264 SAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~ 284 (348)
||+++.|++++++.|.+.+..
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC-
T ss_pred eecCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987755
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-18 Score=162.01 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=99.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEEE---EEe--------C----C--------CeeEEEE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG---ICS--------G----P--------EYQMILY 168 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~~---~~~--------~----~--------~~~~~l~ 168 (348)
...+|+++|++++|||||+++|++..... ....++.|...... ... . . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 34589999999999999999999754211 11223334322111 110 0 1 1679999
Q ss_pred eCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhh----
Q 018949 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---- 243 (348)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---- 243 (348)
||||+ .. +...+...+..+|++|+|+|++++. ..+.......+... ...|+++|+||+|+.+...
T Consensus 87 DtPGh--~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 87 DSPGH--ET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp ECSSH--HH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTTTTTH
T ss_pred ECCCH--HH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHHHHHH
Confidence 99994 22 2344556678899999999999875 44444444444432 2358999999999986432
Q ss_pred HHHHHHHHHhc-CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 244 IAKKLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 244 ~~~~~~~~~~~-~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.++....+... ....+++++||++|.|+++|+++|.+.++.
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 22222222221 234589999999999999999999997764
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=172.19 Aligned_cols=158 Identities=23% Similarity=0.272 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee--------ec------CCCCceEEeEEEEEe-----CCCeeEEEEeCCCCch
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGICS-----GPEYQMILYDTPGIIE 175 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~--------~~------~~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~~~ 175 (348)
..+|+|+|++++|||||+++|+...... .. ...+.|.......+. ...+.+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3489999999999999999998632111 00 112333332222222 2247899999999754
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 255 (348)
.. ..+..++..+|++|+|+|++++...+....+..... .++|+++|+||+|+.... .......+....
T Consensus 84 F~---------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l 151 (599)
T 3cb4_D 84 FS---------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV 151 (599)
T ss_dssp GH---------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT
T ss_pred HH---------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCccccc-HHHHHHHHHHHh
Confidence 22 224455778999999999998876655544444444 679999999999998643 222333444433
Q ss_pred CC--CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 256 ~~--~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+. .+++++||++|.|+++|+++|.+.++.
T Consensus 152 g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 152 GIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp CCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred CCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 33 358999999999999999999999875
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-18 Score=173.95 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=99.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE-E------EE----eCCCeeEEEEeCCCCchhhhhhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-G------IC----SGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~-~------~~----~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
.+..+|+++|.+|||||||+|++++.++.. ....|...... . .+ ...+..+.+||||| +..+..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~--~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G--~e~~~~~ 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDP--KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG--QEIMHAS 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCS--CCTTTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEeccccccceeecCCCceEEEEEEECCc--HHHHHHH
Confidence 355699999999999999999999987541 12222211111 1 11 12357899999999 4444444
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeE
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEV 260 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i 260 (348)
...+ +..+|++|+|+|+++. ... ..+...+.....+.|+|+|+||+|+.....+ .+.........+ .++
T Consensus 115 ~~~~-------l~~~d~ii~V~D~s~~-~~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~ 184 (535)
T 3dpu_A 115 HQFF-------MTRSSVYMLLLDSRTD-SNK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIE-NRF 184 (535)
T ss_dssp CHHH-------HHSSEEEEEEECGGGG-GGH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGT-TCE
T ss_pred HHHH-------ccCCcEEEEEEeCCCc-hhH-HHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcC-Cce
Confidence 3333 5679999999999764 333 3344444443457999999999999764332 112222222223 379
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCCCCC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (348)
+++||++|.|+++|++.|.+.+...+.
T Consensus 185 ~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 185 HRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp EECCC-----CTTHHHHHHHHHTCTTS
T ss_pred EEEecCcccCHHHHHHHHHHHHhcccc
Confidence 999999999999999999998876544
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-18 Score=161.05 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=111.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCce-------ee--------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKL-------SI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~-------~~--------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+|+++|++|+|||||+++|++... .. .....+.|.......+..++..+.+|||||+.+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~----- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD----- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-----
Confidence 4899999999999999999986310 00 011334555554445666778999999999532
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhh-HH---HHHHHHHhcC
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA---KKLEWYEKFT 255 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~---~~~~~~~~~~ 255 (348)
+...+..++..+|++|+|+|++++...+....+..+.. .++| +++|+||+|+.+..+ .+ .....+....
T Consensus 79 ----f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 152 (397)
T 1d2e_A 79 ----YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF 152 (397)
T ss_dssp ----HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHc
Confidence 23345667899999999999998876666665565555 6788 689999999985221 11 1122222222
Q ss_pred C----CCeEEEecCCCCCC----------HHHHHHHHHHhCCC
Q 018949 256 D----VDEVIPVSAKYGHG----------VEDIRDWILTKLPL 284 (348)
Q Consensus 256 ~----~~~i~~vSA~~g~g----------i~eL~~~i~~~l~~ 284 (348)
+ ..+++++||++|.| +.+|++.|.+.++.
T Consensus 153 ~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 2 35899999999775 89999999998864
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-19 Score=170.49 Aligned_cols=186 Identities=21% Similarity=0.314 Sum_probs=114.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCceE-------------------------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTR------------------------------------- 151 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~t~------------------------------------- 151 (348)
...|+|+|+||||||||+|+|++ .+.......+.+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 55899999999999999999985 33333333332221
Q ss_pred EeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCE
Q 018949 152 HRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI 229 (348)
Q Consensus 152 ~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ 229 (348)
.....+ +...+..+.++||||+.+.. . .....+|++++|+|++.+... ..+...+ ...|.
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~~-~-----------~l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ 215 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQSE-F-----------AVADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMAD 215 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--CH-H-----------HHHTTCSEEEEEECCC------------------CCSCS
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchhh-h-----------hHHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCC
Confidence 000000 12356789999999975321 1 114689999999999765321 1111111 24688
Q ss_pred EEEEeccCCCChhhHHHHHHHH----HhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCC---
Q 018949 230 LLVLNKKDLIKPGEIAKKLEWY----EKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEH--- 297 (348)
Q Consensus 230 ivv~NK~Dl~~~~~~~~~~~~~----~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~--- 297 (348)
++|+||+|+.+..........+ .... ...+++++||++|.|+++|+++|.+.+.. .++....+..
T Consensus 216 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~---~~~~~~~~~~R~~ 292 (349)
T 2www_A 216 LVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL---MLASGELTAKRRK 292 (349)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH---HHHHSHHHHHHHH
T ss_pred EEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH---HhhCchHHHHHHH
Confidence 9999999997543322222222 1111 13478999999999999999999887643 2222333332
Q ss_pred chHHHHHHHHHHHHHhhccCCCCc
Q 018949 298 PERFFVGEIIREKIFMQYRNEVPY 321 (348)
Q Consensus 298 ~~~~~~~e~ire~~~~~~~~eip~ 321 (348)
+.++++.+.++++++..+.+++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~ 316 (349)
T 2www_A 293 QQKVWMWNLIQESVLEHFRTHPTV 316 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcch
Confidence 566789999999999888888775
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-19 Score=175.49 Aligned_cols=149 Identities=20% Similarity=0.251 Sum_probs=99.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc--ee----------------------eecC------CCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LS----------------------IVTN------KPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~--~~----------------------~~~~------~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+|+|++.. +. .+.+ ..+.|.......+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 34589999999999999999998641 00 0001 245555554455677788
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCch-------HHHHHHHhcccccCCCC-EEEEEec
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-------IDEILEEGVGDHKDKLP-ILLVLNK 235 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~-------~~~~~~~~~~~~~~~~p-~ivv~NK 235 (348)
.+.+|||||+.+ +...+..++..+|++|+|+|++++... +.......+.. .++| +|+|+||
T Consensus 86 ~~~iiDtPGh~~---------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK 154 (458)
T 1f60_A 86 QVTVIDAPGHRD---------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNK 154 (458)
T ss_dssp EEEEEECCCCTT---------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEEC
T ss_pred eEEEEECCCcHH---------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEc
Confidence 999999999532 234456678999999999999865422 33334444444 5666 8999999
Q ss_pred cCCCC--hhhHHHHHHHHH---hcCC----CCeEEEecCCCCCCHHH
Q 018949 236 KDLIK--PGEIAKKLEWYE---KFTD----VDEVIPVSAKYGHGVED 273 (348)
Q Consensus 236 ~Dl~~--~~~~~~~~~~~~---~~~~----~~~i~~vSA~~g~gi~e 273 (348)
+|+.+ ..........+. ...+ ..+++++||++|.|+.+
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 99983 322222222221 2222 25899999999999874
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-19 Score=167.15 Aligned_cols=184 Identities=19% Similarity=0.235 Sum_probs=115.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCceEEe-----------------EEEE-------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR-----------------ILGI------------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~-----------------~~~~------------- 157 (348)
+..+|+++|.+|+|||||+++|. |.++..+...+.++... ...+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45589999999999999999985 44444444333333200 0000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC
Q 018949 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (348)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (348)
+...+..+.+|||||+.+... ..+..+|++++|+|+....... .+ .....+.|
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~------------~~~~~aD~vl~V~d~~~~~~~~--~l----~~~~~~~p 219 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEV------------AVANMVDTFVLLTLARTGDQLQ--GI----KKGVLELA 219 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHH------------HHHTTCSEEEEEEESSTTCTTT--TC----CTTSGGGC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHH------------HHHHhCCEEEEEECCCCCccHH--HH----HHhHhhcC
Confidence 123567899999999754211 1247999999999986543221 11 11113469
Q ss_pred EEEEEeccCCCChhhHHHHHHHHHhc----C----C-CCeEEEecCCCCCCHHHHHHHHHHhCCC--CCCCCCCcccCCC
Q 018949 229 ILLVLNKKDLIKPGEIAKKLEWYEKF----T----D-VDEVIPVSAKYGHGVEDIRDWILTKLPL--GPAYYPKDIVSEH 297 (348)
Q Consensus 229 ~ivv~NK~Dl~~~~~~~~~~~~~~~~----~----~-~~~i~~vSA~~g~gi~eL~~~i~~~l~~--~~~~~~~~~~~~~ 297 (348)
+++|+||+|+.+..........+... . + ..+++++||++|.|+++|+++|.+.+.. .+..++. ....
T Consensus 220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~~~--~r~~ 297 (355)
T 3p32_A 220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDA--RRRD 297 (355)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHHTTHHHH--HHHH
T ss_pred CEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhcCchHHH--HHHH
Confidence 99999999997654443333333221 1 1 2589999999999999999999987753 2222222 1122
Q ss_pred chHHHHHHHHHHHHHhhccC
Q 018949 298 PERFFVGEIIREKIFMQYRN 317 (348)
Q Consensus 298 ~~~~~~~e~ire~~~~~~~~ 317 (348)
...+++.+.++++++..+.+
T Consensus 298 ~~~~~~~e~i~e~l~~~~~~ 317 (355)
T 3p32_A 298 QQVDWTWQLVRDAVLDRVWS 317 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35567889999998876654
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=168.50 Aligned_cols=151 Identities=19% Similarity=0.133 Sum_probs=101.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee------------------------------eecCCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+|+|++.... ......+.|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 3458999999999999999999754111 1122345666666666777889
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-------CchHHHHHHHhcccccCCCCEEEEEecc
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKK 236 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-------~~~~~~~~~~~~~~~~~~~p~ivv~NK~ 236 (348)
.+.+|||||+.+ +...+..++..+|++|+|+|++++ ...+.......+... ...|+|+|+||+
T Consensus 112 ~~~iiDTPG~~~---------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~ 181 (483)
T 3p26_A 112 NFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKM 181 (483)
T ss_dssp EEEEECCCCCGG---------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECG
T ss_pred eEEEEECCCcHH---------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECc
Confidence 999999999633 223455667899999999999886 334455555555442 235699999999
Q ss_pred CCCCh--hhHHHHHHHHHh----cC---CCCeEEEecCCCCCCHHHH
Q 018949 237 DLIKP--GEIAKKLEWYEK----FT---DVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 237 Dl~~~--~~~~~~~~~~~~----~~---~~~~i~~vSA~~g~gi~eL 274 (348)
|+.+. ...++....+.. .. ...+++++||++|.|++++
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 99862 222222222221 11 1358999999999999864
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-20 Score=179.25 Aligned_cols=156 Identities=20% Similarity=0.272 Sum_probs=108.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
|.++|+++|++++|||||+++|.+..+. ....++.|.+.....+..++..+.+|||||+. .+..+ ....+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe--~f~~~-------~~~~~ 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHA--AFTSM-------RARGA 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTT--CCTTS-------BCSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcH--HHHHH-------HHHHH
Confidence 6679999999999999999999876543 23334555544333455567789999999953 33332 22447
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHH---H-HhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEW---Y-EKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~---~-~~~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++...+....+..+.. .++|+++|+||+|+.... .+...+.. + ....+..+++++||++
T Consensus 73 ~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAkt 150 (501)
T 1zo1_I 73 QATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA 150 (501)
T ss_dssp BSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTT
T ss_pred hhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeee
Confidence 88999999999988765555555555555 679999999999997532 11100000 0 0111235899999999
Q ss_pred CCCHHHHHHHHHHh
Q 018949 268 GHGVEDIRDWILTK 281 (348)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (348)
|.|+++|+++|...
T Consensus 151 G~gI~eLle~I~~~ 164 (501)
T 1zo1_I 151 GTGIDELLDAILLQ 164 (501)
T ss_dssp CTTCTTHHHHTTTT
T ss_pred ccCcchhhhhhhhh
Confidence 99999999998754
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=160.73 Aligned_cols=148 Identities=21% Similarity=0.183 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee----------ecCCCC----------------------ceEEeEEEEEeCCCe
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI----------VTNKPQ----------------------TTRHRILGICSGPEY 163 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~----------~~~~~~----------------------~t~~~~~~~~~~~~~ 163 (348)
.+|+++|++|+|||||+++|++..... .+..++ .|.......+..++.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 489999999999999999998654211 111222 233333344566778
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCC-CEEEEEeccCCCCh-
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKP- 241 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~NK~Dl~~~- 241 (348)
.+.+|||||+.+ +. ..+..++..+|++|+|+|++++...+...+...+.. .+. |+|+|+||+|+.+.
T Consensus 105 ~~~iiDtpGh~~--f~-------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~--~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 105 KFIIADTPGHEQ--YT-------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--LGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp EEEEEECCCSGG--GH-------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEEECTTTTTSC
T ss_pred eEEEEECCChHH--HH-------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEEcCcCCccc
Confidence 899999999643 22 223345789999999999998876666555555554 344 59999999999862
Q ss_pred -hhHH---HHHHHHHhcCC----CCeEEEecCCCCCCHHHH
Q 018949 242 -GEIA---KKLEWYEKFTD----VDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 242 -~~~~---~~~~~~~~~~~----~~~i~~vSA~~g~gi~eL 274 (348)
.... .....+....+ ..+++++||++|.|++++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 2222 22222222333 257999999999999874
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-18 Score=171.82 Aligned_cols=158 Identities=21% Similarity=0.245 Sum_probs=105.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe------------------CCCeeEEEEeCCCCch
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------GPEYQMILYDTPGIIE 175 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~~~l~DtpG~~~ 175 (348)
+.++|+++|++|+|||||+++|++..+... ...+.|.+.....+. .....+.+|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~-e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe- 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR-EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE- 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS-
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc-cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH-
Confidence 667999999999999999999997654311 111222221111111 112259999999964
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh-------------
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------------- 242 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~------------- 242 (348)
.+..+ ...++..+|++|+|+|++++...+....+..++. .++|+++|+||+|+....
T Consensus 82 -~F~~~-------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 82 -AFTTL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp -CCTTS-------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred -HHHHH-------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEecccccccccccccCCchHHHHH
Confidence 33332 1234678999999999999887776666666666 789999999999996421
Q ss_pred ----hH----H----HHHHHHHhc-------------CCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 243 ----EI----A----KKLEWYEKF-------------TDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 243 ----~~----~----~~~~~~~~~-------------~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+ . +....+... ....+++++||++|.|+++|+++|...++
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11 1 111222211 22348999999999999999999987654
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-18 Score=173.34 Aligned_cols=162 Identities=22% Similarity=0.214 Sum_probs=109.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCc--------------eEEeEEE----E---------EeCCC----
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT--------------TRHRILG----I---------CSGPE---- 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~--------------t~~~~~~----~---------~~~~~---- 162 (348)
...+|+|+|.+|+|||||+|+|+|.++.+++..|+| |.....+ . +...+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 345899999999999999999999988777777766 2211000 0 00000
Q ss_pred --------------------------eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHH-
Q 018949 163 --------------------------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI- 215 (348)
Q Consensus 163 --------------------------~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~- 215 (348)
..+.+|||||+.+.. . ....+..++..+|++|||+|++++.......
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~--~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~ 221 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE--A----RNELSLGYVNNCHAILFVMRASQPCTLGERRY 221 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH--T----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh--h----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHH
Confidence 369999999975422 1 1234556778999999999998876554433
Q ss_pred HHHhcccccCCCCEEEEEeccCCCChh--------hHHH----HH----HHHHhcC-------CCCeEEEecCC------
Q 018949 216 LEEGVGDHKDKLPILLVLNKKDLIKPG--------EIAK----KL----EWYEKFT-------DVDEVIPVSAK------ 266 (348)
Q Consensus 216 ~~~~~~~~~~~~p~ivv~NK~Dl~~~~--------~~~~----~~----~~~~~~~-------~~~~i~~vSA~------ 266 (348)
+...+.. .+.|+++|+||+|+.... .+.. .. ..+.... ...++++|||+
T Consensus 222 l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 222 LENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp HHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred HHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 3344544 578999999999986542 1111 11 1122221 12379999999
Q ss_pred --------CCCCHHHHHHHHHHhCC
Q 018949 267 --------YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 --------~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+++|++.+.+.+.
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988663
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=143.24 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=100.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|||||||++++.+..+.... .+..+.......+..+ ...+.+|||||. ..+..+.. .+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~--~~~~~~~~-------~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ--ERYRRITS-------AY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSG--GGTTCCCH-------HH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCc--hhhhhhhH-------HH
Confidence 348999999999999999999998764322 2222222222333333 357889999994 33333222 23
Q ss_pred ccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..++++++|+|.+.... ....++.........+.|+++|+||+|+...... ......+....+ ..++.+||+++.
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-~~~~d~Sal~~~ 153 (199)
T 2f9l_A 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDST 153 (199)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 568899999999976432 2222332222211256899999999999643211 111223333333 378999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++++.|.+.+.
T Consensus 154 ~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 154 NVEEAFKNILTEIY 167 (199)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987663
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=161.05 Aligned_cols=117 Identities=22% Similarity=0.253 Sum_probs=83.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee---------------ec------CCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VT------NKPQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~---------------~~------~~~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
+..+|+|+|++|+|||||+++|++..... +. ...+.|.......+.+++..+++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 34589999999999999999998632111 00 1222333333334566788999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+.+. . ..+..++..+|++|+|+|++++.......+...+.. .++|+++|+||+|+...
T Consensus 92 ~~df--~-------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 92 HEDF--S-------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp STTC--C-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred ChhH--H-------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 6432 2 234566889999999999999887777777777666 68999999999999754
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-18 Score=155.97 Aligned_cols=167 Identities=15% Similarity=0.147 Sum_probs=97.9
Q ss_pred CCccEEEEEcCC---------CCChHHHHHHHhCC---ceeeecCCCCce--EEeEE----------------EEEeCCC
Q 018949 113 HKSGYVAVLGKP---------NVGKSTLANQMIGQ---KLSIVTNKPQTT--RHRIL----------------GICSGPE 162 (348)
Q Consensus 113 ~~~~~v~i~G~~---------~~GKSsLin~l~~~---~~~~~~~~~~~t--~~~~~----------------~~~~~~~ 162 (348)
.+..+|+++|.+ |||||||+|++++. .+. .....+| ..... ..++...
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~--~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFH--LDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCC--SCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccc--cccCCcccccccceeEeecccccccccccccccCCcE
Confidence 345699999999 99999999999984 332 2222222 11000 0023345
Q ss_pred eeEEEEe------CCCCchhhhhhhHHHHHH--------HHHhhcc---------------------CccEEEEEecCCC
Q 018949 163 YQMILYD------TPGIIEKKIHMLDSMMMK--------NVRSAGI---------------------NADCIVVLVDACK 207 (348)
Q Consensus 163 ~~~~l~D------tpG~~~~~~~~l~~~~~~--------~~~~~~~---------------------~ad~iv~VvD~~~ 207 (348)
..+.+|| |||........+...+.. ....++. .||++|+|+|+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 6788888 666533222111111000 0011122 6999999999987
Q ss_pred C--C--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 208 A--P--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 208 ~--~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
. . .....++...... ...+.|+++|+||+|+.....+.+ ...+.......+++++||++|.|+++++++|.+.+
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~-~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRD-AHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHH-HHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHH-HHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5 2 3333444333322 125799999999999987655533 33333332234899999999999999999998754
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=160.55 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=96.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee------------------------------cCCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+++|++...... ....++|.......+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 345899999999999999999986421100 01345566655555677788
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-------CchHHHHHHHhcccccCCC-CEEEEEec
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKL-PILLVLNK 235 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-------~~~~~~~~~~~~~~~~~~~-p~ivv~NK 235 (348)
.+.+|||||+.+ + ...+..++..+|++|+|+|++++ ...+.......+.. .+. |+++|+||
T Consensus 85 ~~~iiDtpG~~~--f-------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK 153 (435)
T 1jny_A 85 FFTIIDAPGHRD--F-------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNK 153 (435)
T ss_dssp EEEECCCSSSTT--H-------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEEC
T ss_pred EEEEEECCCcHH--H-------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEc
Confidence 999999999643 2 23355678999999999999986 43444555444444 344 68999999
Q ss_pred cCCCCh----hhHH---HHHHHHHhcCC----CCeEEEecCCCCCCHHHH
Q 018949 236 KDLIKP----GEIA---KKLEWYEKFTD----VDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 236 ~Dl~~~----~~~~---~~~~~~~~~~~----~~~i~~vSA~~g~gi~eL 274 (348)
+|+.+. .... +....+....+ ..+++++||++|.|+.++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 999862 2112 22222222222 258999999999999754
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=160.35 Aligned_cols=162 Identities=25% Similarity=0.321 Sum_probs=113.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhh--hhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~~~ 193 (348)
.|+|+|++|||||||+++|++.... +..++.+|.....+.+...+ ..+.++||||+.+... ..+... +...+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~-i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~----fl~~~ 233 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLE----FLRHI 233 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHH----HHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHcCCcc-ccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHH----HHHHH
Confidence 6999999999999999999998764 56778888777777777664 7899999999854221 122222 23345
Q ss_pred cCccEEEEEecCC-CCCchHHHHHHH---hcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDAC-KAPERIDEILEE---GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~-~~~~~~~~~~~~---~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..++.+++|+|++ .+.........+ +...+ ...|.++|+||+|+............+.. .+ .+++.+||++++
T Consensus 234 era~~lL~vvDls~~~~~~ls~g~~el~~la~aL-~~~P~ILVlNKlDl~~~~~~~~l~~~l~~-~g-~~vi~iSA~~g~ 310 (416)
T 1udx_A 234 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEAVKALADALAR-EG-LAVLPVSALTGA 310 (416)
T ss_dssp TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHHHHHHHHHHHT-TT-SCEEECCTTTCT
T ss_pred HHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHh-hcCCEEEEEECCChhhHHHHHHHHHHHHh-cC-CeEEEEECCCcc
Confidence 7899999999997 222222222111 11111 35899999999999876333333333332 22 379999999999
Q ss_pred CHHHHHHHHHHhCCCCC
Q 018949 270 GVEDIRDWILTKLPLGP 286 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~ 286 (348)
|+++|+++|.+.+...+
T Consensus 311 gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 311 GLPALKEALHALVRSTP 327 (416)
T ss_dssp THHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999886543
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=160.70 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=87.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee---------------eecCC------CCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNK------PQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~---------------~~~~~------~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
|..+|+|+|+.++|||||..+|+..... .+++. .+.|.......+.++++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4458999999999999999998622111 01111 12233333344678899999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+.+.. ..+.+.++-+|++|+|||+..+.+.+.+.+++.+.. .++|.++++||+|....
T Consensus 110 HvDF~---------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFS---------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCS---------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCCC
T ss_pred cHHHH---------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchhc
Confidence 87654 335566789999999999999999999999988888 89999999999998754
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-18 Score=159.76 Aligned_cols=184 Identities=19% Similarity=0.302 Sum_probs=114.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCceEEe--------------------EEEE----------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR--------------------ILGI---------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~--------------------~~~~---------- 157 (348)
+...|+++|++|+|||||+|.|. +.+...+...+.++... ....
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 44589999999999999999996 44555555445443210 0000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC
Q 018949 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (348)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (348)
+...+.++.++||||+.+.... ....+|++++|+|++.+... ..++....+.|
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~------------~~~~aD~vl~Vvd~~~~~~~------~~l~~~~~~~p 196 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSETE------------VARMVDCFISLQIAGGGDDL------QGIKKGLMEVA 196 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHHH------------HHTTCSEEEEEECC------------CCCCHHHHHHC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchHHH------------HHHhCCEEEEEEeCCccHHH------HHHHHhhhccc
Confidence 0134678999999998653210 14799999999999754210 11110002468
Q ss_pred EEEEEeccCCCChhhHHHHHHHHHh----cCC-----CCeEEEecCCCCCCHHHHHHHHHHhCC---CCCCCCCCcccCC
Q 018949 229 ILLVLNKKDLIKPGEIAKKLEWYEK----FTD-----VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVSE 296 (348)
Q Consensus 229 ~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~-----~~~i~~vSA~~g~gi~eL~~~i~~~l~---~~~~~~~~~~~~~ 296 (348)
.++|+||+|+............+.. ... ..+++++||++|.|+++|+++|.+.+. .. ..+|. .. .
T Consensus 197 ~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~-~~~~~-~r-~ 273 (341)
T 2p67_A 197 DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS-GRLQQ-VR-Q 273 (341)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHT-THHHH-HH-H
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhC-ChHHH-HH-H
Confidence 8999999999875444332222221 111 347899999999999999999988664 21 12221 11 1
Q ss_pred CchHHHHHHHHHHHHHhhccCC
Q 018949 297 HPERFFVGEIIREKIFMQYRNE 318 (348)
Q Consensus 297 ~~~~~~~~e~ire~~~~~~~~e 318 (348)
...++++.|.+++++++.+.++
T Consensus 274 ~~~~~~~~e~i~e~l~~~~~~~ 295 (341)
T 2p67_A 274 QQSVEWLRKQTEEEVLNHLFAN 295 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 2355678888999999888765
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-17 Score=164.57 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=81.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|++|+|||||+++|+...... +.+ ..+.|.......+.+.+..+++|||||+.+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45589999999999999999998321110 011 2234444444455667889999999996432
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
. ..+..++..+|++|+|+|++.+.......++..+.. .++|+++|+||+|+...
T Consensus 91 --~-------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 91 --T-------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp --H-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred --H-------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccC
Confidence 1 234455788999999999998887766666655555 68999999999999753
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=168.18 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=109.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCce-------e--------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL-------S--------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~-------~--------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (348)
....+|+++|++|+|||||+++|++... . ......+.|.......+..++..+.+|||||+. .
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe--d 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA--D 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH--H
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH--H
Confidence 3456899999999999999999986410 0 001233444444334456677899999999953 2
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhh-HH---HHHHHHH
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA---KKLEWYE 252 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~---~~~~~~~ 252 (348)
+...+..++..+|++|+|+|++++...+...++..+.. .++| +|+|+||+|+.+..+ .+ .....+.
T Consensus 372 -------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 372 -------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp -------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 23445667899999999999998876666555555555 5788 789999999986322 11 1222222
Q ss_pred hcCC----CCeEEEecCCCC--------CCHHHHHHHHHHhCCC
Q 018949 253 KFTD----VDEVIPVSAKYG--------HGVEDIRDWILTKLPL 284 (348)
Q Consensus 253 ~~~~----~~~i~~vSA~~g--------~gi~eL~~~i~~~l~~ 284 (348)
...+ ..+++++||++| .|+++|++.|.+.++.
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 2222 358999999999 5799999999988764
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-17 Score=150.49 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=100.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
||+++|..|||||||++++.+..........+.|.......+. ....+.+||||| ++.+... .+ ....+++.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAG--QErf~~~--~l--~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPG--QLNYFEP--SY--DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCS--CSSSCCC--SH--HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCC--chhccch--hh--hhhhhccCC
Confidence 5899999999999999988765432111122222221111222 347899999999 5444210 00 123457899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcc---cccCCCCEEEEEeccCCCChhhH-------HH-HHHHHHhcC---CCCeEEE
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVG---DHKDKLPILLVLNKKDLIKPGEI-------AK-KLEWYEKFT---DVDEVIP 262 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~NK~Dl~~~~~~-------~~-~~~~~~~~~---~~~~i~~ 262 (348)
+++|+|+|+++.......++..++. ...++.|+++|+||+|+...... .. ....+.+.. ...++++
T Consensus 74 ~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 74 GALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp SEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred CEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 9999999998764344444433322 22368999999999999865331 11 112222221 2347899
Q ss_pred ecCCCCCCHHHHHHHHHHhCC
Q 018949 263 VSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+||++ .||.+.|..|.+.+.
T Consensus 154 TSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSS
T ss_pred eccCC-CcHHHHHHHHHHHHH
Confidence 99998 599999999987764
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-17 Score=153.94 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=87.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+|+|.||||||||+|+|++.+.. ++++|+||+++..+++...+.++.++||||+...... .......++..++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~-v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~--~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESE-AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD--GRGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCC-GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------CHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh--hhHHHHHHHHHHHh
Confidence 38999999999999999999998744 7899999999999999999999999999999764322 22233556677899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccc---cCCCCEEEEEeccCC
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDL 238 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl 238 (348)
||++++|+|++++..... .+...+... ....|.++++||+|.
T Consensus 150 ad~il~vvD~~~p~~~~~-~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQ-IIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHHHHH-HHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cCccccccccCccHHHHH-HHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999987543322 111111110 134566677777774
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=164.38 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=82.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|++|+|||||+|+|++..... +.+ .+++|.......+.+++..+++|||||+.+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 45689999999999999999998421110 111 2344444444556667889999999997542
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
. ..+..++..+|++|+|+|++++.......++..+.. .++|+++|+||+|+...
T Consensus 89 ~---------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 89 T---------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp C---------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred H---------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCcccc
Confidence 2 223455678999999999998887766666666655 68999999999999754
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=160.41 Aligned_cols=115 Identities=23% Similarity=0.163 Sum_probs=83.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|++|+|||||+++|++..... ..+ ..+.|.......+......+++|||||+.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~- 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD- 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG-
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc-
Confidence 44589999999999999999998432210 000 113343344445556678999999999643
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
+. ..+..++..+|++++|+|++.+.......++..+.. .++|+++|+||+|+.
T Consensus 87 -f~-------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 -FV-------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp -GH-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred -hH-------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh
Confidence 21 234455788999999999998887777777776666 689999999999987
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-16 Score=158.84 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=81.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCC-------eeEEEEe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPE-------YQMILYD 169 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~-------~~~~l~D 169 (348)
+..+|+|+|++|+|||||+++|+...... ..+ ..+.|.......+.+.+ ..+++||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 44589999999999999999997532110 111 12334433333344444 8899999
Q ss_pred CCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
|||+.+. ...+..++..+|++|+|+|++.+...+...++..+.. .++|+++|+||+|+...
T Consensus 89 TPG~~df---------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVDF---------TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccch---------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCcccc
Confidence 9996432 1234456788999999999998877666666665555 68999999999998753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=143.01 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=84.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee--cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+.++|+++|++|+|||||+++|.+..+... +..+.++. ......+.+|||||+. .+......+ +..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~--~~~~~~~~~---~~~ 78 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHV--KLRYKLSDY---LKT 78 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCCG--GGTHHHHHH---HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCcH--HHHHHHHHH---HHh
Confidence 456999999999999999999998765321 11111111 1245679999999963 333222222 222
Q ss_pred hccCccEEEEEecCC---CCCchHHHHHHHhccc----ccCCCCEEEEEeccCCCChhhHHH-------HHHHHHhcCCC
Q 018949 192 AGINADCIVVLVDAC---KAPERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAK-------KLEWYEKFTDV 257 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~---~~~~~~~~~~~~~~~~----~~~~~p~ivv~NK~Dl~~~~~~~~-------~~~~~~~~~~~ 257 (348)
....+|++|+|+|++ ........++...+.. ...+.|+++|+||+|+........ ....+....+
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~- 157 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK- 157 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-
Confidence 234589999999998 3445555555555432 125799999999999986543321 1222222212
Q ss_pred CeEEEecCCCCCC
Q 018949 258 DEVIPVSAKYGHG 270 (348)
Q Consensus 258 ~~i~~vSA~~g~g 270 (348)
.+++++||++|.+
T Consensus 158 ~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 KSLNEVERKINEE 170 (218)
T ss_dssp HHHHC--------
T ss_pred ccccccccccccc
Confidence 3678999998864
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=136.80 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=100.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|||||||++++.+..+... ..+..+.......+..++ ..+.+|||||... +..+ +..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~--~~~~-------~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER--YRAI-------TSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS--SSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEECCCCcc--hhhh-------hHHH
Confidence 45899999999999999999998776432 223233333333333343 4567799999532 2222 1233
Q ss_pred ccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..++++++|+|.+.... ....++.........+.|+++|+||+|+...... ......+....+ ..++.+||+++.
T Consensus 99 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-~~~ld~Sald~~ 177 (191)
T 1oix_A 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNG-LSFIETSALDST 177 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred hhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 578899999999876432 2222322222111256899999999998643211 112233333333 378999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++.|.+.+
T Consensus 178 ~v~~l~~~l~~~i 190 (191)
T 1oix_A 178 NVEAAFQTILTEI 190 (191)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998753
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=143.02 Aligned_cols=127 Identities=20% Similarity=0.348 Sum_probs=89.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh-
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA- 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~- 192 (348)
+..+|+++|.+|+|||||+|+|++..+..++..+++|.......+..++..+.+|||||+.+. ..+.....+.+..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~--~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG--GYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET--TEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC--ccchHHHHHHHHHHh
Confidence 456899999999999999999999887667778888877766667778889999999997543 22222222223222
Q ss_pred -ccCccEEEEEecCCC-CCchHHHHHHHhcccc-cCC--CCEEEEEeccCCCChh
Q 018949 193 -GINADCIVVLVDACK-APERIDEILEEGVGDH-KDK--LPILLVLNKKDLIKPG 242 (348)
Q Consensus 193 -~~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~-~~~--~p~ivv~NK~Dl~~~~ 242 (348)
...+|+++||+|.+. ........+...+... +.+ .|+++|+||+|+....
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 357999999987754 3444443444433321 222 6999999999997643
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.1e-17 Score=152.08 Aligned_cols=160 Identities=20% Similarity=0.193 Sum_probs=101.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe----------------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---------------------------------------- 153 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~---------------------------------------- 153 (348)
.-++|+++|.+|+|||||+|+|+|..+....... +|+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3348999999999999999999997763222111 11000
Q ss_pred ---------------EEEEEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chH
Q 018949 154 ---------------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERI 212 (348)
Q Consensus 154 ---------------~~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~ 212 (348)
...+.......+.+|||||+.... ...........+..++..+|++|+|+|++... ...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 111122334579999999986531 12344455566778899999999999876433 222
Q ss_pred HHHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHH
Q 018949 213 DEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (348)
Q Consensus 213 ~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~ 277 (348)
...+...+.. .+.|+++|+||+|+..... ............ ..+++++|++++.|+++.+..
T Consensus 192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKL-KYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCC-SSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCccccc-cCCeEEEEECChHHhccCCCH
Confidence 2334444444 5789999999999986432 112122111122 247899999999988876544
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-17 Score=157.85 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCce------------------------eeecC------CCCceEEeEEEEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKL------------------------SIVTN------KPQTTRHRILGICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~------------------------~~~~~------~~~~t~~~~~~~~~~~~~~ 164 (348)
..+|+++|++++|||||+++|++... ..+.+ ..+.|.......+..++..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 34899999999999999999974211 00111 2344544444455667789
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCc-------hHHHHHHHhcccccCCCC-EEEEEecc
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~-------~~~~~~~~~~~~~~~~~p-~ivv~NK~ 236 (348)
+.+|||||+.+ + ...+...+..+|++|+|+|++++.. .+.......+.. .++| +|+|+||+
T Consensus 123 ~~iiDtPGh~~--f-------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~ 191 (467)
T 1r5b_A 123 FSLLDAPGHKG--Y-------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKM 191 (467)
T ss_dssp EEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECT
T ss_pred EEEEECCCcHH--H-------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECc
Confidence 99999999532 2 2334556789999999999988631 223333333344 5677 99999999
Q ss_pred CCCCh----hhHHH----HHHHHHhc-C-C---CCeEEEecCCCCCCHHHHH
Q 018949 237 DLIKP----GEIAK----KLEWYEKF-T-D---VDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 237 Dl~~~----~~~~~----~~~~~~~~-~-~---~~~i~~vSA~~g~gi~eL~ 275 (348)
|+... ..... ....+... . . ..+++++||++|.|+.+++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99641 21111 22222222 1 1 3479999999999998765
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-16 Score=146.74 Aligned_cols=165 Identities=14% Similarity=0.145 Sum_probs=84.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCC--------CCceEEeEEEEEeCCC--eeEEEEeCCCCchh-----hhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK--------PQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KIH 179 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~--------~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~-----~~~ 179 (348)
..+|+++|++|+|||||+|+|++......... +..+.......+...+ ..+.+|||||+.+. .+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 34799999999999999999987654322111 1111222222222233 47899999997442 223
Q ss_pred hhHHHHHHHHHhhcc-------------CccEEEEEecC-CCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH
Q 018949 180 MLDSMMMKNVRSAGI-------------NADCIVVLVDA-CKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~-------------~ad~iv~VvD~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 245 (348)
.+...+...+..++. ++|+++|+++. ..+....+..+...+. .++|+|+|+||+|+....++.
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHHHH
Confidence 333322222112221 24578888886 4556666655555443 579999999999999877665
Q ss_pred HHHHHHHh---cCCCCeEEEecCCCCCC---HHHHHHHHHHhCC
Q 018949 246 KKLEWYEK---FTDVDEVIPVSAKYGHG---VEDIRDWILTKLP 283 (348)
Q Consensus 246 ~~~~~~~~---~~~~~~i~~vSA~~g~g---i~eL~~~i~~~l~ 283 (348)
.....+.. ..+ .+++++||++|.| +..+...|.+.++
T Consensus 194 ~~k~~i~~~~~~~~-i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 194 RLKKRILDEIEEHN-IKIYHLPDAESDEDEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHTTCC--CCSCCCC---------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHCC-CCEEeCCCcCCCcchhHHHHHHHHHhcCC
Confidence 43223322 223 4789999999987 2334455555554
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-16 Score=138.78 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=88.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|+|||||+|+|++.....++..+++|.......+..++..+.+|||||+.+. ........+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~--~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA--GYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET--TEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc--ccchHHHHHHHHHHH
Confidence 456899999999999999999999987667788888888777777888899999999997542 233333333333333
Q ss_pred --cCccEEEEEecCCCC-CchHHHHHHHhcccc-cC--CCCEEEEEeccCCCC
Q 018949 194 --INADCIVVLVDACKA-PERIDEILEEGVGDH-KD--KLPILLVLNKKDLIK 240 (348)
Q Consensus 194 --~~ad~iv~VvD~~~~-~~~~~~~~~~~~~~~-~~--~~p~ivv~NK~Dl~~ 240 (348)
..+|++++|+|.+.. .......+...+... +. ..|+++|+||+|+..
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 478999999877543 344433344433331 12 249999999999963
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-16 Score=160.62 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=114.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-----------ecCCC------CceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----------VTNKP------QTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~~~------~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
+|+|+|+.++|||||..+|+.....+ +++.. +.|.......+.++++.++|+||||+.+..
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~-- 81 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL-- 81 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH--
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH--
Confidence 79999999999999999986321110 11111 223333334466788999999999987643
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH-------
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE------- 252 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~------- 252 (348)
..+.+.++-+|++|+|||+..+.+.+.+.+++.+.. .++|.|+++||+|....+.. .....+.
T Consensus 82 -------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKmDr~~a~~~-~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 82 -------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKIDQNGIDLS-TVYQDIKEKLSAEI 151 (638)
T ss_dssp -------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEECCSSSCCSH-HHHHHHHHTTCCCC
T ss_pred -------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEeccccccCCHH-HHHHHHHHHhCCCc
Confidence 345566899999999999999999999998888887 78999999999998643210 0000000
Q ss_pred --------------------------------------------------------hcCCCCeEEEecCCCCCCHHHHHH
Q 018949 253 --------------------------------------------------------KFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 253 --------------------------------------------------------~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
......|++..||+++.|++.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 231 (638)
T 3j25_A 152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE 231 (638)
T ss_dssp CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred cccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhh
Confidence 112345888999999999999999
Q ss_pred HHHHhCCCC
Q 018949 277 WILTKLPLG 285 (348)
Q Consensus 277 ~i~~~l~~~ 285 (348)
.+.+.++..
