Citrus Sinensis ID: 018957

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAPPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFILL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccEEEEEccccccccccEEEEEEcccEEEEEEEEcccccEEEEEEcccccccccccEEEEccccEEEcccccccccEEEccccccccccccccccccccccccccccccccccEEEEEccEEEEEcccccccccEEEEccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHccccccccccccEEEEEEccccccccccHHHHcHHHHHHHHcccccccEEEEEEcccHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEccEEEEEEccccccccEEEEEcccccccEEEEEEEEEccEEEEEEcccccccEcccEEEEEEEEcEEEEcHHHcccEEcccccEccccccccccEEEEcccccccHHHccccccEEccccHHHHHHccEEcccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHHHHHHccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHc
Coil and Loop (DISEMBL)
MASRRLLSSLLRSsvrrspsksslsnssvfspaatrraspyghlLSRVSEYatsaaatappaqtpksdvkkggggkitdeftgkgaiGQVCQVIGAVVdvrfdeglppilTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGqrvlntgspitvpvgrVTLGRIMNvigepidekgdlktehylpihreapafvEQATEQQILVTGIKVVdllapyqrggkiglfggagvgKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIklgdkqadsKCALVYgqmneppgararvgltgltvaehfrdaegqdVLLFIDNIFRFTQVSFILL
Flexible Loop (DISEMBL)
masrrllssllrssvrrspsksslsnssvfspaatrraspYGHLLSRVSEYATsaaatappaqtpksdvkkgggGKITdeftgkgaigQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVrgqrvlntgspitvpvgrvTLGRIMNVIgepidekgdLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQmneppgaraRVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFILL
Low Complexity Region (SEG)
MAsrrllssllrssvrrspsksslsnssVFSPAATRRASPYGHLLSRVSEYatsaaatappaqtpKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFILL
Disordered region (IsUnstruct)
*****************************************************************************TDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL*
Disordered Region (DISOPRED)
****************************************************************************************QVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFILL
Disordered Region (DISEMBL)
************************************RASPYGHLLSRVSEYA*********************GGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFILL
Disordered Region (DISPRO)
**************************************SPYGHLLSRVSEYATSAA****************************GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFILL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAPPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFILL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
P17614	560	ATP synthase subunit beta	N/A	no	0.979	0.608	0.813	1e-155
Q01859	552	ATP synthase subunit beta	yes	no	0.968	0.610	0.811	1e-152
P19023	553	ATP synthase subunit beta	N/A	no	0.974	0.613	0.822	1e-150
P29685	562	ATP synthase subunit beta	N/A	no	0.876	0.542	0.888	1e-146
Q9C5A9	559	ATP synthase subunit beta	yes	no	0.902	0.561	0.776	1e-142
P37399	547	ATP synthase subunit beta	N/A	no	0.942	0.599	0.731	1e-140
P83483	556	ATP synthase subunit beta	yes	no	0.905	0.566	0.769	1e-138
P83484	556	ATP synthase subunit beta	yes	no	0.905	0.566	0.769	1e-138
P38482	574	ATP synthase subunit beta	N/A	no	0.738	0.447	0.821	1e-121
P10719	529	ATP synthase subunit beta	yes	no	0.830	0.546	0.718	1e-117

>sp|P17614|ATPBM_NICPL ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1

 Score =  546 bits (1407), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 284/349 (81%), Positives = 307/349 (87%), Gaps = 8/349 (2%)

Query: 1   MASRRLLSSLLRSSVRRSPS--KSSLSNS-SVFSPAATRRASPYGHLLSRVSEYATSAAA 57
           MASRRLL+SLLR S +R       SL NS    +  A+ RASP G LL+R  +YATSAAA
Sbjct: 1   MASRRLLASLLRQSAQRGGGLISRSLGNSIPKSASRASSRASPKGFLLNRAVQYATSAAA 60

Query: 58  TAPPAQTPKSDVKKGG--GGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEV 115
              PA  P +  K G    GKITDEFTG G+IG+VCQVIGAVVDVRFDEGLPPILTALEV
Sbjct: 61  ---PASQPSTPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEV 117