T Consensus 232 ~i~~~~p~p 240 (638)
T 3j25_A 232 VITNKFYSS 240 (638)
T ss_dssp HHHHSCCCS
T ss_pred hhhccccCc
Confidence 999988753
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-16 Score=148.88 Aligned_cols=186 Identities=20% Similarity=0.286 Sum_probs=113.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCceEE-----------------eEEEE-------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRH-----------------RILGI------------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~-----------------~~~~~------------- 157 (348)
+...|+|+|++|+|||||+|++. +.++......+.++.. .....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 44589999999999999999997 4455444333322210 00000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC
Q 018949 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (348)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (348)
+...+.++.++||||+.+... .....+|++++|+|+..+... . .+.......|
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~------------~v~~~~d~vl~v~d~~~~~~~--~----~i~~~i~~~~ 195 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSET------------AVADLTDFFLVLMLPGAGDEL--Q----GIKKGIFELA 195 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHH------------HHHTTSSEEEEEECSCC------------CCTTHHHHC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchh------------hHHhhCCEEEEEEcCCCcccH--H----HHHHHHhccc
Confidence 123578899999999865321 113689999999998643210 0 0111001346
Q ss_pred EEEEEeccCCCChhh-HHHHHHHHHh----cC----C-CCeEEEecCCCCCCHHHHHHHHHHhCC---CCCCCCCCcccC
Q 018949 229 ILLVLNKKDLIKPGE-IAKKLEWYEK----FT----D-VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVS 295 (348)
Q Consensus 229 ~ivv~NK~Dl~~~~~-~~~~~~~~~~----~~----~-~~~i~~vSA~~g~gi~eL~~~i~~~l~---~~~~~~~~~~~~ 295 (348)
.++|+||+|+..... .......+.. .. . ..+++++||++|.|+++|++.|.+... ..++ + .+..+
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~-~-~~~r~ 273 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGE-I-AGKRR 273 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH-H-HHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcH-H-HHHHH
Confidence 688889999764322 2222222221 11 1 357899999999999999999988654 2211 1 12222
Q ss_pred CCchHHHHHHHHHHHHHhhccCCCC
Q 018949 296 EHPERFFVGEIIREKIFMQYRNEVP 320 (348)
Q Consensus 296 ~~~~~~~~~e~ire~~~~~~~~eip 320 (348)
....+++.+.+++++++.+++..+
T Consensus 274 -~~~~~~~~~~i~~~~~~~~~~~~~ 297 (337)
T 2qm8_A 274 -EQDVKWMWALVHERLHQRLVGSAE 297 (337)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 234678999999999988877543
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-16 Score=132.28 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=77.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee--cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++.+..+... +..+.++. ...+..+.+|||||... +...... .+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~--~~~~~~~---~~~~ 114 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVK--LRYKLSD---YLKT 114 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCB--SSCCHHH---HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCch--HHHHHHH---HHHh
Confidence 456999999999999999999998765321 12222221 22456799999999643 2222221 2233
Q ss_pred hccCccEEEEEecCCCCC---chHHHHHHHhccc----ccCCCCEEEEEeccCCCChhhHHHHHHH
Q 018949 192 AGINADCIVVLVDACKAP---ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 250 (348)
.+..+|++|+|+|++... .....++...+.. ...+.|+++|+||+|+............
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 346799999999998322 2222344443322 1257999999999999876544444333
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-15 Score=130.35 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=96.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC-----ceeeecCCCCceEEe--------EEEEE------------------eCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHR--------ILGIC------------------SGPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~-----~~~~~~~~~~~t~~~--------~~~~~------------------~~~~ 162 (348)
+.++|+++|.+|+|||||+++|++. +...+...++++.+. ....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 3458999999999999999999864 233333344332100 00111 1234
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
..+.+|||+|....+ .. +...++.+++|+|++.+...... .... .+.|+++|+||+|+.+..
T Consensus 109 ~d~iiidt~G~~~~~-~~-----------~~~~~~~~i~vvd~~~~~~~~~~----~~~~--~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 109 CDLLLIENVGNLICP-VD-----------FDLGENYRVVMVSVTEGDDVVEK----HPEI--FRVADLIVINKVALAEAV 170 (221)
T ss_dssp CSEEEEEEEEBSSGG-GG-----------CCCSCSEEEEEEEGGGCTTHHHH----CHHH--HHTCSEEEEECGGGHHHH
T ss_pred CCEEEEeCCCCCCCC-ch-----------hccccCcEEEEEeCCCcchhhhh----hhhh--hhcCCEEEEecccCCcch
Confidence 678999999942111 00 01256789999999876432211 1111 357899999999986431
Q ss_pred --hHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 243 --EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 243 --~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
........+.......+++++||++|.|+++++++|.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 334444444444444689999999999999999999887643
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9e-15 Score=131.69 Aligned_cols=166 Identities=20% Similarity=0.143 Sum_probs=102.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh-----CCceeeecCCCCceEE------------eEEEEE-----------------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTTRH------------RILGIC----------------- 158 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~-----~~~~~~~~~~~~~t~~------------~~~~~~----------------- 158 (348)
.+...++++|.+||||||+++.|. |.+...+...++.+.. ......
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 355689999999999999999998 7777666544432110 000000
Q ss_pred ------------e-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHH--H---HHhc
Q 018949 159 ------------S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI--L---EEGV 220 (348)
Q Consensus 159 ------------~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~--~---~~~~ 220 (348)
. ..++.+.+|||||..+.. .... .......++.. +++|+|+|++........+ . ....
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~--~~~~-l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF--LFHE-FGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH--HHSH-HHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh--hhhh-hHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 0 012479999999964321 1111 11223344567 9999999987554332211 1 1111
Q ss_pred ccccCCCCEEEEEeccCCCChhhHHHHHH----------H------------------HHhcCCCCeEEEecCCCCCCHH
Q 018949 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLE----------W------------------YEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 221 ~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~----------~------------------~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
.. .+.|+++|+||+|+....+...... . +.......+++++||++|.|++
T Consensus 168 ~~--~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 168 LR--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp HH--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred cc--cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence 12 4689999999999987543221111 1 1222233478999999999999
Q ss_pred HHHHHHHHhCCC
Q 018949 273 DIRDWILTKLPL 284 (348)
Q Consensus 273 eL~~~i~~~l~~ 284 (348)
+|+++|.+.++.
T Consensus 246 ~l~~~i~~~~~~ 257 (262)
T 1yrb_A 246 DLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999887643
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=134.45 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 178 (348)
.+|+|+|.||||||||+|+|++... .++++|++|.....+.+...+ ..+.+|||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3799999999999999999999873 467888888877666555544 4699999999865321
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCC
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~ 207 (348)
. ...+...++.+++.+|++++|+|+++
T Consensus 82 ~--~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 K--GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp H--HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c--cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 11112234456789999999999986
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=145.21 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=82.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-----e------ecCCC------CceEEeEEE--EEe-----CCCeeEEEEe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----I------VTNKP------QTTRHRILG--ICS-----GPEYQMILYD 169 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-----~------~~~~~------~~t~~~~~~--~~~-----~~~~~~~l~D 169 (348)
+..+|+|+|+.++|||||..+|+..... . +++.. +.|...... .+. .+++.++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3448999999999999999998732211 0 11111 112211111 122 2367899999
Q ss_pred CCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
|||+.+.. .++...++-+|++|+|||+..+.+.+.+.+++.+.. .++|.++++||+|...
T Consensus 92 TPGHvDF~---------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFT---------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCH---------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--HTCCEEEEEECSSSTT
T ss_pred CCCCcccH---------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEccccccC
Confidence 99987744 345566789999999999999999999998888877 7899999999999864
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=132.34 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=79.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC------CCCceEEeEEE-EEeCC--CeeEEEEeCCCCchhhh-----hhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN------KPQTTRHRILG-ICSGP--EYQMILYDTPGIIEKKI-----HML 181 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~------~~~~t~~~~~~-~~~~~--~~~~~l~DtpG~~~~~~-----~~l 181 (348)
.+|+|+|++|+|||||+|+|+|..+..... ...++...... .+... ...+.+|||||+..... ..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 379999999999999999999976531110 11122211111 11112 24689999999754211 111
Q ss_pred HHHHHHHHH-----------hhcc--CccEEEEEecCC-CCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH
Q 018949 182 DSMMMKNVR-----------SAGI--NADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (348)
Q Consensus 182 ~~~~~~~~~-----------~~~~--~ad~iv~VvD~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 247 (348)
.......+. .++. .+++|+|+++.+ .+....+..+...+. .++|+|+|+||+|+....++...
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~ 188 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQF 188 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHH
Confidence 111111111 1233 355678887776 567666644554443 47899999999999887665432
Q ss_pred HHHHH---hcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 248 LEWYE---KFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 248 ~~~~~---~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
...+. ...+ .+++.+||+++.++++++..+...+|
T Consensus 189 k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 189 KKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHT-CCCCCCC-----------------CC
T ss_pred HHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 22221 1122 36789999999999999988888765
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-14 Score=133.44 Aligned_cols=86 Identities=22% Similarity=0.295 Sum_probs=63.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC---------------------CCeeEEEEeCCCCch
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------PEYQMILYDTPGIIE 175 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~l~DtpG~~~ 175 (348)
+|+++|.||||||||+|+|++... .+.+++++|.....+.... .+..+.+|||||+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~-~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANA-LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHT-TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 699999999999999999998752 3567777777665555432 135699999999865
Q ss_pred hhh--hhhHHHHHHHHHhhccCccEEEEEecCCC
Q 018949 176 KKI--HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (348)
Q Consensus 176 ~~~--~~l~~~~~~~~~~~~~~ad~iv~VvD~~~ 207 (348)
... ..+. ..++.+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg----~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLG----NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTT----HHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHH----HHHHHHHHhCCEEEEEEECCC
Confidence 321 1232 234455789999999999975
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=126.94 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=79.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCC-------CCce-EEeEEEEEe--CCCeeEEEEeCCCCch-----hhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTT-RHRILGICS--GPEYQMILYDTPGIIE-----KKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~-------~~~t-~~~~~~~~~--~~~~~~~l~DtpG~~~-----~~~~~ 180 (348)
.+|+++|++|+|||||+++|.+......+.. ..+. ......... .....+.+|||||+.. ..+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 4799999999999999999988632221110 0111 111111121 2245789999999732 11222
Q ss_pred hHHHHHHHHHhh-------------ccCccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH
Q 018949 181 LDSMMMKNVRSA-------------GINADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (348)
Q Consensus 181 l~~~~~~~~~~~-------------~~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 246 (348)
+...+......+ ...+++++|+++.+. +.......+...+ ..+.|+++|+||.|+....++..
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~~e~~~ 175 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERER 175 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH---TTTSCEEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCHHHHHH
Confidence 222111111111 123456777777654 4655543333332 24679999999999987655432
Q ss_pred ---HHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 247 ---KLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 247 ---~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.........+ .+++++||++| |+++++..+.+.+
T Consensus 176 ~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 176 LKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHTT-CCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHh
Confidence 2222223334 47899999999 9999998887655
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-14 Score=148.19 Aligned_cols=115 Identities=22% Similarity=0.250 Sum_probs=78.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCC---------------CCceEEeEEE--EEe--------------CCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK---------------PQTTRHRILG--ICS--------------GPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~---------------~~~t~~~~~~--~~~--------------~~~ 162 (348)
+..+|+|+|++|+|||||+++|++....+.... .+.|...... .+. ..+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 345899999999999999999986532221111 1122211111 121 236
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
..+++|||||+.+. . ..+..+++.+|++|+|+|++++...+...++..... .++|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df--~-------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDF--S-------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSS--C-------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhh--H-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 78999999997542 2 224455789999999999998876666555444444 679999999999986
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.3e-13 Score=115.69 Aligned_cols=151 Identities=16% Similarity=0.174 Sum_probs=84.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc-----eeeecCCCCceEEe--------EEEEEe--------------------C
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHR--------ILGICS--------------------G 160 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~-----~~~~~~~~~~t~~~--------~~~~~~--------------------~ 160 (348)
+.++|+++|.+|||||||+++++... ...+...++++.+. ....+. .
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 34589999999999999999998642 22222222211000 000000 0
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.+..+.++|++|..... .. .-...+.++.|+|+..+...... .... .+.|.++|+||+|+.+
T Consensus 117 ~~~d~~~id~~g~i~~~-~s-----------~~~~~~~~~~v~~~~~~~~~~~~-~~~~-----~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP-AD-----------FDLGTHKRIVVISTTEGDDTIEK-HPGI-----MKTADLIVINKIDLAD 178 (226)
T ss_dssp GGCSEEEEECCSCSSGG-GG-----------CCCSCSEEEEEEEGGGCTTTTTT-CHHH-----HTTCSEEEEECGGGHH
T ss_pred CCCCEEEEeCCCCccCc-ch-----------hhhccCcEEEEEecCcchhhHhh-hhhH-----hhcCCEEEEeccccCc
Confidence 11256667777632111 00 01234556667765322211100 0111 2467899999999865
Q ss_pred hh--hHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 241 PG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 241 ~~--~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.. ...+....+.......+++++||++|.|+++++++|.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 179 AVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 32 2333334444444446899999999999999999998754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-13 Score=128.43 Aligned_cols=194 Identities=18% Similarity=0.139 Sum_probs=95.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 177 (348)
..+|+|+|.||||||||+|+|.+.+. .++++|++|..+..+.+...+ ..+.+|||||+....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 34799999999999999999999887 578889999887777665443 249999999986432
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (348)
+....+...+..+++.+|++++|+|+++... +.. ... ...| +|++|.....-.......+......
T Consensus 101 --s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~-----i~~-v~~--~~dP----~~di~~i~~El~l~d~~~~~k~~~~ 166 (396)
T 2ohf_A 101 --HNGQGLGNAFLSHISACDGIFHLTRAFEDDD-----ITH-VEG--SVDP----IRDIEIIHEELQLKDEEMIGPIIDK 166 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--------------------CTT----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --chhhHHHHHHHHHHHhcCeEEEEEecCCCcc-----hhh-hcC--CCCh----HHHHHHhhhhhhhhhHHHHHHhhhh
Confidence 2122222345677899999999999974321 111 111 1233 4555544322111111222221111
Q ss_pred CeEEEec--CCCCCCHHHHHHHHHHhCCCC-CCCC-CCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEE
Q 018949 258 DEVIPVS--AKYGHGVEDIRDWILTKLPLG-PAYY-PKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTF 330 (348)
Q Consensus 258 ~~i~~vS--A~~g~gi~eL~~~i~~~l~~~-~~~~-~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~ 330 (348)
......| ++.+.+..++++.+...++.. ++.. .. +..... .+++ +.++.....++||.+-+..+.+
T Consensus 167 ~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~----~~~~~e--~e~i-~~~~llt~KPviy~~Nv~e~~~ 236 (396)
T 2ohf_A 167 LEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYH----DWNDKE--IEVL-NKHLFLTSKPMVYLVNLSEKDY 236 (396)
T ss_dssp TCSCC--------CCHHHHHHHHHHHTTC--CCGGGCC----CCCHHH--HHHH-HHHCCGGGSCEEEEEECCHHHH
T ss_pred hhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcc----cCCHHH--HHHH-HHHHHHhCCceEEEEEecHHHh
Confidence 1122333 567788999999999998876 4321 11 111111 2344 4555667788898887765444
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-14 Score=135.48 Aligned_cols=149 Identities=22% Similarity=0.232 Sum_probs=95.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC-----ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhhHHHHHHH
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKN 188 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~~ 188 (348)
.+|+++|.+|+|||||+|+|++. ....++..+++|+......+.. .+.++||||+.... ...+.......
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 47999999999999999999986 4555788999998876654432 38999999986532 11121111111
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
. ......|.++|++++......-.......+.. .+.|+++++||+|.....+.......+.+..+. .+.+.++...
T Consensus 240 ~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~~~ 315 (369)
T 3ec1_A 240 I-TPKREIHPRVYQLNEGQTLFFGGLARLDYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGE-LLSPPSKRYA 315 (369)
T ss_dssp H-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT-TBCSSCGGGT
T ss_pred H-hcccccCceEEEEcCCceEEECCEEEEEEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCC-ccCCCCchhh
Confidence 1 11267899999999853210000000223333 578999999999998665555555556555553 4555565554
Q ss_pred CCH
Q 018949 269 HGV 271 (348)
Q Consensus 269 ~gi 271 (348)
.++
T Consensus 316 ~~~ 318 (369)
T 3ec1_A 316 AEF 318 (369)
T ss_dssp TTC
T ss_pred hhc
Confidence 444
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=118.88 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=78.0
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC------------chHHHHHHHhccc-c
Q 018949 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD-H 223 (348)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~------------~~~~~~~~~~~~~-~ 223 (348)
.+..++..+.+|||+| +..++.+ +..+++.++++|||+|.++.. .....++...+.. .
T Consensus 187 ~~~~~~~~l~iwDt~G--Qe~~r~~-------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 187 HFTFKDLHFKMFDVGG--QRSERKK-------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp EEEETTEEEEEEEECC--SGGGGGG-------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EEeeCCeeEEEEeCCC--chhhhHH-------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 3455678899999999 5444443 446689999999999998731 2223334344332 1
Q ss_pred cCCCCEEEEEeccCCCChh-----------------hHHHHHHHHH----hc-----CCCCeEEEecCCCCCCHHHHHHH
Q 018949 224 KDKLPILLVLNKKDLIKPG-----------------EIAKKLEWYE----KF-----TDVDEVIPVSAKYGHGVEDIRDW 277 (348)
Q Consensus 224 ~~~~p~ivv~NK~Dl~~~~-----------------~~~~~~~~~~----~~-----~~~~~i~~vSA~~g~gi~eL~~~ 277 (348)
..+.|+|+|+||+|+.... ...+....+. .. .....+++|||++|.||+++|++
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 2679999999999985211 1222222222 11 23347899999999999999999
Q ss_pred HHHhC
Q 018949 278 ILTKL 282 (348)
Q Consensus 278 i~~~l 282 (348)
+.+.+
T Consensus 338 v~~~i 342 (353)
T 1cip_A 338 VTDVI 342 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=117.67 Aligned_cols=190 Identities=18% Similarity=0.172 Sum_probs=112.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc----eeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~----~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
+.+.|+|+|++|+|||||+|.|.|.. ..+......+|+... +.... ...+.++|+||+... ...+...+ +.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~-~~~~~~~L-~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGST-NFPPDTYL-EK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGS-SCCHHHHH-HH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccch-HHHHHHHH-HH
Confidence 34489999999999999999999832 221111222222211 22222 235899999997532 12222222 11
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC------------ChhhHHHHHHHHH----
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGEIAKKLEWYE---- 252 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~------------~~~~~~~~~~~~~---- 252 (348)
+ .+...+..++ ++... .+.+...+...+.. .+.|+++|.||.|+. ....+.+.+..+.
T Consensus 144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1334455555 66644 35555556666555 578999999999975 1223333333332
Q ss_pred -hc-CCCCeEEEecC--CCCCCHHHHHHHHHHhCCCCCCCC-----CC-cccCCCchHHHHHHHHHHHHHh
Q 018949 253 -KF-TDVDEVIPVSA--KYGHGVEDIRDWILTKLPLGPAYY-----PK-DIVSEHPERFFVGEIIREKIFM 313 (348)
Q Consensus 253 -~~-~~~~~i~~vSA--~~g~gi~eL~~~i~~~l~~~~~~~-----~~-~~~~~~~~~~~~~e~ire~~~~ 313 (348)
.. .....++.+|+ ..+.|+++|.+.|.+.++..++.+ |. ...+....+....+.+|.+.+.
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~~a~~ 288 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFA 288 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22347899999 667789999999999999887665 32 1222334455566777776543
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.3e-14 Score=131.60 Aligned_cols=144 Identities=23% Similarity=0.223 Sum_probs=90.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc------eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhhHHHHHH
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMK 187 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~ 187 (348)
.+|+++|.+|+|||||+|+|++.. ...++..+++|+......+.. .+.++||||+.+.. ...+......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 479999999999999999999752 444688999998876654432 28999999986542 1122222211
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCC
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.. ......+.++|+++.......-.......+.. .+.|+++++||+|.....+.......+.+..+. .+.+.++.
T Consensus 238 ~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~ 312 (368)
T 3h2y_A 238 LI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD-LLSPPTPE 312 (368)
T ss_dssp HH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT-TBCSSCHH
T ss_pred Hh-ccccccCceEEEEcCCCEEEEcceEEEEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCC-ccCCCchh
Confidence 11 12467889999999843210000001223333 578999999999998777776666677666554 34454543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-11 Score=115.59 Aligned_cols=89 Identities=24% Similarity=0.242 Sum_probs=68.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 177 (348)
..+|+|+|.+|||||||+|+|++...+.++++|++|..+..+.+...+ ..+.++||||+....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 448999999999999999999998875678999999888777766554 468999999976422
Q ss_pred h--hhhHHHHHHHHHhhccCccEEEEEecCCC
Q 018949 178 I--HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (348)
Q Consensus 178 ~--~~l~~~~~~~~~~~~~~ad~iv~VvD~~~ 207 (348)
. ..+. ..+...++.+|++++|+|+..
T Consensus 100 s~~e~L~----~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLG----NAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSC----HHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHhccc
Confidence 1 1222 234455689999999999864
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=112.77 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=77.0
Q ss_pred EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCC---------CC---chHHHHHHHhccc
Q 018949 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------AP---ERIDEILEEGVGD 222 (348)
Q Consensus 155 ~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~---------~~---~~~~~~~~~~~~~ 222 (348)
...+..++..+.+|||+| +..++ ..+..+++.++++|||+|.++ .. .....++...+..
T Consensus 153 ~~~~~~~~v~l~iwDtaG--Qe~~R-------~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 153 EYDFVVKDIPFHLIDVGG--QRSER-------KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp EEEEESSSCEEEEEECCS--CHHHH-------HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred EEEEEeeeeeeccccCCC--ccccc-------ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 344566778999999999 54433 345677999999999999972 12 2222344444332
Q ss_pred c-cCCCCEEEEEeccCCCChh-----------------hHHHHHHHHHhcC-------------------------CCCe
Q 018949 223 H-KDKLPILLVLNKKDLIKPG-----------------EIAKKLEWYEKFT-------------------------DVDE 259 (348)
Q Consensus 223 ~-~~~~p~ivv~NK~Dl~~~~-----------------~~~~~~~~~~~~~-------------------------~~~~ 259 (348)
. ..+.|+++++||+|+.... ..++....+.... ....
T Consensus 224 ~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 303 (340)
T 4fid_A 224 EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVY 303 (340)
T ss_dssp GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEE
T ss_pred hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceE
Confidence 1 2679999999999985321 1112111111111 1235
Q ss_pred EEEecCCCCCCHHHHHHHHHHhC
Q 018949 260 VIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
++++||+++.|++.+|..+.+.+
T Consensus 304 ~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 304 TNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeCcHHHHHHHHHHHHHH
Confidence 68899999999999999887654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=111.38 Aligned_cols=146 Identities=14% Similarity=0.210 Sum_probs=84.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee---ecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhh-----hhh----H
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI---VTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKI-----HML----D 182 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~-----~~l----~ 182 (348)
+++|+|++|+|||||+|.|+|..+.. ....++.+...+..+....+ ..+.++|++|+..... ..+ .
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~ 123 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID 123 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH
Confidence 49999999999999999999975321 11233444443333333322 3689999999864311 111 1
Q ss_pred HHHHHHHHhh---------ccCcc---EEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHH
Q 018949 183 SMMMKNVRSA---------GINAD---CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (348)
Q Consensus 183 ~~~~~~~~~~---------~~~ad---~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 250 (348)
..+......+ ..+++ +++|++|+..+....+..+...+. .+.|+|+|+||+|.....++......
T Consensus 124 ~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l~~~ 200 (427)
T 2qag_B 124 AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTKFKIK 200 (427)
T ss_dssp HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHHHHHH
Confidence 1111111111 12333 467788888888777766666664 57899999999999988877666655
Q ss_pred HHh--cCCCCeEEEecC
Q 018949 251 YEK--FTDVDEVIPVSA 265 (348)
Q Consensus 251 ~~~--~~~~~~i~~vSA 265 (348)
+.. .....+++.+|.
T Consensus 201 I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 201 ITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHcCCcEEecCC
Confidence 554 112234555553
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.2e-11 Score=108.78 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=76.9
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCC-------C--CCc---hHHHHHHHhcccc
Q 018949 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC-------K--APE---RIDEILEEGVGDH 223 (348)
Q Consensus 156 ~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~-------~--~~~---~~~~~~~~~~~~~ 223 (348)
..+..++..+.+|||+| +..++.+ +..+++.++++|||+|.+ + ... ....++...+...
T Consensus 160 ~~~~~~~v~l~iwDtgG--Qe~~R~~-------w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 160 YPFDLQSVIFRMVDVGG--QRSERRK-------WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp EEEEETTEEEEEEEECC--SHHHHTT-------GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred EEEEeeceeeEEEEcCC--chhHHHH-------HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 34556778999999999 5444433 556789999999999765 1 122 2223344443321
Q ss_pred -cCCCCEEEEEeccCCCChh------------------hHHHHHHHH----Hh----cCCCCeEEEecCCCCCCHHHHHH
Q 018949 224 -KDKLPILLVLNKKDLIKPG------------------EIAKKLEWY----EK----FTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 224 -~~~~p~ivv~NK~Dl~~~~------------------~~~~~~~~~----~~----~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
..+.|+++++||+|+.... ..++....+ .. ......++++||+++.||+.+|.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 2679999999999985322 122222221 11 11223568899999999999999
Q ss_pred HHHHhCC
Q 018949 277 WILTKLP 283 (348)
Q Consensus 277 ~i~~~l~ 283 (348)
.+.+.+.
T Consensus 311 ~v~~~Il 317 (327)
T 3ohm_A 311 AVKDTIL 317 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-11 Score=120.03 Aligned_cols=160 Identities=21% Similarity=0.277 Sum_probs=95.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce-----------E--EeEEEE----------------E
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------R--HRILGI----------------C 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t-----------~--~~~~~~----------------~ 158 (348)
+...|+++|.+||||||++++|. |.++..++..+... + ...... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998 77766554422110 0 001110 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEeccC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKD 237 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~D 237 (348)
...++.++++||||..+... .+...+.. .... ..+|.+++|+|++.+.... . ....+.. ..|+ ++|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~-~l~~el~~-~~~~-i~pd~vllVvDa~~g~~~~-~-~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED-SLFEEMLQ-VANA-IQPDNIVYVMDASIGQACE-A-QAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH-HHHHHHHH-HHHH-HCCSEEEEEEETTCCTTHH-H-HHHHHHH---HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccch-hHHHHHHH-HHhh-hcCceEEEEEeccccccHH-H-HHHHHHh---hcCceEEEEeCCc
Confidence 11567899999999754221 12121111 1122 3789999999998765421 1 2222222 2675 89999999
Q ss_pred CCChhh-HHHHHHHHHh-------------cCCCCeEEEecCCCCCC-HHHHHHHHHHh
Q 018949 238 LIKPGE-IAKKLEWYEK-------------FTDVDEVIPVSAKYGHG-VEDIRDWILTK 281 (348)
Q Consensus 238 l~~~~~-~~~~~~~~~~-------------~~~~~~i~~vSA~~g~g-i~eL~~~i~~~ 281 (348)
...... .......+.. ...+.+.+++|+.+|.| +.+|++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 875322 1112222110 11233456689999999 99999999876
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-12 Score=124.29 Aligned_cols=191 Identities=16% Similarity=0.186 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhC------CceeeecCCCC------------------------ceEEeE----EEEEeCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQ------------------------TTRHRI----LGICSGP 161 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~------------------------~t~~~~----~~~~~~~ 161 (348)
..|+++|.+|+||||++++|.+ .++..+...+. ++.+.. ..+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999875 33333322111 222210 0111125
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCC-C-EEEEEeccCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-P-ILLVLNKKDLI 239 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~NK~Dl~ 239 (348)
++.+.++||||..... ..+...+ .. ...+..+|.+++|+|++.+... ... ...+. ... | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~-~~l~~~l-~~-i~~~~~~d~vllVvda~~g~~~-~~~-~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEE-KGLLEEM-KQ-IKEITNPDEIILVIDGTIGQQA-GIQ-AKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSH-HHHHHHH-HH-TTSSSCCSEEEEEEEGGGGGGH-HHH-HHHHH---TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCcccc-HHHHHHH-HH-HHHHhcCcceeEEeeccccHHH-HHH-HHHHh---hcccCCeEEEEeCCCCc
Confidence 6789999999975421 1111111 11 1223478999999999765422 111 22222 345 6 78999999986
Q ss_pred ChhhHHHHHHHHHhcC----------------CCCeEEEecCCCCCC-HHHHHHHHHHhCCCCCCCCCCcccCCCchHHH
Q 018949 240 KPGEIAKKLEWYEKFT----------------DVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEHPERFF 302 (348)
Q Consensus 240 ~~~~~~~~~~~~~~~~----------------~~~~i~~vSA~~g~g-i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 302 (348)
..... ......... .+.|..++|+..|.| +..|++.+.+.+ +.+. ++.+.++.
T Consensus 252 ~~~g~--~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~-------~e~~-~~~~~k~~ 321 (432)
T 2v3c_C 252 AKGGG--ALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV-------DEKT-EESIDAIM 321 (432)
T ss_dssp STTHH--HHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS-------CSSS-STTHHHHC
T ss_pred cchHH--HHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH-------Hhhh-HHHHHHHH
Confidence 43221 112111111 112334456666666 665555554433 3333 55666666
Q ss_pred HHHHHHHHHHhhccC------------CCCceEE
Q 018949 303 VGEIIREKIFMQYRN------------EVPYACQ 324 (348)
Q Consensus 303 ~~e~ire~~~~~~~~------------eip~~~~ 324 (348)
..++.++.++..+++ ++||...
T Consensus 322 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~ 355 (432)
T 2v3c_C 322 RGKFTLNELMTQLEAIENMGSMKKILSMIPGFGG 355 (432)
T ss_dssp CSCCHHHHHHHHTTTTSCC---------------
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHcccccc
Confidence 667888999998887 9999654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-10 Score=101.35 Aligned_cols=132 Identities=17% Similarity=0.294 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeec-------CCCCceEEeEEEEEe-CC--CeeEEEEeCCCCchhhh-----hh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICS-GP--EYQMILYDTPGIIEKKI-----HM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~-------~~~~~t~~~~~~~~~-~~--~~~~~l~DtpG~~~~~~-----~~ 180 (348)
.+++++|++|+|||||+|.|.|....... +.+.++.....+.+. .. ...+.++|+||+..... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 37999999999999999999875432111 111122111122211 11 23689999999854211 11
Q ss_pred hHHHHHHHH----Hh----------hccCccEEEEEecCC-CCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH
Q 018949 181 LDSMMMKNV----RS----------AGINADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (348)
Q Consensus 181 l~~~~~~~~----~~----------~~~~ad~iv~VvD~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 245 (348)
+........ .. .+..++++++++|.. .+....+..+...+.. . .++|+|+||+|.....+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~--~-~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK--V-VNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT--T-SEEEEEETTGGGSCHHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh--c-CcEEEEEeccccCCHHHHH
Confidence 222221111 11 134568899999965 6667777666666655 4 8999999999999877665
Q ss_pred HHHHH
Q 018949 246 KKLEW 250 (348)
Q Consensus 246 ~~~~~ 250 (348)
.....
T Consensus 160 ~~k~~ 164 (270)
T 3sop_A 160 EFKQR 164 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.03 E-value=8e-10 Score=101.70 Aligned_cols=132 Identities=18% Similarity=0.250 Sum_probs=82.6
Q ss_pred HHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC
Q 018949 130 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (348)
Q Consensus 130 sLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~ 209 (348)
+|+.++....+.. ..+..|..+.....+..++ .+.+||| ++.+..+.. .+++.+|++|+|+|++++.
T Consensus 32 sl~~~~~~~~f~~-~~~~pTiGd~~~~~~~~~~-~~~iwD~----qer~~~l~~-------~~~~~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRL-QNLKIYVGDRVEYTPDETG-SGVIENV----LHRKNLLTK-------PHVANVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEEEEECGGGTT-TTCCCCTTCEEEEECCCSS-SEEEEEE----CCCSCEETT-------TTEESCCEEEEEECSSTTC
T ss_pred cEEEEEEcccccc-cCCCCCCccEEEEEEcCCC-eEEEEEE----ccccceeec-------cccccCCEEEEEEeCCCCC
Confidence 5666666555430 1122222222222222333 7999999 334444433 4689999999999998764
Q ss_pred ---chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH---HHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHH
Q 018949 210 ---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 210 ---~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~ 280 (348)
.....|+ ..++. .++|+++|+||+|+.+...+ ......+... .++++|||++|.|+++++..+..
T Consensus 99 ~s~~~l~~~l-~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~---~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 99 TSTYIIDKFL-VLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGL---YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CCHHHHHHHH-HHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT---SCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCHHHHHHHH-HHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh---CcEEEEECCCCcCHHHHHHHhcC
Confidence 2223333 33344 67999999999999876543 2222222221 58999999999999999998764
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=103.21 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=74.5
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC---------C---chHHHHHHHhccc-c
Q 018949 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------P---ERIDEILEEGVGD-H 223 (348)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~---------~---~~~~~~~~~~~~~-~ 223 (348)
.+..++..+.+|||+| +..+. ..+..+++.++++|||+|.++. . .....++...+.. .
T Consensus 195 ~~~~~~~~l~i~Dt~G--q~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGG--QRSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp EEEETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EeeeCCeEEEEEeccc--hhhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 3455678999999999 43333 2345668999999999999872 1 2223344444432 1
Q ss_pred cCCCCEEEEEeccCCCCh------------------hhHHHHHHHH----Hhc-----CCCCeEEEecCCCCCCHHHHHH
Q 018949 224 KDKLPILLVLNKKDLIKP------------------GEIAKKLEWY----EKF-----TDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 224 ~~~~p~ivv~NK~Dl~~~------------------~~~~~~~~~~----~~~-----~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
..+.|+|+|+||+|+... ....+....+ ... .....+++|||+++.|++++|+
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 267999999999998521 1122222221 111 1234789999999999999999
Q ss_pred HHHHhC
Q 018949 277 WILTKL 282 (348)
Q Consensus 277 ~i~~~l 282 (348)
++.+.+
T Consensus 346 ~v~~~i 351 (362)
T 1zcb_A 346 DVKDTI 351 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-10 Score=104.53 Aligned_cols=60 Identities=30% Similarity=0.452 Sum_probs=39.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+++|.||||||||+|+|.+.+...+++.+++|+....... +..+.++||||+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWP 178 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCCCCS
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEEEEECcCcCCC
Confidence 445899999999999999999999987778899999988754333 236899999998654
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-09 Score=100.32 Aligned_cols=117 Identities=9% Similarity=0.102 Sum_probs=76.4
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCC----------CC--chHHHHHHHhccc-c
Q 018949 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK----------AP--ERIDEILEEGVGD-H 223 (348)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~----------~~--~~~~~~~~~~~~~-~ 223 (348)
.+..++..+.+|||+| +..+..+ +..+++.++++|||+|.++ .. .....++...+.. .
T Consensus 211 ~~~~~~v~l~iwDtaG--Qe~~r~~-------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGG--QRDERRK-------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp EEEETTEEEEEEEECC--SGGGGGG-------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred EeecCCccceecccch--hhhhhhh-------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 3455678999999999 5554444 4466899999999999986 21 2233344444432 1
Q ss_pred cCCCCEEEEEeccCCCChhh--------------------------------HHHHHHH----HHhc-------CCCCeE
Q 018949 224 KDKLPILLVLNKKDLIKPGE--------------------------------IAKKLEW----YEKF-------TDVDEV 260 (348)
Q Consensus 224 ~~~~p~ivv~NK~Dl~~~~~--------------------------------~~~~~~~----~~~~-------~~~~~i 260 (348)
..+.|++||+||+|+..... ....... +... .....+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 26799999999999843211 1111111 1111 112356
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (348)
++|||+++.||+++|..+.+.+
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHH
Confidence 7999999999999999987654
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.86 E-value=3e-09 Score=99.82 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCC---------CC---chHHHHHHHhcccc-cCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------AP---ERIDEILEEGVGDH-KDKL 227 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~---------~~---~~~~~~~~~~~~~~-~~~~ 227 (348)
+...+.+|||+| +..+..+ +..+++.++++|+|+|.+. .. .....++....... ..+.
T Consensus 181 ~~v~l~iwDtaG--Qe~~r~~-------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 181 SGEVYRLFDVGG--QRNERRK-------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp ---EEEEEEECC--STTGGGG-------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred cceeeEEEECCC--chhhhHH-------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 457899999999 5555544 4466899999999999871 22 22233443343321 2679
Q ss_pred CEEEEEeccCCCChh-----------------------hHHHHHHHHHh----c----------CCCCeEEEecCCCCCC
Q 018949 228 PILLVLNKKDLIKPG-----------------------EIAKKLEWYEK----F----------TDVDEVIPVSAKYGHG 270 (348)
Q Consensus 228 p~ivv~NK~Dl~~~~-----------------------~~~~~~~~~~~----~----------~~~~~i~~vSA~~g~g 270 (348)
|+++|+||+|+.... ..++....+.. . .....+++|||+++.|
T Consensus 252 piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~n 331 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKL 331 (354)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHH
T ss_pred eEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchh
Confidence 999999999984211 11111111111 0 1223468999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
|+++|+++.+.+
T Consensus 332 V~~vF~~v~~~I 343 (354)
T 2xtz_A 332 VKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-08 Score=86.12 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=67.5
Q ss_pred HHHHHHhhccCccEEEEEecCCCCC-chHHHHH---HHhcccc--cCCCCEEEEEecc-CCCChhhHHHHHHHHH--hcC
Q 018949 185 MMKNVRSAGINADCIVVLVDACKAP-ERIDEIL---EEGVGDH--KDKLPILLVLNKK-DLIKPGEIAKKLEWYE--KFT 255 (348)
Q Consensus 185 ~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~---~~~~~~~--~~~~p~ivv~NK~-Dl~~~~~~~~~~~~~~--~~~ 255 (348)
+...+..|+..+|++|||||+++.. ......+ ...+... ..+.|++|++||. |++..-...+....+. ...
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~ 194 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN 194 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCC
Confidence 3345667889999999999998653 1233333 3334332 2578999999995 7765433333333222 123
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
..+.+.+|||.+|+|+.+-++||.+.+..
T Consensus 195 R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 195 HPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 55689999999999999999999987754
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.8e-08 Score=93.87 Aligned_cols=148 Identities=18% Similarity=0.233 Sum_probs=82.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce-----------EEeEEEE------------------E
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------RHRILGI------------------C 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t-----------~~~~~~~------------------~ 158 (348)
++..|+++|.+|+||||++..|. |.++..+...+... ....... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999986 55554433222100 0000000 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
...++.+.++||||..+.....+ ..+ ... .....+|.+++|+|++.+... .... ..+.. .-.+..+|+||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm-~el-~~i-~~~~~pd~vlLVvDA~~gq~a-~~~a-~~f~~--~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALI-EEM-KQI-SNVIHPHEVILVIDGTIGQQA-YNQA-LAFKE--ATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHH-HHH-HHH-HHHHCCSEEEEEEEGGGGGGH-HHHH-HHHHH--SCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHH-HHH-HHH-HHhhcCceEEEEEeCCCchhH-HHHH-HHHHh--hCCCeEEEEECCCC
Confidence 11347899999999654322211 111 112 223468999999999875432 2222 22222 22455799999998
Q ss_pred CChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
...... ...... ..+ .|+.+++. |+++++|
T Consensus 252 ~~~gG~--~ls~~~-~~g-~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 252 SAKGGG--ALSAVA-ATG-APIKFIGT--GEKIDDI 281 (443)
T ss_dssp CSSHHH--HHHHHH-TTC-CCEEEEEC--SSSTTCE
T ss_pred cccccH--HHHHHH-HHC-CCEEEEEc--CCChHHh
Confidence 754321 122222 233 37777774 7777664
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=9.4e-09 Score=102.30 Aligned_cols=61 Identities=30% Similarity=0.385 Sum_probs=43.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE-------eCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-------SGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|.||+|||||+|+|+|..... ..+++|+....+++ ...+..+.++||||+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 44589999999999999999999987532 34444433322222 235678999999998653
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.66 E-value=7.3e-08 Score=87.69 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=69.8
Q ss_pred EeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH
Q 018949 168 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (348)
Q Consensus 168 ~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 247 (348)
-..||+... ..+.+...+..+|+|++|+|+..+.......+..++ .++|.++|+||+|+.+....+..