Query: 116 VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVI 175
           +D+ +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVI
Sbjct: 118 LDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVI 177

Query: 176 GEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235
           GE IDE+G + T+H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA
Sbjct: 178 GEAIDERGPITTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 237

Query: 236 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
           GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLG+KQ++SKCA
Sbjct: 238 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCA 297

Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ +
Sbjct: 298 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 346

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Nicotiana plumbaginifolia (taxid: 4092)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 1EC: 4

>sp|Q01859|ATPBM_ORYSJ ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2

 Score =  538 bits (1387), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/345 (81%), Positives = 302/345 (87%), Gaps = 8/345 (2%)

Query: 1   MASRRLLSSLLRSSVR-RSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATA 59
           MA+RR LSSL+R++ R R  S +      +  P      SP G+L +R + YAT+AAA  
Sbjct: 1   MATRRALSSLVRAASRLRGASPAPRPRGPLHRP------SPSGYLFNRAAAYATAAAAKE 54

Query: 60  PPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHS 119
                P +    GGG KITDEFTG GA+GQVCQVIGAVVDVRFDEGLPPILTALEV+DH+
Sbjct: 55  AAPPAPATGKATGGG-KITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHN 113

Query: 120 VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPI 179
           +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRIMNVIGEPI
Sbjct: 114 IRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPI 173

Query: 180 DEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239
           DEKGD+ T H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK
Sbjct: 174 DEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 233

Query: 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299
           TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQ++SKCALVYG
Sbjct: 234 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYG 293

Query: 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ +
Sbjct: 294 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 338

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P19023|ATPBM_MAIZE ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1

 Score =  532 bits (1371), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/344 (82%), Positives = 304/344 (88%), Gaps = 5/344 (1%)

Query: 1   MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAP 60
           MASRR++SSLLRS+ R   +  +         A   R SP G+L +R + YA+SAAA A 
Sbjct: 1   MASRRVVSSLLRSASRLRAASPAAPRPR----APPHRPSPAGYLFNRAAAYASSAAAQAA 56

Query: 61  PAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV 120
           PA        K GGGKITDEFTG GAIGQVCQVIGAVVDVRFDEGLPPILTALEV+D+++
Sbjct: 57  PATP-PPATGKTGGGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNNI 115

Query: 121 RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPID 180
           RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGEPID
Sbjct: 116 RLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPID 175

Query: 181 EKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240
           EKGD+KT H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT
Sbjct: 176 EKGDIKTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 235

Query: 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ 300
           VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKL DKQ++SKCALVYGQ
Sbjct: 236 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLDDKQSESKCALVYGQ 295

Query: 301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ +
Sbjct: 296 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 339

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Zea mays (taxid: 4577)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P29685|ATPBM_HEVBR ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1

 Score =  516 bits (1330), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 271/305 (88%), Positives = 283/305 (92%)

Query: 40  PYGHLLSRVSEYATSAAATAPPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVD 99
           PYG+LL+R +EYATSAAA APP   P       GGGKITDEFTGKGAIGQVCQVIGAVVD
Sbjct: 44  PYGYLLTRAAEYATSAAAAAPPQPPPAKPEGGKGGGKITDEFTGKGAIGQVCQVIGAVVD 103

Query: 100 VRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159
           VRFDEGLPPILT+LEV+DHS+RLVLEVAQHMGEG+VRTIAMDGTEGLVRGQRVLNTGSPI
Sbjct: 104 VRFDEGLPPILTSLEVLDHSIRLVLEVAQHMGEGMVRTIAMDGTEGLVRGQRVLNTGSPI 163

Query: 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDL 219
           TVPVGR        VIGEPIDE+GD+KT H+LPIHREAPAFV+QATEQQILVTGIKVVDL
Sbjct: 164 TVPVGRANPWTYHEVIGEPIDERGDIKTSHFLPIHREAPAFVDQATEQQILVTGIKVVDL 223

Query: 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
           LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE
Sbjct: 224 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 283

Query: 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR 339
           SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR
Sbjct: 284 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR 343

Query: 340 FTQVS 344
           FTQ +
Sbjct: 344 FTQAN 348

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Hevea brasiliensis (taxid: 3981)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|Q9C5A9|ATPBO_ARATH ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1

 Score =  505 bits (1301), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/322 (77%), Positives = 282/322 (87%), Gaps = 8/322 (2%)

Query: 26  NSSVFSPAATRRASPYGHLLSRVSEYATSAAA-TAPPAQTPKSDVKKGGGGKITDEFTGK 84
           N  + SP     A+P G LL RV+EY+TS+ A +A P+  P  D      GK T ++ GK
Sbjct: 29  NPRLLSPGPAHGAAPCGTLLGRVAEYSTSSPANSAAPSSAPAKDE-----GKKTYDYGGK 83

Query: 85  GAIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDG 142
           GAIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDG
Sbjct: 84  GAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDG 143

Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVE 202
           TEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+
Sbjct: 144 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVD 203

Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262
            AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG
Sbjct: 204 LATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 263

Query: 263 VGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322
           VGERTREGNDLYREMIESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+F
Sbjct: 264 VGERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYF 323

Query: 323 RDAEGQDVLLFIDNIFRFTQVS 344
           RDAEGQDVLLFIDNIFRFTQ +
Sbjct: 324 RDAEGQDVLLFIDNIFRFTQAN 345

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P37399|ATPBM_DAUCA ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1

 Score =  499 bits (1284), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/350 (73%), Positives = 286/350 (81%), Gaps = 22/350 (6%)

Query: 1   MASRRLLSSLLRSSVRRS--PS----KSSLSNSSVFSPAATRRASPYGHLLSRVSEYATS 54
           MASRRLLSS LRSS RRS  PS    + S   S   SPA+  R             YAT+
Sbjct: 1   MASRRLLSSFLRSSTRRSLRPSFSNPRPSFLTSYCSSPASILR------------RYATA 48

Query: 55  AAATAPPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALE 114
           A A  P A  P +     G G ITDE TG GAIGQVCQ+IGAVVDV+F+EGLPPI+TALE
Sbjct: 49  APAKEPAASKP-AGTAGTGKGTITDEKTGAGAIGQVCQIIGAVVDVKFEEGLPPIMTALE 107

Query: 115 VVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNV 174
           V+D  +RLVLEVA  +GE  VRTIAMDGTEGLVRGQ+VLNTG+PIT+PVGR TLGRI+NV
Sbjct: 108 VIDFEIRLVLEVAPSLGENTVRTIAMDGTEGLVRGQKVLNTGAPITIPVGRATLGRIINV 167

Query: 175 IGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGG 234
           IGEPID +G++KT+ YLPIHREAP FV+QATEQQILVTGIKVVDLLAPYQ+GGKIGLFGG
Sbjct: 168 IGEPIDHRGEIKTDQYLPIHREAPTFVDQATEQQILVTGIKVVDLLAPYQKGGKIGLFGG 227

Query: 235 AGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKC 294
             VGKTVLIMELINNVAKAH   +VFAGVGERTREGNDLY+EM+ESGVIKLGD+QA+SKC
Sbjct: 228 DWVGKTVLIMELINNVAKAH---AVFAGVGERTREGNDLYKEMMESGVIKLGDQQAESKC 284

Query: 295 ALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           ALVYGQMNEPPG+RARVGLTGLTVAEHFRDAEG+DVLLF+D  FRFTQ +
Sbjct: 285 ALVYGQMNEPPGSRARVGLTGLTVAEHFRDAEGEDVLLFVDKRFRFTQAN 334

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Daucus carota (taxid: 4039)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P83483|ATPBM_ARATH ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1

 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/321 (76%), Positives = 283/321 (88%), Gaps = 6/321 (1%)