T Consensus 4 ~w~PGhm~k--------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~ 71 (282)
T 1puj_A 4 QWFPGHMAK--------ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQW 71 (282)
T ss_dssp -----CTTH--------HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHH
T ss_pred cCCchHHHH--------HHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHH
Confidence 356885332 234566778999999999999887654433444444 46899999999999986554444
Q ss_pred HHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 248 ~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
...+.. .+. +++++||+++.|+++|++.+.+.+
T Consensus 72 ~~~~~~-~g~-~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 72 KEHFEN-QGI-RSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHHHHT-TTC-CEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHHh-cCC-cEEEEECCCcccHHHHHHHHHHHH
Confidence 444433 233 789999999999999999887655
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-08 Score=87.75 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=61.0
Q ss_pred hhccCccEEEEEecCCCCC-ch--HHHHHHHhcccccCCCCEEEEEeccCCCChhh---HHHHHHHHHhcCCCCeEEEec
Q 018949 191 SAGINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~-~~--~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vS 264 (348)
.++.++|++++|+|++++. .. .+.++ ..+.. .++|+++|+||+|+.+... ..+....+.. .+ .+++++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l-~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~-~g-~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNML-VVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRD-AG-YDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHH-HHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-TT-CEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHH-HHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-CC-CeEEEEE
Confidence 3589999999999998764 22 23333 33444 6799999999999987642 2333333333 33 3899999
Q ss_pred CCCCCCHHHHHHHHHH
Q 018949 265 AKYGHGVEDIRDWILT 280 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~ 280 (348)
|++|.|+++|+..+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999988754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-08 Score=91.36 Aligned_cols=58 Identities=36% Similarity=0.499 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
.+|+++|.+|+|||||+|+|.+.....+.+.+++|+....... +..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCcccC
Confidence 3899999999999999999999887667888888887543222 246899999998653
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=88.17 Aligned_cols=91 Identities=23% Similarity=0.238 Sum_probs=60.5
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh----hHHHHHHHHHhcCCC--CeEE
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVI 261 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i~ 261 (348)
....+.+.+|++++|+|+++........+.+. ..++|+++|+||+|+.+.. ...+.........+. .+++
T Consensus 62 ~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~----~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~ 137 (368)
T 3h2y_A 62 ILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF----VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVF 137 (368)
T ss_dssp HHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH----SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHhccCcEEEEEEECCCCcccHHHHHHHH----hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEE
Confidence 34445668889999999986432111112222 2478999999999997543 233333332333333 3789
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+||++|.|+++|++.+.+..
T Consensus 138 ~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 138 LISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHhhhhhhc
Confidence 999999999999999998754
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.8e-07 Score=83.08 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=66.4
Q ss_pred HHHHhhccCccEEEEEecCCCCCc-hHHHHHH---Hhcccc--cCCCCEEEEEec-cCCCChhhHHHHHHHHH--hcCCC
Q 018949 187 KNVRSAGINADCIVVLVDACKAPE-RIDEILE---EGVGDH--KDKLPILLVLNK-KDLIKPGEIAKKLEWYE--KFTDV 257 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~-~~~~~~~---~~~~~~--~~~~p~ivv~NK-~Dl~~~~~~~~~~~~~~--~~~~~ 257 (348)
..+..|+..+|++|||||+++... .....+. ..+... ..+.|++|++|| .|++..-...+..+.+. .....
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~ 281 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHP 281 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSC
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCc
Confidence 346677899999999999987542 1222221 233221 267999999997 58875433333333322 12345
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+.+.+|||.+|+|+.+-++||.+.+..
T Consensus 282 W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 282 WLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 689999999999999999999998854
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-07 Score=86.60 Aligned_cols=91 Identities=23% Similarity=0.199 Sum_probs=62.9
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh----hHHHHHHHHHhcCCC--CeEEE
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVIP 262 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i~~ 262 (348)
...+...++++++|+|+++........+...+ .++|+++|+||+|+.+.. ...+.........+. .+++.
T Consensus 65 L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 140 (369)
T 3ec1_A 65 LHRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCL 140 (369)
T ss_dssp HHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred HHHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 33445788999999999876643333333332 468999999999997642 223333332333343 47899
Q ss_pred ecCCCCCCHHHHHHHHHHhCC
Q 018949 263 VSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+||++|.|+++|++.+.+...
T Consensus 141 iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 141 VSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp CBTTTTBTHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHhhcc
Confidence 999999999999999987653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.8e-07 Score=87.56 Aligned_cols=145 Identities=19% Similarity=0.231 Sum_probs=78.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCC----------------CceEEeEE-----------E--EEe
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP----------------QTTRHRIL-----------G--ICS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~----------------~~t~~~~~-----------~--~~~ 159 (348)
+..|+++|.+|+||||++..|. |.++..+...+ +....... . ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4579999999999999999986 44443322111 11000000 0 011
Q ss_pred CCCeeEEEEeCCCCch--hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~--~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
..++.+.++||||..+ .....+ ..+ ....... .+|.+++|+|++.+... .. ....+.. .-.+..+|+||+|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm-~el-~~i~~~~-~pd~vlLVlDa~~gq~a-~~-~a~~f~~--~~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLL-EEM-KEMYDVL-KPDDVILVIDASIGQKA-YD-LASRFHQ--ASPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHH-HHH-HHHHHHH-CCSEEEEEEEGGGGGGG-HH-HHHHHHH--HCSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHH-HHH-HHHHHhh-CCcceEEEEeCccchHH-HH-HHHHHhc--ccCCcEEEEeccc
Confidence 2357899999999643 222211 111 1122222 56899999999875432 22 2222222 2245789999999
Q ss_pred CCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
....... ....... .+ .|+.+++. |++++
T Consensus 250 ~~a~~G~--als~~~~-~g-~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 250 GTAKGGG--ALSAVVA-TG-ATIKFIGT--GEKID 278 (433)
T ss_dssp GCSCHHH--HHHHHHH-HT-CEEEEEEC--CSSSS
T ss_pred ccccchH--HHHHHHH-HC-CCEEEEEC--CCChH
Confidence 8643221 1222222 22 37777775 66653
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-06 Score=87.61 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=43.4
Q ss_pred eeEEEEeCCCCchhhhhh----hHHHHHHHHHhhccC-ccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEecc
Q 018949 163 YQMILYDTPGIIEKKIHM----LDSMMMKNVRSAGIN-ADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKK 236 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~----l~~~~~~~~~~~~~~-ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~ 236 (348)
..+.++|.||+....... ........+..++.. ..++++++++.... ......+...+.. .+.+.|+|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~--~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP--EGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS--SCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh--cCCceEEEecch
Confidence 458999999976533222 223344445554544 35666666655433 2222334444444 568999999999
Q ss_pred CCCChh
Q 018949 237 DLIKPG 242 (348)
Q Consensus 237 Dl~~~~ 242 (348)
|+....
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998543
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.1e-07 Score=82.56 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=61.5
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.+...+..+|++++|+|+..+.......+. ++ ++|.++|+||+|+.+..........+... +. ++ .+||++
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~-g~-~v-~iSa~~ 84 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQ-GK-RV-ITTHKG 84 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHT-TC-CE-EECCTT
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHc-CC-eE-EEECCC
Confidence 445567999999999999876643221111 11 68999999999999865555545555442 33 57 999999
Q ss_pred CCCHHHHHHHHHHh
Q 018949 268 GHGVEDIRDWILTK 281 (348)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (348)
|.|+++|++.+...
T Consensus 85 ~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 85 EPRKVLLKKLSFDR 98 (262)
T ss_dssp SCHHHHHHHHCCCT
T ss_pred CcCHHHHHHHHHHh
Confidence 99999999887654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.31 E-value=3e-06 Score=77.54 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=79.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce--------------EEeEEE-------------E--Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILG-------------I--CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t--------------~~~~~~-------------~--~~ 159 (348)
...|+++|.+|+||||++..+. |.+...+...+... ...... . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4479999999999999999886 44444332221100 000000 0 01
Q ss_pred CCCeeEEEEeCCCCch--hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEecc
Q 018949 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~--~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~ 236 (348)
..++.+.++||||..+ .... +-..+ ... .....+|.+++|+|+..+. ...... ..+. ...| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~-l~~el-~~i-~~~~~~d~vllVvda~~g~-~~~~~~-~~~~---~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAA-LLEEM-KNI-YEAIKPDEVTLVIDASIGQ-KAYDLA-SKFN---QASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHH-HHHHH-HHH-HHHHCCSEEEEEEEGGGGG-GHHHHH-HHHH---HTCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHH-HHHHH-HHH-HHHhcCCEEEEEeeCCchH-HHHHHH-HHHH---hhCCCCEEEEeCC
Confidence 1567899999999654 2111 11111 111 1234789999999997542 222222 2222 2356 67899999
Q ss_pred CCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
|...... .... +....+ .|+..++ +|+++++|
T Consensus 250 D~~~~~g--~~~~-~~~~~~-~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 250 DGTAKGG--GALS-AVAATG-ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGCTTHH--HHHH-HHHTTT-CCEEEEE--CSSSTTCE
T ss_pred CCCcchH--HHHH-HHHHHC-cCEEEEe--CCCChhhc
Confidence 9764322 1222 223333 3677765 67776553
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.8e-06 Score=79.57 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=43.3
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCC---------------ceeeecCCCCceEEeEEEEEeC-----------CCeeE
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ---------------KLSIVTNKPQTTRHRILGICSG-----------PEYQM 165 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~-----------~~~~~ 165 (348)
+.+...|+|+|.+++|||||+|.|+|. +....+.. ++|+....+++.+ ....+
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~~~~~~~~~~v 142 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAV 142 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEEECSSSCEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCccccccCCCCcceE
Confidence 345668999999999999999999864 22222222 2444444444432 24679
Q ss_pred EEEeCCCCchh
Q 018949 166 ILYDTPGIIEK 176 (348)
Q Consensus 166 ~l~DtpG~~~~ 176 (348)
.++||||+.+.
T Consensus 143 vllDTeG~~~~ 153 (447)
T 3q5d_A 143 LLMDTQGTFDS 153 (447)
T ss_dssp EEEEEECCCSS
T ss_pred EEEcCCccccc
Confidence 99999998653
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-05 Score=75.33 Aligned_cols=118 Identities=22% Similarity=0.212 Sum_probs=67.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHh-------CCceeeecCCCCceE--------------EeEEE---------------EE
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTTR--------------HRILG---------------IC 158 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~-------~~~~~~~~~~~~~t~--------------~~~~~---------------~~ 158 (348)
...|+++|.+|+||||++..|. |.++..+...+.... ..... ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4479999999999999999986 666554433321110 00000 00
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~D 237 (348)
...++.++++||||..+.... +...+ ..+ .....+|.+++|+|+..+. ........+ . ...+ .-+|+||+|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~-l~~~L-~~~-~~~~~p~~vllVvda~~g~-~~~~~~~~f-~---~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEA-MMDEI-KQV-HASINPVETLFVVDAMTGQ-DAANTAKAF-N---EALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHH-HHHHH-HHH-HHHSCCSEEEEEEETTBCT-THHHHHHHH-H---HHSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHH-HHHHH-HHH-HHhhcCcceeEEeecchhH-HHHHHHHHH-h---ccCCCeEEEEecCC
Confidence 124678999999996442211 11111 111 2245789999999998653 222222222 1 2244 347999999
Q ss_pred CCC
Q 018949 238 LIK 240 (348)
Q Consensus 238 l~~ 240 (348)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=73.61 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=57.7
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhccc-ccCCCCEEEEEeccCCCChhh----HHHHHHHHHhcCCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE----IAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.+.++|.+++|+|+..+..... .+.+++.. ...++|.++|+||+|+.+... +......+... +. +++.+||.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-g~-~v~~~sa~ 159 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-GY-DVYLTSSK 159 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-TC-CEEECCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-CC-eEEEEecC
Confidence 4789999999999987664433 33333321 116789999999999987644 34444444433 33 78999999
Q ss_pred CCCCHHHHHHH
Q 018949 267 YGHGVEDIRDW 277 (348)
Q Consensus 267 ~g~gi~eL~~~ 277 (348)
+|.|+++|+..
T Consensus 160 ~~~g~~~L~~~ 170 (307)
T 1t9h_A 160 DQDSLADIIPH 170 (307)
T ss_dssp HHTTCTTTGGG
T ss_pred CCCCHHHHHhh
Confidence 99998877654
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.75 E-value=6.8e-05 Score=69.41 Aligned_cols=147 Identities=21% Similarity=0.220 Sum_probs=75.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC------ceeeecCCCCc-e----------EEeEEEEE------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT-T----------RHRILGIC------------------ 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~------~~~~~~~~~~~-t----------~~~~~~~~------------------ 158 (348)
+...|+++|++|+||||+++.|.+. ++......... . +.....+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 3448999999999999999998742 22221111000 0 00000000
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
...+..+.++||+|..+.....+... .. .... -.+|-.++++|+..+. ........+.+. .+ .-++++||.|.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL-~~-i~ra-l~~de~llvLDa~t~~-~~~~~~~~~~~~--~~-it~iilTKlD~ 280 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEM-KK-IARV-TKPNLVIFVGDALAGN-AIVEQARQFNEA--VK-IDGIILTKLDA 280 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHH-HH-HHHH-HCCSEEEEEEEGGGTT-HHHHHHHHHHHH--SC-CCEEEEECGGG
T ss_pred HhccchhhHHhhccchhHHHHHHHHH-HH-HHHH-hcCCCCEEEEecHHHH-HHHHHHHHHHHh--cC-CCEEEEeCcCC
Confidence 01234578899999754332222221 11 1111 2478899999987663 222222222222 12 33788999997
Q ss_pred CChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
...-- ......... + .|+..++ +|+++++
T Consensus 281 ~a~~G--~~l~~~~~~-~-~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 281 DARGG--AALSISYVI-D-APILFVG--VGQGYDD 309 (328)
T ss_dssp CSCCH--HHHHHHHHH-T-CCEEEEE--CSSSTTC
T ss_pred ccchh--HHHHHHHHH-C-CCEEEEe--CCCCccc
Confidence 43211 112222222 2 3677776 7776654
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0003 Score=68.26 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=63.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCce-----------EEeEEEEE------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-----------RHRILGIC------------------ 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~t-----------~~~~~~~~------------------ 158 (348)
+...|+|+|.+|+|||||++.|.+ .++.......... +..+..+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 344799999999999999999864 2232221111100 00000110
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHH--HHHHHHhhc-cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEec
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSM--MMKNVRSAG-INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~--~~~~~~~~~-~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 235 (348)
...++.+.++||+|..+.....+... ....+.... ...+-+++|+|++.+.... .....+... .++. .+|+||
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al-~~ak~f~~~--~~it-gvIlTK 447 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-SQAKLFHEA--VGLT-GITLTK 447 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-HHHHHHHHH--TCCS-EEEEEC
T ss_pred HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH-HHHHHHHhh--cCCC-EEEEEc
Confidence 01345789999999754332222211 111111111 2356789999988663222 222222222 2333 578999
Q ss_pred cCCC
Q 018949 236 KDLI 239 (348)
Q Consensus 236 ~Dl~ 239 (348)
.|-.
T Consensus 448 LD~t 451 (503)
T 2yhs_A 448 LDGT 451 (503)
T ss_dssp GGGC
T ss_pred CCCc
Confidence 9964
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00036 Score=63.82 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=63.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCc-e----------EEeEEEEEe------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT-T----------RHRILGICS------------------ 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~-t----------~~~~~~~~~------------------ 159 (348)
...|+++|++|+|||||++.+.+ .++......... . +.....+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999863 222221111000 0 000000100
Q ss_pred CCCeeEEEEeCCCCchhhhhh---hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEecc
Q 018949 160 GPEYQMILYDTPGIIEKKIHM---LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~---l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~ 236 (348)
..+..+.++||+|..+..... +...-....+.....++.+++++|++.+... ...+....+. .+. .++++||.
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~-~~~~~~~~~~--~~~-t~iivTh~ 257 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG-LEQAKKFHEA--VGL-TGVIVTKL 257 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH-HHHHHHHHHH--HCC-SEEEEECT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH-HHHHHHHHHH--cCC-cEEEEECC
Confidence 113457899999975432222 2211111122234567888999998766432 2333333222 123 47889999
Q ss_pred CCC
Q 018949 237 DLI 239 (348)
Q Consensus 237 Dl~ 239 (348)
|..
T Consensus 258 d~~ 260 (304)
T 1rj9_A 258 DGT 260 (304)
T ss_dssp TSS
T ss_pred ccc
Confidence 865
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00086 Score=61.76 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCc--------e------EEeEEEEE----------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT--------T------RHRILGIC---------------- 158 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~--------t------~~~~~~~~---------------- 158 (348)
...|+++|.+|+||||++..|. +.++..+...+.. + +... .++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l-~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKV-DLVKANKLNADPASVVFDA 183 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTE-EEECCSSTTCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCc-eEEeCCCCCCCHHHHHHHH
Confidence 3479999999999999999875 2333322111100 0 0001 111
Q ss_pred ----eCCCeeEEEEeCCCCchhhhhhhHHHH-HHHHHh-h-ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EE
Q 018949 159 ----SGPEYQMILYDTPGIIEKKIHMLDSMM-MKNVRS-A-GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-IL 230 (348)
Q Consensus 159 ----~~~~~~~~l~DtpG~~~~~~~~l~~~~-~~~~~~-~-~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~i 230 (348)
...++.++++||||..+.....+.... ...+.. . -..+|.+++|+|+..+ ........... ...+ .=
T Consensus 184 l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-~~~l~~~~~~~----~~~~i~G 258 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-QNGVIQAEEFS----KVADVSG 258 (320)
T ss_dssp HHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-HHHHHHHHHHT----TTSCCCE
T ss_pred HHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-HHHHHHHHHHh----hcCCCcE
Confidence 023568999999996543211111110 001111 1 1347899999999854 22222222221 2233 34
Q ss_pred EEEeccCCCC
Q 018949 231 LVLNKKDLIK 240 (348)
Q Consensus 231 vv~NK~Dl~~ 240 (348)
+|+||.|...
T Consensus 259 vVltk~d~~~ 268 (320)
T 1zu4_A 259 IILTKMDSTS 268 (320)
T ss_dssp EEEECGGGCS
T ss_pred EEEeCCCCCC
Confidence 7899999754
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=8.3e-05 Score=67.84 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=62.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHh-------CCceeeecCCCCc-eEE------------eE-E---------EEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQT-TRH------------RI-L---------GICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~-------~~~~~~~~~~~~~-t~~------------~~-~---------~~~~~~~~~ 164 (348)
...|+++|++|+||||++..|. |.++..+...+.. +.. .. . .+....+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 4489999999999999999875 2233322221110 000 00 0 000113567
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhcc--CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~--~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+.++||||........+ ......+. .++.+++|+|++........ +...+.. .+ ..-+|+||.|...
T Consensus 185 lvIiDT~G~~~~~~~~~-----~el~~~l~~~~~~~~~lVl~at~~~~~~~~-~~~~~~~--l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYI-----DELKETIPFESSIQSFLVLSATAKYEDMKH-IVKRFSS--VP-VNQYIFTKIDETT 253 (296)
T ss_dssp EEEEECCCCCTTSHHHH-----HHHHHHSCCCTTEEEEEEEETTBCHHHHHH-HTTTTSS--SC-CCEEEEECTTTCS
T ss_pred EEEEeCCCCChhhHHHH-----HHHHHHHhhcCCCeEEEEEECCCCHHHHHH-HHHHHhc--CC-CCEEEEeCCCccc
Confidence 99999999753221111 22222232 46788999998765333222 2222221 12 2346779999764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00036 Score=65.14 Aligned_cols=80 Identities=23% Similarity=0.372 Sum_probs=52.9
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhc---ccccCCCCEEEEEeccCCCChhh---HHHHHHHHHhcCCCCeEEEecCC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~---~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
..++|.+++| |+..+.... ..+.+++ .. .++|.++|+||+|+.+... +......+.. .+. +++.+||.
T Consensus 128 ~anvD~v~iv-~a~~P~~~~-~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-~G~-~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSL-NIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-IGY-RVLMVSSH 201 (358)
T ss_dssp EECCCEEEEE-EESTTTCCH-HHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-TTC-CEEECBTT
T ss_pred HhcCCEEEEE-EeCCCCCCH-HHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHh-CCC-cEEEEecC
Confidence 5789999976 444444222 2233332 22 5688899999999987654 3333444433 333 68999999
Q ss_pred CCCCHHHHHHHH
Q 018949 267 YGHGVEDIRDWI 278 (348)
Q Consensus 267 ~g~gi~eL~~~i 278 (348)
++.|+++|...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999988765
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.35 E-value=5e-05 Score=69.56 Aligned_cols=55 Identities=29% Similarity=0.315 Sum_probs=31.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCC-------CceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
.++|+|++|||||||+|+|.+.......... ++|..... .... .-.++||||+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSS 236 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCSS
T ss_pred EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccc
Confidence 7999999999999999999986533222111 23332211 1111 247899999753
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00038 Score=59.17 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=66.2
Q ss_pred EEEEE-cCCCCChHHHHHHHh------CCceeeecCCCCceEEe-------EEEEEe-------------CCCeeEEEEe
Q 018949 117 YVAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR-------ILGICS-------------GPEYQMILYD 169 (348)
Q Consensus 117 ~v~i~-G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~-------~~~~~~-------------~~~~~~~l~D 169 (348)
.|+|. +..|+||||+.-.|. |.+...+...+..+... ...++. ...+.+.++|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 46777 578999999987653 44444332222111000 000111 1347899999
Q ss_pred CCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccc---cCCCCEEEEEeccCCCC
Q 018949 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDLIK 240 (348)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~ 240 (348)
||+.... .....+..+|.+++++..+... .....+.+.++.. ..+.++.+|+|++|...
T Consensus 83 ~~~~~~~-----------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 83 GAGSLSV-----------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp CCSSSSH-----------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCCCCH-----------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 9985321 1223356799999999987655 5445555555432 23567899999999643
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0012 Score=63.04 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce--------------EEeEEE------------E---Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILG------------I---CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t--------------~~~~~~------------~---~~ 159 (348)
...|+++|.+|+||||++..|. +.++..+...+... ...... . ..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~ 177 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999875 22332221111100 000000 0 01
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCC
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDL 238 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl 238 (348)
..++.+.++||||..+.....+.. + ... .....+|.+++|+|+..+. .......... ...+ .-+|+||.|.
T Consensus 178 ~~~~DvVIIDTaG~l~~d~~l~~e-l-~~i-~~~~~pd~vlLVvDa~tgq-~av~~a~~f~----~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 178 LEARDLILVDTAGRLQIDEPLMGE-L-ARL-KEVLGPDEVLLVLDAMTGQ-EALSVARAFD----EKVGVTGLVLTKLDG 249 (425)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHH-H-HHH-HHHHCCSEEEEEEEGGGTT-HHHHHHHHHH----HHTCCCEEEEESGGG
T ss_pred HCCCCEEEEcCCCcccccHHHHHH-H-HHh-hhccCCceEEEEEeccchH-HHHHHHHHHH----hcCCceEEEEeCcCC
Confidence 145679999999964322111111 1 111 1123688999999997652 2222222221 1233 4678999997
Q ss_pred CC
Q 018949 239 IK 240 (348)
Q Consensus 239 ~~ 240 (348)
..
T Consensus 250 ~~ 251 (425)
T 2ffh_A 250 DA 251 (425)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0017 Score=59.37 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~ 136 (348)
...|+++|++|+||||++..|.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3479999999999999999875
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0026 Score=58.36 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.+.++|+|+.|+|||||+|.+++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 347999999999999999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=66.01 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~ 140 (348)
.++|+|++|||||||+|.|.|...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 799999999999999999998654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00086 Score=61.21 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||+|+|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 79999999999999999998 43
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0045 Score=56.42 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...++++|++|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0007 Score=61.76 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~ 140 (348)
.++++|++|+|||||+|+|.|...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 799999999999999999998653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00023 Score=60.80 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCce-eeecCCCCceEEeE
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRI 154 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~~t~~~~ 154 (348)
..+...|+|+|++|+|||||+++|.+... ......+.||+...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~ 59 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR 59 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCc
Confidence 34555799999999999999999986432 12334455555443
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.011 Score=55.08 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCc--------e---EEeEEEEEe------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT--------T---RHRILGICS------------------ 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~--------t---~~~~~~~~~------------------ 159 (348)
.-.|+++|++|+|||||++.|.+ .++......... + +..+..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 34799999999999999999864 222221111100 0 000001110
Q ss_pred -CCCeeEEEEeCCCCchhhhh---hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEec
Q 018949 160 -GPEYQMILYDTPGIIEKKIH---MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (348)
Q Consensus 160 -~~~~~~~l~DtpG~~~~~~~---~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 235 (348)
..+....++||.|+.+.... .+...-....+......+-+++|+|++.+..... ....+... .+. -++++||
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~-~~~~~~~~--~g~-t~iiiTh 312 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP-QAREFNEV--VGI-TGLILTK 312 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH-HHHHHHHH--TCC-CEEEEES
T ss_pred HhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH-HHHHHHHh--cCC-eEEEEec
Confidence 01234688999998543222 2221111112223456787889999766554332 22222222 233 3678899
Q ss_pred cCCCC
Q 018949 236 KDLIK 240 (348)
Q Consensus 236 ~Dl~~ 240 (348)
.|-..
T Consensus 313 lD~~~ 317 (359)
T 2og2_A 313 LDGSA 317 (359)
T ss_dssp CTTCS
T ss_pred Ccccc
Confidence 88653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0074 Score=54.74 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=60.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCce-----------EEeEEEE------------------Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-----------RHRILGI------------------CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~t-----------~~~~~~~------------------~~ 159 (348)
...++++|.+|+||||++..+.+ .++..+...+... ....... ..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999998753 2222211111000 0000000 00
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCC
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDL 238 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl 238 (348)
..++.+.++||||........+.. +. ..... -.+|.+++|+|+... ........... ...+ .-+|+||+|.
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~-l~-~~~~~-~~~~~~~lv~~~~~~-~~~~~~~~~~~----~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGE-LA-RLKEV-LGPDEVLLVLDAMTG-QEALSVARAFD----EKVGVTGLVLTKLDG 249 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHH-HH-HHHHH-HCCSEEEEEEEGGGT-HHHHHHHHHHH----HHTCCCEEEEECGGG
T ss_pred hCCCCEEEEeCCCCccccHHHHHH-HH-HHhhh-cCCCEEEEEEeCCCc-HHHHHHHHHHh----hcCCCCEEEEECCCC
Confidence 134679999999854322111211 11 11111 257888999998753 22222222111 1233 4578999997
Q ss_pred CC
Q 018949 239 IK 240 (348)
Q Consensus 239 ~~ 240 (348)
..
T Consensus 250 ~~ 251 (295)
T 1ls1_A 250 DA 251 (295)
T ss_dssp CS
T ss_pred Cc
Confidence 54
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0043 Score=53.17 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=62.6
Q ss_pred EEEEE-cCCCCChHHHHHHHh------CCceeeecCCCCceEEeE-------EEEEe-------CCCeeEEEEeCCCC-c
Q 018949 117 YVAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRI-------LGICS-------GPEYQMILYDTPGI-I 174 (348)
Q Consensus 117 ~v~i~-G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~~-------~~~~~-------~~~~~~~l~DtpG~-~ 174 (348)
.|+|+ +..|+||||+.-.|. | +...+...+..+.... ..++. ...+.+.++|||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 46665 578999999987763 4 4443322221110000 00110 13467999999984 3
Q ss_pred hhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
... ....+..+|.+|+++..+.........+.+.++.. .+.++.+|+|++|...
T Consensus 81 ~~~-----------~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 81 DED-----------LEALADGCDLLVIPSTPDALALDALMLTIETLQKL-GNNRFRILLTIIPPYP 134 (209)
T ss_dssp SSH-----------HHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHT-CSSSEEEEECSBCCTT
T ss_pred cHH-----------HHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhc-cCCCEEEEEEecCCcc
Confidence 211 22335689999999987643322222333333332 2567889999999764
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00018 Score=69.95 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=54.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE----EEeCCCeeEEEEeCCCCchhhhhhhHHH---HHH
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG----ICSGPEYQMILYDTPGIIEKKIHMLDSM---MMK 187 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~l~DtpG~~~~~~~~l~~~---~~~ 187 (348)
...|+++|.+|+||||+.++|...-.. ... .|...... ..........+||+.| +..+...... ...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~---~~~-~t~~~~~d~~r~~~~g~~~~~~ifd~~g--~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF---IGV-PTREFNVGQYRRDMVKTYKSFEFFLPDN--EEGLKIRKQCALAALN 112 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH---TTC-CEEEEEHHHHHHHHHCSCCCGGGGCTTC--HHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc---cCC-CceEEecchhhhhhccCCCcccccCCCC--HHHHHHHHHHHHHHHH
Confidence 347999999999999999998653211 000 11111000 0001112235677777 3222111111 122
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhccc
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGD 222 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~ 222 (348)
....++..+.+.++|+|+++........+...++.
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 33455666778899999988765555555555544
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0095 Score=57.08 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=19.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~ 136 (348)
....|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44579999999999999999664
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0013 Score=55.13 Aligned_cols=22 Identities=32% Similarity=0.723 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+++|+|++|+|||||++.+.|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..++|+|++|+|||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999864
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0017 Score=55.19 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999863
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.00093 Score=56.51 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=25.3
Q ss_pred EEEEcCCCCChHHHHHHHhCCce-eeecCCCCceEEe
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHR 153 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~~t~~~ 153 (348)
|+|+|++|||||||+++|+.... ......+.||+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 89999999999999999975421 1123455555544
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0037 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..|+++|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999885
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0026 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++.+.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999874
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0032 Score=53.28 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6999999999999999999874
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0032 Score=53.82 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...|+|+|++|+|||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998874
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0037 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|--
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.003 Score=55.07 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=39.7
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
..+.++++|||+..... ....+..+|.+++|++.+.........+.+.+... .-..+.+|+||.+
T Consensus 130 ~~yD~viiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHL-----------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDL-GIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTTC-----------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccHH-----------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence 45789999998743211 12235789999999987543222223333344442 2245789999998
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0039 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0032 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..++|+|++|+|||||++.|.|.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999874
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.004 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 79999999999999999998743
|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.1 Score=45.12 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=41.9
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhccccc-CCCCEEEEEeccCCCCh
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP 241 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~ 241 (348)
+.+.++|||+..... ....+..+|.+++++..+.........+.+.++..+ ....+-+|+|++|....
T Consensus 119 yD~viiD~p~~~~~~-----------~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~ 187 (245)
T 3ea0_A 119 YDYIIVDFGASIDHV-----------GVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR 187 (245)
T ss_dssp CSEEEEEEESSCCTT-----------HHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT
T ss_pred CCEEEEeCCCCCchH-----------HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC
Confidence 568999999843211 223367899999999876433222233444444432 23457899999996543
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0045 Score=51.23 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++++|++|+|||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 699999999999999998664
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0047 Score=52.84 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
..|+|+|++|+|||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 369999999999999999998653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0049 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++++|+.|+|||||++.+.|--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0051 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
|
| >3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.053 Score=47.39 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=40.2
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhccccc-------CCCCEEEEEe
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-------DKLPILLVLN 234 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~-------~~~p~ivv~N 234 (348)
.+.++++|||+.... .....+..+|.+|+|++.+.........+...+.... ....+.+|+|
T Consensus 113 ~yD~viiD~p~~~~~-----------~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N 181 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET-----------GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLT 181 (260)
T ss_dssp TCSEEEEECCSSSSH-----------HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEE
T ss_pred CCCEEEEcCCCCCCH-----------HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEe
Confidence 578999999984321 1223356899999999885433222233344444321 1246789999
Q ss_pred ccCC
Q 018949 235 KKDL 238 (348)
Q Consensus 235 K~Dl 238 (348)
++|.
T Consensus 182 ~~~~ 185 (260)
T 3q9l_A 182 RYNP 185 (260)
T ss_dssp EECH
T ss_pred cCCc
Confidence 9984
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0053 Score=54.88 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0052 Score=54.58 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0051 Score=55.25 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|--
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999999853
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0046 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|+.|+|||||++.+.|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999998874
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0053 Score=54.73 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|--
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0056 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0052 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999853
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0056 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0056 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0061 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0061 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|--
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 79999999999999999999853
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0057 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..|+|+|++|+|||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0064 Score=54.01 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0065 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0065 Score=54.08 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|+.|+|||||++.+.|-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999985
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0065 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
..|+|+|++|+||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999987643
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0066 Score=53.65 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|+.|+|||||++.+.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999995
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0081 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+++|++|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.005 Score=52.91 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|+.|+|||||++.+.|-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999986
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0068 Score=54.15 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|+.|+|||||++.+.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999995
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0068 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|--
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.007 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|+.|+|||||++.+.|-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999853
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0074 Score=53.48 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0076 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0073 Score=53.77 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...++|+|++|+|||||++.+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3447999999999999999998863
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0083 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHh---CCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMI---GQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~---~~~ 139 (348)
..|+|+|++|+|||||++.|. |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 379999999999999999998 653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0059 Score=51.63 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5999999999999999998864
|
| >2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.14 Score=45.85 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=39.3
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcc----cccCCCCEE-EEEecc
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVG----DHKDKLPIL-LVLNKK 236 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~----~~~~~~p~i-vv~NK~ 236 (348)
.+.++++|||+..... ....+..+|.+|+++............+...+. ....+.+++ +|+|+.
T Consensus 154 ~yD~IiiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY-----------TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLV 222 (298)
T ss_dssp GCSEEEEEECSSCSHH-----------HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred CCCEEEEECCCCccHH-----------HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence 3679999999843211 111234589999999886544222222222222 112456644 899999
Q ss_pred CCCC
Q 018949 237 DLIK 240 (348)
Q Consensus 237 Dl~~ 240 (348)
|...
T Consensus 223 ~~~~ 226 (298)
T 2oze_A 223 DTDS 226 (298)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 9765
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.007 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999975
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0084 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|++|+||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0082 Score=54.70 Aligned_cols=24 Identities=46% Similarity=0.736 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.-.++|+|++|+|||||++.|.|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 344899999999999999999875
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0076 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|+|+|++|+||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998763
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0097 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0096 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|++|+||||+++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.01 Score=54.36 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|+|++|+|||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3447999999999999999998873
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0078 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=15.4
Q ss_pred EEEEEcCCCCChHHHHHHHh-CC
Q 018949 117 YVAVLGKPNVGKSTLANQMI-GQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~-~~ 138 (348)
.++|+|++|+|||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 79999999999999999999 65
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.013 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++|+|+.|+|||||++.+.|-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3379999999999999999999864
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0071 Score=55.18 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.-.++|+|++|+|||||++.+.|-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 338999999999999999999884
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.011 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+.++|+|++|+|||||++++++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 37999999999999999999864
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.013 Score=47.75 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQM 135 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l 135 (348)
.|+++|++|+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6999999999999999999
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=94.99 E-value=0.012 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|++|+|||||++.+.|-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 379999999999999999999853
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.0097 Score=51.06 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++|+|++|+|||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.012 Score=54.77 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=94.95 E-value=1.2 Score=40.51 Aligned_cols=83 Identities=11% Similarity=0.032 Sum_probs=47.5
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEeccCCCC---h------hhHHHHHHHHHhcCCCCeE--EEec
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIK---P------GEIAKKLEWYEKFTDVDEV--IPVS 264 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl~~---~------~~~~~~~~~~~~~~~~~~i--~~vS 264 (348)
+.+++|.................++. .++|+ -+|+|++.-.. + .........+....+..++ +|.-
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~--~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~ 300 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEK--YSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLL 300 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHH--CCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCC
Confidence 57888876653333333445555555 67776 48899998652 1 1112333444444444444 5566
Q ss_pred CCCCCCHHHHHHHHHHh
Q 018949 265 AKYGHGVEDIRDWILTK 281 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~ 281 (348)
...-.|++.|.......
T Consensus 301 ~~e~~g~~~L~~~~~~l 317 (324)
T 3zq6_A 301 KKEAKGIETLEKIAEQL 317 (324)
T ss_dssp SSCSCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 66777888877665443
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.013 Score=49.51 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...|+|+|++|+||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998763
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.018 Score=48.08 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457999999999999999998654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.014 Score=47.63 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0092 Score=49.47 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|++|+|||||++++.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|+|+.|+|||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999999876
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=54.57 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
....|+|+|++|+|||||++++++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 334899999999999999999876
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.02 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..|+|+|.+|+||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999875
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.14 Score=45.16 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
....+.|.|++|+|||+|+.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3447999999999999999998753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.9 Score=41.82 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=50.2
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEeccCCCCh---h------hHHHHHHHHHhcCCCCeE--EEe
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP---G------EIAKKLEWYEKFTDVDEV--IPV 263 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl~~~---~------~~~~~~~~~~~~~~~~~i--~~v 263 (348)
.+.+++|.................++. .++|+ -+|+|++..... . ........+....+..++ +|.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~--~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQK--YGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHH--CCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecC
Confidence 467888876654333333445555555 67777 488999986521 1 112333444444444443 666
Q ss_pred cCCCCCCHHHHHHHHHHhC
Q 018949 264 SAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l 282 (348)
....-.|++.|........
T Consensus 315 ~~~e~~g~~~L~~~~~~l~ 333 (349)
T 3ug7_A 315 LRTEAKGIETLKQIAKILY 333 (349)
T ss_dssp CSSCSCSHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHc
Confidence 7777789888876665554
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.0061 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999874
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.015 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 79999999999999999998853
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.015 Score=54.60 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 79999999999999999999853
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.016 Score=52.81 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|+|++|+|||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3447999999999999999998873
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.016 Score=54.19 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.017 Score=47.43 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999875
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|+|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.018 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|++|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.018 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|+|++|+||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.017 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 79999999999999999999853
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.023 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344799999999999999999864
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.021 Score=47.01 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|.+.|.+|+||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.017 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|++|+|||||++.+.|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 379999999999999999998853
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.093 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|+.++.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999998763
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.015 Score=47.08 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|++|+|||||++++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.019 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
++..|+|+|++|+|||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999865
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.016 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++.+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999984
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.017 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..++|+|++|+|||||++.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999985
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.094 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|+.++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998763
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.022 Score=49.44 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|.|..|+||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4447999999999999999998874
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.022 Score=47.40 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+++|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.022 Score=48.09 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+++|++|+||||+...|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.022 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|+|.+|+||||+.+.|.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.021 Score=48.35 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|+|.+|+|||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999875
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.26 Score=42.87 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|.+.|++|+|||+++.++..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
|
| >2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.034 Score=49.85 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=23.4
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
+.++++|||+.... .+...+..+|.+|+++..+
T Consensus 104 yD~viiD~p~~~~~-----------~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGDSA-----------ITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSCCH-----------HHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCccH-----------HHHHHHHHCCEEEEEEcCC
Confidence 57999999984321 1223467899999999875
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.013 Score=54.73 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+++|+|++|+|||||++.|.|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999874
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.026 Score=47.56 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|+|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 444799999999999999998854
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.021 Score=47.44 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998753
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.023 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.021 Score=47.28 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.02 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 79999999999999999998853
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.019 Score=53.90 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
....|+|+|++|+|||||++.+.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344799999999999999999986
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.022 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|+|.+|+|||||++.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.026 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~ 136 (348)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3479999999999999999886
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.022 Score=47.22 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.023 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 599999999999999998864
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.17 Score=47.78 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|..++.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 5999999999999999999763
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.015 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 79999999999999999999853
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.027 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4457999999999999999998764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.019 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
++++|++|+|||||++++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999873
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.029 Score=49.46 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
..|+|+|++|+||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|+|++|+|||||++++++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3447999999999999999999863
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.027 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.++|+|.+|+|||||++++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.034 Score=46.24 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+++|.+|+||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344799999999999999998864
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.15 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|..++.+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 6999999999999999999763
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.11 E-value=0.03 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|.+|+||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.023 Score=55.54 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++++++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999873
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.032 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..|+|.|.+|+||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.12 Score=49.01 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...|+++|.+|+||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999998753
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.028 Score=47.91 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.014 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.034 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+++|++|+||||+...|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 334699999999999999999864
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.039 Score=46.46 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|.|.+|+||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998863
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.031 Score=46.29 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.|+++|.+|+||||+.+.|.
T Consensus 7 ~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999985
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.033 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.031 Score=46.21 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...+|+|+.|+|||||+.++.+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999854
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.023 Score=46.84 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=15.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~ 136 (348)
...|+|.|.+|+||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999985
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.03 Score=47.73 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999853
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.023 Score=49.81 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
++++|++|+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999863
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.034 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.091 Score=47.31 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-+.+.|+||+|||+|..++..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577779999999999999865
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.038 Score=54.36 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.|.|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.035 Score=47.85 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
..|+|.|.+|+||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.037 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+++|.+|+||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.2 Score=44.32 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+.|.|++|+|||+|++++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999865
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.026 Score=54.39 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+..+++|+|+.|+|||||++.|.|-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3448999999999999999999864
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.21 Score=47.52 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|+.++.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 6999999999999999999764
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.03 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCC
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.+.-+++|+|++|+|||||++.+.+.
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34558999999999999999999875
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.028 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.705 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||+..+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998853
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.033 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.+.|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.043 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+.|.|++|+|||+|++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988653
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.048 Score=45.11 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.035 Score=45.62 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999998854
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.041 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+..+|+|.|.+|+||||+...|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999863
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.039 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998853
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.037 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.042 Score=44.59 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998854
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.18 Score=42.22 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+.+.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998865
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.031 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.032 Score=51.33 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999998764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.033 Score=49.65 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|+|+|++|+|||||++++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999863
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.061 Score=46.39 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|.|+|+||+||+|....|..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 33577899999999999988764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.037 Score=48.71 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+++|.+|+||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999864
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.04 Score=45.59 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|+|.+|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998753
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.17 Score=47.12 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
-.+|+|++|+|||||++++.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57799999999999999976
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.068 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|+.++.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.048 Score=46.51 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|.+|+||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.045 Score=46.65 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.27 E-value=0.047 Score=45.28 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.043 Score=54.82 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 89999999999999999999853
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.049 Score=54.14 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++++|++|+|||||++.+.|-.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3389999999999999999999853
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.043 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.051 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.039 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
-.++|+|++|+|||||++.+.|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999874
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.022 Score=48.29 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.048 Score=54.44 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|+.|+|||||++.+.|.-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 379999999999999999999853
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.057 Score=47.39 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999998854
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.061 Score=43.31 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
+..+|+|+.|+||||++.++.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999975
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.055 Score=53.76 Aligned_cols=25 Identities=36% Similarity=0.443 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++++|++|+|||||++.+.|-.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3389999999999999999998853
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.071 Score=47.73 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~ 136 (348)
+...|+|.|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34479999999999999999986
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.054 Score=44.13 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998753
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.056 Score=45.84 Aligned_cols=21 Identities=38% Similarity=0.243 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++|+|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.051 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.054 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=92.81 E-value=0.054 Score=51.87 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCC
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+-.+.-+++|+|++|+|||||++.+.+.
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3345558999999999999999999874
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.054 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++++|++|+|||||++.+.|-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3489999999999999999999853
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.061 Score=45.94 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|.|+|+||+||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.068 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+++|.+|+||||+.+.|.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.047 Score=47.12 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||+..+.+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7999999999999999999873
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.061 Score=46.26 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.069 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|.+|+||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.064 Score=46.78 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~ 136 (348)
...|+|.|++|+||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999886
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.06 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|++|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.058 Score=53.09 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|+.|+|||||++.+.|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=92.67 E-value=0.045 Score=54.33 Aligned_cols=25 Identities=36% Similarity=0.298 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++++|++|+|||||++.+.|--
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3389999999999999999998853
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=92.63 E-value=0.25 Score=43.35 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=43.3
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
.+.+.++|||+.... .....+..+|.+|+++..+.........+.+.++..+.+.++.+|+|+++.
T Consensus 144 ~yD~viiD~pp~~~~-----------~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV-----------TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSH-----------HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccH-----------HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 467999999984321 122335679999999988654333333445555554456788899999953
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=92.62 E-value=0.07 Score=45.65 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...+.|.|++|+|||+|+.++..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=92.53 E-value=0.086 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|.|.+|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 344799999999999999999864
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.056 Score=44.18 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+.|.|++|+|||+|+.++..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.061 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 33799999999999999999886
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=92.40 E-value=0.056 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|+++|++|+|||||++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999998753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.066 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999854
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.06 Score=53.54 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.-.++++|++|+|||||++.+.|-
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 338999999999999999999884
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.075 Score=43.20 Aligned_cols=21 Identities=29% Similarity=0.331 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998753
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.083 Score=45.78 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 444899999999999999998864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.2 Score=45.71 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-|.+.|+||+|||+|+.++..
T Consensus 47 ~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=92.17 E-value=0.085 Score=44.26 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+.|.|++|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.6 Score=42.13 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-+.+.|++|+|||+++.++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 356667799999999999864
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.09 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
....|++.|.+|+||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999998864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.082 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.58 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|++|+|||+|+.++..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=91.43 E-value=0.095 Score=46.65 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999876
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.15 Score=43.31 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.|+|+|++|+|||||...|...-
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 69999999999999999998654
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=0.25 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|.|.|++|+|||+++.++..
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3699999999999999999864
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=0.38 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|++++.+.
T Consensus 240 GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=0.11 Score=44.05 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+.|.|++|+|||||+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.12 Score=41.14 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|.|.|++|+|||++..++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5999999999999999998653
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.14 Score=45.84 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...+.|.|+||+|||+++.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 33699999999999999987654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.13 Score=43.62 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
...+|+|+.|+||||++.++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999974
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=91.03 E-value=0.12 Score=46.32 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=91.01 E-value=0.11 Score=44.46 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.+++.|+||+||||++.++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999998887765
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.13 Score=43.19 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.14 Score=45.78 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|.+.|++|+|||++++++.+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3799999999999999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.08 Score=57.72 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=0.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|||++|+|||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=90.89 E-value=0.14 Score=46.70 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|++|+|||||...|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 4689999999999999999864
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.84 E-value=0.092 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++|.|++|+||||+++++.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999876
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=90.75 E-value=0.017 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++++.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999874
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.35 Score=41.70 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=24.7
Q ss_pred cEEEEEecCCCCCc-hHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 197 DCIVVLVDACKAPE-RIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 197 d~iv~VvD~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+.-++++|-.+-.. .+.+.+ ..+.. .++|+|+++-..|-..
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccccccC
Confidence 34466778765442 222333 33333 4799999999999754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.17 Score=45.34 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++++|++|+|||+++.++.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999998865
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.67 E-value=0.12 Score=47.68 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 336999999999999999998763
|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=0.79 Score=40.10 Aligned_cols=67 Identities=19% Similarity=0.138 Sum_probs=40.8
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDL 238 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl 238 (348)
+.+.++++|||+..... .+ . ...+..+|.+|+|+..............+.++. .+.+++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~--~~-~------~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~--~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDA--PL-T------VMQDAKPTGVVVVSTPQELTAVIVEKAINMAEE--TNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSH--HH-H------HHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHT--TTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchH--HH-H------HHhhccCCeEEEEecCccchHHHHHHHHHHHHh--CCCCEEEEEECCCcc
Confidence 45789999999843211 01 0 011226899999998765443333334444444 467777 99999874
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.54 E-value=0.13 Score=44.25 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.++|+|++|+|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999987765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=90.53 E-value=0.076 Score=55.70 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.|.|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999853
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.49 E-value=0.17 Score=41.92 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~ 140 (348)
-|+|.|++|+||||+.-.|.....
T Consensus 18 gvli~G~SGaGKStlal~L~~rG~ 41 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRGH 41 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCC
Confidence 599999999999999999876443
|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.35 Score=42.91 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=41.6
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLI 239 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~ 239 (348)
+.++++|||+..... . .......+|.+|+|+..............+.+.. .+.+++ +|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~-d---------~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~--~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-D---------AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEA--TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-H---------HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHT--TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-H---------HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHh--CCCCEEEEEEeCCcCC
Confidence 468999999853311 0 1112346899999999876554444455555555 456666 899999864
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=90.37 E-value=0.16 Score=45.70 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|++.|++|+|||+|++++.+
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=90.36 E-value=0.16 Score=44.01 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|..|+||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.32 E-value=0.13 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=90.28 E-value=0.1 Score=46.93 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|.|.+|+||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998764
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.21 E-value=0.44 Score=44.02 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|++|+|||+|+.++..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=90.19 E-value=0.17 Score=43.95 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+++|+|.||+||||+...|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 34899999999999999998754
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=0.17 Score=45.87 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+.|.|++|+|||||++++.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999875
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=90.05 E-value=0.052 Score=51.25 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.++|+|+.|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999873
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=90.04 E-value=0.63 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|.|.|+||+|||+|+.++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=0.18 Score=46.91 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.6
Q ss_pred CccEEEEEcCCCCChHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQM 135 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l 135 (348)
+..+|+++|.+++||||++..+
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4458999999999999999886
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.12 Score=40.93 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|.+.|++|+|||++..++...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5999999999999999988764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 348 | ||||
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 5e-33 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 5e-26 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 5e-23 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 2e-22 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 3e-22 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 5e-21 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 3e-20 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 2e-18 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 3e-18 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 5e-16 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 6e-16 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 3e-15 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 5e-14 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 2e-13 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 7e-13 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 8e-12 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-11 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 4e-11 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 1e-10 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-10 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-10 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 2e-10 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 4e-10 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 5e-10 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 6e-10 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 7e-10 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 8e-10 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 2e-09 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 2e-09 | |
| d1wf3a2 | 118 | d.52.3.1 (A:181-298) GTPase Era C-terminal domain | 3e-09 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 4e-09 | |
| d1egaa2 | 113 | d.52.3.1 (A:183-295) GTPase Era C-terminal domain | 4e-09 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 5e-09 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 7e-09 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 7e-09 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 8e-09 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 1e-08 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 2e-08 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 3e-08 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 4e-08 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 5e-08 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 7e-08 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 1e-07 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 1e-07 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 2e-07 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-07 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 2e-07 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 3e-07 | |
| d1wxqa1 | 319 | c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr | 6e-07 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 7e-07 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 7e-07 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 9e-07 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 1e-06 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 1e-06 | |
| d1puja_ | 273 | c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti | 1e-06 | |
| d1puja_ | 273 | c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti | 2e-04 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 2e-06 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 4e-06 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 4e-06 | |
| d1u0la2 | 225 | c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C | 6e-06 | |
| d1u0la2 | 225 | c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C | 1e-05 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 8e-06 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 1e-05 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 2e-05 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 2e-05 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 2e-05 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 2e-05 | |
| d1yrba1 | 244 | c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09 | 2e-05 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 3e-05 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 1e-04 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 2e-04 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 2e-04 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 5e-04 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 6e-04 | |
| d1t9ha2 | 231 | c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C | 6e-04 | |
| d1ni3a1 | 296 | c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter | 7e-04 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 8e-04 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 0.001 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 0.001 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 0.002 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 0.002 | |
| d1ly1a_ | 152 | c.37.1.1 (A:) Polynucleotide kinase, kinase domain | 0.002 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 0.003 |
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 119 bits (297), Expect = 5e-33
Identities = 54/181 (29%), Positives = 101/181 (55%), Gaps = 4/181 (2%)
Query: 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP 171
G++A++G+PNVGKSTL N+++GQK+SI + K QTTRHRI+GI + YQ I DTP
Sbjct: 2 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP 61
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL 231
G+ ++ ++ +M K S+ + + ++ +V+ + + +L + + K P++L
Sbjct: 62 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNK---LREGKAPVIL 118
Query: 232 VLNKKDLIKPGEIAKKLEWY-EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYP 290
+NK D ++ + + +++P+SA+ G V+ I + LP ++P
Sbjct: 119 AVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFP 178
Query: 291 K 291
+
Sbjct: 179 E 179
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 100 bits (249), Expect = 5e-26
Identities = 61/180 (33%), Positives = 97/180 (53%), Gaps = 3/180 (1%)
Query: 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTP 171
SG+VA++GKPNVGKSTL N ++G K++ ++ +PQTTR R+ GI + Q I++
Sbjct: 2 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ-IVFVDT 60
Query: 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILL 231
+ K + L M + V A + + +V +VD P DE++ + K+PILL
Sbjct: 61 PGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILL 120
Query: 232 VLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK 291
V NK D K E A ++ Y + E +SA V +++ +L +P GP +YP+
Sbjct: 121 VGNKLDAAKYPEEA--MKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPE 178
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 92.3 bits (228), Expect = 5e-23
Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 9/182 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G P+VGKSTL + + K I T + + + ++ D PG+IE
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63
Query: 178 IHM--LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKD---KLPILLV 232
L ++++ + I + + P + + + ++ + P ++V
Sbjct: 64 HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 123
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY--YP 290
NK D+ + E + + K TD V P+SA G+ ++ + +L P + Y
Sbjct: 124 ANKMDMPEAAENLEAFKE--KLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPLYD 181
Query: 291 KD 292
++
Sbjct: 182 EE 183
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 90.0 bits (222), Expect = 2e-22
Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 7/164 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ ++GKPNVGKSTL N+++ + +IVT+ P TTR I + DT G+ +
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+++ + ++ AD ++ ++DA + D + E + + + +V+NK D
Sbjct: 63 NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYL----VVINKVD 118
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281
+++ E K ++ +SA G G+E + + I +
Sbjct: 119 VVEKINEE---EIKNKLGTDRHMVKISALKGEGLEKLEESIYRE 159
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 90.1 bits (222), Expect = 3e-22
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 8/180 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G PN GKS+L M I T + + E + L D PGIIE
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL---PILLVLN 234
+ ++ ++DA P + E L + VG + L P L+ LN
Sbjct: 64 SEGKG--LGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121
Query: 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA-YYPKDI 293
K DL++ + + + + V+PVSA G G+ +++ + + P PK +
Sbjct: 122 KVDLLEEEAVKALADALAR--EGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPKPV 179
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 86.7 bits (213), Expect = 5e-21
Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G+PNVGKSTL N+++ +K +IV ++ TR + L DT G+ +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
++ M + + AD ++ +VD + + DE L + + + V NK +
Sbjct: 63 QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTIL--VANKAE 120
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
++ E K E Y E IPVSA++ ++ + + I+ KL
Sbjct: 121 NLREFEREVKPELYSL--GFGEPIPVSAEHNINLDTMLETIIKKLE 164
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 84.7 bits (208), Expect = 3e-20
Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 26/186 (13%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ G+ NVGKSTL ++ G+K+ +P TR + D PG
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----IEIEWKNHKIIDMPGFGFMM 57
Query: 178 IHMLDSMM------MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH-------- 223
+ + + N D V++VD APE I + G
Sbjct: 58 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 117
Query: 224 -KDKLPILLVLNKKDLIKPGE-----IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277
+ +P ++ +NK D IK + +A+K E D IP+SAK+G +E +++
Sbjct: 118 RELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDK-VFIPISAKFGDNIERLKNR 176
Query: 278 ILTKLP 283
I +
Sbjct: 177 IFEVIR 182
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 79.7 bits (195), Expect = 2e-18
Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 10/173 (5%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK- 176
VA++G+PNVGKSTL N ++ ++ ++V+ P TTR + + + DT G+ K
Sbjct: 11 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 70
Query: 177 --KIHMLDSMMMKNVRSAGINADCIVVLVD-----ACKAPERIDEILEEGVGDHKDKLPI 229
+ ++ V + AD +V+++D + + G
Sbjct: 71 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKW 130
Query: 230 LLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
LV++++ K F D +I SA G ++ + D +
Sbjct: 131 DLVVHREKRYDEFT--KLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY 181
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 79.0 bits (193), Expect = 3e-18
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V + G+PN GKS+L N + G++ +IVT+ TTR + + + DT G+ E
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + + + + ++ EI E + KLPI +V NK D
Sbjct: 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 123
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
+ ++ + +I +SA+ G GV+ +R+ + +
Sbjct: 124 ITGETLGMSEVNGH-------ALIRLSARTGEGVDVLRNHLKQSM 161
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 73.6 bits (179), Expect = 5e-16
Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 5/188 (2%)
Query: 99 DYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGI 157
+ I +P +A+ G+ NVGKS+ N +I +K L+ ++KP T+ I
Sbjct: 7 EIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI 66
Query: 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217
+ + + + G + ++ + V+ ++ ++
Sbjct: 67 INDELHFVDVPGY-GFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ 125
Query: 218 EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV---DEVIPVSAKYGHGVEDI 274
+P++++ K D I G+ K + + ++ DE+I S++ G ++
Sbjct: 126 MYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEA 185
Query: 275 RDWILTKL 282
I +
Sbjct: 186 WGAIKKMI 193
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 74.5 bits (182), Expect = 6e-16
Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+GK VGKS+ N +IG+++ ++ ++ S + + + DTPG+IE
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 94
Query: 178 IHMLDSMMM--KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL--PILLVL 233
++ + + I+ V +DA + + + + ++ L
Sbjct: 95 YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVAL 154
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVI---------------PVSAKYGHGVEDIRDWI 278
P + + ++ + +V+ PV G + D
Sbjct: 155 THAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSD 214
Query: 279 LTKLPLGPAYYPK------DIVSEHPERFFVGEIIREK 310
LP G A+ P ++ E FV + + +K
Sbjct: 215 EKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLIDK 252
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 71.0 bits (172), Expect = 3e-15
Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 4/172 (2%)
Query: 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDT 170
P+ VA G+ N GKS+ N + QK T+K I +++
Sbjct: 12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPG 71
Query: 171 PGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL 230
G E M ++V D + + +L
Sbjct: 72 YGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVL 131
Query: 231 LVLNKKDLIKPGEIAKKLEWYEK----FTDVDEVIPVSAKYGHGVEDIRDWI 278
++L K D + G +L + F +V S+ GV+ +R +
Sbjct: 132 VLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.2 bits (171), Expect = 5e-14
Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 33/191 (17%)
Query: 117 YVAVLGKPNVGKSTLANQMIGQKL----SIVTNKPQTTRHRILGICSGPEYQMILYDTPG 172
VAV G+ GKS+ N + G + T + T R ++ +D PG
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPG 116
Query: 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232
I + + ++ + ++ D + + + K V
Sbjct: 117 IGSTNFPPDTYLEKMK------FYEYDFFIIISATRFKKNDIDIAKAI--SMMKKEFYFV 168
Query: 233 LNKKDLIKPGEIAKKLEWYEKFTDVDE------------------VIPVSAK--YGHGVE 272
K D E + + ++K + + + +S K +
Sbjct: 169 RTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFP 228
Query: 273 DIRDWILTKLP 283
+ D +++ LP
Sbjct: 229 VLMDKLISDLP 239
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.6 bits (161), Expect = 2e-13
Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 23/205 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ + G N GK++L + + +P L + L D PG ++ +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSV-----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH-------KDKLPIL 230
+ D + + ++ +VD+ P+++ E V ++ + IL
Sbjct: 61 YKLSDYLKTRAKFV-----KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 115
Query: 231 LVLNKKDLIKPGEIAKKLEWYEKFTDVDEVI----PVSAKYGHGVEDIRDWILTKLPLGP 286
+ NK +L +K + E + ED + L L
Sbjct: 116 IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175
Query: 287 AYYPKDIVSEHPERFFVGEIIREKI 311
+ ++ E F G I + KI
Sbjct: 176 GFKFANL--EASVVAFEGSINKRKI 198
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (155), Expect = 7e-13
Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 6/165 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G VGKS L ++ + ++ + I + E+
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + +V + E ++ L+E + I+LV NK D
Sbjct: 67 RRITSAYYRGA------VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L + + I SA VE+ ILT++
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.9 bits (146), Expect = 8e-12
Identities = 30/173 (17%), Positives = 53/173 (30%), Gaps = 20/173 (11%)
Query: 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175
G + LG N GK+TL + + +L+ + Q T H + + +D
Sbjct: 1 GKLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLG--GH 54
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235
+ L V D D + E E+ +P +++ NK
Sbjct: 55 IQARRLWKDYFPEVNGIVFLVDAA----DPERFDEARVELDALFNIAELKDVPFVILGNK 110
Query: 236 KDL---IKPGEIAKKL-------EWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
D + E+ L + EV S +G + W+
Sbjct: 111 IDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 163
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 59.3 bits (142), Expect = 2e-11
Identities = 24/168 (14%), Positives = 58/168 (34%), Gaps = 13/168 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG N GK+T+ + G+ + ++ T + +++ ++D G +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTIS----PTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + + +++ + D + + + +L+ NK+D
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE------RLAGATLLIFANKQD 114
Query: 238 LIKPGEIAKKLEWYEKFTDVDE---VIPVSAKYGHGVEDIRDWILTKL 282
L E E + + SA G + DW+L +
Sbjct: 115 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 58.8 bits (141), Expect = 4e-11
Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 21/172 (12%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG N GK+TL Q+ + +S +T + + + G
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITP--------------TQGFNIKSVQSQGFKLNV 64
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK----DKLPILLVL 233
+ ++ + I++ V +R +E +E + +P+L+
Sbjct: 65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124
Query: 234 NKKDLI---KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
NK+DL+ EIA+ L + V ++ SA G GV+D +W+ +
Sbjct: 125 NKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 57.8 bits (138), Expect = 1e-10
Identities = 29/167 (17%), Positives = 62/167 (37%), Gaps = 1/167 (0%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ + G + GK+TL+ + + +K ++ R + I G + +++
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAP 67
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
H + + A +V + K ++ + + +
Sbjct: 68 GHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE 127
Query: 238 LIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
IK E I K + +IP+SAK G GV+++++ I+T L
Sbjct: 128 EIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 174
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 57.0 bits (136), Expect = 2e-10
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 7/165 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ ++G GK+T+ ++ ++ T + ++D G + +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTI----PTIGFNVETVEYKNISFTVWDVGGQDKIR 58
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
I +A E + +L E L + +
Sbjct: 59 PLW---RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
+ EI KL + + A G G+ + DW+ +L
Sbjct: 116 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 57.0 bits (136), Expect = 2e-10
Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 7/165 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG GK+T+ ++ ++ Y+ + + +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVET-------VTYKNLKFQVWDLGGLT 60
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ A I + + +LEE + + +
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
+ E+A L ++ SA G G+++ +W++ L
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.1 bits (137), Expect = 2e-10
Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 12/168 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-CSGPEYQMILYDTPGIIEK 176
+ ++G VGK+ + + + +I I G ++ ++DT G
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ--- 65
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLN 234
++ R A I+++ D + I + + +++ N
Sbjct: 66 --ERFRTITTAYYR----GAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119
Query: 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
K D+ +++K+ + + SAK VE+ + +
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 55.8 bits (133), Expect = 4e-10
Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 7/165 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G N GK+T+ Q ++ + T + + +++D G +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTS----PTIGSNVEEIVINNTRFLMWDIGGQESLR 73
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ N + D + E + ++L L + K+
Sbjct: 74 SSW--NTYYTNTEFVIVVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKE 130
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
+ EI++ L+ + A G G+ +W++++L
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.7 bits (133), Expect = 5e-10
Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 12/168 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMI-LYDTPGIIEK 176
V+G GKS L +Q I +K +N I G +Y + ++DT G
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG---- 63
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDAC--KAPERIDEILEEGVGDHKDKLPILLVLN 234
RS A +++ D + + L + + I+L N
Sbjct: 64 -----QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 118
Query: 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
KKDL E+ + + SA G VE+ K+
Sbjct: 119 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 55.5 bits (132), Expect = 6e-10
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 12/165 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ ++G GK+T N + + T + + + L+D G +
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQ---FNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ ++A K +E+ +P+L++ NK+D
Sbjct: 62 SMWERYCRGVSAIVYMVDAADQ------EKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 115
Query: 238 LIKPGEIAKKLEWYEKFTDVDE---VIPVSAKYGHGVEDIRDWIL 279
L + + +E D +S K ++ W++
Sbjct: 116 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 55.5 bits (132), Expect = 7e-10
Identities = 31/184 (16%), Positives = 55/184 (29%), Gaps = 25/184 (13%)
Query: 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173
K+G + LG N GK+TL + + +L T + M
Sbjct: 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEEL------TIAGMTFTTFDLG 65
Query: 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 233
+ + + + DC D + E +E+ + +PIL++
Sbjct: 66 GHIQARRVWKNYLPAINGIVFLVDC----ADHERLLESKEELDSLMTDETIANVPILILG 121
Query: 234 NKKDL---IKPGEIAKKLEWYEKFTDVD------------EVIPVSAKYGHGVEDIRDWI 278
NK D I + + Y + T EV S G + W+
Sbjct: 122 NKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181
Query: 279 LTKL 282
+
Sbjct: 182 AQYI 185
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.8 bits (131), Expect = 8e-10
Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 13/168 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-CSGPEYQMILYDTPGIIEK 176
+ ++G VGKS L + + K + +I + +G + ++ ++DT G ++
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG--QE 62
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDA--CKAPERIDEILEEGVGDHKDKLPILLVLN 234
+ + + + A I+++ D + I + + D+ +LLV N
Sbjct: 63 RFRTITTAYYR-------GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 115
Query: 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
K D+ A + E K + I SAK V +I + +
Sbjct: 116 KSDMETRVVTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLI 162
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 53.8 bits (128), Expect = 2e-09
Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 8/166 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G VGKS L Q + + + +R + G E Q+ + DT G +
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY- 65
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKK 236
++ RS V + ++ + E+ + +D+ +P LLV NK
Sbjct: 66 ----AAIRDNYFRSG--EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
DL +++ + + SAK V+ + ++ ++
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.7 bits (128), Expect = 2e-09
Identities = 22/166 (13%), Positives = 57/166 (34%), Gaps = 8/166 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEK 176
+ ++G +VGK++ + + ++ I + ++ ++DT G
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG---- 63
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
++ R A ++ + ++ + + + D +LLV NK
Sbjct: 64 -QERYRTITTAYYRGA--MGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
D+ ++ + E SAK V+ + ++ +
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
|
| >d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Prokaryotic type KH domain (KH-domain type II) family: Prokaryotic type KH domain (KH-domain type II) domain: GTPase Era C-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 52.1 bits (125), Expect = 3e-09
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 292 DIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQH 332
S+ +V EI+RE+ + +EVPYA
Sbjct: 2 YAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAE 42
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 4e-09
Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 8/166 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEK 176
+ ++G VGK+ L + I + +G + ++ ++DT G
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--- 64
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
S+ RSA NA + + ++ + E L E +K+ +LV NK
Sbjct: 65 --ERFRSITQSYYRSA--NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
DL + E++++ + SAK VE + + +L
Sbjct: 121 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
|
| >d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain {Escherichia coli [TaxId: 562]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Prokaryotic type KH domain (KH-domain type II) family: Prokaryotic type KH domain (KH-domain type II) domain: GTPase Era C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 51.4 bits (123), Expect = 4e-09
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 292 DIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTF---QHWLIFVEFNAFLN 344
D +++ +RF EIIREK+ E+PY+ V F + + +
Sbjct: 1 DYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVE 56
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (126), Expect = 5e-09
Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 8/166 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEK 176
+ ++G VGKS L + + +I + + ++ ++DT G ++
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG--QE 66
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
+ + S + + IV V ++ + L+E + LLV NK
Sbjct: 67 RFRTITSSYYRGS-----HGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 121
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
DL + + + + SA VED + ++
Sbjct: 122 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 167
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 7e-09
Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 6/165 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
++G VGKS L Q ++ T + + I ++
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
S+ R A +V + + + LE+ + I+L+ NK D
Sbjct: 64 SFR--SITRSYYRGA--AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 119
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L ++ ++ + SAK VE+ ++
Sbjct: 120 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 52.7 bits (125), Expect = 7e-09
Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 13/168 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG GK+T+ ++ ++ T + S ++ ++D +
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYKNLKLNVWDLG--GQTS 73
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
I + + D D + E+ + +L+ NK+D
Sbjct: 74 IRPYWRCYYADTAAVIFVVDST----DKDRMSTASKELHLMLQEEELQDAALLVFANKQD 129
Query: 238 L---IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
+ E++K+L E ++ SA G G+ + DW++ +
Sbjct: 130 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 8e-09
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 6/165 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V VLG VGKS L Q + + +R + + DT G +
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA 65
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + LV+ + + +K+P++LV NK D
Sbjct: 66 SMRDLYIKNGQ------GFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L E++ + SAK V+++ I+ ++
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.6 bits (122), Expect = 1e-08
Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 2/165 (1%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG VGK++L NQ + +K T L + +++ ++
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKK--FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + + DE L + + P +++ NK D
Sbjct: 63 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L K+ + + + SAK VE I
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 2e-08
Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 9/167 (5%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR--HRILGICSGPEYQMILYDTPGIIE 175
V ++G VGK+ L + T + G + ++ ++DT G
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG--- 65
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235
S+ R A +A ++ V + + I L E + + ++L+ NK
Sbjct: 66 --QERFRSVTHAYYRDA--HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121
Query: 236 KDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
D + ++ + SAK G V+ I +L
Sbjct: 122 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 3e-08
Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 3/165 (1%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V ++G+ VGKSTLAN G S+ ++ + +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDT---YERTLMVDGESATIILLDMWE 62
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + + G + + D + + ++ + +PI+LV NK D
Sbjct: 63 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 122
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L++ E++ + I SA H V+++ + I+ ++
Sbjct: 123 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.3 bits (119), Expect = 4e-08
Identities = 22/165 (13%), Positives = 48/165 (29%), Gaps = 2/165 (1%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG VGKS+L N+ + K T T L + + ++
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFD--TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + E + + P +++ NK D
Sbjct: 67 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
+ + ++ + + + SAK V + + ++
Sbjct: 127 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 5e-08
Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 8/166 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEK 176
+ ++G+ VGKS+L + ++ I G + ++ ++DT G E+
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG-QER 68
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
+ S G +V V ++D L E + +++ K
Sbjct: 69 FRTLTPSYYR------GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNK 122
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
+ E+ + I SAK GV+ + ++ K+
Sbjct: 123 IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (116), Expect = 7e-08
Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 7/165 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+G VGKS L Q+I + +R + G + + DT G E
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS 65
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
M + D + E+I + D +P++LV NK D
Sbjct: 66 AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRV------KDSDDVPMVLVGNKCD 119
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L +++ + + + I SAK GVED ++ ++
Sbjct: 120 LAARTVESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVREI 163
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-07
Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 6/165 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+G VGKS L Q I + + + G ++ + DT G E
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 68
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
M + + + K +I + +D P++LV NK D
Sbjct: 69 AMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRV------KDRDDFPVVLVGNKAD 122
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L ++ + + SAK V++ + ++ +
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.5 bits (114), Expect = 1e-07
Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 7/169 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175
V +LG VGK++L ++ + K S + + + M ++DT G
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 64
Query: 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235
+ + + + + DE L + + P +++ NK
Sbjct: 65 FQSLGVAFYRGADCC---VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121
Query: 236 KDLIKPGEIAKKLEWYEKFTDVDEV--IPVSAKYGHGVEDIRDWILTKL 282
D + +I + E + ++ SAK V+ + I
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (114), Expect = 2e-07
Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 8/166 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEK 176
++G VGKS L +Q +K I SG + ++ ++DT G
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG---- 62
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
++ R A +V + + L + I+L+ NK
Sbjct: 63 -QERFRAVTRSYYRGA--AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 119
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
DL ++ + + + SAK G VED K+
Sbjct: 120 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 48.4 bits (114), Expect = 2e-07
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 13/168 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG GK+T+ ++ + + T + + + ++D G + +
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQ----SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 70
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
++ + +A + E+ IL+ NK+D
Sbjct: 71 PLWRHYYTGTQGLIFVVDCADRDRIDEARQ------ELHRIINDREMRDAIILIFANKQD 124
Query: 238 L---IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L +KP EI +KL V P A G G+ + W+ +
Sbjct: 125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 2e-07
Identities = 32/167 (19%), Positives = 66/167 (39%), Gaps = 8/167 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
+ LG+ +VGK++L + + + ++ L+DT G ++
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG--QE 60
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
+ L +++ +A + D V + + ID++ E + I+LV NK
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNV-NSFQQTTKWIDDVRTE----RGSDVIIMLVGNKT 115
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
DL +++ + + I SAK G+ V+ + + LP
Sbjct: 116 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 162
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 3e-07
Identities = 28/178 (15%), Positives = 53/178 (29%), Gaps = 20/178 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V+G VGK+ L + + G + L+DT
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA------ 61
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
D ++ + + I + + + E + V H PI+LV K D
Sbjct: 62 -GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120
Query: 238 LIKPGEIAKKLEWYEKFTDVDEV-------------IPVSAKYGHGVEDIRDWILTKL 282
L + +KL+ + + SA G++ + D + +
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 48.0 bits (113), Expect = 6e-07
Identities = 32/241 (13%), Positives = 73/241 (30%), Gaps = 35/241 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--------------RHRILGICSGPEY 163
+ V+GKPNVGKST + + I N P TT + LG P+
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 164 ----------QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID 213
+ + D G++ + A ++ +VD +
Sbjct: 62 YEYRNGLALIPVKMVDVAGLVP--GAHEGRGLGNKFLDDLRMASALIHVVD-ATGKTDPE 118
Query: 214 EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273
+ +D + ++ G ++K + + K + ++ SA E
Sbjct: 119 GQPTDYHDPVEDIEFLEREIDYWIY---GILSKGWDKFAKRIKLQKIKLESAIA----EH 171
Query: 274 IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHW 333
+ + + + A + ++ + + + + + A +
Sbjct: 172 LSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQ 231
Query: 334 L 334
+
Sbjct: 232 I 232
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.3 bits (111), Expect = 7e-07
Identities = 14/135 (10%), Positives = 38/135 (28%), Gaps = 6/135 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +G + GK+ L +++ + + + ++ +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ +++ V I + + +L+ NK+D
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSP---SLLIACNKQD 119
Query: 238 LIK---PGEIAKKLE 249
+ I ++LE
Sbjct: 120 IAMAKSAKLIQQQLE 134
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 47.4 bits (111), Expect = 7e-07
Identities = 35/214 (16%), Positives = 64/214 (29%), Gaps = 54/214 (25%)
Query: 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTNKPQTTRHRILGICSGPEY 163
S V+VLG + GK+TL + + G ++ T P I G
Sbjct: 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFS 64
Query: 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH 223
I+ H + + K + A IV + + K + +
Sbjct: 65 IRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNIL-----R 119
Query: 224 KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDE------------------------ 259
+ P ++ NK D I + + + E F+ D
Sbjct: 120 MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFES 179
Query: 260 --------------VIPVSAKYGHGVEDIRDWIL 279
+IP+SA G G+ ++ ++
Sbjct: 180 ERFDRVTDFASQVSIIPISAITGEGIPELLTMLM 213
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.2 bits (108), Expect = 9e-07
Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 6/166 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG VGKS++ + + N + E L +E+
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 66
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + IV + + + + E + + + NK D
Sbjct: 67 RALAPMYYRGSAA------AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
L E+ ++ + + SAK + ++ I ++P
Sbjct: 121 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 1e-06
Identities = 30/162 (18%), Positives = 49/162 (30%), Gaps = 5/162 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
VAV G VGKS+L + + T + +
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFR---ESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + A I I + ++I E + +PI+LV NK D
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEI--KGDVESIPIMLVGNKCD 119
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279
E+ T + SAK H V+++ +L
Sbjct: 120 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 161
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.8 bits (107), Expect = 1e-06
Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 9/170 (5%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +LG+ VGKS++ + + + I + + I
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDF------AENKEPTIGAAFLTQRVTINEHTVKFEIWDT 59
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + A +V V ++ + ++E + I LV NK D
Sbjct: 60 AGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119
Query: 238 LIKPGEIAKKLEWYEKFTDVD---EVIPVSAKYGHGVEDIRDWILTKLPL 284
+++ G K + + SAK G V D+ I K+PL
Sbjct: 120 MLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Score = 47.1 bits (111), Expect = 1e-06
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 108 ASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMIL 167
A ++ ++G PNVGKSTL N++ + ++ ++P T + + G ++ L
Sbjct: 105 AKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW-VKVGK--ELEL 161
Query: 168 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE 218
DTPGI+ K D ++ + G D I+ L D LEE
Sbjct: 162 LDTPGILWPKFE--DELVGLRLAVTGAIKDSIINLQDVA---VFGLRFLEE 207
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 19/141 (13%)
Query: 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAP-----ERIDEILEEGVGDHKDKLPILLVL 233
HM + + V D + LVDA + P I++IL K+K P +++L
Sbjct: 1 HM--AKARREVTEKLKLIDIVYELVDA-RIPMSSRNPMIEDIL-------KNK-PRIMLL 49
Query: 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293
NK D + E +E + +++ G G+ I L
Sbjct: 50 NKADKADAAVTQQWKEHFEN--QGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKG 107
Query: 294 VSEHPER-FFVGEIIREKIFM 313
V R +G K +
Sbjct: 108 VKPRAIRALIIGIPNVGKSTL 128
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 2e-06
Identities = 23/166 (13%), Positives = 53/166 (31%), Gaps = 9/166 (5%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ ++G GK+T + + + + + + +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEF------EKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 59
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+++ I+ V + + + + V + +PI+L NK D
Sbjct: 60 AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVD 118
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
+ AK + ++ K + +SAK + E W+ KL
Sbjct: 119 IKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLI 162
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.3 bits (103), Expect = 4e-06
Identities = 28/166 (16%), Positives = 49/166 (29%), Gaps = 9/166 (5%)
Query: 118 VAVLGKPNVGKSTLANQMI-GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
+ V+G VGKS++ + G + + +++L+DT G E
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 64
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
C++V + E V +P LV NK
Sbjct: 65 DAITKAYYRGAQ--------ACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKI 116
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
DL+ I + S K V ++ ++ K
Sbjct: 117 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 4e-06
Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 8/167 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEK 176
+ +LG+ VGKS+L + + + +C + ++DT G ++
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG--QE 66
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
+ H L M + ++A + D ++ R ++E + I L NK
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDI-----TNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283
DL + + + + SAK V +I I KLP
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 44.7 bits (105), Expect = 6e-06
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 114 KSGYVAVLGKPNVGKSTLANQM-------IGQKLSIVTNKPQTTRHRILGICSGPEYQMI 166
K + G VGKS+L N + + + + TT L
Sbjct: 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF---GGY 150
Query: 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198
+ DTPG +I+ ++ +K+ + C
Sbjct: 151 VVDTPGFANLEINDIEPEELKHYFKEFGDKQC 182
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 43.2 bits (101), Expect = 1e-05
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 189 VRSAGINADCIVVLVDACKAPE----RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244
+ N D ++++V K PE ID+ L V K++L ++V+NK DL ++
Sbjct: 4 TKPHVANVDQVILVV-TVKMPETSTYIIDKFL---VLAEKNELETVMVINKMDLYDEDDL 59
Query: 245 AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
K E E ++ + ++ SAK G G+E++++++
Sbjct: 60 RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL 93
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (102), Expect = 8e-06
Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 20/187 (10%)
Query: 108 ASHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMIL 167
A P V+G VGK+ L P H + + G + ++
Sbjct: 2 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLG 60
Query: 168 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL 227
E + + I V + + + E + ++ +
Sbjct: 61 LYDTAGQEDYDRLRPLSYPMT------DVFLICFSVVNPASFQNVKEEWVPELKEYAPNV 114
Query: 228 PILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEV-------------IPVSAKYGHGVEDI 274
P LL+ + DL + +L ++ E + SA G++ +
Sbjct: 115 PFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 174