Query: 26  NSSVFSPAATRRASPYGHLLSRVSEYATSAAATAPPAQTPKSDVKKGGGGKITDEFTGKG 85
           N  + SP+  R A+P  +LL RV+EYATS+ A++    +  +  +    GK T ++ GKG
Sbjct: 26  NPRLPSPSPARHAAPCSYLLGRVAEYATSSPASSAAPSSAPAKDE----GKKTYDYGGKG 81

Query: 86  AIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGT 143
           AIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGT
Sbjct: 82  AIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGT 141

Query: 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQ 203
           EGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ 
Sbjct: 142 EGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDL 201

Query: 204 ATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263
           AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV
Sbjct: 202 ATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 261

Query: 264 GERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323
           GERTREGNDLYREMIESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FR
Sbjct: 262 GERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFR 321

Query: 324 DAEGQDVLLFIDNIFRFTQVS 344
           DAEGQDVLLFIDNIFRFTQ +
Sbjct: 322 DAEGQDVLLFIDNIFRFTQAN 342

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P83484|ATPBN_ARATH ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1

 Score =  491 bits (1263), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/321 (76%), Positives = 283/321 (88%), Gaps = 6/321 (1%)

Query: 26  NSSVFSPAATRRASPYGHLLSRVSEYATSAAATAPPAQTPKSDVKKGGGGKITDEFTGKG 85
           N  + SP+  R A+P  +LL RV+EYATS+ A++    +  +  +    GK T ++ GKG
Sbjct: 26  NPRLPSPSPARHAAPCSYLLGRVAEYATSSPASSAAPSSAPAKDE----GKKTYDYGGKG 81

Query: 86  AIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGT 143
           AIG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGT
Sbjct: 82  AIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGT 141

Query: 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQ 203
           EGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ 
Sbjct: 142 EGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDL 201

Query: 204 ATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263
           AT Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV
Sbjct: 202 ATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 261

Query: 264 GERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323
           GERTREGNDLYREMIESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FR
Sbjct: 262 GERTREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFR 321

Query: 324 DAEGQDVLLFIDNIFRFTQVS 344
           DAEGQDVLLFIDNIFRFTQ +
Sbjct: 322 DAEGQDVLLFIDNIFRFTQAN 342

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P38482|ATPBM_CHLRE ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/257 (82%), Positives = 229/257 (89%)

Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G V QVIG VVDVRFD  LP IL+ALEV  H+VRLVLEVAQHMG+  VR +AMD T+GLV
Sbjct: 38  GFVSQVIGPVVDVRFDGELPSILSALEVQGHNVRLVLEVAQHMGDNTVRCVAMDSTDGLV 97

Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
           RGQ+V+NTGSPI VPVGR TLGRIMNVIGEP+DE+G ++      IHREAP F EQ+TEQ
Sbjct: 98  RGQKVVNTGSPIKVPVGRGTLGRIMNVIGEPVDEQGPIECSEVWSIHREAPEFTEQSTEQ 157

Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
           +ILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT
Sbjct: 158 EILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 217

Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
           REGNDLYREMIESGVIKLGDK+ +SKC LVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 218 REGNDLYREMIESGVIKLGDKRGESKCTLVYGQMNEPPGARARVALTGLTVAEYFRDVEG 277

Query: 328 QDVLLFIDNIFRFTQVS 344
           QDVLLF+DNIFRFTQ +
Sbjct: 278 QDVLLFVDNIFRFTQAN 294

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Chlamydomonas reinhardtii (taxid: 3055)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

>sp|P10719|ATPB_RAT ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2

 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/305 (71%), Positives = 239/305 (78%), Gaps = 16/305 (5%)

Query: 38  ASPYGHLLSRVSEYATSAAATAPPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAV 97
           A P  HLL R          TAP    P  D       + +       A GQ+  VIGAV
Sbjct: 25  ALPQAHLLLR----------TAPAGVHPARDY----AAQSSAAPKAGTATGQIVAVIGAV 70

Query: 98  VDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS 157
           VDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+
Sbjct: 71  VDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGA 130

Query: 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVV 217
           PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVV
Sbjct: 131 PIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVV 190

Query: 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM 277
           DLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY EM
Sbjct: 191 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEM 250