Query: 275 RDWILTK 281
D +
Sbjct: 175 FDEAIIA 181
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 1e-05
Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 20/178 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V+G VGK+ L K P + + + G E + E
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE-- 62
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
D + + + + V + + E + E + H K P LLV + D
Sbjct: 63 --DYDRLRPLSYPQT--DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
Query: 238 LIKPGEIAKKL-------------EWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L +KL E + + + SA G++++ D +
Sbjct: 119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 43.0 bits (100), Expect = 2e-05
Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 28/193 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG-----------------ICSG 160
+ V+G + GK+TL + G S + + + LG +
Sbjct: 11 IGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTE 70
Query: 161 PEYQMILYDTPGIIEKKIHMLDSMMMKN-----VRSAGINADCIVVLVDACKAPERIDEI 215
P + D ++I +D+ + + A + I+V+ P+
Sbjct: 71 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 130
Query: 216 LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDE-----VIPVSAKYGHG 270
+G K +++V NK D++ E + ++FT +IPVSA +
Sbjct: 131 HFVALGIIGVK-NLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKIN 189
Query: 271 VEDIRDWILTKLP 283
++ + + I +
Sbjct: 190 IDSLIEGIEEYIK 202
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (98), Expect = 2e-05
Identities = 28/166 (16%), Positives = 68/166 (40%), Gaps = 8/166 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176
V +LG+ VGK++L + K + + G + ++DT G ++
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG--QE 63
Query: 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236
+ H L + ++ N +V + + +++ ++E +++ + +V NK
Sbjct: 64 RFHALGPIYYRD-----SNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 118
Query: 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
DL K ++ + + + SAK G+E++ + ++
Sbjct: 119 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 2e-05
Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 7/165 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
V +LG P VGKS LA + + + +
Sbjct: 4 VLLLGAPGVGKSALARI-------FGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 56
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + + G + + D + + ++ D +PI+LV NK D
Sbjct: 57 EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 116
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L++ E++ + I SA H V+ + + ++ ++
Sbjct: 117 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 21/166 (12%), Positives = 48/166 (28%), Gaps = 8/166 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+G VGKS L Q + + T + + + I
Sbjct: 8 LVVVGGGGVGKSALTIQ-------FIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ M+ +V V + E I + + + ++++ K
Sbjct: 61 AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120
Query: 238 LIKPGEIAKKLEWYEKFTDVD-EVIPVSAKYGHGVEDIRDWILTKL 282
+ + E + + + SAK V+ ++ +
Sbjct: 121 DLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 32/239 (13%), Positives = 61/239 (25%), Gaps = 82/239 (34%)
Query: 118 VAVLGKPNVGKSTLANQMI-----GQKLSIVTNKP------------------------- 147
V +G GK+TL + K++ V
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 148 -----------------QTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190
+ + + E +L DTPG +E + + +
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLME-- 120
Query: 191 SAGINADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247
+ +V + D + + D + + LNK DL+ E +
Sbjct: 121 --NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERH 178
Query: 248 LEWYEKFTDVDE----------------------------VIPVSAKYGHGVEDIRDWI 278
+++E + V+ +SAK G ED+
Sbjct: 179 RKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 237
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 13/168 (7%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ VLG GKS+L ++ + ++ + + + +I + K
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKF 67
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
D+++ + ++ +A R+ L G+ + L + LV +
Sbjct: 68 SGWADAVIFV----------FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 117
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIP---VSAKYGHGVEDIRDWILTKL 282
+ + A YG V+ + + K+
Sbjct: 118 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 27/190 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNK-------------------PQTTRHRILGIC 158
+ ++G + GK+TL + G + + P R+ +C
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 67
Query: 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE 218
++ I+ H M S A ++ + C R
Sbjct: 68 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCP---RPQTREHL 124
Query: 219 GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVD-----EVIPVSAKYGHGVED 273
+ I++ NK +L+ + + ++F + +IP+SA +G ++
Sbjct: 125 MALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDV 184
Query: 274 IRDWILTKLP 283
+ I +P
Sbjct: 185 LVKAIEDFIP 194
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 40.0 bits (93), Expect = 2e-04
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 19/176 (10%)
Query: 118 VAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDT 170
V +G + GK+TL + G K R GI +
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65
Query: 171 PGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPI 229
+ +KN+ + D +++V A P + E L + +
Sbjct: 66 RHYAHTDCPG-HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLL--LARQIGVEHV 122
Query: 230 LLVLNKKDLIKPGEIAK--KLEWYEKFTDVDE------VIPVSAKYGHGVEDIRDW 277
++ +NK D ++ E+ + +LE E T+ +I SA D
Sbjct: 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELG 178
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 2e-04
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 11/168 (6%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ VLG VGKS L Q V + + ++ I
Sbjct: 6 LVVLGSGGVGKSALTVQF-------VQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDT 58
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVG-DHKDKLPILLVLNKK 236
M+++ +V + A + ++ E+ + + +P++LV NK
Sbjct: 59 AGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118
Query: 237 DLIKPGEIAK--KLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
DL + K ++ + + SAK V +I ++ ++
Sbjct: 119 DLEDERVVGKEQGQNLARQWCNC-AFLESSAKSKINVNEIFYDLVRQI 165
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 5e-04
Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 20/174 (11%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ ++G GK+ L + V P + + I + + +E
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVY-VPTVFENYVADIEVDGKQVELALWDTAGLEDY 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + + E I E V +PI+LV NKKD
Sbjct: 64 DRLRPLSYPDTDVILMCFSIDS------PDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 117
Query: 238 LIKPGEIAKKLEWYEKFTDVDE-------------VIPVSAKYGHGVEDIRDWI 278
L ++L ++ E + SAK GV ++ +
Sbjct: 118 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 6e-04
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 9/172 (5%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ LG VGK+T + K + T Q + +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFN--PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 178 IHMLDSMMMKNVRSAG----INADCIVVLVDACKAPERIDEILEEGVGDHK---DKLPIL 230
+ + D+ + RS +A +++ D ++ + I+
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 231 LVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282
L+ NK DL E+ ++ SA G VE + +L +
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Score = 38.6 bits (89), Expect = 6e-04
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 7/145 (4%)
Query: 48 LVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDY 107
LVL E Q + + ++ D E + +S D + +
Sbjct: 34 LVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 93
Query: 108 ASHPNHKSGYVAVLGKPNVGKSTLANQMIG---QKLSIVTNKPQTTRHRILGICSGPEYQ 164
G+ VGKS+L N + + + ++ +H +
Sbjct: 94 HFQDKT----TVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG 149
Query: 165 MILYDTPGIIEKKIHMLDSMMMKNV 189
++ DTPG + ++ +
Sbjct: 150 GLVADTPGFSSLEFTDIEEEELGYT 174
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.7 bits (89), Expect = 7e-04
Identities = 35/225 (15%), Positives = 61/225 (27%), Gaps = 35/225 (15%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---------------- 161
++G PNVGKST + L N P T + P
Sbjct: 13 TGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSR 72
Query: 162 -EYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE 218
+ ++D G+ + L + + +VR D I +V A D +
Sbjct: 73 VPAFLTVFDIAGLTKGASTGVGLGNAFLSHVR----AVDAIYQVVRAFD-----DAEIIH 123
Query: 219 GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278
GD + +++++ + + K LE K T I
Sbjct: 124 VEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVY 183
Query: 279 LTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYAC 323
D + E +++ V Y
Sbjct: 184 QYLTETKQPIRKGDWSNREVEII-------NSLYLLTAKPVIYLV 221
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 8e-04
Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 6/164 (3%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+A+LG +VGKS+L Q + + + L +G EY + L DT G E
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS 66
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
I + G V + + + + I L + VG + + ++
Sbjct: 67 IFPQTYSID----INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281
+ + + E + + SAK D+ I+ +
Sbjct: 123 MERVISYEEGKALAESWN--AAFLESSAKENQTAVDVFRRIILE 164
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.9 bits (84), Expect = 0.001
Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 7/166 (4%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+G VGKS L Q + T + + Q + D ++
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFV---PDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 63
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237
+ + IL ++ P++LV NK D
Sbjct: 64 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRV---KDRESFPMILVANKVD 120
Query: 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG-HGVEDIRDWILTKL 282
L+ ++ + I SAK V+ ++ +
Sbjct: 121 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.5 bits (86), Expect = 0.001
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 21/148 (14%)
Query: 142 IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVV 201
+ I G +++ G E V + + +VV
Sbjct: 108 DAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVV 167
Query: 202 LVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDE 259
+++ P + +E +E V +++ Y TDV +
Sbjct: 168 VINKMDEPSVQWSEERYKECVDKLSM------------------FLRRVAGYNSKTDV-K 208
Query: 260 VIPVSAKYGHGVEDIRDWILTKLPLGPA 287
+PVSA G V+D D + GP+
Sbjct: 209 YMPVSAYTGQNVKDRVDSSVCPWYQGPS 236
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 36.9 bits (85), Expect = 0.002
Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 55/205 (26%)
Query: 118 VAVLGKPNVGKSTLANQMIGQ----------KLSIVTNKPQTTRHRILGI------CSGP 161
V +G + GK+TL + K +K R R + I
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65
Query: 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-----ERIDEIL 216
+ D PG H +KN+ + D +++V A P E I
Sbjct: 66 KRHYSHVDCPG------HA---DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 116
Query: 217 EEGVGDHKDKLPILLVLNKKDLIKPGEI-----------AKKLEWYEKFTDV-------- 257
+ GV I++ +NK D++ E+ + E+ V
Sbjct: 117 QVGVP------YIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA 170
Query: 258 DEVIPVSAKYGHGVEDIRDWILTKL 282
E + + K G + D I L
Sbjct: 171 LEQMHRNPKTRRGENEWVDKIWELL 195
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.2 bits (82), Expect = 0.002
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 14/164 (8%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+G NVGK+ L + + +G+ I + I
Sbjct: 5 IIVIGDSNVGKTCLTYR-------FCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 57
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLN 234
+ V+ N +V + D I E + +P +LV N
Sbjct: 58 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 117
Query: 235 KKDLIKPGEIAKKLEWYEKFTDVDEV--IPVSAKYGHGVEDIRD 276
K DL ++ + +KF D + SAK + + +
Sbjct: 118 KCDLRSAIQVPT--DLAQKFADTHSMPLFETSAKNPNDNDHVEA 159
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Score = 35.9 bits (81), Expect = 0.002
Identities = 14/82 (17%), Positives = 25/82 (30%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ +G P GKST A + I + R I+ EY+ + +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 178 IHMLDSMMMKNVRSAGINADCI 199
S++ G+
Sbjct: 65 FDTAKSILYGGDSVKGVIISDT 86
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 35.8 bits (81), Expect = 0.003
Identities = 23/173 (13%), Positives = 46/173 (26%), Gaps = 25/173 (14%)
Query: 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177
+ V+G GK+ L + T + Q I
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFP---ENYVPTVFENYTASFEIDTQRIELSLW------ 55
Query: 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNK 235
+ ++D +++ D + + + + + + + +LLV K
Sbjct: 56 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK 115
Query: 236 KDLIKPGEIAKKLEWYEKFTDVDE-------------VIPVSAKYGH-GVEDI 274
DL +L + + + I SA V DI
Sbjct: 116 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 168
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 348 | |||
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.97 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.93 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.91 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.91 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.91 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.91 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.9 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.9 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.9 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.9 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.89 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.88 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.88 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.87 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.87 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.87 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.87 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.87 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.87 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.86 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.86 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.86 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.85 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.85 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.84 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.84 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.84 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.84 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.84 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.83 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.83 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.83 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.83 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.83 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.82 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.82 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.82 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.82 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.81 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.8 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.8 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.8 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.79 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.77 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.77 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.76 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.74 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.73 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.72 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.7 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.65 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.64 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.64 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.63 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.63 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.61 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.58 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.55 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.54 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.53 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.45 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.41 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.4 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.39 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.27 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.26 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.21 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.17 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.03 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.46 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.43 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.4 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.4 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.3 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.25 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.14 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.05 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.02 | |
| d1egaa2 | 113 | GTPase Era C-terminal domain {Escherichia coli [Ta | 97.98 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.83 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.66 | |
| d1wf3a2 | 118 | GTPase Era C-terminal domain {Thermus thermophilus | 97.63 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.59 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.54 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.29 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.79 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.65 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.4 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.4 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.38 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.22 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.13 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.11 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.02 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 95.95 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.95 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.95 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 95.9 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.9 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.9 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 95.89 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.86 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 95.84 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 95.81 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 95.81 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 95.75 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.72 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 95.72 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 95.7 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.69 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 95.61 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 95.6 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 95.58 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 95.57 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.55 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.5 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.5 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.48 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.48 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.47 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 95.46 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 95.41 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.39 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.37 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 95.36 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.35 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.35 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.33 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 95.3 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 95.27 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.27 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.26 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.26 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.26 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.24 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.2 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.19 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.14 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 95.03 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.02 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.96 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.94 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.82 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.77 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.73 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.5 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.4 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.36 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.35 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.33 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.33 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.18 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.14 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.02 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.01 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.81 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.6 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.57 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.57 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.46 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.36 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 93.27 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.05 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.97 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.84 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.75 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.65 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 92.47 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.33 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.2 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.06 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 91.88 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.78 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.66 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.31 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.01 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.78 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.61 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.48 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.47 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.46 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 90.44 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.37 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.35 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.31 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.23 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 90.17 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 90.09 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.92 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 89.88 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.72 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 89.57 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.45 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.17 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.71 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.6 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.52 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 87.93 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 87.83 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 87.52 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 87.44 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.91 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.7 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 86.58 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.87 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 85.48 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 85.22 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 85.02 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 84.51 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 84.41 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 84.01 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 82.97 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 82.93 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 82.44 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 81.88 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 81.82 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 80.04 |
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=9.2e-30 Score=215.68 Aligned_cols=175 Identities=35% Similarity=0.547 Sum_probs=147.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+.+.|+++|.+|||||||+|+|++.+...++..+++|...........+..+.++||||+... .......+...+..++
T Consensus 4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~-~~~~~~~~~~~~~~~~ 82 (178)
T d1wf3a1 4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP-MDALGEFMDQEVYEAL 82 (178)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC-CSHHHHHHHHHHHHHT
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeeccccccccc-ccccchhccccccccc
Confidence 456899999999999999999999988778899999999888888888899999999997542 2334445566677889
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
..||++++|+|++++....+.++...++....++|+++|+||+|+....+ .....+....+...++++||++|.|+++
T Consensus 83 ~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~~~gi~~ 160 (178)
T d1wf3a1 83 ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAMKAYHELLPEAEPRMLSALDERQVAE 160 (178)
T ss_dssp SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--HHHHHHHHTSTTSEEEECCTTCHHHHHH
T ss_pred ccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCHH--HHHHHHHhhcccCceEEEecCCCCCHHH
Confidence 99999999999999888877888887776657899999999999976443 3345556666667899999999999999
Q ss_pred HHHHHHHhCCCCCCCCCC
Q 018949 274 IRDWILTKLPLGPAYYPK 291 (348)
Q Consensus 274 L~~~i~~~l~~~~~~~~~ 291 (348)
|+++|.+.++++|++||.
T Consensus 161 L~~~i~~~lpe~p~~~p~ 178 (178)
T d1wf3a1 161 LKADLLALMPEGPFFYPE 178 (178)
T ss_dssp HHHHHHTTCCBCCCSSCT
T ss_pred HHHHHHHhCCCCCCCCCC
Confidence 999999999999999884
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=3.8e-26 Score=191.83 Aligned_cols=164 Identities=26% Similarity=0.314 Sum_probs=123.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|||||||+|+|+|.+...++..+++|.......+......+.++||||+...............+...+..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 69999999999999999999998887889999999988888888889999999999877666656666667777888999
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++++|++.+.......+...++. .++|+|+|+||+|+....+.. ....+... +..+++++||++|.|+++|++
T Consensus 82 d~i~~~~~~~~~~~~~~~~~~~~l~~--~~~pviiv~NK~Dl~~~~~~~-~~~~~~~~-~~~~~i~iSAk~g~gid~L~~ 157 (171)
T d1mkya1 82 DLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFERE-VKPELYSL-GFGEPIPVSAEHNINLDTMLE 157 (171)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHHHH-THHHHGGG-SSCSCEECBTTTTBSHHHHHH
T ss_pred cEEEEeeccccccccccccccccccc--ccccccccchhhhhhhhhhhH-HHHHHHhc-CCCCeEEEecCCCCCHHHHHH
Confidence 99999999998887777777777776 679999999999997544322 22233332 344679999999999999999
Q ss_pred HHHHhCCC
Q 018949 277 WILTKLPL 284 (348)
Q Consensus 277 ~i~~~l~~ 284 (348)
+|.+.+++
T Consensus 158 ~i~~~l~e 165 (171)
T d1mkya1 158 TIIKKLEE 165 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHhCCC
Confidence 99988754
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=2.3e-25 Score=184.60 Aligned_cols=158 Identities=25% Similarity=0.342 Sum_probs=125.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||+|+|+|.+...++..+++|+......+...+..+.+|||||+........+......+...+..+
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~a 81 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKA 81 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999998887889999999888888888899999999999755433333333334556667899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|++++.......+.... ...++++++||+|+.+..........+ ....+++++||++|+|+++|++
T Consensus 82 d~ii~v~d~~~~~~~~~~~~~~~~----~~~~~i~~~~k~d~~~~~~~~~~~~~~---~~~~~~~~vSA~~g~gi~~L~~ 154 (160)
T d1xzpa2 82 DIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKL---GTDRHMVKISALKGEGLEKLEE 154 (160)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH---TCSTTEEEEEGGGTCCHHHHHH
T ss_pred CEEEEEEeCCCCcchhhhhhhhhc----ccccceeeeeeccccchhhhHHHHHHh---CCCCcEEEEECCCCCCHHHHHH
Confidence 999999999988866665555443 457899999999998766554444433 3345799999999999999999
Q ss_pred HHHHh
Q 018949 277 WILTK 281 (348)
Q Consensus 277 ~i~~~ 281 (348)
+|.+.
T Consensus 155 ~I~ke 159 (160)
T d1xzpa2 155 SIYRE 159 (160)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98763
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.4e-24 Score=179.97 Aligned_cols=159 Identities=26% Similarity=0.339 Sum_probs=122.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.+|||||||+|+|++.+...++..+++++......+...+..+.++||||+.+.. ..........+..++..
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS-DEVERIGIERAWQEIEQ 80 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS-SHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeecccccccccc-ccchhHHHHHHHHHHHh
Confidence 37999999999999999999999988788899999998888888889999999999986543 33334445566677889
Q ss_pred ccEEEEEecCCCCCc-hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 196 ADCIVVLVDACKAPE-RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 196 ad~iv~VvD~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
+|++++++|...... .....+...++....++|+++|+||+|+...... + ......+++++||++|.|+++|
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~------~-~~~~~~~~~~iSAk~~~gi~~L 153 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------M-SEVNGHALIRLSARTGEGVDVL 153 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------E-EEETTEEEEECCTTTCTTHHHH
T ss_pred ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH------H-HHhCCCcEEEEECCCCCCHHHH
Confidence 999999999987653 2223333344443467999999999998653211 1 1123458999999999999999
Q ss_pred HHHHHHhC
Q 018949 275 RDWILTKL 282 (348)
Q Consensus 275 ~~~i~~~l 282 (348)
+++|.+.+
T Consensus 154 ~~~l~~~l 161 (161)
T d2gj8a1 154 RNHLKQSM 161 (161)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhC
Confidence 99998754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.91 E-value=4.9e-24 Score=180.40 Aligned_cols=161 Identities=24% Similarity=0.338 Sum_probs=113.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE------eEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH------RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM 186 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~------~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~ 186 (348)
.+..+|+++|++|+|||||+|+|++.......+...+++. .....+...+..+.++|+||+.+ +.
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~---------~~ 73 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD---------LI 73 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH---------HH
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccc---------cc
Confidence 3556899999999999999999998664433333322222 22223445678899999999432 33
Q ss_pred HHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH---HHH-Hhc--CCCCeE
Q 018949 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL---EWY-EKF--TDVDEV 260 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~-~~~--~~~~~i 260 (348)
..+...+..+|++++|+|++.+...+...+...+.. .++|+++|+||+|+...++..... ..+ ... ....++
T Consensus 74 ~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~--~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 151 (179)
T d1wb1a4 74 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 151 (179)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred cchhhhhhhccccccccccccccchhhhhhhhhhhh--cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeE
Confidence 455667889999999999999988877777777776 789999999999999876543222 222 211 123489
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+++||++|+|+++|++.|.+.+++
T Consensus 152 v~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 152 IPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEccCCcCHHHHHHHHHhcCCc
Confidence 999999999999999999987754
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.7e-23 Score=174.97 Aligned_cols=175 Identities=31% Similarity=0.571 Sum_probs=135.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+.|+|+|.+|||||||+|+|++.+...++..+.+++.........+...+..+|+||.....................
T Consensus 4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (179)
T d1egaa1 4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 83 (179)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccch
Confidence 45689999999999999999999999888888888888888788777888889999999765443333333333333345
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh-hhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP-GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
..+++++++.|............ ..+.. ...|.++|+||+|.... ..+......+....+..+++++||++|.|++
T Consensus 84 ~~~~~~l~~~d~~~~~~~~~~~~-~~l~~--~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 160 (179)
T d1egaa1 84 GDVELVIFVVEGTRWTPDDEMVL-NKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD 160 (179)
T ss_dssp CCEEEEEEEEETTCCCHHHHHHH-HHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred hhcceeEEEEecCccchhHHHHH-HHhhh--ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHH
Confidence 67899999999876554444333 33334 56889999999998764 3445555666666777799999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCC
Q 018949 273 DIRDWILTKLPLGPAYYPK 291 (348)
Q Consensus 273 eL~~~i~~~l~~~~~~~~~ 291 (348)
+|+++|.+.+++.++.||.
T Consensus 161 ~L~~~i~~~lpe~~~~yp~ 179 (179)
T d1egaa1 161 TIAAIVRKHLPEATHHFPE 179 (179)
T ss_dssp HHHHHHHTTCCBCCCSSCT
T ss_pred HHHHHHHHhCCCCCCCCCC
Confidence 9999999999999988874
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=4.6e-24 Score=180.43 Aligned_cols=166 Identities=25% Similarity=0.284 Sum_probs=117.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
.|+|+|.+|||||||+|+|++.+.........++...........+..+.+|||||+...... .......+...+..+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~--~~~~~~~~l~~~~~~ 80 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE--GKGLGLEFLRHIART 80 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG--SCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchH--HHHHHHHHHHHHHhh
Confidence 599999999999999999999887654444444444444445556778999999997542211 111223455667899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcc---cccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVG---DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
+++++++|...........+...+. ....++|+++|+||+|+..........+.+... ..+++++||++|+|+++
T Consensus 81 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~--~~~~~~iSA~tg~gid~ 158 (180)
T d1udxa2 81 RVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE--GLAVLPVSALTGAGLPA 158 (180)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEECCTTTCTTHHH
T ss_pred hhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhc--CCeEEEEEcCCCCCHHH
Confidence 9999999987654333222222221 111468999999999999887776665655543 34899999999999999
Q ss_pred HHHHHHHhCCCCC
Q 018949 274 IRDWILTKLPLGP 286 (348)
Q Consensus 274 L~~~i~~~l~~~~ 286 (348)
|++.|.+.++..+
T Consensus 159 L~~~i~~~l~~~~ 171 (180)
T d1udxa2 159 LKEALHALVRSTP 171 (180)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhcC
Confidence 9999988886543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=8.4e-24 Score=179.47 Aligned_cols=167 Identities=25% Similarity=0.313 Sum_probs=121.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh---hhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH---MLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~l~~~~~~~~~ 190 (348)
...+|+|+|++|||||||+|+|++.+...++..+++|.......+..++..+.++||||+...... .........+.
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 86 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 86 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHH
Confidence 346999999999999999999999998888999999988888888888899999999997432110 00001123344
Q ss_pred hhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh--HHHHHHHHHh---cCCCCeEEEecC
Q 018949 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSA 265 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~---~~~~~~i~~vSA 265 (348)
..+..+|++++|+|+..+.......+...+.. .+.|+|+|+||+|+....+ ..+....+.. .....+++++||
T Consensus 87 ~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~--~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa 164 (186)
T d1mkya2 87 DSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSA 164 (186)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred HHHhcCCEEEEeecccccchhhHHHHHHHHHH--cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeC
Confidence 55688999999999999888888777777776 7899999999999875432 2333333332 334568999999
Q ss_pred CCCCCHHHHHHHHHHhC
Q 018949 266 KYGHGVEDIRDWILTKL 282 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l 282 (348)
++|.|+++|++.|.+.+
T Consensus 165 ~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 165 DKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999997654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=2.2e-23 Score=176.38 Aligned_cols=160 Identities=26% Similarity=0.330 Sum_probs=113.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh------hhhhhHHHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK------KIHMLDSMMMKNVR 190 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~------~~~~l~~~~~~~~~ 190 (348)
.|+++|.||||||||+|+|++.+.. ++.++++|+...... .. .+.++||||+... ....+...+...+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~--~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 76 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 76 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeecccccc--cc--cceecccCCceeccccccccccccchhhhhhhh
Confidence 6999999999999999999998875 788999998765432 22 3788999997321 12233444555566
Q ss_pred hhccCccEEEEEecCCCC-----------CchHHHHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHH-HHHHhcC--
Q 018949 191 SAGINADCIVVLVDACKA-----------PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKL-EWYEKFT-- 255 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~-----------~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~-~~~~~~~-- 255 (348)
..++.+|++++|+|++.. ....+..+.+.++. .++|+++|+||+|+....+ ..... ..+....
T Consensus 77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
T d2cxxa1 77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE 154 (184)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGG
T ss_pred hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHHHHHHHHHHHhcccccc
Confidence 778899999999998642 23344455555555 6899999999999875432 22211 1111111
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
....++++||++|.|+++|+++|.+.++
T Consensus 155 ~~~~~~~vSA~~g~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 155 IDKVFIPISAKFGDNIERLKNRIFEVIR 182 (184)
T ss_dssp HHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence 1125799999999999999999988764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=1.3e-22 Score=173.52 Aligned_cols=167 Identities=23% Similarity=0.286 Sum_probs=117.4
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCce-eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh----hhhHHHH
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMM 185 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~l~~~~ 185 (348)
|....++|+|+|++|||||||+|+|+|.+. ..++..+++|......... ..+.++|++|...... ......+
T Consensus 19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~ 95 (195)
T d1svia_ 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN---DELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET---TTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc---ccceEEEEEeeccccccccccchhhhH
Confidence 334455899999999999999999998763 4456677777665554443 3466788887533211 1122233
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEE
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIP 262 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~ 262 (348)
..........+|++++|+|++.+.......+.+.++. .++|+++|+||+|+.+..+..+....+.. .....++++
T Consensus 96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (195)
T d1svia_ 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred Hhhhhccccchhhhhhhhhcccccccccccccccccc--ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence 4556677788999999999998888888888888887 78999999999999877666555444433 335568999
Q ss_pred ecCCCCCCHHHHHHHHHHhC
Q 018949 263 VSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l 282 (348)
+||++|.|+++|+++|.+.+
T Consensus 174 ~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 174 FSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998876
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.89 E-value=1e-22 Score=171.06 Aligned_cols=159 Identities=23% Similarity=0.329 Sum_probs=113.8
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+..+|+++|.+|||||||+|++.+.++..+.+..+.+. ..+..++..+.+||+||. ..+.. .+.
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~----~~i~~~~~~~~i~d~~g~--~~~~~-------~~~ 78 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI----KSVQSQGFKLNVWDIGGQ--RKIRP-------YWR 78 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE----EEEEETTEEEEEEECSSC--GGGHH-------HHH
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeE----EEeccCCeeEeEeecccc--ccchh-------HHH
Confidence 44567799999999999999999999988865555554433 234566789999999994 33322 234
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEec
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVS 264 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vS 264 (348)
.++..+|++++|+|+++.. .....++....... ..++|+++|+||+|+............+. ......++++||
T Consensus 79 ~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T d1fzqa_ 79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCS 158 (176)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5578999999999998754 23333444444332 25789999999999986554433333322 122345789999
Q ss_pred CCCCCCHHHHHHHHHHhC
Q 018949 265 AKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l 282 (348)
|++|+|+++++++|.+.+
T Consensus 159 A~tg~gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 159 ALTGEGVQDGMNWVCKNV 176 (176)
T ss_dssp TTTCTTHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHhcC
Confidence 999999999999998754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.88 E-value=1.3e-22 Score=168.81 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=109.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..||+++|.+|||||||+++|.+..+... ..|.......+..++..+.+|||||. ..+. .....++.
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~--~~~~-------~~~~~~~~ 68 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDVDTI----SPTLGFNIKTLEHRGFKLNIWDVGGQ--KSLR-------SYWRNYFE 68 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCSSC----CCCSSEEEEEEEETTEEEEEEEECCS--HHHH-------TTGGGGCT
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCCCcc----cceEeeeeeeccccccceeeeecCcc--hhhh-------hHHHhhhh
Confidence 45899999999999999999998875422 23333344456678899999999994 3222 22345578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g 268 (348)
.++++++|+|.++.. ......+...+.. ...+.|+++|+||+|+.+..........+.. .....++++|||++|
T Consensus 69 ~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 148 (165)
T d1ksha_ 69 STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTG 148 (165)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred hhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCC
Confidence 999999999998754 2333444444332 2367999999999999765444433333221 122347899999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
+|+++++++|.+.+
T Consensus 149 ~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 149 EDLLPGIDWLLDDI 162 (165)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.3e-22 Score=168.76 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=110.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE--eEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
||+++|.+|||||||++++.+.++... ..+..+.. ..........+.+.+|||+|. ..+..+. ..++.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~--~~~~~~~-------~~~~~ 71 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNT-YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ--ERFRSLI-------PSYIR 71 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSS-CCCCCSEEEEEEEEECSSCEEEEEEEEECCS--GGGGGGH-------HHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCc-cccceeeeccceeeccCCCceeeeecccCCc--chhccch-------HHHhh
Confidence 799999999999999999998776532 22332223 233333445678999999995 3344332 33478
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. .....++....+....+.|+++|+||+|+...... .+....+....+ .++++|||++|.|+
T Consensus 72 ~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~SAk~g~~v 150 (164)
T d1yzqa1 72 DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-VMFIETSAKAGYNV 150 (164)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred ccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcC-CEEEEecCCCCcCH
Confidence 999999999998754 44455555544433467999999999998753322 223333444444 37999999999999
Q ss_pred HHHHHHHHHhCCC
Q 018949 272 EDIRDWILTKLPL 284 (348)
Q Consensus 272 ~eL~~~i~~~l~~ 284 (348)
+++|+.|.+.+++
T Consensus 151 ~e~f~~i~~~l~g 163 (164)
T d1yzqa1 151 KQLFRRVAAALPG 163 (164)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhCC
Confidence 9999999999874
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=5.5e-23 Score=174.36 Aligned_cols=166 Identities=24% Similarity=0.268 Sum_probs=111.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.|+|+|++|||||||+|+|++.+.. +...+++|......... .++..+.+|||||+....... ......+...+..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~-~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~--~~~~~~~l~~~~~ 79 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG--VGLGHQFLRHIER 79 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT--TTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCc-eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHH--HHHHHHHHHHHHH
Confidence 6999999999999999999998876 45566666555554444 345679999999975422211 1122344455678
Q ss_pred ccEEEEEecCCCCC--chHHH--H---HHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 196 ADCIVVLVDACKAP--ERIDE--I---LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~--~---~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++.++++++..... ..... . ..........++|+++|+||+|+....+..+ ..........+++++||++|
T Consensus 80 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~--~~~~~~~~~~~v~~iSA~~g 157 (185)
T d1lnza2 80 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLE--AFKEKLTDDYPVFPISAVTR 157 (185)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHH--HHHHHCCSCCCBCCCSSCCS
T ss_pred hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHH--HHHHHhccCCcEEEEECCCC
Confidence 89999988876433 11111 1 1111111125689999999999987654322 12222334458899999999
Q ss_pred CCHHHHHHHHHHhCCCCCC
Q 018949 269 HGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~ 287 (348)
.|+++|++.|.+.++..+.
T Consensus 158 ~Gi~~L~~~i~~~L~~~p~ 176 (185)
T d1lnza2 158 EGLRELLFEVANQLENTPE 176 (185)
T ss_dssp STTHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHhhhhCCC
Confidence 9999999999999876553
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.5e-22 Score=170.59 Aligned_cols=155 Identities=20% Similarity=0.185 Sum_probs=110.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
||+++|.+|||||||++++.+..+.. .+.+|...... .........+.+|||+|. ..+..+ ...++.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~--~~~~~~-------~~~~~~ 72 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGL--EDYDRL-------RPLSYP 72 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCS--SCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGTTT-------GGGGCT
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCC--CcCCceeeeccccccccccceeeeccccCcc--chhccc-------chhhcc
Confidence 89999999999999999999887642 22223222222 233445668999999994 444433 234588
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~~ 259 (348)
.+|++++|+|.++.. .....++...+.....+.|+++|+||+|+....... +....+....+..+
T Consensus 73 ~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~ 152 (177)
T d1kmqa_ 73 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFG 152 (177)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred cchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcE
Confidence 999999999998754 334455555555555789999999999997643321 12233444455568
Q ss_pred EEEecCCCCCCHHHHHHHHHHhC
Q 018949 260 VIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
+++|||++|.|++++|+.+.+.+
T Consensus 153 ~~E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 153 YMECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999988754
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.5e-22 Score=172.04 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=112.5
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMK 187 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~ 187 (348)
.|+....||+++|.+|||||||+++++...+. ..+..|........+ ....+.+.+|||+|. +.+..+.
T Consensus 4 ~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~--e~~~~~~----- 74 (185)
T d2atxa1 4 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ--EDYDRLR----- 74 (185)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCS--SSSTTTG-----
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCceeeeeeEEEeeCCceEEeeccccccc--chhhhhh-----
Confidence 34445569999999999999999999987754 233334333333332 334577899999994 4444332
Q ss_pred HHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHH
Q 018949 188 NVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYE 252 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~ 252 (348)
..++..+|++++|+|+++.. +....++....+....+.|+++|+||+|+.+..... +....+.
T Consensus 75 --~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a 152 (185)
T d2atxa1 75 --PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA 152 (185)
T ss_dssp --GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred --hhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHH
Confidence 24588999999999998754 333445555555555789999999999997533211 1223333
Q ss_pred hcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 253 KFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 253 ~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
...+..++++|||++|.||+++|+.+.+.+
T Consensus 153 ~~~~~~~~~E~SAk~~~gv~e~F~~li~~i 182 (185)
T d2atxa1 153 KEIGACCYVECSALTQKGLKTVFDEAIIAI 182 (185)
T ss_dssp HHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence 344556899999999999999999988765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.7e-22 Score=171.22 Aligned_cols=161 Identities=18% Similarity=0.146 Sum_probs=112.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..||+++|.+|||||||+++|++..+.. .+..|...... ...+.....+.+||++| +..+..+.. .
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~f~~--~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g--~~~~~~~~~-------~ 72 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPG--EYIPTVFDNYSANVMVDGKPVNLGLWDTAG--QEDYDRLRP-------L 72 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCS--SCCCCSCCEEEEEEEETTEEEEEEEECCCC--SGGGTTTGG-------G
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCCCCc--ccccceeeceeeeeeccCcceEEEeecccc--cccchhhhh-------h
Confidence 55699999999999999999999877542 23333333222 23345567789999999 444444432 3
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-------------HHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (348)
++..+|++++|+|+++.. +....++....+....+.|+++|+||+|+........ ....+.+..+
T Consensus 73 ~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 152 (183)
T d1mh1a_ 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (183)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred cccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcC
Confidence 478999999999998654 3334445555555457899999999999865433211 1222333445
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
..++++|||++|.||+++|+.|.+.+...
T Consensus 153 ~~~~~E~SAk~~~~V~e~F~~l~~~il~p 181 (183)
T d1mh1a_ 153 AVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (183)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred CceEEEcCCCCCcCHHHHHHHHHHHHcCC
Confidence 56899999999999999999999876543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=1.1e-22 Score=170.17 Aligned_cols=157 Identities=13% Similarity=0.148 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.||+++|.+|||||||++++.+..+... .+..+.+..............+.+||||| ++.+..+ ...+++
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G--~e~~~~~-------~~~~~~ 76 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG--QERYRTI-------TTAYYR 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECC--SGGGHHH-------HHTTTT
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCC--chhhHHH-------HHHHHh
Confidence 3899999999999999999998775432 22333334333334444457899999999 4343333 334589
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++|+|+|.++.. .....++...........|+++|+||+|+.....+ .+....+....+. ++++|||++|.|+
T Consensus 77 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g~gv 155 (169)
T d3raba_ 77 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEASAKDNINV 155 (169)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTTTBSH
T ss_pred cCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCC-EEEEecCCCCcCH
Confidence 999999999998753 33334443333333367899999999998754322 1122233333343 8999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++|+.|.+.+
T Consensus 156 ~e~f~~l~~~i 166 (169)
T d3raba_ 156 KQTFERLVDVI 166 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.6e-22 Score=169.13 Aligned_cols=155 Identities=24% Similarity=0.273 Sum_probs=97.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
||+++|.+|||||||++++.+.......++.+.+ ......++.....+.+||||| +..+..+ ...+++.+
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~l~i~D~~g--~e~~~~~-------~~~~~~~~ 72 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHT-YDRSIVVDGEEASLMVYDIWE--QDGGRWL-------PGHCMAMG 72 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC---------CEE-EEEEEEETTEEEEEEEEECC---------C-------HHHHHTSC
T ss_pred EEEEECCCCcCHHHHHHHHhCCccCCcCCeeeee-ecceeeccccccceeeeeccc--cccccee-------cccchhhh
Confidence 7999999999999999999987764322222211 112223445567899999999 4444433 23457899
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
|++++|+|.++.. .....++....... ....|+++|+||+|+....++ ......+....+ .++++|||++|.|++
T Consensus 73 d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~~~~v~ 151 (168)
T d2gjsa1 73 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNVQ 151 (168)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-SEEEECBTTTTBSHH
T ss_pred hhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcC-CEEEEEeCCCCcCHH
Confidence 9999999998754 33334443332221 256899999999998754322 122233333334 389999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
++|..|.+.+
T Consensus 152 ~~f~~l~~~i 161 (168)
T d2gjsa1 152 ALFEGVVRQI 161 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=2.4e-22 Score=167.69 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=109.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
|..||+++|.+|||||||++++.+.++.... ++.+.+..............+.+|||+| +..+..+.. .+
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g--~~~~~~~~~-------~~ 73 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG--LERFRALAP-------MY 73 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECC--SGGGGGGTH-------HH
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCC--chhhhHHHH-------HH
Confidence 5568999999999999999999988764211 1122222222222333445678999999 444444433 33
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|.++.. .....++.........+.|+++|+||+|+.....+ .+....+....+ +++++|||++|.
T Consensus 74 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SAk~~~ 152 (167)
T d1z0ja1 74 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAI 152 (167)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred HhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcC-CEEEEEecCCCC
Confidence 68999999999997644 33333443333333478999999999999653222 223344444444 489999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
||+++|..|.+.++
T Consensus 153 nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 153 NINELFIEISRRIP 166 (167)
T ss_dssp SHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999999885
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.3e-22 Score=168.41 Aligned_cols=156 Identities=20% Similarity=0.251 Sum_probs=107.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.||+++|.+|||||||++++.+..+.. ...+..+.......+ ....+.+.+||||| ++.+..+ ...++
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G--~e~~~~~-------~~~~~ 75 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAG--QERFRSI-------TQSYY 75 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECC--SGGGHHH-------HGGGS
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCC-cccccccceEEEEEEEECCEEEEEEEEECCC--chhhHHH-------HHHHH
Confidence 389999999999999999999877642 333334444333333 34456789999999 4443333 33558
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+.+|++++|+|.++.. .....++....+......|+++|+||+|+.....+ ......+....+. ++++|||++|.|
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~SAktg~g 154 (171)
T d2ew1a1 76 RSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLETSAKESDN 154 (171)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEECCTTTCTT
T ss_pred hccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCC-EEEEEccCCCCC
Confidence 9999999999997654 33444444444443367899999999998754322 1223333333343 789999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
|+++|..|.+.+
T Consensus 155 V~e~f~~l~~~l 166 (171)
T d2ew1a1 155 VEKLFLDLACRL 166 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877653
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.1e-22 Score=169.19 Aligned_cols=161 Identities=19% Similarity=0.272 Sum_probs=110.0
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
|+.+..||+++|.+|||||||++++++.++. .....+........+. ...+.+.+|||+|. ..+..+..
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~~~----- 72 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQ--EEFGAMRE----- 72 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TTTSCCHH-----
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCC--cccccccccceeeEeccCCeeeeeeccccccc--cccccccc-----
Confidence 3456679999999999999999999987764 3334444433333333 34567889999994 34444433
Q ss_pred HHhhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEec
Q 018949 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vS 264 (348)
.++..+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+...... ......+....+ .++++||
T Consensus 73 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~S 149 (173)
T d2fn4a1 73 --QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEAS 149 (173)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECB
T ss_pred --hhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcC-CEEEEEe
Confidence 3367899999999998654 33344444333321 267899999999998653221 222333444444 3899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 018949 265 AKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (348)
|++|.|++++|+.|.+.+.
T Consensus 150 ak~g~gv~e~f~~l~~~i~ 168 (173)
T d2fn4a1 150 AKLRLNVDEAFEQLVRAVR 168 (173)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998663
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.87 E-value=1.3e-21 Score=162.73 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=109.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|++|||||||+++|.+.++.. ... .|.......++.++..+.+||+|| +..+... +..++..
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~~--~~~-~T~~~~~~~~~~~~~~~~i~D~~G--~~~~~~~-------~~~~~~~ 70 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFNE--DMI-PTVGFNMRKITKGNVTIKLWDIGG--QPRFRSM-------WERYCRG 70 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCC--SCC-CCCSEEEEEEEETTEEEEEEEECC--SHHHHTT-------HHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCC--ccc-ccceeeeeeeeeeeEEEEEeeccc--ccccccc-------ccccccc
Confidence 489999999999999999999877542 222 233334445667789999999999 4333322 3345789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCCC
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGH 269 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~ 269 (348)
+|++++|+|+++.. .....++...+... ..++|+++|+||+|+.......+....+.. .....+++++||++|+
T Consensus 71 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~ 150 (164)
T d1zd9a1 71 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKD 150 (164)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred cchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCc
Confidence 99999999998653 33334444444332 267999999999999764433333333321 1233478999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 151 gv~e~~~~l~~~~ 163 (164)
T d1zd9a1 151 NIDITLQWLIQHS 163 (164)
T ss_dssp THHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcc
Confidence 9999999999865
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=3e-22 Score=166.59 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.||+++|.+|||||||++++.+..+.. ..++.+.+..............+.+|||+|. ..+..+.. .+++
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~--~~~~~~~~-------~~~~ 73 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ--EEFDAITK-------AYYR 73 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTG--GGTTCCCH-------HHHT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCc--cchhhhhh-------hhhc
Confidence 489999999999999999999766542 1233333444444444455678999999994 34444332 3368
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. .....++... .....+.|+++|+||+|+...+.+ .+....+.+..+. ++++|||++|.|+
T Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g~~v 151 (164)
T d1z2aa1 74 GAQACVLVFSTTDRESFEAISSWREKV-VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRTSVKEDLNV 151 (164)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHH-HHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECBTTTTBSS
T ss_pred cCceEEEEEeccchhhhhhcccccccc-cccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCC-EEEEeccCCCcCH
Confidence 999999999998654 3333343333 332368999999999998754322 1223334444444 8999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++|+.|.+.+
T Consensus 152 ~e~f~~l~~~~ 162 (164)
T d1z2aa1 152 SEVFKYLAEKH 162 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.2e-22 Score=166.01 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=107.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.||+++|.+|||||||++++++.++....+ ....+........+.....+.+||||| +..+..+... +++
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g--~~~~~~~~~~-------~~~ 75 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG--QERFRAVTRS-------YYR 75 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTT--GGGTCHHHHH-------HHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCC--chhHHHHHHH-------Hhc
Confidence 489999999999999999999887653222 122222333333444456899999999 4444444333 367
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. .....++....+......|+++|+||+|+...... .+....+.+..+ .++++|||++|.|+
T Consensus 76 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Saktg~~v 154 (166)
T d1z0fa1 76 GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG-LLFLEASAKTGENV 154 (166)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred CCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 899999999997643 33334444443333467899999999998643322 222333444444 38999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++|..|.+.+
T Consensus 155 ~e~f~~i~~~i 165 (166)
T d1z0fa1 155 EDAFLEAAKKI 165 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.5e-22 Score=168.84 Aligned_cols=157 Identities=19% Similarity=0.173 Sum_probs=105.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe--EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
|..||+++|.+|||||||++++++.++.. ....+.... ....++.....+.+||++| +.....+ ...
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~~~-------~~~ 70 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAG--TEQFASM-------RDL 70 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCC--TTCCHHH-------HHH
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCC--ccCCceeeeeeeeeecCcceEeeccccCCC--ccccccc-------hHH
Confidence 45689999999999999999999877642 222332222 2233344457789999999 4333333 233
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|.++.. .....++....... ..+.|+++|+||+|+...... ......+....+ .++++|||++
T Consensus 71 ~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sak~ 149 (167)
T d1kaoa_ 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG-CPFMETSAKS 149 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SCEEEECTTC
T ss_pred HhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcC-CeEEEECCCC
Confidence 467899999999998654 33444444433221 267899999999998653221 112223333333 3789999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|++++|..|.+.+
T Consensus 150 g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 150 KTMVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=5.6e-22 Score=165.92 Aligned_cols=158 Identities=21% Similarity=0.217 Sum_probs=109.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
||+++|.+|||||||++++.+.++... .++.+.+..............+.+|||+| +..+..+.. .+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g--~~~~~~~~~-------~~~~~ 78 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG--QERYHSLAP-------MYYRG 78 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECC--SGGGGGGHH-------HHHTT
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCC--chhhhhhHH-------HHhhC
Confidence 799999999999999999997775422 22222222222333334457799999999 444444433 34689
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|.++.. .....++....+....+.|+++|+||+|+.....+ .+....+....+ .++++|||++|.||+
T Consensus 79 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~-~~~~e~SAk~g~~V~ 157 (170)
T d1r2qa_ 79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNS-LLFMETSAKTSMNVN 157 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred cceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcC-CEEEEeeCCCCCCHH
Confidence 99999999998654 33444444444444478999999999998654322 122333333333 489999999999999
Q ss_pred HHHHHHHHhCCC
Q 018949 273 DIRDWILTKLPL 284 (348)
Q Consensus 273 eL~~~i~~~l~~ 284 (348)
++|+.|.+.++.
T Consensus 158 e~f~~l~~~i~~ 169 (170)
T d1r2qa_ 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.87 E-value=1.1e-21 Score=164.48 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=109.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+.......++. .............+.+||+||.... . .....++
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~----~~~~~~~~~~~~~~~i~D~~g~~~~--~-------~~~~~~~ 77 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTV----GFNVETVTYKNVKFNVWDVGGQDKI--R-------PLWRHYY 77 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEET----TEEEEEEEETTEEEEEEEESCCGGG--H-------HHHGGGT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCCcccee----eeeEEEeeccceeeEEecCCCcchh--h-------hHHHhhh
Confidence 4568999999999999999999987765333222 2333445567789999999995332 2 2344568
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHH--h-cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYE--K-FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~-~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|+++.. .....++...+.. ...+.|+++|+||+|+.+.....+....+. . ....+++++|||++
T Consensus 78 ~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~t 157 (173)
T d1e0sa_ 78 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 157 (173)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred cccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCC
Confidence 9999999999997644 3334445544432 236799999999999976433332322221 1 12234789999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|+|+++++++|.+.+
T Consensus 158 g~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 158 GDGLYEGLTWLTSNY 172 (173)
T ss_dssp TBTHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHhc
Confidence 999999999998875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.87 E-value=7.6e-22 Score=166.87 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=109.4
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..+..+|+++|.+|||||||++++.+..+....++.+... .....++..+.+|||||. ..+..+ ...
T Consensus 14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~g~--~~~~~~-------~~~ 80 (182)
T d1moza_ 14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQ--TSIRPY-------WRC 80 (182)
T ss_dssp CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC------CCTT-------GGG
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEE----EEEeeCCEEEEEEecccc--cccchh-------HHh
Confidence 3466799999999999999999999888765544444332 334556789999999994 333332 234
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA 265 (348)
++..+|++++|+|+++... ....++...+... ..+.|++||+||+|+.+.....+....+. .....+++++|||
T Consensus 81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA 160 (182)
T d1moza_ 81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 160 (182)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 5789999999999987652 3334444444432 25789999999999976433333333222 1222347899999
Q ss_pred CCCCCHHHHHHHHHHhC
Q 018949 266 KYGHGVEDIRDWILTKL 282 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l 282 (348)
++|+|+++++++|.+.+
T Consensus 161 ~~g~gv~e~~~~l~~~i 177 (182)
T d1moza_ 161 IKGEGITEGLDWLIDVI 177 (182)
T ss_dssp GGTBTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998865
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.4e-22 Score=167.43 Aligned_cols=157 Identities=21% Similarity=0.229 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCC-ceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.||+++|.+|||||||++++.+.++......+. .+........+.....+.+||||| ++.+..+.. ..+.
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g--~e~~~~~~~-------~~~~ 75 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG--QERYRRITS-------AYYR 75 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSS--GGGTTCCCH-------HHHT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCC--cHHHHHHHH-------HHhh
Confidence 389999999999999999999877653322222 222222222334456899999999 444444433 3368
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++|+|+|.++.. .....++....+....+.|+++|+||+|+.+.... ........... ..++++|||++|.|+
T Consensus 76 ~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~g~~i 154 (175)
T d2f9la1 76 GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN-NLSFIETSALDSTNV 154 (175)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEEECCTTTCTTH
T ss_pred ccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhccc-CceEEEEecCCCcCH
Confidence 999999999998654 44444454444433467899999999999754221 11222222333 348999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++|+.+.+.+
T Consensus 155 ~e~f~~l~~~i 165 (175)
T d2f9la1 155 EEAFKNILTEI 165 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1e-21 Score=163.87 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=109.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
|..||+++|.+|||||||++++.+.++.. ...++....... ........+.+||++|. ..+..+.. .
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~--~~~~~~~~-------~ 70 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGT--EQFTAMRD-------L 70 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSS--CSSTTHHH-------H
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccccceeEEeeeeEEEeccccccCc--cccccccc-------c
Confidence 45689999999999999999999887642 233332222222 33455678999999995 33444432 3
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|.++.. +....++....+.. ..+.|+++|+||+|+...... .+....+.......++++|||++
T Consensus 71 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 150 (167)
T d1c1ya_ 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred cccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCC
Confidence 467899999999998753 44555555444322 267899999999999754321 11222333333345899999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|++++|..|.+.+
T Consensus 151 g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 151 KINVNEIFYDLVRQI 165 (167)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998865
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.86 E-value=6.8e-22 Score=173.41 Aligned_cols=157 Identities=21% Similarity=0.243 Sum_probs=108.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE------------------EEeCCCeeEEEEeCCCCch
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG------------------ICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~------------------~~~~~~~~~~l~DtpG~~~ 175 (348)
|.|.|+|+|++|+|||||+|+|++...... ...++|...... .+..++..+.++||||+.+
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~ 82 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR-EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCEEEEEeCCCccHHHHHHHHHhhcchhe-ecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence 556799999999999999999987654321 111222111110 1234567899999999643
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-----------
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----------- 244 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~----------- 244 (348)
.. ..+..++..||++|+|+|+..+.+.+...++..+.. .++|+|+|+||+|+......
T Consensus 83 f~---------~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~ 151 (227)
T d1g7sa4 83 FT---------TLRKRGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (227)
T ss_dssp CT---------TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred cc---------ccchhcccccceEEEEEecccCcccchhHHHHHhhc--CCCeEEEEEECccCCCchhhhhhHHHHHhhh
Confidence 21 122345788999999999999999998888888887 78999999999998643210
Q ss_pred --------------HHHHHHHHh-------------cCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 245 --------------AKKLEWYEK-------------FTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 245 --------------~~~~~~~~~-------------~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+....+.. .....+++++||++|.|+++|++.|....
T Consensus 152 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~ 216 (227)
T d1g7sa4 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA 216 (227)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 001111111 12234799999999999999999987654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.4e-21 Score=162.78 Aligned_cols=157 Identities=21% Similarity=0.208 Sum_probs=105.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe-E-EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-I-LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~-~-~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..||+++|.+|||||||+++|++..+.. ....+.... . ..........+.+||++|. ..+... ...+
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~~-------~~~~ 71 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEEETTEEEEEEEEEECCC--GGGHHH-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC--ccCCccceeeccceeeeceeeeeeeeeccCc--cccccc-------hhhh
Confidence 3489999999999999999999877542 222222222 2 2223344577999999995 333332 2234
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..++++++|+|.++.. .....|+....+.. ..++|+++|+||+|+.......+....+....+. ++++|||++|.
T Consensus 72 ~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~e~Sak~g~ 150 (166)
T d1ctqa_ 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGI-PYIETSAKTRQ 150 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC-CEEECCTTTCT
T ss_pred hhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCC-eEEEEcCCCCc
Confidence 67899999999998654 33344433332221 2568999999999987543222333444444443 79999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++|..|.+.+.
T Consensus 151 gi~e~f~~i~~~i~ 164 (166)
T d1ctqa_ 151 GVEDAFYTLVREIR 164 (166)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=5.5e-22 Score=169.71 Aligned_cols=158 Identities=17% Similarity=0.129 Sum_probs=109.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.||+|+|.+|||||||++++++..+... .++.+++.......+......+.+||||| ++.+..+. ..+++
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G--~e~~~~~~-------~~~~~ 77 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG--QERFRTIT-------SSYYR 77 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTT--TTTTTCCC-------GGGGT
T ss_pred EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCC--chhhHHHH-------HHHhc
Confidence 3899999999999999999997765422 23334444444444555667899999999 44444432 24578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++|+|+|.++.. .....++....+....+.|+++|+||+|+...... .+.........+ .+++++||++|.|+
T Consensus 78 ~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~e~SAk~g~gi 156 (194)
T d2bcgy1 78 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK-MPFLETSALDSTNV 156 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEECCTTTCTTH
T ss_pred cCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccC-cceEEEecCcCccH
Confidence 999999999998654 33333333333333478899999999999864322 122222333333 47899999999999
Q ss_pred HHHHHHHHHhCC
Q 018949 272 EDIRDWILTKLP 283 (348)
Q Consensus 272 ~eL~~~i~~~l~ 283 (348)
+++|+.|.+.+.
T Consensus 157 ~e~f~~l~~~i~ 168 (194)
T d2bcgy1 157 EDAFLTMARQIK 168 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.6e-22 Score=166.62 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=105.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
||+++|.+|||||||++++++..+... .++.+..........+.....+.+||||| +..+..+. ..++..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g--~~~~~~~~-------~~~~~~ 75 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG--QEKFGGLR-------DGYYIQ 75 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTT--HHHHSSCG-------GGGTTT
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccccccccccccccccccc--ccccceec-------chhccc
Confidence 799999999999999999998775421 11112122222222344567899999999 54444332 345789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
+|++++|+|.++.. .....++....+. ..+.|+++|+||+|+.......+.. ...... ..++++|||++|.|+++
T Consensus 76 ~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~-~~~~~~-~~~~~e~Sak~~~~v~e 152 (170)
T d1i2ma_ 76 AQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSI-VFHRKK-NLQYYDISAKSNYNFEK 152 (170)
T ss_dssp CCEEEEEEETTSGGGGTTHHHHHHHHHHH-HCSCCEEEEEECCCCSCSCCTTTSH-HHHSSC-SSEEEEEBTTTTBTTTH
T ss_pred ccchhhccccccccccchhHHHHHHHhhc-cCCCceeeecchhhhhhhhhhhHHH-HHHHHc-CCEEEEEeCCCCCCHHH
Confidence 99999999998754 5555555544433 3689999999999997654322222 222333 34899999999999999
Q ss_pred HHHHHHHhCCCC
Q 018949 274 IRDWILTKLPLG 285 (348)
Q Consensus 274 L~~~i~~~l~~~ 285 (348)
+|.+|.+.+...
T Consensus 153 ~f~~l~~~l~~~ 164 (170)
T d1i2ma_ 153 PFLWLARKLIGD 164 (170)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHccC
Confidence 999999877543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.9e-21 Score=165.83 Aligned_cols=160 Identities=20% Similarity=0.210 Sum_probs=112.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..||+++|.+|||||||++++.+.++. ..+.+|....... ........+.+|||+| +..+..+. ..
T Consensus 2 ~~iKvvllG~~~vGKTSli~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g--~~~~~~~~-------~~ 70 (191)
T d2ngra_ 2 QTIKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG--QEDYDRLR-------PL 70 (191)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECC--SGGGTTTG-------GG
T ss_pred CceEEEEECCCCcCHHHHHHHHHhCCCC--CCcCCceeeecceeEeeCCceeeeecccccc--chhhhhhh-------hh
Confidence 4568999999999999999999988764 2233333333222 2334456799999999 44444442 34
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-------------HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~~~~~~~~~~ 256 (348)
++..+|++++|+|.++.. +....++.........+.|+++|+||+|+...... .+....+....+
T Consensus 71 ~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (191)
T d2ngra_ 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150 (191)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred cccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcC
Confidence 578999999999998754 44445555555554578999999999998643321 112233333444
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
..++++|||++|.||+++|+.+.+.+..
T Consensus 151 ~~~~~e~SAk~~~~V~e~f~~l~~~~~~ 178 (191)
T d2ngra_ 151 AVKYVECSALTQKGLKNVFDEAILAALE 178 (191)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHTS
T ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHHhc
Confidence 4589999999999999999998876644
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1e-21 Score=164.34 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=104.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
||+++|.+|||||||++++++..+. ..+.+|........ .+.....+.+|||+|. ..+... ...++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~--~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~-------~~~~~~ 72 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFR--ESYIPTVEDTYRQVISCDKSICTLQITDTTGS--HQFPAM-------QRLSIS 72 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCC--SSCCCCSCEEEEEEEEETTEEEEEEEEECCSC--SSCHHH-------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CccCcceeeccccceeeccccceecccccccc--cccccc-------cccccc
Confidence 7999999999999999999988764 23333433333333 3334467888999994 333333 233467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcc--cccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVG--DHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~--~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
.+|++++|+|.++.. .....++....+ ....+.|+++|+||+|+.....+ .+....+.+..+ .++++|||++|.
T Consensus 73 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~-~~~~e~Sak~~~ 151 (171)
T d2erxa1 73 KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAKLNH 151 (171)
T ss_dssp HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred ceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcC-CeEEEEcCCCCc
Confidence 899999999998643 333344433322 12267899999999998643322 122233333333 389999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 018949 270 GVEDIRDWILTKLPL 284 (348)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (348)
|++++|+.|.+.+..
T Consensus 152 ~v~e~f~~l~~~~~~ 166 (171)
T d2erxa1 152 NVKELFQELLNLEKR 166 (171)
T ss_dssp SHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.1e-21 Score=163.53 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=111.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE--eEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..||+++|.+|||||||++++.+.++... ..+..+.. .....+......+.+|||||. ..+..+.. .+
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~ 76 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDTFDPE-LAATIGVDFKVKTISVDGNKAKLAIWDTAGQ--ERFRTLTP-------SY 76 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCCSEEEEEEEEEETTEEEEEEEEEECSS--GGGCCSHH-------HH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCc-cccceeecceeEEEEEeccccEEEEEECCCc--hhhHHHHH-------HH
Confidence 34899999999999999999998776422 22222222 222233445678999999994 34444433 33
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|.++.. .....++....+.. ....|+++++||.|.............+....+ .++++|||++|+
T Consensus 77 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~tg~ 155 (177)
T d1x3sa1 77 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHS-MLFIEASAKTCD 155 (177)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred HhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCC-CEEEEEeCCCCC
Confidence 68999999999987643 33334444443321 256889999999998754322223333444444 389999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCC
Q 018949 270 GVEDIRDWILTKLPLGPAYY 289 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~ 289 (348)
|++++|+++.+.+...|..|
T Consensus 156 gv~e~f~~l~~~l~~~p~l~ 175 (177)
T d1x3sa1 156 GVQCAFEELVEKIIQTPGLW 175 (177)
T ss_dssp THHHHHHHHHHHHHTSGGGT
T ss_pred CHHHHHHHHHHHHccCcccc
Confidence 99999999998876655544
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=7.8e-22 Score=165.59 Aligned_cols=157 Identities=21% Similarity=0.193 Sum_probs=106.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.||+++|.+|||||||++++.+.++..... +.+.+........+.....+.+|||||. ..+..+ ...++.
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~~-------~~~~~~ 76 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ--ERFRSV-------TRSYYR 76 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCS--GGGHHH-------HHTTST
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCc--hhhhhh-------HHHHhh
Confidence 389999999999999999999877642211 2222222222233444567999999994 333333 445688
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. .....++....+....+.|+++|+||+|+...... ......+....+ .++++|||++|.|+
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~e~Sak~~~gi 155 (174)
T d2bmea1 77 GAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENE-LMFLETSALTGENV 155 (174)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred hCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCC-CEEEEeeCCCCcCH
Confidence 999999999998654 33344444444433468999999999998643322 122233333333 48999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++|.++.+.+
T Consensus 156 ~e~f~~l~~~i 166 (174)
T d2bmea1 156 EEAFVQCARKI 166 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.2e-21 Score=164.32 Aligned_cols=156 Identities=19% Similarity=0.223 Sum_probs=105.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCC-CceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
||+++|.+|||||||++++++.++......+ ..+..............+.+||++| +..+..+.. ..+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g--~~~~~~~~~-------~~~~~ 75 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG--QESFRSITR-------SYYRG 75 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTT--GGGTSCCCH-------HHHTT
T ss_pred EEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccC--ccchhhHHH-------HHhhc
Confidence 8999999999999999999988765332222 2233333333444457899999999 444444433 33678
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++|+|+|.++.. .....++....+....++|+++|+||+|+...... .+....+....+ .++++|||++|.|++
T Consensus 76 ~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~-~~~~e~Sa~tg~~V~ 154 (173)
T d2a5ja1 76 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-LIFMETSAKTACNVE 154 (173)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEECTTTCTTHH
T ss_pred cCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcC-CEEEEecCCCCCCHH
Confidence 99999999998754 44444554444433468999999999997643211 122333333333 489999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
++|..|.+.+
T Consensus 155 e~f~~i~~~i 164 (173)
T d2a5ja1 155 EAFINTAKEI 164 (173)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.85 E-value=1.9e-21 Score=162.40 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
||+++|.+|||||||++++.+.++. ..+.+|...... ..++.....+.+||++|. ..+..+.. .+++
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~--~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~--~~~~~~~~-------~~~~ 74 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ--EDYAAIRD-------NYFR 74 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CHHHHH-------HHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCC--cccCCccccccccccccccccccccccccccc--cchhhhhh-------hccc
Confidence 8999999999999999999887754 233333333222 223444578899999994 33333322 3367
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+.....+ .+....+....+ +++++|||++|.|
T Consensus 75 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g~g 153 (168)
T d1u8za_ 75 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN-VNYVETSAKTRAN 153 (168)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEECCTTTCTT
T ss_pred ccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcC-CeEEEEcCCCCcC
Confidence 899999999998744 33333433333221 267899999999998643221 112223333333 4799999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
++++|+.|.+.+
T Consensus 154 v~e~f~~l~~~i 165 (168)
T d1u8za_ 154 VDKVFFDLMREI 165 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.2e-21 Score=163.33 Aligned_cols=157 Identities=25% Similarity=0.280 Sum_probs=105.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..||+++|.+|||||||++++.+..+.. ...+|..... ...++...+.+.+|||+|.. .+..+. ..
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~--~~~~~~-------~~ 71 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVD--SYDPTIENTFTKLITVNGQEYHLQLVDTAGQD--EYSIFP-------QT 71 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS--CCCSSCCEEEEEEEEETTEEEEEEEEECCCCC--TTCCCC-------GG
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCc--ccCcceecccceEEecCcEEEEeeeccccccc--cccccc-------ch
Confidence 44589999999999999999998876542 2222222222 22334445778899999953 333332 24
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|.+++. .....++....+.. ..+.|+++|+||+|+.....+ .+....+....+ .++++|||++
T Consensus 72 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~e~Sak~ 150 (167)
T d1xtqa1 72 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN-AAFLESSAKE 150 (167)
T ss_dssp GTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECCTTC
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcC-CEEEEEecCC
Confidence 478999999999998754 33334443333322 267899999999998654322 112233333334 3789999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|++++|+.|++.+
T Consensus 151 ~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 151 NQTAVDVFRRIILEA 165 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.1e-21 Score=162.36 Aligned_cols=157 Identities=19% Similarity=0.164 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCC--ceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ--TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.||+++|.+|||||||++++++.++......+. .+..............+.+|||||. ..+..+ ...++
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--e~~~~~-------~~~~~ 77 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ--ERFRSV-------THAYY 77 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------CCG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCc--hhhHHH-------HHHhh
Confidence 389999999999999999998877542222222 2222222223334467899999994 333332 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
..+|++++|+|.++.. .....++....+......|+++|+||+|+.....+ .+....+....+ .++++|||++|.|
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g~g 156 (170)
T d2g6ba1 78 RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLN 156 (170)
T ss_dssp GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT-CCEEECCTTTCTT
T ss_pred cCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcC-CEEEEEeCCCCcC
Confidence 8999999999998654 33334444444443467899999999998764322 112223333334 3899999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
++++|++|.+.+
T Consensus 157 i~e~f~~l~~~i 168 (170)
T d2g6ba1 157 VDLAFTAIAKEL 168 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998765
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=2.9e-21 Score=162.01 Aligned_cols=157 Identities=22% Similarity=0.219 Sum_probs=100.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeE-EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRI-LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~-~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
||+++|.+|||||||++++.+.++... .++.+.+.... ..........+.+|||||. .... .....+++
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~--~~~~-------~~~~~~~~ 74 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ--ERFQ-------SLGVAFYR 74 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------CCST
T ss_pred EEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCc--hhhh-------hHHHHHhh
Confidence 899999999999999999998775421 12222222211 1112233466899999994 2222 22345688
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhc---cc-ccCCCCEEEEEeccCCCChhhH--HHHHHHHHhcCCCCeEEEecCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGV---GD-HKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~---~~-~~~~~p~ivv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.+|++++|+|.++.. .....|+.+.. .. ...++|+++|+||+|+...... ......+....+..++++|||+
T Consensus 75 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 154 (175)
T d1ky3a_ 75 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK 154 (175)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred ccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCC
Confidence 999999999998654 33333333222 11 1257899999999998754321 2334445555566689999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|++++|++|.+.+
T Consensus 155 ~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 155 NAINVDTAFEEIARSA 170 (175)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999988754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=6.2e-21 Score=159.57 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.||+++|.+|||||||++++.+..+. ....++........ ++...+.+.+||++|.. .+.... ..++
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~--~~~~~~-------~~~~ 74 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCVIDDRAARLDILDTAGQE--EFGAMR-------EQYM 74 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECC------CCHHH-------HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCcccccceeeeeeecccccccccccccccc--cccccc-------cccc
Confidence 48999999999999999999987654 23333333333333 33445689999999953 333332 2336
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++++|+|.+++. .....++....+.. ....|+++|+||+|+.....+ .+....+.+..+. ++++|||++|.
T Consensus 75 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~~~ 153 (171)
T d2erya1 75 RTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKV-TYMEASAKIRM 153 (171)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTC-EEEECBTTTTB
T ss_pred cccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCC-EEEEEcCCCCc
Confidence 7899999999998754 44444444433322 257899999999998754221 2223344444444 89999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++|..|.+.+
T Consensus 154 ~i~e~f~~l~~~i 166 (171)
T d2erya1 154 NVDQAFHELVRVI 166 (171)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=4e-21 Score=159.91 Aligned_cols=155 Identities=20% Similarity=0.189 Sum_probs=105.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
||+++|.+|||||||++++++.++.. ...+..+.... ...+......+.+||||| +..+..+.. .+++
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G--~~~~~~~~~-------~~~~ 73 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAG--QERFRTITT-------AYYR 73 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTT--GGGTSCCCH-------HHHT
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCC-ccCCccceeEEEEEEEECCEEEEEEEEECCC--chhhHHHHH-------HHHh
Confidence 89999999999999999999877542 22222333333 333344456788999999 555554433 3478
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
.+|++++|+|.++.. .....++...........|+++++||.|+.......+....+....+ .++++|||++|+|++
T Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 152 (166)
T d1g16a_ 74 GAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVN 152 (166)
T ss_dssp TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT-CCEEECBTTTTBSHH
T ss_pred cCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcC-CeEEEECCCCCCCHH
Confidence 999999999998754 22333333333333367889999999998765433344444444445 489999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
++|++|.+.+
T Consensus 153 e~f~~l~~~i 162 (166)
T d1g16a_ 153 EIFFTLAKLI 162 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.5e-21 Score=162.76 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.||+++|.+|||||||++++.+.++.... ++.+................+.+|||+|. .....+ ...++.
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~--~~~~~~-------~~~~~~ 74 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ--ERFHAL-------GPIYYR 74 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CCSST
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCc--ceeccc-------chhhcc
Confidence 38999999999999999999987765211 12222222223333444578999999994 332222 334588
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. .....++...........|+++|+||+|+.....+ .+....+.+..+. ++++|||++|.|+
T Consensus 75 ~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~-~~~e~Sak~~~~v 153 (167)
T d1z08a1 75 DSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYHTSAKQNKGI 153 (167)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEEBTTTTBSH
T ss_pred CCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCC-eEEEEecCCCcCH
Confidence 999999999998754 33334443333222367899999999998754322 1223334444444 8999999999999
Q ss_pred HHHHHHHHHhCC
Q 018949 272 EDIRDWILTKLP 283 (348)
Q Consensus 272 ~eL~~~i~~~l~ 283 (348)
+++|..|.+.+.
T Consensus 154 ~e~F~~l~~~i~ 165 (167)
T d1z08a1 154 EELFLDLCKRMI 165 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=3.5e-21 Score=163.05 Aligned_cols=157 Identities=22% Similarity=0.208 Sum_probs=106.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
||+++|.+|||||||++++++.++... .++.+.+..............+.+|||||... .... ...++..
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~--~~~~-------~~~~~~~ 74 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER--FQSL-------GVAFYRG 74 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG--GSCS-------CCGGGTT
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccc--cccc-------ccccccC
Confidence 899999999999999999998775421 12223333333344445567899999999533 2222 2244789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcc---c-ccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVG---D-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~---~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+|++++|+|.++.. .....++..... . ...++|+++|+||+|+.......+....+.......++++|||++|.
T Consensus 75 ~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~ 154 (184)
T d1vg8a_ 75 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAI 154 (184)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTB
T ss_pred ccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCc
Confidence 99999999997643 233333322221 1 12468999999999987654333333444444445689999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++|+++.+.+
T Consensus 155 gI~e~f~~l~~~i 167 (184)
T d1vg8a_ 155 NVEQAFQTIARNA 167 (184)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.84 E-value=4.2e-20 Score=159.30 Aligned_cols=158 Identities=20% Similarity=0.234 Sum_probs=106.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCC--------CCceEEeEEEEE-----------------------eCCCee
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNK--------PQTTRHRILGIC-----------------------SGPEYQ 164 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~--------~~~t~~~~~~~~-----------------------~~~~~~ 164 (348)
.+|+++|+.++|||||+++|++......... .+.+.. ..... ......
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 87 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAET-NIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR 87 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEE-EEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhh-hhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence 4899999999999999999987432111000 000000 00000 001136
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhh
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
+.++||||+.+ +...+...+..||++|+|+|+..+. +.+.+.....+..+ .-.|+||++||+|+.+...
T Consensus 88 ~~iiD~PGH~d---------f~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~ 157 (205)
T d2qn6a3 88 ISFIDAPGHEV---------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEE 157 (205)
T ss_dssp EEEEECSCHHH---------HHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECGGGSCHHH
T ss_pred EEEeccchHHH---------HHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CCceeeeccccCCCccchH
Confidence 89999999533 3345667788999999999999986 65656666665552 2248899999999998665
Q ss_pred HHHHHHHHHhc-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 244 IAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 244 ~~~~~~~~~~~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
........... ....|++++||++|.|+++|++.|...++.
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 158 ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 43333333221 233589999999999999999999999875
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=1.3e-20 Score=157.39 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=106.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE--eEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+.++.. ....+... ......+.....+.+||++|. ..+..+.. .++
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~--~~~~~~~~-------~~~ 73 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFVP--DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ--EEFSAMRE-------QYM 73 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCT--TCCTTCCEEEEEEEEETTEEEEEEEEECCSC--GGGCSSHH-------HHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCc--ccCcceeeccccccccccccccccccccccc--cccccchh-------hhh
Confidence 489999999999999999999877542 22222222 222234455678899999994 34444432 346
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.+|++++|+|.++.. .....|+....+.. ..+.|+|+|+||+|+.....+ .+....+....+. ++++|||+++.
T Consensus 74 ~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~-~~~e~Sak~~~ 152 (169)
T d1x1ra1 74 RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI-PYIETSAKDPP 152 (169)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC-CEEEEBCSSSC
T ss_pred hhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCC-EEEEEcCCCCC
Confidence 7899999999998744 44445554443332 257899999999999765432 1223334334443 79999999986
Q ss_pred -CHHHHHHHHHHhC
Q 018949 270 -GVEDIRDWILTKL 282 (348)
Q Consensus 270 -gi~eL~~~i~~~l 282 (348)
||+++|..|.+.+
T Consensus 153 ~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 153 LNVDKTFHDLVRVI 166 (169)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 9999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.2e-20 Score=157.61 Aligned_cols=159 Identities=21% Similarity=0.204 Sum_probs=106.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+.||+++|.+|||||||++++++.++.... ++.+................+.+|||+|. .....+.. .++
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~--~~~~~~~~-------~~~ 73 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ--ERFASLAP-------MYY 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGGHH-------HHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCc--hhHHHHHH-------HHH
Confidence 358999999999999999999988764221 12222222222233444578999999995 33444432 347
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh---hhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---GEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~---~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|.++.. .....++...........|+++|+||+|+... ..+ ......+.+..+. ++++|||++
T Consensus 74 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~ 152 (170)
T d1ek0a_ 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred hccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCC-EEEEecCCC
Confidence 8999999999998754 33333443333333467899999999998532 111 1122333333344 899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|++++|..|.+.++
T Consensus 153 g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 153 GENVNDVFLGIGEKIP 168 (170)
T ss_dssp CTTHHHHHHHHHTTSC
T ss_pred CcCHHHHHHHHHHHhc
Confidence 9999999999998775
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.83 E-value=6.7e-21 Score=163.05 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=105.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEEE-----------------------EEeCCCeeEEEEeC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG-----------------------ICSGPEYQMILYDT 170 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~~-----------------------~~~~~~~~~~l~Dt 170 (348)
.+|+++|++++|||||+|+|++..... .....+.|...... ........+.++||
T Consensus 6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt 85 (195)
T d1kk1a3 6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 85 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeecc
Confidence 379999999999999999998743221 11122222211000 01111245899999
Q ss_pred CCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHH
Q 018949 171 PGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE 249 (348)
Q Consensus 171 pG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~ 249 (348)
||+.+ +...+...+..+|++++|+|+..+. ..+.......++.. ...++|+++||+|+.+.........
T Consensus 86 PGh~~---------f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~~iiv~inK~D~~d~~~~~~~~~ 155 (195)
T d1kk1a3 86 PGHEA---------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYR 155 (195)
T ss_dssp SSHHH---------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred chhhh---------hhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCccceeeeecccchhhHHHHHHHH
Confidence 99422 3445666678999999999999886 44444455555442 2345788999999998654433333
Q ss_pred HHHhc-----CCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 250 WYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 250 ~~~~~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+... ....+++|+||++|+|+++|++.|.+.+|
T Consensus 156 ~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 156 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 33322 12358999999999999999999999876
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.2e-20 Score=156.62 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=103.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
||+++|.+|||||||++++.+.++... ..+.+.+..............+.+||++|.... . .....++..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~--~-------~~~~~~~~~ 78 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF--R-------SLRTPFYRG 78 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG--H-------HHHGGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCccee--h-------hhhhhhhhc
Confidence 899999999999999999998775422 122223333333333444577899999995332 1 123355789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHh---cccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEG---VGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~---~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+|++++++|.+... .....++... .... ..+.|+++|+||+|+.......+....+.+..+..++++|||++|.
T Consensus 79 ~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~ 158 (174)
T d1wmsa_ 79 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDAT 158 (174)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred cceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCc
Confidence 99999999998643 3333333222 1111 2568999999999986532222223344444445589999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++|+.|.+.+
T Consensus 159 gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 159 NVAAAFEEAVRRV 171 (174)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.3e-20 Score=159.77 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--Ee----------CCCeeEEEEeCCCCchhhhhhhHH
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS----------GPEYQMILYDTPGIIEKKIHMLDS 183 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~----------~~~~~~~l~DtpG~~~~~~~~l~~ 183 (348)
.||+++|.+|||||||+++|++.++... ..+..+....... .+ .....+.+||||| +..+..+.
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G--~e~~~~~~- 81 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKFNPK-FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG--QERFRSLT- 81 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCE-EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES--HHHHHHHH-
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCc-cCCcccceeeEEEEEEecccccccccccceEEeccccCCc--chhhHHHH-
Confidence 4899999999999999999998765421 1111111111111 11 1125689999999 55544443
Q ss_pred HHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCe
Q 018949 184 MMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDE 259 (348)
Q Consensus 184 ~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~ 259 (348)
..++..+|++|+|+|.++.. .....++....... ....|+++|+||+|+....++ .+....+....+. +
T Consensus 82 ------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~-~ 154 (186)
T d2f7sa1 82 ------TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI-P 154 (186)
T ss_dssp ------HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-C
T ss_pred ------HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCC-E
Confidence 33478999999999997644 23333333333221 256789999999999754322 1122334444443 8
Q ss_pred EEEecCCCCCCHHHHHHHHHHhC
Q 018949 260 VIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
+++|||++|.|++++|++|.+.+
T Consensus 155 ~~e~Sak~~~~i~e~f~~l~~~i 177 (186)
T d2f7sa1 155 YFETSAATGQNVEKAVETLLDLI 177 (186)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.83 E-value=2.7e-20 Score=159.11 Aligned_cols=159 Identities=18% Similarity=0.104 Sum_probs=115.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc---------------eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK---------------LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~---------------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+|+++|++++|||||+++|++.- ........+.|.+.....+.+.+..+.++||||+.+
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~----- 78 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD----- 78 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHH-----
Confidence 379999999999999999997410 001123345666666667778889999999999533
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHH---hcCC
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYE---KFTD 256 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~---~~~~ 256 (348)
+...+...+..+|++|+|+|+..+.+.++...+.++... ...|+||++||+|+....+. +....++. ...+
T Consensus 79 ----f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~ 153 (196)
T d1d2ea3 79 ----YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG 153 (196)
T ss_dssp ----HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhC
Confidence 345566778999999999999999998888877777663 33578999999999864332 21211222 1122
Q ss_pred ----CCeEEEecCCCC----------CCHHHHHHHHHHhCCC
Q 018949 257 ----VDEVIPVSAKYG----------HGVEDIRDWILTKLPL 284 (348)
Q Consensus 257 ----~~~i~~vSA~~g----------~gi~eL~~~i~~~l~~ 284 (348)
..|++++||++| .|+.+|++.|.+.+|.
T Consensus 154 ~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~ 195 (196)
T d1d2ea3 154 YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (196)
T ss_dssp SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCCC
Confidence 358999999998 5888899888887764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.83 E-value=4.3e-20 Score=151.62 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=104.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
||+++|++|||||||+|+|.+.++....... .......+.....+.+||+||... .. .....++..+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~g~~~--~~-------~~~~~~~~~~ 68 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTI----GFNVETVEYKNISFTVWDVGGQDK--IR-------PLWRHYFQNT 68 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCS----SCCEEEEECSSCEEEEEECCCCGG--GH-------HHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccccce----eeEEEEEeeeeEEEEEecCCCccc--ch-------hhhhhhhccc
Confidence 7999999999999999999987764222111 122234556778899999999533 22 2233557899
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~~g~g 270 (348)
+++++++|.++.. .....++.+..... ....|+++++||.|+.+.....+...... ......++++|||++|+|
T Consensus 69 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~g 148 (160)
T d1r8sa_ 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (160)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred eeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCC
Confidence 9999999997754 22333444443322 26789999999999886543332222211 112335899999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++++++|.+++
T Consensus 149 i~e~~~~l~~~l 160 (160)
T d1r8sa_ 149 LYEGLDWLSNQL 160 (160)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=2.5e-21 Score=162.42 Aligned_cols=156 Identities=14% Similarity=0.134 Sum_probs=81.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.||+++|.+|||||||+++|++..+.. ...+..+.......+. .....+.+||||| +..+..+ ...++
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G--~e~~~~~-------~~~~~ 76 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAG--QERFRTI-------TTAYY 76 (173)
T ss_dssp EEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCTTT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCC-ccCccccceEEEEEEEECCEEEEEEEEECCC--chhhHHH-------HHHhc
Confidence 489999999999999999999877542 2222222333333333 3346788999999 4333333 23447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+.+|++|+|+|++++. .....++.........+.|+++|+||.|+...... ...........+ .++++|||++|+|
T Consensus 77 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~g 155 (173)
T d2fu5c1 77 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANIN 155 (173)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT-CEEEECCC---CC
T ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcC-CEEEEEeCCCCCC
Confidence 8999999999998754 33333333333333477999999999999754322 111222222233 4799999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
++++|.+|.+.+
T Consensus 156 v~e~f~~l~~~i 167 (173)
T d2fu5c1 156 VENAFFTLARDI 167 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.82 E-value=1.8e-19 Score=150.83 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=106.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..||+++|.+|||||||++++.+.++.......+.+... ....+..+.++|++|... .... ...++
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~--~~~~-------~~~~~ 80 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQES--LRSS-------WNTYY 80 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEE----EEETTEEEEEEECCC------CGG-------GHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEE----EeecceEEEEeccccccc--cccc-------hhhhh
Confidence 5569999999999999999999999887665555544333 234568899999999533 2222 22335
Q ss_pred cCccEEEEEecCCCCCchHH--HHHHH-hcccccCCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAPERID--EILEE-GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~--~~~~~-~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~~ 267 (348)
..++++++|+|.++...... ..... .......+.|+++|+||+|+.......+...... ......++++|||++
T Consensus 81 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~t 160 (177)
T d1zj6a1 81 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 160 (177)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred ccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCC
Confidence 78999999999986552221 11221 2222236899999999999976544333333322 223445899999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|+|+++++++|.+.+
T Consensus 161 g~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 161 GEGLCQGLEWMMSRL 175 (177)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=1.3e-20 Score=159.05 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.||+++|.+|||||||+++++..++. ..+.+|....... .++...+.+.+||++|. ..+..+. ..++
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~~~-------~~~~ 71 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNVR-------PLSY 71 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCS--GGGTTTG-------GGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC--CccCCceeecccccccccceEEeecccccccc--ccccccc-------cchh
Confidence 38999999999999999999988764 2223332222222 33455678899999994 4443332 2447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-------------HHHHHHHHhcCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTDVD 258 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~~~~~~~~~~~~ 258 (348)
..+|++++|+|.++.. .....++...+.....+.|+++|+||+|+...... .+....+.+..+..