Query: 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNI 337
           IESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNI
Sbjct: 251 IESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 308

Query: 338 FRFTQ 342
           FRFTQ
Sbjct: 309 FRFTQ 313

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
242129046	557	ATP synthase beta subunit 1 [Gossypium h	0.985	0.615	0.851	1e-160
356575611	559	PREDICTED: ATP synthase subunit beta, mi	0.985	0.613	0.837	1e-160
3893824	553	ATPase beta subunit [Nicotiana sylvestri	0.965	0.607	0.818	1e-159
3676296	556	mitochondrial ATPase beta subunit [Nicot	0.977	0.611	0.817	1e-157
255582911	561	ATP synthase beta subunit, putative [Ric	0.931	0.577	0.875	1e-157
356536246	559	PREDICTED: ATP synthase subunit beta, mi	0.985	0.613	0.837	1e-156
3893822	555	ATPase beta subunit [Nicotiana sylvestri	0.974	0.610	0.812	1e-155
357444609	1127	ATP synthase subunit beta [Medicago trun	0.988	0.305	0.843	1e-155
218188864	625	hypothetical protein OsI_03305 [Oryza sa	0.982	0.547	0.817	1e-154
115439241	557	Os01g0685800 [Oryza sativa Japonica Grou	0.982	0.614	0.817	1e-154

>gi|242129046|gb|ACS83602.1| ATP synthase beta subunit 1 [Gossypium hirsutum]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/344 (85%), Positives = 310/344 (90%), Gaps = 1/344 (0%)

Query: 1   MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAP 60
           MASRRLLSS LRS+ RRS SKS      + SP+ TRR  P  + LSR +EY+TSAAA A 
Sbjct: 1   MASRRLLSSFLRSTSRRSLSKSPSPTPRLPSPSPTRRPFPCPYFLSRDAEYSTSAAAAAS 60

Query: 61  PAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV 120
                    KKGG GKITDEFTG GAIGQVCQVIGAVVDVRFDEGLPPILTALEV+DHS+
Sbjct: 61  APSQ-PPPAKKGGKGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVMDHSI 119

Query: 121 RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPID 180
           RLVLEVAQH+GE +VRTIAMDGTEGLVRGQ VLNTGSPITVPVGR TLGRI+NVIGEPID
Sbjct: 120 RLVLEVAQHLGENMVRTIAMDGTEGLVRGQPVLNTGSPITVPVGRATLGRIINVIGEPID 179

Query: 181 EKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240
           EKG+LKT+H+LPIHREAPAFV+QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT
Sbjct: 180 EKGELKTDHFLPIHREAPAFVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 239

Query: 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ 300
           VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLG+KQADSKCALVYGQ
Sbjct: 240 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQADSKCALVYGQ 299

Query: 301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ +
Sbjct: 300 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 343

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575611|ref|XP_003555932.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Glycine max]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/345 (83%), Positives = 315/345 (91%), Gaps = 2/345 (0%)

Query: 1   MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAP 60
           MASRR +SSL+RSS+RRS SK S+S +S     ++ RASP+G+LL+RV+EYAT+AAA   
Sbjct: 1   MASRRFVSSLIRSSLRRSQSKPSIS-ASASRLTSSNRASPHGYLLNRVAEYATAAAAATA 59

Query: 61  PAQTPKSDVKK-GGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHS 119
           P   P    K+  GGGKITDEFTGKG+IGQVCQVIGAVVDVRFDEGLPPI+TALEV+DHS
Sbjct: 60  PPSAPPPGKKEVSGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPIMTALEVLDHS 119

Query: 120 VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPI 179
            RLVLEVAQH+GEGVVRTIAMD TEG+VRG RVLNTGSPITVPVGR TLGRI+NVIGEPI
Sbjct: 120 SRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEPI 179

Query: 180 DEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239
           D+KG++ TEHYLPIHREAPAFVEQ T QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK
Sbjct: 180 DDKGEINTEHYLPIHREAPAFVEQETAQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239

Query: 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299
           TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQ++SKCALVYG
Sbjct: 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYG 299

Query: 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLF+DNIFRFTQ +
Sbjct: 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQAN 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3893824|gb|AAD03394.1| ATPase beta subunit [Nicotiana sylvestris]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 284/347 (81%), Positives = 305/347 (87%), Gaps = 11/347 (3%)

Query: 1   MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAP 60
           MASRR LSS+LRSS+R S SK SL+           R SP GHLL R   YATSAAA A 
Sbjct: 1   MASRRFLSSMLRSSIRHSSSKPSLTTH-------IHRPSPAGHLLHRAVNYATSAAAKAT 53

Query: 61  PA---QTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD 117
           PA   +TP   +K+ GG KITDE+TG GAIG VCQVIGAVVDVRFDEGLPPILTALEV+D
Sbjct: 54  PAPQKKTPPPKIKETGG-KITDEYTGAGAIGSVCQVIGAVVDVRFDEGLPPILTALEVMD 112

Query: 118 HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGE 177
           + +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGE
Sbjct: 113 NDIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGE 172

Query: 178 PIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237
            IDE+GD+KT+HYLPIHREAP+FVEQATEQQILVTGIKVVDLLAPYQ+GGKIGLFGGAGV
Sbjct: 173 AIDERGDIKTDHYLPIHREAPSFVEQATEQQILVTGIKVVDLLAPYQKGGKIGLFGGAGV 232

Query: 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297
           GKTVLIMELINNVAKAHGGFSVFAGVGERT EGNDLYR+MIESGVI LGD Q +SKCALV
Sbjct: 233 GKTVLIMELINNVAKAHGGFSVFAGVGERTPEGNDLYRQMIESGVINLGDNQGESKCALV 292

Query: 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ +
Sbjct: 293 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 339

Source: Nicotiana sylvestris

Species: Nicotiana sylvestris

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3676296|gb|AAD03392.1| mitochondrial ATPase beta subunit [Nicotiana sylvestris]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 283/346 (81%), Positives = 309/346 (89%), Gaps = 6/346 (1%)

Query: 1   MASRRLLSSLLRSSVRR--SPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAAT 58
           MA+RRLL+SLLRS+ +R  + S+S L+NS    P  T RASP G LL+R  +YATSAAA 
Sbjct: 1   MATRRLLASLLRSTAQRGGAISRSPLANSI---PRTTSRASPKGFLLNRAVKYATSAAAE 57

Query: 59  APPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH 118
            P A  PK    +  G KITDEFTG G+IG+VCQVIGAVVDVRFDEGLPPILTALEV+D+
Sbjct: 58  KPKATPPKPSGNEPTG-KITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEVLDN 116

Query: 119 SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEP 178
            +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGEP
Sbjct: 117 QIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEP 176

Query: 179 IDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238
           IDE+GD+ T+H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG
Sbjct: 177 IDERGDINTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 236

Query: 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY 298
           KTVLIMELINNVAKAHGGFSVF GVGE + EGNDLYREMIESGVIKLGDKQ++SKCALVY
Sbjct: 237 KTVLIMELINNVAKAHGGFSVFPGVGEPSAEGNDLYREMIESGVIKLGDKQSESKCALVY 296

Query: 299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ +
Sbjct: 297 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 342

Source: Nicotiana sylvestris

Species: Nicotiana sylvestris

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582911|ref|XP_002532227.1| ATP synthase beta subunit, putative [Ricinus communis] gi|223528084|gb|EEF30158.1| ATP synthase beta subunit, putative [Ricinus communis]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/329 (87%), Positives = 306/329 (93%), Gaps = 5/329 (1%)

Query: 20  SKSSLSNS----SVFSPAATRRASPYGHLLSRVSEYATSAAATAPPAQTPKSDVKKGGGG 75
           SKS LSNS    S  SP +TRRAS YG+LL+R SEYATSAAA A P  T +  VK  GGG
Sbjct: 20  SKSPLSNSNPKLSTPSPISTRRASSYGYLLNRTSEYATSAAAAAAPPSTSEG-VKGSGGG 78