T Consensus 72 ~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~ 151 (179)
T d1m7ba_ 72 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 151 (179)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred hhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCC
Confidence 8999999999998754 34444555555554578999999999998642211 11222333344556
Q ss_pred eEEEecCCCCC-CHHHHHHHHHHhC
Q 018949 259 EVIPVSAKYGH-GVEDIRDWILTKL 282 (348)
Q Consensus 259 ~i~~vSA~~g~-gi~eL~~~i~~~l 282 (348)
++++|||++|. |++++|+.+.+.+
T Consensus 152 ~y~E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 152 TYIECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 89999999998 5999999887754
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3e-20 Score=154.97 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=100.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.||+++|.+|||||||++++.+..+. ..+.+|...... ...+...+.+.+|||+|.. .+.. ...++
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~f~--~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~--~~~~--------~~~~~ 70 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQE--DTIQ--------REGHM 70 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCC--CCHH--------HHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeccccccccccccceEEEEeeccccc--cccc--------chhhh
Confidence 48999999999999999999987764 223333222222 2233445789999999953 2221 12335
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhc-ccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGV-GDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~-~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++++|+|.++.. .....++.... .....+.|+++|+||+|+.....+ .+....+....+ .++++|||++|.
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~-~~~~e~Saktg~ 149 (168)
T d2atva1 71 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA-CAFYECSACTGE 149 (168)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SEEEECCTTTCT
T ss_pred cccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhC-CeEEEEccccCC
Confidence 7899999999998754 22222222111 111267999999999998643322 122233333334 389999999998
Q ss_pred C-HHHHHHHHHHhC
Q 018949 270 G-VEDIRDWILTKL 282 (348)
Q Consensus 270 g-i~eL~~~i~~~l 282 (348)
| |+++|..|.+.+
T Consensus 150 gnV~e~F~~l~~~i 163 (168)
T d2atva1 150 GNITEIFYELCREV 163 (168)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 5 999999988754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.7e-20 Score=155.09 Aligned_cols=158 Identities=22% Similarity=0.231 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe--EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
-||+++|.+|||||||++++.+.........+.+.... ....++.....+.+||+||.... .. + ....++
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~-----e~-~--~~~~~~ 75 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-----NE-W--LHDHCM 75 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-----HH-H--HHHCCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccc-----cc-c--cccccc
Confidence 38999999999999999999987654333222222222 22233445567899999873210 11 1 134568
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++|+|+|.++.. .....++....... ..+.|+++|+||+|+....++ .+....+....+ .++++|||++|.
T Consensus 76 ~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sak~g~ 154 (172)
T d2g3ya1 76 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAVQH 154 (172)
T ss_dssp CCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred cccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcC-CeEEEEeCCCCc
Confidence 9999999999998654 33344444333322 267999999999998754322 112233333334 389999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++|+.|.+.+
T Consensus 155 ~i~~~f~~l~~~i 167 (172)
T d2g3ya1 155 NVKELFEGIVRQV 167 (172)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=8.3e-20 Score=157.23 Aligned_cols=142 Identities=20% Similarity=0.140 Sum_probs=102.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCcee----------eecCC------CCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLS----------IVTNK------PQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~----------~~~~~------~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
.+|+++|++++|||||+++|++.... ...+. .+.|.+.....+.+++..+.++||||+.+.
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df--- 80 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY--- 80 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG---
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh---
Confidence 47999999999999999999732100 01111 166777777778888999999999997542
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhh-HHHHHHHHHh----
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IAKKLEWYEK---- 253 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~~~~~~~~~---- 253 (348)
...+...+..+|++|+|+|+..+.+.+....+.++.. .++| +||++||+|+.+..+ .++....+..
T Consensus 81 ------~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~--~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~ 152 (204)
T d2c78a3 81 ------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ 152 (204)
T ss_dssp ------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 2345566799999999999999999998888888877 6776 677899999976432 2222222222
Q ss_pred ---cCCCCeEEEecCCCC
Q 018949 254 ---FTDVDEVIPVSAKYG 268 (348)
Q Consensus 254 ---~~~~~~i~~vSA~~g 268 (348)
.....+++++||..+
T Consensus 153 ~~~~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 153 YEFPGDEVPVIRGSALLA 170 (204)
T ss_dssp TTSCTTTSCEEECCHHHH
T ss_pred cCCCcccceeeeeechhh
Confidence 123357899988755
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.80 E-value=3e-19 Score=148.06 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.||+++|.+|||||||++++.+.++.... +..+.+..............+.+||++|..... ... ...++.
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~ 74 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR-KSM-------VQHYYR 74 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH-TTT-------HHHHHT
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhc-ccc-------ceeeec
Confidence 48999999999999999999987754322 222223333344445556789999999953211 111 223478
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC---
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY--- 267 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~--- 267 (348)
.+|++++|+|.++.. .....++....+.. ..+.|++||+||+|+.....+ .+....+.+..+. ++++|||++
T Consensus 75 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SAkt~~~ 153 (165)
T d1z06a1 75 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PLFETSAKNPND 153 (165)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEECCSSSGGG
T ss_pred CCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCC-EEEEEecccCCc
Confidence 999999999998754 33444444443322 267899999999998754321 2223344444444 799999997
Q ss_pred CCCHHHHHHHH
Q 018949 268 GHGVEDIRDWI 278 (348)
Q Consensus 268 g~gi~eL~~~i 278 (348)
+.||+++|..|
T Consensus 154 ~~~V~e~F~~l 164 (165)
T d1z06a1 154 NDHVEAIFMTL 164 (165)
T ss_dssp GSCHHHHHHHH
T ss_pred CcCHHHHHHHh
Confidence 45999999876
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=5.2e-19 Score=148.81 Aligned_cols=170 Identities=22% Similarity=0.191 Sum_probs=105.6
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh--hhHHHHHHH
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH--MLDSMMMKN 188 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~l~~~~~~~ 188 (348)
|..+.++|+++|++|||||||+|+|++.+........+++...........+......++++....... .........
T Consensus 12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (188)
T d1puia_ 12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGE 91 (188)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhh
Confidence 455677999999999999999999999887666666666665555555555555555555553221111 111112222
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH----HHHHhcCCCCeEEEec
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKFTDVDEVIPVS 264 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~----~~~~~~~~~~~i~~vS 264 (348)
.......++.++++.+.................. ...++++++||+|+.+........ +.+....+..+++++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vS 169 (188)
T d1puia_ 92 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFS 169 (188)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECB
T ss_pred hhhhhhheeEEEEeecccccchhHHHHHHHHhhh--ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 3334556677778888877776666666655555 678999999999998865544333 3344445566899999
Q ss_pred CCCCCCHHHHHHHHHHhC
Q 018949 265 AKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l 282 (348)
|++|.|+++|++.|.+.+
T Consensus 170 A~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 170 SLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999987653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.7e-19 Score=151.51 Aligned_cols=151 Identities=14% Similarity=0.197 Sum_probs=100.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..||+++|.+|||||||++++++.++.... .++..... ..++...+.+.+|||+|... . .+
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~---~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~--~------------~~ 67 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE---KTESEQYKKEMLVDGQTHLVLIREEAGAPD--A------------KF 67 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCCCCCC---CSSCEEEEEEEEETTEEEEEEEEECSSCCC--H------------HH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCcC---CccceeEEEEeecCceEEEEEEeecccccc--c------------cc
Confidence 458999999999999999999998875322 22222222 23444557899999999532 1 13
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHH---hcccccCCCCEEEEEeccCCCChh--hH-HHHHHHHHhcCCCCeEEEec
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEE---GVGDHKDKLPILLVLNKKDLIKPG--EI-AKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~---~~~~~~~~~p~ivv~NK~Dl~~~~--~~-~~~~~~~~~~~~~~~i~~vS 264 (348)
++.+|++|+|+|.++.. +....+... .......+.|+++|+||.|+.... .+ ......+.......++++||
T Consensus 68 ~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~S 147 (175)
T d2bmja1 68 SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETC 147 (175)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEB
T ss_pred ccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeC
Confidence 56799999999998754 222222222 211222567999999999975322 11 12233343334445899999
Q ss_pred CCCCCCHHHHHHHHHHhC
Q 018949 265 AKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l 282 (348)
|++|.|++++|..+.+.+
T Consensus 148 Ak~~~~v~~~F~~l~~~i 165 (175)
T d2bmja1 148 ATYGLNVDRVFQEVAQKV 165 (175)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999999988755
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=8.8e-19 Score=143.79 Aligned_cols=152 Identities=20% Similarity=0.171 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+||+++|++|||||||+|++.+.++....++.+++. ......+....++|++|... .... ...+...
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~ 67 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS----EELAIGNIKFTTFDLGGHIQ--ARRL-------WKDYFPE 67 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEE----EEECCTTCCEEEEECCCSGG--GGGG-------GGGGCTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeE----EEeccCCeeEEEEeeccchh--hhhh-------Hhhhhhh
Confidence 489999999999999999999988765444444333 34456678899999999532 2222 3344788
Q ss_pred ccEEEEEecCCCCCch--HHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHh----------cCCCCeEEE
Q 018949 196 ADCIVVLVDACKAPER--IDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK----------FTDVDEVIP 262 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~--~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----------~~~~~~i~~ 262 (348)
++.+++++|.++.... ...++...... ...+.|+++++||.|+.......+..+.+.. ....+++++
T Consensus 68 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (166)
T d2qtvb1 68 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFM 147 (166)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEE
T ss_pred eeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEE
Confidence 9999999999875422 22222222221 1267899999999999764333333333221 112247899
Q ss_pred ecCCCCCCHHHHHHHHHH
Q 018949 263 VSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~ 280 (348)
|||++|+|++|++++|.+
T Consensus 148 ~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 148 CSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp EBTTTTBSHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHhC
Confidence 999999999999999865
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.77 E-value=2.8e-18 Score=141.59 Aligned_cols=157 Identities=16% Similarity=0.212 Sum_probs=107.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+.++....+ |..........++..+.++|++|.... .. ......
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~ 70 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIP----TIGFNVETVTYKNLKFQVWDLGGLTSI--RP-------YWRCYY 70 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCC----CSSEEEEEEEETTEEEEEEEECCCGGG--GG-------GGGGGC
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcceec----ccceeeeeeccCceEEEEeeccccccc--cc-------cchhhh
Confidence 45689999999999999999999988753222 333333445567789999999995332 21 122446
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~~ 267 (348)
..++.+++++|..... ......+...... .....|+++|+||.|+.......+...... ......++++|||++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 150 (169)
T d1upta_ 71 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATK 150 (169)
T ss_dssp TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred hhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 7889999999987544 2222222222222 236789999999999986543333333322 122345899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|+|+++++++|.+.+.
T Consensus 151 g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 151 GTGLDEAMEWLVETLK 166 (169)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=3e-18 Score=153.03 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=86.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee-----e------e------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS-----I------V------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~-----~------~------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
+|+|+|+.++|||||+.+++..... . + ....+.|.......+.+++..++++||||+.+....
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e 87 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE 87 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence 7999999999999999998632111 0 1 111123333444557788999999999998764422
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+...+..+|.+|+|+|+.++.+.+.+.+++.++. .++|.++++||+|...
T Consensus 88 ---------~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~--~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 88 ---------VERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTG 137 (276)
T ss_dssp ---------HHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHT--TTCCEEEEEECTTSTT
T ss_pred ---------HHHHHHhhhheEEeccccCCcchhHHHHHHHHHH--cCCCEEEEEecccccc
Confidence 3455689999999999999999999999999888 8999999999999854
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.76 E-value=4.1e-18 Score=142.78 Aligned_cols=157 Identities=21% Similarity=0.245 Sum_probs=100.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..||+++|.+|||||||+++|.+..+....+..+.+.. .+..++..+..+|++|..... .. ....
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~ 77 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE----ELTIAGMTFTTFDLGGHIQAR--RV-------WKNY 77 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE----EEEETTEEEEEEEECC----C--CG-------GGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcceeccccccee----EEEecccccccccccchhhhh--hH-------Hhhh
Confidence 3567999999999999999999999887644433333332 234456778999999853321 11 2244
Q ss_pred ccCccEEEEEecCCCCCchH--HHHHHHhc-ccccCCCCEEEEEeccCCCChhhHHHHHHHHHhc---------------
Q 018949 193 GINADCIVVLVDACKAPERI--DEILEEGV-GDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF--------------- 254 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~--~~~~~~~~-~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~--------------- 254 (348)
...++.+++++|.++..... ...+.... .....+.|+++++||.|+............+...
T Consensus 78 ~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (186)
T d1f6ba_ 78 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELN 157 (186)
T ss_dssp GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCC
T ss_pred hcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhh
Confidence 67899999999987654221 11222222 2223679999999999997644333333333211
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 255 TDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 255 ~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
....++++|||++|+|+++++++|.+.+
T Consensus 158 ~~~~~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 158 ARPLEVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 1123689999999999999999999875
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.74 E-value=7.1e-18 Score=146.62 Aligned_cols=148 Identities=22% Similarity=0.193 Sum_probs=98.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee----------ecCCCC----------------------ceEEeEEEEEeCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI----------VTNKPQ----------------------TTRHRILGICSGPE 162 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~----------~~~~~~----------------------~t~~~~~~~~~~~~ 162 (348)
..+|+++|++++|||||+++|+...... .+...+ .|...........+
T Consensus 9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 88 (222)
T d1zunb3 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 88 (222)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccc
Confidence 3489999999999999999996321110 111111 12222223345567
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCCh
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKP 241 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~ 241 (348)
..+.++||||+.+. ...+...+..+|++|+|+|+..+...+....+.++.. .++| +|+++||+|+.+.
T Consensus 89 ~~~~iiD~PGH~df---------v~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~--~gv~~iiv~vNK~D~~~~ 157 (222)
T d1zunb3 89 RKFIIADTPGHEQY---------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--LGIKHIVVAINKMDLNGF 157 (222)
T ss_dssp EEEEEEECCCSGGG---------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEEECTTTTTS
T ss_pred eEEEEEeccchhhh---------hhhhccccccCceEEEEeccccCcccchHHHHHHHHH--cCCCEEEEEEEccccccc
Confidence 88999999996542 2344455789999999999999998888888887777 6655 7899999999863
Q ss_pred hh--HHHHHH---HHHhcCC----CCeEEEecCCCCCCHHH
Q 018949 242 GE--IAKKLE---WYEKFTD----VDEVIPVSAKYGHGVED 273 (348)
Q Consensus 242 ~~--~~~~~~---~~~~~~~----~~~i~~vSA~~g~gi~e 273 (348)
.+ ...... .+....+ ..+++|+||++|.|+.+
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence 22 222222 2222222 23679999999999843
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.73 E-value=1.5e-17 Score=148.12 Aligned_cols=112 Identities=24% Similarity=0.166 Sum_probs=87.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-----ec------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
+|+|+|+.++|||||+.+|+...... +. ...+.|.......+.+++..++++||||+.+..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~-- 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV-- 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH--
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhh--
Confidence 69999999999999999996321110 10 012334444455677888999999999976533
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
..+...+..+|.+|+|+|+..+.+.+.+.+++.+.. .++|.++++||+|..
T Consensus 82 -------~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~--~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 82 -------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG 132 (267)
T ss_dssp -------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred -------hhhhhhhcccCceEEEeeccCCccchhHHHHHhhhh--ccccccccccccccc
Confidence 345556789999999999999999999999988888 789999999999974
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=6.1e-17 Score=139.03 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=77.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+|+|++|||||||+|+|++.++....++.+++... .......+..+.+||+||.. ... ...+..++..+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~d~~g~~--~~~------~~~~~~~~~~~ 72 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI-YKVNNNRGNSLTLIDLPGHE--SLR------FQLLDRFKSSA 72 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE-EECSSTTCCEEEEEECCCCH--HHH------HHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEE-EEEeeeeeeeeeeeeccccc--ccc------chhhhhhhhhc
Confidence 6999999999999999999998776443333333322 12223457889999999942 211 12234557899
Q ss_pred cEEEEEecCCCCCc---hHHHHHHHhcc---cccCCCCEEEEEeccCCCChh
Q 018949 197 DCIVVLVDACKAPE---RIDEILEEGVG---DHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 197 d~iv~VvD~~~~~~---~~~~~~~~~~~---~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
+.+++|+|+++... ...+++...+. ....++|++||+||+|++...
T Consensus 73 ~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~ 124 (207)
T d2fh5b1 73 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124 (207)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred cccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence 99999999986442 22233333322 222568999999999998643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=1.5e-16 Score=136.21 Aligned_cols=117 Identities=18% Similarity=0.301 Sum_probs=82.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.++|+|+|+||||||||+|+|++.+.. +++|.......+..++..+.+|||||.... . ..+.........
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~-----~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~--~---~~~~~~~~~~~~ 72 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR-----PTVVSQEPLSAADYDGSGVTLVDFPGHVKL--R---YKLSDYLKTRAK 72 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC-----CBCCCSSCEEETTGGGSSCEEEECCCCGGG--T---HHHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-----CeEEecceEEEEEeCCeEEEEEecccccch--h---hHHHHHHHHHhh
Confidence 458999999999999999999987653 456666666667778888999999996432 2 223344455578
Q ss_pred CccEEEEEecCCCCC---chHHHHHHHhc----ccccCCCCEEEEEeccCCCCh
Q 018949 195 NADCIVVLVDACKAP---ERIDEILEEGV----GDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~---~~~~~~~~~~~----~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
.++.+++++|+.... .....++.... .....++|+++|+||+|+...
T Consensus 73 ~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 73 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 126 (209)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred hccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence 889999999987644 22222222111 112268999999999999764
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=1.4e-16 Score=139.84 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=100.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCcee------------------------------eecCCCCceEEeEEEEEeCCCeeE
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQM 165 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~ 165 (348)
.+|+++|+.++|||||+.+|+..... ......+.|.......+.+.+.++
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 86 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 86 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEE
Confidence 48999999999999999998621100 001223455555556677788999
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-------chHHHHHHHhcccccCCCC-EEEEEeccC
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p-~ivv~NK~D 237 (348)
+++||||+.+ |...+...+..+|++|+|+|+..+. ..+....+.+++. .++| +|+++||+|
T Consensus 87 ~iiDtPGH~d---------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~--~gv~~iiv~iNKmD 155 (239)
T d1f60a3 87 TVIDAPGHRD---------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMD 155 (239)
T ss_dssp EEEECCCCTT---------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGG
T ss_pred EEEECCCcHH---------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH--cCCCeEEEEEECCC
Confidence 9999999755 3345667789999999999998752 3455565656555 5666 788999999
Q ss_pred CCChhh--HHHHHHHH----HhcC---CCCeEEEecCCCCCCHHH
Q 018949 238 LIKPGE--IAKKLEWY----EKFT---DVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 238 l~~~~~--~~~~~~~~----~~~~---~~~~i~~vSA~~g~gi~e 273 (348)
+.+.++ ..+....+ .... ...+++++||..|.|+-+
T Consensus 156 ~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 156 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence 976332 22222222 2211 234789999999998754
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.64 E-value=3.5e-16 Score=136.22 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=91.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCcee------------------------------eecCCCCceEEeEEEEEeCCCeeE
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQM 165 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~ 165 (348)
.+|+++|+.++|||||+.+|+..... ......+.|.......+..++..+
T Consensus 4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i 83 (224)
T d1jnya3 4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 83 (224)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCcee
Confidence 48999999999999999998631100 011223344444444566778899
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCc-------hHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~-------~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
+++||||+.+ |...+...+..||++|+|||+..+.. .+....+...+.+ ...++|+++||+|+
T Consensus 84 ~iiDtPGH~d---------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~~~~iIv~iNK~D~ 153 (224)
T d1jnya3 84 TIIDAPGHRD---------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDL 153 (224)
T ss_dssp EECCCSSSTT---------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGG
T ss_pred EEeeCCCcHH---------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-CCCceEEEEEcccC
Confidence 9999999754 23456667899999999999998742 2333333333332 23468899999998
Q ss_pred CChh----hHH---HHHHHHHh----cCCCCeEEEecCCCCCCHHH
Q 018949 239 IKPG----EIA---KKLEWYEK----FTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 239 ~~~~----~~~---~~~~~~~~----~~~~~~i~~vSA~~g~gi~e 273 (348)
.... ... .....+.. .....+++++||.+|.|+.+
T Consensus 154 ~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 154 TEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp SSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred CCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 7421 111 11222222 22345789999999998853
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.64 E-value=6.1e-17 Score=142.86 Aligned_cols=150 Identities=19% Similarity=0.172 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCcee------------------------e------ecCCCCceEEeEEEEEeCCCeeE
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLS------------------------I------VTNKPQTTRHRILGICSGPEYQM 165 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~------------------------~------~~~~~~~t~~~~~~~~~~~~~~~ 165 (348)
.+|+++|+.++|||||+.+|+..... . .....+.|.........+.+..+
T Consensus 25 iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i 104 (245)
T d1r5ba3 25 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 104 (245)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccccee
Confidence 37999999999999999999521100 0 01111223333333455677889
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-------chHHHHHHHhcccccCCCC-EEEEEeccC
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p-~ivv~NK~D 237 (348)
.++||||+.+ +...+......+|++++|+|+..+. ..+....+.++.. .++| +++++||+|
T Consensus 105 ~~iDtPGH~d---------f~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~--~~i~~iiv~iNKmD 173 (245)
T d1r5ba3 105 SLLDAPGHKG---------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMD 173 (245)
T ss_dssp EECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTT
T ss_pred eeeccccccc---------chhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH--cCCCeEEEEEEcCC
Confidence 9999999644 2344556678999999999998864 2244455555555 4554 789999999
Q ss_pred CCChh----hHHHHHHHHH----hcCC-----CCeEEEecCCCCCCHHHHHH
Q 018949 238 LIKPG----EIAKKLEWYE----KFTD-----VDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 238 l~~~~----~~~~~~~~~~----~~~~-----~~~i~~vSA~~g~gi~eL~~ 276 (348)
++... ...+....+. ...+ ..+++|+||++|+|+.++.+
T Consensus 174 ~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 174 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 97421 1222222222 2211 23789999999999977554
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=1.3e-15 Score=143.57 Aligned_cols=161 Identities=17% Similarity=0.163 Sum_probs=104.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCce----eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKL----SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~----~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+.+|+|+|.+|||||||+|+|+|... ...+...+||+...... ..+...+.+|||||+..... .....+ ..
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~-~~~~~~---~~ 130 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNF-PPDTYL---EK 130 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSC-CHHHHH---HH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeEEEEeCCCcccccc-cHHHHH---HH
Confidence 34899999999999999999998542 22334455666554433 23445689999999865332 222222 12
Q ss_pred hhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh-------------hHHHH----HHHHHh
Q 018949 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-------------EIAKK----LEWYEK 253 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-------------~~~~~----~~~~~~ 253 (348)
.....+|+++++.|. .....+..+...++. .++|+++|+||+|..... .+... ...+..
T Consensus 131 ~~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~--~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~ 206 (400)
T d1tq4a_ 131 MKFYEYDFFIIISAT--RFKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 206 (400)
T ss_dssp TTGGGCSEEEEEESS--CCCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcceEEEEecCC--CCCHHHHHHHHHHHH--cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence 236678988888775 455666677777777 689999999999963111 11111 222222
Q ss_pred c-CCCCeEEEecCCC--CCCHHHHHHHHHHhCCC
Q 018949 254 F-TDVDEVIPVSAKY--GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 254 ~-~~~~~i~~vSA~~--g~gi~eL~~~i~~~l~~ 284 (348)
. ....+++.+|... ..|+.+|.+.+.+.++.
T Consensus 207 ~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 207 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence 2 2344789998765 45999999999998875
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.63 E-value=1e-15 Score=135.95 Aligned_cols=126 Identities=19% Similarity=0.307 Sum_probs=90.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH--h
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR--S 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~--~ 191 (348)
...+|+++|.+|+|||||+|+|+|.+...++..+++|+.........++..+.++||||+.+.... ......... .
T Consensus 31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~--~~~~~~~i~~~~ 108 (257)
T d1h65a_ 31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI--NDMALNIIKSFL 108 (257)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE--CHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcch--HHHHHHHHHHHH
Confidence 445899999999999999999999998888888899998888888888999999999998653221 111112221 2
Q ss_pred hccCccEEEEEecCCCC-CchHHHHHHHhccc-cc--CCCCEEEEEeccCCCCh
Q 018949 192 AGINADCIVVLVDACKA-PERIDEILEEGVGD-HK--DKLPILLVLNKKDLIKP 241 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~-~~~~~~~~~~~~~~-~~--~~~p~ivv~NK~Dl~~~ 241 (348)
.....|+++||++.+.. ....+......+.. ++ ...++|||+||+|...+
T Consensus 109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~ 162 (257)
T d1h65a_ 109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 162 (257)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCc
Confidence 23567889999887654 34433333332222 11 23578999999999764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=8.9e-16 Score=129.58 Aligned_cols=151 Identities=16% Similarity=0.112 Sum_probs=99.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..||+++|..|||||||++++...++. +. ......+......+.+|||+| +..+..+ +..++.
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~~----t~----~~~~~~~~~~~~~~~i~D~~G--q~~~~~~-------~~~~~~ 64 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHEA----GT----GIVETHFTFKDLHFKMFDVGG--QRSERKK-------WIHCFE 64 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHSC----CC----SEEEEEEEETTEEEEEEEECC--SGGGGGG-------GGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC----Cc----cEEEEEEEeeeeeeeeecccc--ccccccc-------hhhccc
Confidence 458999999999999999999765442 11 123344567788999999999 5555444 335689
Q ss_pred CccEEEEEecCCCCC---------c---hHHHHHHHhccc-ccCCCCEEEEEeccCCCCh-----------------hhH
Q 018949 195 NADCIVVLVDACKAP---------E---RIDEILEEGVGD-HKDKLPILLVLNKKDLIKP-----------------GEI 244 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~---------~---~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~-----------------~~~ 244 (348)
.++++++|+|.++.. . .....+...+.. ...+.|+++++||+|+... ...
T Consensus 65 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~ 144 (195)
T d1svsa1 65 GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTY 144 (195)
T ss_dssp TCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSH
T ss_pred CCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccH
Confidence 999999999986432 1 112223333322 2367899999999996211 011
Q ss_pred HH----HHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 245 AK----KLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 245 ~~----~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.. ....+.... ....+++|||++|.||+++|+.+.+.+
T Consensus 145 ~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i 191 (195)
T d1svsa1 145 EEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191 (195)
T ss_dssp HHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence 11 112222211 223567899999999999999887654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=1.1e-15 Score=129.63 Aligned_cols=154 Identities=17% Similarity=0.067 Sum_probs=101.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..||+++|..|||||||++++....+.. .++ .......+......+.+||++|. ..+... +..++.
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~~~-~pT----iG~~~~~~~~~~~~~~~~d~~g~--~~~~~~-------~~~~~~ 67 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHGSG-VPT----TGIIEYPFDLQSVIFRMVDVGGQ--RSERRK-------WIHCFE 67 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTSSC-CCC----CSCEEEEEECSSCEEEEEECCCS--TTGGGG-------GGGGCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCC-Cce----eeEEEEEEeccceeeeecccccc--cccccc-------cccccc
Confidence 4589999999999999999998766532 222 22233445677889999999994 343333 335588
Q ss_pred CccEEEEEecCCCCC------------chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhh------------------
Q 018949 195 NADCIVVLVDACKAP------------ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE------------------ 243 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~------------~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~------------------ 243 (348)
.++.+++++|.++.. .+....+...+.. ...+.|+++++||+|+.....
T Consensus 68 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (200)
T d2bcjq2 68 NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRD 147 (200)
T ss_dssp SCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSC
T ss_pred ccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchh
Confidence 999999999987532 1112334333332 236899999999999742110
Q ss_pred H---HH-HHHHHHhc----CCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 244 I---AK-KLEWYEKF----TDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 244 ~---~~-~~~~~~~~----~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
. .. ....+... .....++++||++|.|++++|+.|.+.+
T Consensus 148 ~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I 194 (200)
T d2bcjq2 148 AQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 194 (200)
T ss_dssp HHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence 0 11 11112111 1223468899999999999999987654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.55 E-value=6.2e-15 Score=125.06 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=95.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..||+++|.+|||||||++++. +. ..... |.......+..+...+.+||++|. .... ..+..+++
T Consensus 2 ~iKivllG~~~vGKTsll~r~~---f~--~~~~p-TiG~~~~~~~~~~~~~~~~D~~gq--~~~~-------~~~~~~~~ 66 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMR---II--HGQDP-TKGIHEYDFEIKNVPFKMVDVGGQ--RSER-------KRWFECFD 66 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH---HH--HSCCC-CSSEEEEEEEETTEEEEEEEECC----------------CTTSCT
T ss_pred eEEEEEECCCCCCHHHHHHHHh---cC--CCCCC-eeeeEEEEEeeeeeeeeeecccce--eeec-------cccccccc
Confidence 3589999999999999999993 21 11222 222334456778899999999994 3222 22345678
Q ss_pred CccEEEEEecCCCCC---------c---hHHHHHHHhccc-ccCCCCEEEEEeccCCCCh------------------h-
Q 018949 195 NADCIVVLVDACKAP---------E---RIDEILEEGVGD-HKDKLPILLVLNKKDLIKP------------------G- 242 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~---------~---~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~------------------~- 242 (348)
.++++++++|.++.. . ....++...+.. ...+.|+++++||+|+... .
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~ 146 (200)
T d1zcba2 67 SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC 146 (200)
T ss_dssp TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTC
T ss_pred ccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcch
Confidence 999999999998643 1 112223333322 2368999999999997421 0
Q ss_pred --hHHH-HHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 243 --EIAK-KLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 243 --~~~~-~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
...+ ....+.... ....++.+||+++.||+++|+.+.+.+
T Consensus 147 ~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i 194 (200)
T d1zcba2 147 LRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 194 (200)
T ss_dssp HHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHH
Confidence 1111 122222211 112356799999999999999887643
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=4.8e-15 Score=135.57 Aligned_cols=183 Identities=21% Similarity=0.278 Sum_probs=104.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCceEEe--------------------EEEE----------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR--------------------ILGI---------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~--------------------~~~~---------- 157 (348)
+..+|+|.|+||||||||+++|. |.+++.++..|.++... ....
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~ 132 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 132 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccch
Confidence 45689999999999999999996 55666555444433211 0000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCC
Q 018949 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDK 226 (348)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~ 226 (348)
+...++.+.++.|.|..+... .....+|.+++|++...+. +....-+.+
T Consensus 133 ~~~~~~~~~~~~~g~d~iliEtvG~gq~e~------------~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e-------- 192 (327)
T d2p67a1 133 QRARELMLLCEAAGYDVVIVETVGVGQSET------------EVARMVDCFISLQIAGGGDDLQGIKKGLME-------- 192 (327)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHH------------HHHTTCSEEEEEECC------CCCCHHHHH--------
T ss_pred hhhhHHHHHHHhcCCCeEEEeeccccccch------------hhhhccceEEEEecCCCchhhhhhchhhhc--------
Confidence 111234678888888665321 1246899999999876554 222222322
Q ss_pred CCEEEEEeccCCCChhhHHHHHHHHHh----c-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCC
Q 018949 227 LPILLVLNKKDLIKPGEIAKKLEWYEK----F-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEH 297 (348)
Q Consensus 227 ~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~ 297 (348)
.+-++|+||+|+............+.. . ....|++.|||.+|+|+++|++.|.+..........-......
T Consensus 193 ~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~~sG~l~~rR~~ 272 (327)
T d2p67a1 193 VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQVRQQ 272 (327)
T ss_dssp HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 234899999999876544332222221 1 1224799999999999999999998754310000000011122
Q ss_pred chHHHHHHHHHHHHHhhcc
Q 018949 298 PERFFVGEIIREKIFMQYR 316 (348)
Q Consensus 298 ~~~~~~~e~ire~~~~~~~ 316 (348)
....|+.+.+++.+...+.
T Consensus 273 Q~~~~~~~~I~e~L~~~~~ 291 (327)
T d2p67a1 273 QSVEWLRKQTEEEVLNHLF 291 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344666666666655433
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.53 E-value=3.2e-14 Score=124.19 Aligned_cols=161 Identities=20% Similarity=0.189 Sum_probs=96.3
Q ss_pred EEEEEcCCCCChHHHHHHHh-----CCceeeecCCCCceEEeEEEEEe--------------------------------
Q 018949 117 YVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTTRHRILGICS-------------------------------- 159 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~-----~~~~~~~~~~~~~t~~~~~~~~~-------------------------------- 159 (348)
.|+|+|++|+|||||+++|+ +.+...+...++++........+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKF 81 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTTH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhhhccCCchhhhhHhHHhhH
Confidence 58999999999999999996 23344444444433221100000
Q ss_pred ----------CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhc---ccccCC
Q 018949 160 ----------GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGV---GDHKDK 226 (348)
Q Consensus 160 ----------~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~---~~~~~~ 226 (348)
.....+.++|+||+.+.... .... ..... ....+++++++|+............... ......
T Consensus 82 ~~~~~~~~~~~~~~~~~~id~~g~~~~~~~--~~~~-~~~~~-~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (244)
T d1yrba1 82 NEYLNKILRLEKENDYVLIDTPGQMETFLF--HEFG-VRLME-NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLG 157 (244)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCSSHHHHHH--SHHH-HHHHH-TSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccceeeeccccchhHHHH--HHHH-HHHHh-hccCceEEEEeccccccCchhHhhHHHHHHHHHHHhC
Confidence 01235999999997542211 1111 11111 2456789999999766644332221111 111146
Q ss_pred CCEEEEEeccCCCChhhHHHHHH----------------------------HHHhcCCCCeEEEecCCCCCCHHHHHHHH
Q 018949 227 LPILLVLNKKDLIKPGEIAKKLE----------------------------WYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278 (348)
Q Consensus 227 ~p~ivv~NK~Dl~~~~~~~~~~~----------------------------~~~~~~~~~~i~~vSA~~g~gi~eL~~~i 278 (348)
.|.++|+||+|+....+...... .........+++++||++|+|+++|+..|
T Consensus 158 ~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l 237 (244)
T d1yrba1 158 ATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 237 (244)
T ss_dssp SCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHH
T ss_pred CCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHH
Confidence 89999999999997654322111 11123345689999999999999999998
Q ss_pred HHh
Q 018949 279 LTK 281 (348)
Q Consensus 279 ~~~ 281 (348)
.+.
T Consensus 238 ~e~ 240 (244)
T d1yrba1 238 YEH 240 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.45 E-value=3e-14 Score=130.07 Aligned_cols=187 Identities=20% Similarity=0.238 Sum_probs=109.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCceEE--------------------eEEE-----------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRH--------------------RILG----------- 156 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~--------------------~~~~----------- 156 (348)
+..+|+|.|+||+|||||+++|. |.++..+...|.++.. ....
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~ 129 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 129 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchh
Confidence 55689999999999999999986 3444443333322210 0000
Q ss_pred --------EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC
Q 018949 157 --------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (348)
Q Consensus 157 --------~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (348)
.+...++.+.++.|.|..+.... ....+|..++|+....+..-+. .+.--...+
T Consensus 130 ~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~------------~~~~~D~~v~v~~p~~GD~iQ~------~k~gilE~a 191 (323)
T d2qm8a1 130 AKTRETMLLCEAAGFDVILVETVGVGQSETA------------VADLTDFFLVLMLPGAGDELQG------IKKGIFELA 191 (323)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHHH------------HHTTSSEEEEEECSCC------------CCTTHHHHC
T ss_pred HHHHHHHHhhccCCCCeEEEeehhhhhhhhh------------hhcccceEEEEeeccchhhhhh------hhhhHhhhh
Confidence 01223467899999997663211 1357999999999876643211 000001234
Q ss_pred EEEEEeccCCCChhhHHHHH-HHHHh----c-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCc
Q 018949 229 ILLVLNKKDLIKPGEIAKKL-EWYEK----F-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHP 298 (348)
Q Consensus 229 ~ivv~NK~Dl~~~~~~~~~~-~~~~~----~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~ 298 (348)
-++|+||+|+.......... ..+.. . ....+++.+||++|+|+++|+++|.+..........-+......
T Consensus 192 Di~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~G~l~~rR~~q 271 (323)
T d2qm8a1 192 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQ 271 (323)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred heeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 59999999988755432221 11211 1 12347999999999999999999987543210000001112234
Q ss_pred hHHHHHHHHHHHHHhhccCC
Q 018949 299 ERFFVGEIIREKIFMQYRNE 318 (348)
Q Consensus 299 ~~~~~~e~ire~~~~~~~~e 318 (348)
.+.|+.+.+++.+.+.+.+.
T Consensus 272 ~~~w~~~~V~e~L~~~~~~~ 291 (323)
T d2qm8a1 272 DVKWMWALVHERLHQRLVGS 291 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 55678888888887766653
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.7e-13 Score=125.59 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=79.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec---------------CCCCceEEeEEEEE----------------eCCCeeE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGIC----------------SGPEYQM 165 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~---------------~~~~~t~~~~~~~~----------------~~~~~~~ 165 (348)
+|+|+|+.++|||||+.+|+........ ...+.|.......+ ..+.+.+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 98 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 98 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence 6999999999999999999732111100 00111111111111 2245679
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
+++||||+.+.. .++...++.+|++|+|||+..+...+.+.+++.+.. .+.|+++|+||+|..
T Consensus 99 nliDtPGh~dF~---------~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~--~~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 99 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 161 (341)
T ss_dssp EEECCCCCCSSC---------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred EEEcCCCcHHHH---------HHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH--cCCCeEEEEECcccc
Confidence 999999976643 334455788999999999999999999888888777 789999999999974
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.40 E-value=1.5e-13 Score=124.23 Aligned_cols=89 Identities=24% Similarity=0.248 Sum_probs=70.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 177 (348)
..+|||+|.||||||||+|++++...+.++++|+||.++..+++...+ ..+.++|.||++...
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA 89 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 89 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence 348999999999999999999987765578999999998887765432 368999999997654
Q ss_pred hh--hhHHHHHHHHHhhccCccEEEEEecCCC
Q 018949 178 IH--MLDSMMMKNVRSAGINADCIVVLVDACK 207 (348)
Q Consensus 178 ~~--~l~~~~~~~~~~~~~~ad~iv~VvD~~~ 207 (348)
.. .+.. .++..++.||++++|||+..
T Consensus 90 ~~g~GLGn----~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 90 STGVGLGN----AFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CSSSSSCH----HHHHHHTTCSEEEEEEECCC
T ss_pred ccccccHH----HHHHHhhccceeEEEEeccC
Confidence 32 2333 34556799999999999864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.39 E-value=2.5e-13 Score=117.51 Aligned_cols=110 Identities=17% Similarity=0.203 Sum_probs=74.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..||+++|..|||||||++++...++. ++.| .....+..++..+.+||++|. ...... +..++.
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~---pTiG----~~~~~~~~~~~~~~~~D~~Gq--~~~r~~-------w~~~~~ 69 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVV---LTSG----IFETKFQVDKVNFHMFDVGGQ--RDERRK-------WIQCFN 69 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCC---CCCS----CEEEEEEETTEEEEEEECCCS--TTTTTG-------GGGGCT
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCcC---CCCC----eEEEEEEECcEEEEEEecCcc--ceeccc-------hhhhcc
Confidence 348999999999999999999654432 2333 223345667899999999994 333322 345588
Q ss_pred CccEEEEEecCCCCC---------chH---HHHHHHhccc-ccCCCCEEEEEeccCCCC
Q 018949 195 NADCIVVLVDACKAP---------ERI---DEILEEGVGD-HKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~---------~~~---~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~ 240 (348)
.++++++|+|.+... ... ...+...+.. ...++|++|++||+|+..
T Consensus 70 ~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~ 128 (221)
T d1azta2 70 DVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 128 (221)
T ss_dssp TCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred cccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence 999999999987421 111 2223333333 126799999999999853
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.27 E-value=1.3e-12 Score=119.11 Aligned_cols=88 Identities=24% Similarity=0.264 Sum_probs=49.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe------------------------CCCeeEEEEeCCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------------GPEYQMILYDTPG 172 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~l~DtpG 172 (348)
+|+++|.||||||||+|+|++.+.. +.++|+||.++..++.. ....++.++|+||
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~-v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVE-IANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred cEeEECCCCCCHHHHHHHHHCCCCc-hhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 6999999999999999999998764 78999999887666532 1124699999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCC
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK 207 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~ 207 (348)
+.... +.+......+...++.+|++++|+|+..
T Consensus 81 li~ga--~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGA--HEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTC
T ss_pred cccch--hcccchHHHHHHhhccceEEEEEecccc
Confidence 87643 2233444556677899999999999863
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.26 E-value=1.5e-12 Score=116.58 Aligned_cols=88 Identities=24% Similarity=0.267 Sum_probs=64.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 178 (348)
.+|||||.||||||||+|++++.+.. ..++|+||..+..+++...+ ..+.++|.||++....
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~-~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIE-AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCc-cccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 38999999999999999999998765 68999999998888876543 2488999999987543
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
.+ ..+...+++.+++||++++|||+.
T Consensus 82 ~g--~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KG--EGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HH--GGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cC--CCccHHHHHHHHhccceEEEeecc
Confidence 21 112234566689999999999874
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=8e-11 Score=105.91 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=78.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE-E----------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI-C---------------------------------- 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~-~---------------------------------- 158 (348)
..|+|+|+|..++|||||+|+|+|..+.++...+.| +.+.... .
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT-RRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSC-SSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccc-cCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHh
Confidence 345899999999999999999999887655444433 2111110 0
Q ss_pred -----------------eCCCeeEEEEeCCCCchhhh----hhhHHHHHHHHHhhccCcc-EEEEEecCCCCCchH-HHH
Q 018949 159 -----------------SGPEYQMILYDTPGIIEKKI----HMLDSMMMKNVRSAGINAD-CIVVLVDACKAPERI-DEI 215 (348)
Q Consensus 159 -----------------~~~~~~~~l~DtpG~~~~~~----~~l~~~~~~~~~~~~~~ad-~iv~VvD~~~~~~~~-~~~ 215 (348)
...-..+.++||||+..... ..........+..|+..++ ++++|.++....... ...
T Consensus 104 ~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~ 183 (299)
T d2akab1 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred hCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH
Confidence 00112489999999865321 1222333455666677776 455666666555332 234
Q ss_pred HHHhcccccCCCCEEEEEeccCCCChh
Q 018949 216 LEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 216 ~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
+.+.+.. ...++++|+||+|.....
T Consensus 184 ~~~~~~~--~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 184 IAKEVDP--QGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTT
T ss_pred HHHHhCc--CCCceeeEEeccccccch
Confidence 4444444 557899999999998653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.17 E-value=1.1e-10 Score=105.45 Aligned_cols=127 Identities=21% Similarity=0.250 Sum_probs=73.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE------------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI------------------------------------ 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 157 (348)
..|+|+|+|..++|||||+|+|+|..+.++...+.|........
T Consensus 23 ~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (306)
T d1jwyb_ 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (306)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHH
Confidence 34589999999999999999999988755444433321111100
Q ss_pred -----------------------EeCCCeeEEEEeCCCCchhhhh----hhHHHHHHHHHhhccCccEEEEE-ecCCCCC
Q 018949 158 -----------------------CSGPEYQMILYDTPGIIEKKIH----MLDSMMMKNVRSAGINADCIVVL-VDACKAP 209 (348)
Q Consensus 158 -----------------------~~~~~~~~~l~DtpG~~~~~~~----~l~~~~~~~~~~~~~~ad~iv~V-vD~~~~~ 209 (348)
....-..+.++||||+...... .........+..|+..++.++++ +++....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~ 182 (306)
T d1jwyb_ 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (306)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence 0001125889999998653221 22333445566778888875554 5555444
Q ss_pred -chHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 210 -ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 210 -~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
......+.+.+.. ...++++|+||+|.....
T Consensus 183 ~~~~~~~~~~~~~~--~~~r~i~Vitk~D~~~~~ 214 (306)
T d1jwyb_ 183 ANSDALQLAKEVDP--EGKRTIGVITKLDLMDKG 214 (306)
T ss_dssp TTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSS
T ss_pred cccHHHHHHHHhCc--CCCeEEEEEeccccccch
Confidence 2223334444443 457899999999987543
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.03 E-value=1.7e-10 Score=102.50 Aligned_cols=60 Identities=30% Similarity=0.459 Sum_probs=40.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|.||||||||+|+|.+.+...+++.||+|++.+..... ..+.++||||+...
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~---~~~~l~DTPGi~~p 170 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG---KELELLDTPGILWP 170 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET---TTEEEEECCCCCCS
T ss_pred CceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECC---CCeEEecCCCcccc
Confidence 5568999999999999999999999998999999999987654432 34999999998653
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.46 E-value=2.4e-07 Score=81.69 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=70.8
Q ss_pred HHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCC
Q 018949 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
+.....+..+|+|++|+|+..+.......+.+.++ ++|+|+|+||+|+.+..........+.... .+++++|+.
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~----~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~--~~~i~isa~ 80 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKADAAVTQQWKEHFENQG--IRSLSINSV 80 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS----SSCEEEEEECGGGSCHHHHHHHHHHHHTTT--CCEEECCTT
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc----CCCeEEEEECccCCchHHHHHHHHHHHhcC--Cccceeecc
Confidence 45566789999999999999888766666766663 589999999999998877766666665443 367999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
++.|...+...+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~l 96 (273)
T d1puja_ 81 NGQGLNQIVPASKEIL 96 (273)
T ss_dssp TCTTGGGHHHHHHHHH
T ss_pred cCCCccccchhhhhhh
Confidence 9999988877765543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.43 E-value=9.3e-07 Score=74.52 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=74.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce-------------EEeEEEE----------------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGI---------------- 157 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t-------------~~~~~~~---------------- 157 (348)
.++..|+++|++||||||.+-+|. |.++..++.....- .......
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~ 89 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 89 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence 345578999999999999988764 23333222211100 0000000
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 158 ~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
....+..+.++||||..+.........-+..+... ...+-+++|+|++.+...... ....... .+ +--+++||.|
T Consensus 90 ~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~-~~~~~~~LVl~a~~~~~~~~~-~~~~~~~--~~-~~~lI~TKlD 164 (211)
T d1j8yf2 90 FLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEA-IKPDEVTLVIDASIGQKAYDL-ASKFNQA--SK-IGTIIITKMD 164 (211)
T ss_dssp HHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHH-HCCSEEEEEEEGGGGGGHHHH-HHHHHHH--CT-TEEEEEECTT
T ss_pred hhccCCceEEEecCCcCccchhhHHHHHHHHHHhh-cCCceEEEEEecccCcchHHH-Hhhhhcc--cC-cceEEEeccc
Confidence 01234579999999963321111111111222222 246788999999876655433 2323333 22 2346799999
Q ss_pred CCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
.... .-..+..... .+ .|+..+| +|+++++|
T Consensus 165 et~~--~G~~l~~~~~-~~-lPi~~it--~Gq~v~DL 195 (211)
T d1j8yf2 165 GTAK--GGGALSAVAA-TG-ATIKFIG--TGEKIDEL 195 (211)
T ss_dssp SCSC--HHHHHHHHHT-TT-CCEEEEE--CSSSTTCE
T ss_pred CCCc--ccHHHHHHHH-HC-cCEEEEe--CCCCcccC
Confidence 7643 2223333322 22 3677666 57777553
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=1e-06 Score=75.07 Aligned_cols=149 Identities=18% Similarity=0.275 Sum_probs=79.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC----ceeeecCCCCc-eEEeE---------EEE-----Ee-----------------
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQT-TRHRI---------LGI-----CS----------------- 159 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~----~~~~~~~~~~~-t~~~~---------~~~-----~~----------------- 159 (348)
+..+|.|..|+|||||+++++.. +.+...+..+. ..+.. ... +.
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~~~iD~~~~~~~~~~~~el~~gcicc~~~~~~~~~l~~~~~~~ 83 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 83 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEecccchhhhhhhhcccccceEEecCCcceeccchhHHHHHHHHHHHH
Confidence 46889999999999999998743 23322222221 11110 000 00
Q ss_pred ---CCCeeEEEEeCCCCchhhhhhhHHHH-HHHHHhhccCccEEEEEecCCCCCchHH--HHHHHhcccccCCCCEEEEE
Q 018949 160 ---GPEYQMILYDTPGIIEKKIHMLDSMM-MKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVL 233 (348)
Q Consensus 160 ---~~~~~~~l~DtpG~~~~~~~~l~~~~-~~~~~~~~~~ad~iv~VvD~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~ 233 (348)
.......++.|.|..+.. .+-..+ ........-..+.+|.|+|+........ ..+..++.. .=++|+
T Consensus 84 ~~~~~~~d~iiIE~sG~~~p~--~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~-----AD~ivl 156 (222)
T d1nija1 84 DKGNIQFDRLVIECTGMADPG--PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-----ADRILL 156 (222)
T ss_dssp HHTSCCCSEEEEEEETTCCHH--HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHT-----CSEEEE
T ss_pred hhccCCcceeEEeecccchhh--HHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHh-----CCcccc
Confidence 011345788888865422 111111 1111222335688999999976543221 122222322 227899
Q ss_pred eccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 234 NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
||+|+.+.. +.....++...+..+++.+| .....++.|
T Consensus 157 NK~Dl~~~~--~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~l 194 (222)
T d1nija1 157 TKTDVAGEA--EKLHERLARINARAPVYTVT-HGDIDLGLL 194 (222)
T ss_dssp ECTTTCSCT--HHHHHHHHHHCSSSCEEECC-SSCCCGGGG
T ss_pred cccccccHH--HHHHHHHHHHhCCCeEEEee-CCccCHHHh
Confidence 999998643 33455566666666787654 223344444
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.40 E-value=1e-07 Score=81.16 Aligned_cols=58 Identities=26% Similarity=0.168 Sum_probs=37.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee---ec----CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI---VT----NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~---~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
...+++|++|||||||+|+|.+..... ++ ...+||.......+..+ -.++||||+.+.
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~ 160 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL 160 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence 378999999999999999998764322 12 22345555544444333 478999998543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.30 E-value=1.2e-06 Score=74.45 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=62.3
Q ss_pred ccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
..+.|.+++|+.+..+.. .....++-.... .++|.+||+||+||.+..+...............+++.+||+++.|
T Consensus 8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g 85 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMG 85 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchh
Confidence 468899999998876542 222223333334 7899999999999998776655555555444446899999999999
Q ss_pred HHHHHHHHHH
Q 018949 271 VEDIRDWILT 280 (348)
Q Consensus 271 i~eL~~~i~~ 280 (348)
+++|...+..
T Consensus 86 ~~~L~~~l~~ 95 (225)
T d1u0la2 86 IEELKEYLKG 95 (225)
T ss_dssp HHHHHHHHSS
T ss_pred HhhHHHHhcC
Confidence 9999988753
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=3.9e-06 Score=70.51 Aligned_cols=147 Identities=15% Similarity=0.227 Sum_probs=76.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce-------------EEeEEEE----------------Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGI----------------CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t-------------~~~~~~~----------------~~ 159 (348)
+..|+++|++||||||.+-+|. +.++..++...... ....... ..
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~ 88 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAK 88 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHH
Confidence 3468899999999999998874 22333222111000 0000000 00
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc-----CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEe
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI-----NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~-----~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 234 (348)
..+..+.++||||..+.....+... ........ ..+-+++|+|++.+......... .... . -+-=+++|
T Consensus 89 ~~~~d~ilIDTaGr~~~d~~~~~el--~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~--~-~~~~lIlT 162 (211)
T d2qy9a2 89 ARNIDVLIADTAGRLQNKSHLMEEL--KKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL-FHEA--V-GLTGITLT 162 (211)
T ss_dssp HTTCSEEEECCCCCGGGHHHHHHHH--HHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHH-HHHH--S-CCCEEEEE
T ss_pred HcCCCEEEeccCCCccccHHHHHHH--HHHHHHHhhhcccCcceeeeehhcccCcchHHHHhh-hhhc--c-CCceEEEe
Confidence 1345789999999644332222221 11222222 24688999999877655443322 2222 1 23357899
Q ss_pred ccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 235 K~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
|.|-...- -..+...... + .|+..++ +|+++++
T Consensus 163 KlDe~~~~--G~~l~~~~~~-~-~Pi~~i~--~Gq~v~D 195 (211)
T d2qy9a2 163 KLDGTAKG--GVIFSVADQF-G-IPIRYIG--VGERIED 195 (211)
T ss_dssp CCTTCTTT--THHHHHHHHH-C-CCEEEEE--CSSSGGG
T ss_pred ecCCCCCc--cHHHHHHHHH-C-CCEEEEe--CCCCccc
Confidence 99976432 1122222222 2 2677776 6777754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.14 E-value=2.4e-07 Score=79.10 Aligned_cols=56 Identities=29% Similarity=0.294 Sum_probs=32.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee---ecCCC----CceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI---VTNKP----QTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~---~~~~~----~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
..+++|++|||||||+|+|.+..... ++... +||........ ++ =.++||||+.+.
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~--~g--g~iiDTPG~r~~ 161 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT--SG--GLVADTPGFSSL 161 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE--TT--EEEESSCSCSSC
T ss_pred eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEec--CC--CEEEECCccccc
Confidence 67899999999999999999864322 22221 34444332222 22 258899998553
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.05 E-value=8.7e-06 Score=68.48 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=76.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCc---e--------EEeEEEEE-----------------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT---T--------RHRILGIC----------------- 158 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~---t--------~~~~~~~~----------------- 158 (348)
.++..|+++|++||||||.+-+|. +.++..++..... . ........
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~ 88 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 88 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHHH
Confidence 344578999999999999987764 2232222111100 0 00000000
Q ss_pred -eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc-----CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEE
Q 018949 159 -SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI-----NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLV 232 (348)
Q Consensus 159 -~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~-----~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv 232 (348)
..++..++|+||||..+.....+... ........ ..+-+++|+|++.+......... ..+. . -+-=++
T Consensus 89 ~~~~~~d~ilIDTaGr~~~d~~~~~el--~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~--~-~~~~lI 162 (213)
T d1vmaa2 89 ALARNKDVVIIDTAGRLHTKKNLMEEL--RKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKI-FKEA--V-NVTGII 162 (213)
T ss_dssp HHHTTCSEEEEEECCCCSCHHHHHHHH--HHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHH-HHHH--S-CCCEEE
T ss_pred HHHcCCCEEEEeccccccchHHHHHHH--HHHHhhhhhccccccceeEEeeccccCcchhhhhhh-hccc--c-CCceEE
Confidence 01245799999999644332222211 11212221 25678999999766544433322 2222 1 233578
Q ss_pred EeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 233 LNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 233 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
+||.|....- -..+...... + .|+..++ +|+++++|
T Consensus 163 ~TKlDe~~~~--G~~l~~~~~~-~-~Pi~~i~--~Gq~v~Dl 198 (213)
T d1vmaa2 163 LTKLDGTAKG--GITLAIAREL-G-IPIKFIG--VGEKAEDL 198 (213)
T ss_dssp EECGGGCSCT--THHHHHHHHH-C-CCEEEEE--CSSSGGGE
T ss_pred EecccCCCcc--cHHHHHHHHH-C-CCEEEEe--CCCCcccC
Confidence 9999975321 1122222222 1 2677766 67777553
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.02 E-value=1.7e-05 Score=66.31 Aligned_cols=123 Identities=16% Similarity=0.235 Sum_probs=64.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCC---Cce----------EEeEEEEE----------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP---QTT----------RHRILGIC---------------- 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~---~~t----------~~~~~~~~---------------- 158 (348)
++..|+++|++||||||.+-+|. |.++..++... +.. ........
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~ 84 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM 84 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHH
Confidence 34478999999999999987763 33333222111 100 00000000
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHH--HHHHHHhh-ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEec
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSM--MMKNVRSA-GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~--~~~~~~~~-~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 235 (348)
...+..+.++||||..+.....+... +.+..... ....+-+++|+|++.+......... ..... + +-=+++||
T Consensus 85 ~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~-~~~~~--~-~~~lI~TK 160 (207)
T d1okkd2 85 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKK-FHEAV--G-LTGVIVTK 160 (207)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHH-HHHHH--C-CSEEEEEC
T ss_pred HHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHH-hhhcc--C-CceEEEec
Confidence 01245799999999654332222211 11111111 1245778999999887755444332 22221 1 22578999
Q ss_pred cCCCC
Q 018949 236 KDLIK 240 (348)
Q Consensus 236 ~Dl~~ 240 (348)
.|...
T Consensus 161 lDet~ 165 (207)
T d1okkd2 161 LDGTA 165 (207)
T ss_dssp TTSSC
T ss_pred cCCCC
Confidence 99754
|
| >d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Prokaryotic type KH domain (KH-domain type II) family: Prokaryotic type KH domain (KH-domain type II) domain: GTPase Era C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=5.3e-06 Score=62.45 Aligned_cols=52 Identities=29% Similarity=0.431 Sum_probs=44.5
Q ss_pred cccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEecc-ceEEEeeec
Q 018949 292 DIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWL-IFVEFNAFL 343 (348)
Q Consensus 292 ~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~~-~~~~~~~~~ 343 (348)
|.+|+.+.+++++|++||+++..+++|+||++.+.++.|.... +.++|++-+
T Consensus 1 D~~Td~~~~~~i~EiIRE~il~~l~~EiPY~~~v~i~~~~~~~~~~~~I~a~I 53 (113)
T d1egaa2 1 DYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLI 53 (113)
T ss_dssp TCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEE
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhcccccCeEEEEEEEEEeecccceEEEEEEE
Confidence 4578999999999999999999999999999999999998754 356666543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.83 E-value=6e-05 Score=62.95 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=63.3
Q ss_pred EEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce-------------EEeEEEEE----------------eCC
Q 018949 117 YVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGIC----------------SGP 161 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t-------------~~~~~~~~----------------~~~ 161 (348)
.|+++|++||||||.+-+|. +.++..++...... ........ ...
T Consensus 12 vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (207)
T d1ls1a2 12 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 91 (207)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhhc
Confidence 47889999999999998875 33333322211100 00011110 112
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+..+.++||||..+.....+. .+ ..... ....+-+++|+|++.+..... ......+.. + .-=+++||.|-..
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~-el-~~~~~-~~~~~~~llv~~a~~~~~~~~-~~~~f~~~~--~-~~~~I~TKlDe~~ 163 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMG-EL-ARLKE-VLGPDEVLLVLDAMTGQEALS-VARAFDEKV--G-VTGLVLTKLDGDA 163 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHH-HH-HHHHH-HHCCSEEEEEEEGGGTHHHHH-HHHHHHHHT--C-CCEEEEECGGGCS
T ss_pred cCcceeecccccchhhhhhHH-HH-HHHHh-hcCCceEEEEeccccchhHHH-HHHHHHhhC--C-CCeeEEeecCccc
Confidence 357999999996443322222 12 12222 346788999999987654433 222222221 1 2247899999754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.66 E-value=8.4e-06 Score=69.21 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=56.4
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+.|.+++|+.+.++. ......++-.... .+++.+||+||+||.+..+.......+.. ..+ .+++.+||++
T Consensus 8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g-~~v~~~Sa~~ 84 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-YDVYLTSSKD 84 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-CCEEECCHHH
T ss_pred ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccccccHHHHHHHHHHHHHHhhcc-ccceeeecCC
Confidence 46889999999886654 2222233333334 68899999999999876554433322221 123 3799999999
Q ss_pred CCCHHHHHHHHH
Q 018949 268 GHGVEDIRDWIL 279 (348)
Q Consensus 268 g~gi~eL~~~i~ 279 (348)
+.|+++|...+.
T Consensus 85 ~~gl~~L~~~l~ 96 (231)
T d1t9ha2 85 QDSLADIIPHFQ 96 (231)
T ss_dssp HTTCTTTGGGGT
T ss_pred hhHHHHHHHhhc
Confidence 999999887653
|
| >d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Prokaryotic type KH domain (KH-domain type II) family: Prokaryotic type KH domain (KH-domain type II) domain: GTPase Era C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.63 E-value=3.2e-05 Score=58.37 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=42.8
Q ss_pred cCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEecc-ceEEEeee
Q 018949 294 VSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWL-IFVEFNAF 342 (348)
Q Consensus 294 ~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~~-~~~~~~~~ 342 (348)
.++++.+++++|++||+++..+++|+||++.+.++.|.+.. +.+++++-
T Consensus 4 ~TDq~~~~~i~EiIREkil~~l~~EiPY~~~v~ie~~~e~~~~~l~I~~~ 53 (118)
T d1wf3a2 4 KSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAI 53 (118)
T ss_dssp SBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEeeecCCceEEEEEE
Confidence 47899999999999999999999999999999999998754 46666654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.59 E-value=3e-06 Score=70.58 Aligned_cols=87 Identities=15% Similarity=-0.012 Sum_probs=50.6
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
...++......++++|++.........+....+. .+.+++++.++++. ...+............ ..+++...
T Consensus 77 ~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~ 148 (213)
T d1bifa1 77 VRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ--NGYKTFFVESICVD--PEVIAANIVQVKLGSP----DYVNRDSD 148 (213)
T ss_dssp HHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH--HTCEEEEEEECCCC--HHHHHHHHHHHTTTST----TTTTSCHH
T ss_pred HHHHHHhcCCCEEEeecCCccHHHHHHHHHHHHh--cCCeEEEEEeeccH--HHHHHHhHHHHhcCCC----cccccchH
Confidence 3344445566677899988887777777777666 56788888888763 2222211111111111 23455555
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.++.++.+.+....+
T Consensus 149 ~~~~~~~~~l~~~~~ 163 (213)
T d1bifa1 149 EATEDFMRRIECYEN 163 (213)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccc
Confidence 667777776665544
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.54 E-value=0.0012 Score=52.63 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
||+|+|++|+|||||++.+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~ 22 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHh
Confidence 799999999999999999986
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.0002 Score=62.39 Aligned_cols=88 Identities=23% Similarity=0.169 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEEEE---EeCCCeeEEEEeCCCCchhhhh--hhHHHHHHH
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGI---CSGPEYQMILYDTPGIIEKKIH--MLDSMMMKN 188 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~~~---~~~~~~~~~l~DtpG~~~~~~~--~l~~~~~~~ 188 (348)
..|+|+|+.++|||+|+|.|++..... ......+|+...... ....+..+.++||.|+...... ..+.. .
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~---i 109 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW---I 109 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH---H
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHH---H
Confidence 379999999999999999999876431 111223344333222 1235667999999998542211 11111 1
Q ss_pred HHhhccCccEEEEEecCC
Q 018949 189 VRSAGINADCIVVLVDAC 206 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~ 206 (348)
+.-.+--++++||-+...
T Consensus 110 ~~l~~llSs~~i~N~~~~ 127 (277)
T d1f5na2 110 FALAVLLSSTFVYNSIGT 127 (277)
T ss_dssp HHHHHHHCSEEEEEEESC
T ss_pred HHHHHHHhCEEEEecccc
Confidence 222234567777766553
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.00031 Score=55.56 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
|.++|+|.+|+|||||+++|..
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.65 E-value=0.00029 Score=56.33 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+|+|.|++|+|||||+++|..
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 44899999999999999999864
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.40 E-value=0.0007 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
++|+|+|+||+||||+.+.|..
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.40 E-value=0.0069 Score=48.27 Aligned_cols=90 Identities=17% Similarity=0.119 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
++.-|+++|.||+||||+...+....... .++ -|.-+ ....+ ...+..++
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~~~~~--------------~i~--------~D~~~----~~~~~----~~~~~~~l 62 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV--------------HVN--------RDTLG----SWQRC----VSSCQAAL 62 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGGGTCE--------------EEE--------HHHHC----SHHHH----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCCE--------------EEc--------hHHHH----HHHHH----HHHHHHHH
Confidence 34479999999999999999886432100 001 01111 11111 12222222
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
..- ..+|+|.+.........+....+. .+.++.+|.-.+|
T Consensus 63 ~~g--~~vIiD~t~~~~~~R~~~~~~a~~--~~~~~~~v~l~~~ 102 (172)
T d1yj5a2 63 RQG--KRVVIDNTNPDVPSRARYIQCAKD--AGVPCRCFNFCAT 102 (172)
T ss_dssp HTT--CCEEEESCCCSHHHHHHHHHHHHH--HTCCEEEEEECCC
T ss_pred HCC--CCceeeCcCCCHHHHHHHHHHHHh--cCCCEEEEEeCCC
Confidence 222 235579888776666677777666 5677766654444
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.38 E-value=0.00092 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+..+|+|.|+|||||||+.+.|..
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 455899999999999999999864
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.22 E-value=0.00042 Score=56.07 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=24.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH 152 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~ 152 (348)
-|+|+|++|||||||++.|...........+.||+.
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~ 39 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA 39 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccC
Confidence 488999999999999999975422222334445544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.13 E-value=0.0012 Score=52.26 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-++|+|.+|+|||||+++|+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999863
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.00086 Score=54.23 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=26.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce-eeecCCCCceEEeEEEE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRILGI 157 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~~t~~~~~~~ 157 (348)
-|+|+|++|+||+||+++|+.... ......+.||+..-.+.
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E 46 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 46 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCcc
Confidence 489999999999999999985431 12234555666544443
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0016 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-+|+|+|++|+|||||++.+.|--
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 389999999999999999999853
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.97 E-value=0.0016 Score=50.32 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-|++.|.||+|||||++.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.95 E-value=0.0017 Score=53.50 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.+.|--
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhccc
Confidence 69999999999999999999853
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.00069 Score=56.16 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|+|+|++|||||||++.|+..
T Consensus 4 livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999754
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.95 E-value=0.018 Score=48.57 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|.+.|+||+|||++++++.+
T Consensus 42 ~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 699999999999999999865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=95.90 E-value=0.0019 Score=54.81 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++|+|++|+|||||++.+.|-.
T Consensus 28 Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3389999999999999999998743
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.90 E-value=0.0017 Score=51.38 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
|+|+++|.+||||||+...|.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998875
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.90 E-value=0.0024 Score=51.73 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
++..|+|+|+||+||||+...|..
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.89 E-value=0.002 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCcchhhHhccCCC
Confidence 79999999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.86 E-value=0.0023 Score=51.72 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+..+|+|+|+||+||||+...|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998863
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.84 E-value=0.0021 Score=54.96 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-+++|+|++|+|||||++.++|-.
T Consensus 41 Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 41 GKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhccc
Confidence 3389999999999999999998843
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0022 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 79999999999999999998753
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0022 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++|+|++|+|||||++.+.|-.
T Consensus 40 Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 40 GEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhccc
Confidence 3389999999999999999999853
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.75 E-value=0.0027 Score=55.09 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+.-.|+|+|++|+|||||++.++|-
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3348999999999999999999884
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.72 E-value=0.0024 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.+|+|+|+||+||||+...|..
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999988753
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.72 E-value=0.0025 Score=53.80 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 79999999999999999999853
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=95.70 E-value=0.0024 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.+.|-.
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999854
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.69 E-value=0.0025 Score=49.98 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-|+|.|+||+||||+.++|..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=95.61 E-value=0.003 Score=53.43 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.+.|--
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999854
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.003 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHcCCc
Confidence 79999999999999999999853
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.58 E-value=0.0031 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.+.|--
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999999853
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=95.57 E-value=0.0031 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 79999999999999999999853
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.55 E-value=0.0037 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
|..+|+|+|+||+||||+...|..
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999999875
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0031 Score=49.80 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.|.|.|++|+|||||+.++.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 59999999999999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.50 E-value=0.0045 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~ 136 (348)
+...|.++|.||+||||+..+|.
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La 27 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQ 27 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34468899999999999998875
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.031 Score=47.34 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+.+.|+||+|||++++++..
T Consensus 47 ~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEeeCCCCCCccHHHHHHHH
Confidence 599999999999999999875
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.48 E-value=0.0011 Score=53.83 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|+|+|++|||||||++.|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999998753
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.47 E-value=0.0035 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|+|+||+||||+...|..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988743
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.0026 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|+.|+|||||++.+.|-
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999984
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=95.41 E-value=0.0024 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 79999999999999999999853
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.39 E-value=0.0052 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|+|.|++|+||||+.+.|...
T Consensus 6 iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0052 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...-++++|.+|+||||+.+.|..
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344688899999999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.36 E-value=0.0037 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.+.|-.
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 79999999999999999999953
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.011 Score=50.64 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+++||+||||||+++..+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998764
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.35 E-value=0.0043 Score=49.16 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.|+|.|.+|+||||+++.|.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999875
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.33 E-value=0.0056 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+..|+|.|.+|+|||||.+.|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344699999999999999999863
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=95.30 E-value=0.0043 Score=53.05 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|+.|+|||||++.+.|-.
T Consensus 29 Ei~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 29 DVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCc
Confidence 379999999999999999999853
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.27 E-value=0.003 Score=53.98 Aligned_cols=24 Identities=38% Similarity=0.304 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-+|+|+|++|+|||||++.+.|-.
T Consensus 45 e~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHhcC
Confidence 389999999999999999998743
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.27 E-value=0.011 Score=50.59 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|.+.|++|+|||+|++++.+.
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcchhHHHHHHHH
Confidence 6999999999999999998763
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.26 E-value=0.013 Score=49.53 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-|.+.|+||+|||++++++.+
T Consensus 44 giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHH
Confidence 599999999999999999986
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.0043 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|.++|++|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.0058 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.+.|+|+|+||+||||+...|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~ 30 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVK 30 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999999865
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.24 E-value=0.0053 Score=48.14 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-|+|.|.+|+||||+.++|..
T Consensus 5 iI~l~G~~GsGKsTva~~L~~ 25 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577889999999999999864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.20 E-value=0.0049 Score=49.34 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|+|+||+||||+...|..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.19 E-value=0.0048 Score=49.26 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|+|+||+||||+...|..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998863
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.0053 Score=49.55 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.|+|+|+||+||||....|..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988753
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.03 E-value=0.0028 Score=53.56 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|++|+|||||++.+.|-.
T Consensus 32 e~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCc
Confidence 379999999999999999999853
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.0058 Score=48.66 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|+|+||+||||....|..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.0065 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+|+|+|+||+||||+...|..
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0037 Score=50.19 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhC
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
++...|.++|.||+||||+.+.|..
T Consensus 17 ~~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 17 FRGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3555788999999999999999853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.82 E-value=0.0076 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|.|+|+||+||||+...|..
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998865
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.77 E-value=0.0067 Score=47.64 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+++|++||||||+...|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988753
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.73 E-value=0.0078 Score=50.88 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-|.+.|+||+|||||..++.+
T Consensus 34 ~ilL~GpPGtGKT~la~~la~ 54 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFE 54 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999865
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.50 E-value=0.039 Score=46.70 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||++++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEecCCCCCchHHHHHHHHH
Confidence 5999999999999999998763
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.40 E-value=0.0095 Score=49.71 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.+.+.|+||+||||+++++.+
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~ 57 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAH 57 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.011 Score=48.32 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
..|+|.|.+|+|||||.+.|.
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.35 E-value=0.013 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
....+.|.|+||+|||++++.+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999998864
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.33 E-value=0.0099 Score=48.03 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHhC
Q 018949 118 VAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~ 137 (348)
|+|+|++|||||||++.|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.33 E-value=0.01 Score=47.10 Aligned_cols=20 Identities=40% Similarity=0.484 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.|+|.|.+||||||+++.|.
T Consensus 3 iivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46778999999999999985
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.18 E-value=0.011 Score=46.60 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.|.++|.+|+||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999884
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.14 E-value=0.014 Score=47.84 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+..+|+|-|+||+||||....|..
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999998864
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.02 E-value=0.014 Score=48.52 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+.+.|+||+||||+++.+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHh
Confidence 699999999999999999864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.01 E-value=0.015 Score=46.84 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhC
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++..|+|-|..||||||+++.|..
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3555899999999999999999864
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.81 E-value=0.014 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|+|.|.+|+|||||+|+|++.
T Consensus 168 nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEeeccccchHHHHHHhhh
Confidence 5999999999999999999863
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.60 E-value=0.064 Score=48.19 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+++||+||||||+++..|..
T Consensus 45 n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 45 NPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CCEEEECTTSCHHHHHHHHHH
T ss_pred CCeEECCCCCCHHHHHHHHHH
Confidence 589999999999999986653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.57 E-value=0.023 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.+.+.+.|+||+||||++.++...
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998753
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.57 E-value=0.019 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|.|+|.|+||+||||+...|..
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~ 25 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAE 25 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.46 E-value=0.013 Score=48.42 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
+.|.|++|+|||.|++++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999998764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.36 E-value=0.022 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.+.+.|++|+||||++..+..
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999998875
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.27 E-value=0.026 Score=45.79 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++++|+||||||+++..|..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHH
Confidence 799999999999999988764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.05 E-value=0.029 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|.|.|.||+|||||.+.|..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 555799999999999999999864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.97 E-value=0.03 Score=44.78 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|||.|.+|+||||+.+.|..
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998753
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.84 E-value=0.034 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~ 136 (348)
++..|||.|.+|+|||||.+.|.
T Consensus 79 ~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 79 IPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCCcHHHHHHH
Confidence 45589999999999999988864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.75 E-value=0.03 Score=46.87 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|++|+|||||+..+..
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 688999999999999998764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.65 E-value=0.026 Score=49.24 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-|+++|+||||||.|.+++..
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999875
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.33 E-value=0.023 Score=47.86 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHHHHhC
Q 018949 118 VAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~ 137 (348)
+.+.|+||+|||++++++..
T Consensus 49 l~l~GppGtGKT~l~~~l~~ 68 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVK 68 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHH
Confidence 45569999999999999875
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.20 E-value=0.024 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=17.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~ 136 (348)
+.+-|+|.|.+|+||||+.++|.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999999864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.06 E-value=0.052 Score=46.67 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~ 136 (348)
.++.-|||.|.+|+|||||...|.
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEeECCCCCCHHHHHHHHH
Confidence 345689999999999999998764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.88 E-value=0.044 Score=45.05 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.+.+.|++|+||||++..+..
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~ 55 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTK 55 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHH
Confidence 3589999999999999999875
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.046 Score=44.82 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.+.+.|++|+||||+++.+..
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHHH
Confidence 3589999999999999998754
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=0.05 Score=45.17 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.+.+.|++|+||||++.++..
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.31 E-value=0.054 Score=44.34 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+.+.|++|+||||++.++..
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 588999999999999999875
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.01 E-value=0.069 Score=42.41 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV 143 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~ 143 (348)
=|+|.|++|+||||+...+.......+
T Consensus 17 gvli~G~sG~GKS~lal~l~~~G~~lv 43 (177)
T d1knxa2 17 GVLLTGRSGIGKSECALDLINKNHLFV 43 (177)
T ss_dssp EEEEEESSSSSHHHHHHHHHTTTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCCcee
Confidence 489999999999999999887654433
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.78 E-value=0.063 Score=42.66 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS 141 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~ 141 (348)
-|+|.|++|+||||+.-.+......
T Consensus 16 gvl~~G~sG~GKStlal~l~~~g~~ 40 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELVQRGHR 40 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTCE
T ss_pred EEEEEeCCCCCHHHHHHHHHHcCCe
Confidence 5999999999999999998765443
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.61 E-value=0.042 Score=45.71 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.+.+.|++|+||||++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 48899999999999999875
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.48 E-value=0.013 Score=46.58 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
..+|+|+.|+||||++.+|.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57788999999999999974
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.078 Score=42.91 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
-|+|-|..|+||||+++.|.
T Consensus 4 fIviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999876
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.46 E-value=0.065 Score=43.08 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|-|..||||||++..|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998763
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.37 E-value=0.068 Score=43.43 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|||.|.+|+||||..+.|...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 5899999999999999988643
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.35 E-value=0.086 Score=41.54 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT 144 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~ 144 (348)
-|+|.|++|+||||+.-.+.......++
T Consensus 17 gvli~G~sg~GKS~la~~l~~~g~~li~ 44 (169)
T d1ko7a2 17 GVLITGDSGIGKSETALELIKRGHRLVA 44 (169)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHcCCeEEe
Confidence 5999999999999999888765544343
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.31 E-value=0.095 Score=47.93 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
+|+++|++|||||-|.++|.
T Consensus 51 NILliGPTGvGKTlLAr~LA 70 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLA 70 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999874
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.23 E-value=0.069 Score=47.55 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+..-+++.|+||+|||++..++.+
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999999764
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.17 E-value=0.16 Score=41.26 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=41.9
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCCh
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKP 241 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~ 241 (348)
+.+.++|||+.... .....+..+|.+++++..+.........+...++. .+.|++ +|+||.|....
T Consensus 112 ~d~IiiD~~~~~~~-----------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~--~~~~~~giv~N~~~~~~~ 178 (237)
T d1g3qa_ 112 FDFILIDCPAGLQL-----------DAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKK--AGLAILGFVLNRYGRSDR 178 (237)
T ss_dssp CSEEEEECCSSSSH-----------HHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHH--TTCEEEEEEEEEETSCTT
T ss_pred CCEEEEcccccccc-----------cchhhhhhhhcccccccccceecchhhHHHHHHhh--hhhhhhhhhhcccccccc
Confidence 57999999984321 12234678999999998753222222333444444 667766 89999987643
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.92 E-value=0.078 Score=42.88 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|||.|..|+||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.88 E-value=0.1 Score=44.47 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|.|.+|+|||||...+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998764
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=0.062 Score=44.19 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|-|..||||||+++.|..
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.57 E-value=0.063 Score=45.99 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQM 135 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l 135 (348)
--+|+|+.|+||||++.++
T Consensus 26 lnvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEEECCTTTCSTHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 4689999999999999987
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.45 E-value=0.088 Score=41.87 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-+.|.|+||+|||+|+..+..
T Consensus 25 v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999988764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.12 Score=42.06 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
.-|+|-|..||||||++..|.
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358888999999999888764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.71 E-value=0.27 Score=38.01 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|.+-|+-|+|||||+..+..
T Consensus 35 ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 35 MVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEecCCCccHHHHHHHHHh
Confidence 688899999999999999863
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.60 E-value=0.13 Score=46.31 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+-|.|.|++|+||||++.+++.
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~ 180 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQ 180 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hhceEEEEcCCCCCccHHHHHHhh
Confidence 456799999999999999999875
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.52 E-value=0.15 Score=44.21 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.++++|++|||||.|..+|.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la 73 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLS 73 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHH
Confidence 69999999999999999875
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.93 E-value=0.13 Score=41.98 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+.|.|+||+|||+|+..+...
T Consensus 35 ~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 35 SITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999988754
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=87.83 E-value=0.12 Score=41.75 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.--+++.|++++|||+++++|++
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 334799999999999999998754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=87.52 E-value=0.086 Score=46.03 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.|.++|+||+|||+|+.++.
T Consensus 30 ~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 69999999999999999875
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.44 E-value=0.12 Score=45.97 Aligned_cols=19 Identities=21% Similarity=0.627 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQM 135 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l 135 (348)
--+|+|+.|+|||+++.+|
T Consensus 27 l~~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 27 FTSIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4578999999999999997
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.91 E-value=0.17 Score=41.47 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.|+|=|.-||||||+++.|.
T Consensus 4 ~IviEG~~GsGKST~~~~L~ 23 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999986
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.70 E-value=0.17 Score=44.08 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|+||+|||.|..++.+.
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 4556799999999999998763
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.58 E-value=0.17 Score=41.59 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...+.|.|+||+|||+|...++.
T Consensus 36 G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 36 QAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 33689999999999999998764
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.87 E-value=0.21 Score=44.21 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
..+.++|++|||||-|..+|.
T Consensus 69 ~niLfiGPTGvGKTElAk~LA 89 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMAQTLA 89 (364)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred cceeeeCCCCccHHHHHHHHH
Confidence 379999999999999999874
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=85.48 E-value=0.2 Score=40.93 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.-+.|.|+||+|||+|+..+...
T Consensus 27 sl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36899999999999999887643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.22 E-value=0.25 Score=40.03 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~ 136 (348)
..-|+|=|.-|+||||+++.|.
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 3469999999999999998875
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=85.02 E-value=0.22 Score=40.40 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+.|.|+||+|||+|+..+..
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 688899999999999988763
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=84.51 E-value=0.24 Score=41.55 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
-++|.|.||+|||+|+..+.
T Consensus 37 l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 37 VIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58888999999999988765
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=84.41 E-value=0.24 Score=40.59 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|..|+||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998854
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=84.01 E-value=0.3 Score=39.31 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=18.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~ 136 (348)
.-.+.|.|+||+|||+|+..++
T Consensus 26 G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHH
Confidence 3368899999999999987654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=82.97 E-value=0.37 Score=41.08 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=23.7
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhC
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|--+..|++|+|.+|+|||+|+..+..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4555777999999999999999988764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.93 E-value=0.39 Score=39.11 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
.-.+.|.|+||+|||+|.-.+..
T Consensus 37 G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 37 MAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 33799999999999999998864
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=82.44 E-value=0.48 Score=39.89 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.-.+.+.|++++|||+|++++..
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHH
Confidence 444789999999999999998753
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.88 E-value=0.42 Score=38.45 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-+.+.|++|+||||++..+..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 499999999999999997653
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=81.82 E-value=0.35 Score=40.26 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.++|+|++|+|||+|+-.+.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57789999999999998765
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.04 E-value=2.5 Score=35.55 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhC
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
|--+..|++|+|.+|+|||+|+..+..
T Consensus 64 pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 64 PIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp CCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEeecCCCCChHHHHHHHHH
Confidence 444566999999999999999876654
|