Query: 76  KITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVV 135
           KITD+FTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEV+DHS+RLVLEVAQH+G  +V
Sbjct: 79  KITDDFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDHSIRLVLEVAQHLGGSMV 138

Query: 136 RTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHR 195
           RTIAMDGTEGLVRGQ+VLNTGSPITVPVGR TLGRI+NVIGEPIDEKGDLKT+H+LPIHR
Sbjct: 139 RTIAMDGTEGLVRGQKVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDLKTDHFLPIHR 198

Query: 196 EAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG 255
           EAP+FV+QATEQQILVTGIKVVD+LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG
Sbjct: 199 EAPSFVDQATEQQILVTGIKVVDMLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG 258

Query: 256 GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315
           GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQA+SKCALVYGQMNEPPGARARVGLTG
Sbjct: 259 GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAESKCALVYGQMNEPPGARARVGLTG 318

Query: 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           LTVAEHFRDAEGQDVLLFIDNIFRFTQ +
Sbjct: 319 LTVAEHFRDAEGQDVLLFIDNIFRFTQAN 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536246|ref|XP_003536650.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Glycine max]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 289/345 (83%), Positives = 313/345 (90%), Gaps = 2/345 (0%)

Query: 1   MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAP 60
           MASRRL+SSL+RSS+RRS SK S+S +S     ++ RASP+G+LL+RV+EYAT+AAA   
Sbjct: 1   MASRRLVSSLIRSSLRRSQSKPSIS-ASTSRLTSSNRASPHGYLLNRVAEYATAAAAATT 59

Query: 61  PAQTPKSDVKKGGGGK-ITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHS 119
           P   P    K+ GGG  ITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPI+TALEV+DHS
Sbjct: 60  PPSPPPPGKKELGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPIMTALEVLDHS 119

Query: 120 VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPI 179
            RLVLEVAQH+GEGVVRTIAMD TEG+VRG RVLNTGSPITVPVGR TLGRI+NVIGEPI
Sbjct: 120 SRLVLEVAQHLGEGVVRTIAMDATEGVVRGWRVLNTGSPITVPVGRATLGRIINVIGEPI 179

Query: 180 DEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239
           D KG++ TEHYLPIHREAPAFVEQ T QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK
Sbjct: 180 DAKGEINTEHYLPIHREAPAFVEQETAQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239

Query: 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299
           TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKL DKQ++SKCALVYG
Sbjct: 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLDDKQSESKCALVYG 299

Query: 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLF+DNIFRFTQ +
Sbjct: 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQAN 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3893822|gb|AAD03393.1| ATPase beta subunit [Nicotiana sylvestris]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/346 (81%), Positives = 308/346 (89%), Gaps = 7/346 (2%)

Query: 1   MASRRLLSSLLRSSVRR--SPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAAT 58
           M+SRRLL+SLLRS+ +R  + S+S L+NS    P  T RASP G LL+R  +YATSAAA 
Sbjct: 1   MSSRRLLASLLRSTAQRGGAISRSPLANSI---PRTTSRASPKGFLLNRAVKYATSAAAE 57

Query: 59  APPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH 118
            P A  PK    +  G KITDEFTG G+IG+VCQVIGAV+DVRFDEGLPPILTALEV+D+
Sbjct: 58  KPKATPPKPSGNEPTG-KITDEFTGAGSIGKVCQVIGAVLDVRFDEGLPPILTALEVLDN 116

Query: 119 SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEP 178
            +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGEP
Sbjct: 117 QIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEP 176

Query: 179 IDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238
           IDE+GD+ T+H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG
Sbjct: 177 IDERGDINTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 236

Query: 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY 298
           KTVLIMELINNVAKAH GFSVF GVGE + EGNDLYREMIESGVIKLGDKQ++SKCALVY
Sbjct: 237 KTVLIMELINNVAKAH-GFSVFPGVGEPSAEGNDLYREMIESGVIKLGDKQSESKCALVY 295

Query: 299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ +
Sbjct: 296 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 341

Source: Nicotiana sylvestris

Species: Nicotiana sylvestris

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444609|ref|XP_003592582.1| ATP synthase subunit beta [Medicago truncatula] gi|355481630|gb|AES62833.1| ATP synthase subunit beta [Medicago truncatula]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 291/345 (84%), Positives = 314/345 (91%), Gaps = 1/345 (0%)

Query: 1   MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAP 60
           MASRR++SSL+RSS+R S SKSS++ S+    ++  RASPY +LL+RV+EYAT+AAA AP
Sbjct: 1   MASRRIVSSLIRSSLRPSLSKSSITTSTSRLSSSQSRASPYAYLLNRVTEYATAAAAAAP 60

Query: 61  PAQTPKSDVK-KGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHS 119
                    K   GGGKITDEFTGKGAIGQVCQVIGAVVDVRF+EGLPPILTALEV+DHS
Sbjct: 61  APPQTPPAKKVPDGGGKITDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDHS 120

Query: 120 VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPI 179
            RLVLEVAQHMGEGVVRTIAMD TEG+VRG RVLNTGSPI+VPVGR TLGRIMNVIGEPI
Sbjct: 121 TRLVLEVAQHMGEGVVRTIAMDATEGVVRGWRVLNTGSPISVPVGRCTLGRIMNVIGEPI 180

Query: 180 DEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239
           D KGD KTEH+LPIHREAP FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK
Sbjct: 181 DHKGDFKTEHFLPIHREAPLFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 240

Query: 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299
           TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGD+Q++SKCALVYG
Sbjct: 241 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDQQSESKCALVYG 300

Query: 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLF+DNIFRFTQ +
Sbjct: 301 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFVDNIFRFTQAN 345

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218188864|gb|EEC71291.1| hypothetical protein OsI_03305 [Oryza sativa Indica Group]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/345 (81%), Positives = 303/345 (87%), Gaps = 3/345 (0%)

Query: 1   MASRRLLSSLLRSSVR-RSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATA 59
           MA+RR L+S+LRS+ R R+ S S     +   P   RR SP G LL+R +    S+AA  
Sbjct: 1   MATRRALTSVLRSASRLRAASPSPCPRRAPLHPH--RRPSPAGFLLNRAAAAYASSAAAQ 58

Query: 60  PPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHS 119
                P +  K  GGGKITDEFTG GA+GQVCQVIGAVVDVRFDEGLPPILTALEV+DH+
Sbjct: 59  AAPAPPPASGKATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHN 118

Query: 120 VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPI 179
           +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRIMNVIGEPI
Sbjct: 119 IRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPI 178

Query: 180 DEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239
           DEKGD+ T H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK
Sbjct: 179 DEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 238

Query: 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299
           TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQ++SKCALVYG
Sbjct: 239 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYG 298

Query: 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ +
Sbjct: 299 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 343

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115439241|ref|NP_001043900.1| Os01g0685800 [Oryza sativa Japonica Group] gi|113533431|dbj|BAF05814.1| Os01g0685800 [Oryza sativa Japonica Group]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/345 (81%), Positives = 303/345 (87%), Gaps = 3/345 (0%)

Query: 1   MASRRLLSSLLRSSVR-RSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATA 59
           MA+RR L+S+LRS+ R R+ S S     +   P   RR SP G LL+R +    S+AA  
Sbjct: 1   MATRRALTSVLRSASRLRAASPSPCPRRAPLHPH--RRPSPAGFLLNRAAAAYASSAAAQ 58

Query: 60  PPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHS 119
                P +  K  GGGKITDEFTG GA+GQVCQVIGAVVDVRFDEGLPPILTALEV+DH+
Sbjct: 59  AAPAPPPASGKATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHN 118

Query: 120 VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPI 179
           +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRIMNVIGEPI
Sbjct: 119 IRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPI 178

Query: 180 DEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239
           DEKGD+ T H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK
Sbjct: 179 DEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 238

Query: 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299
           TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQ++SKCALVYG
Sbjct: 239 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYG 298

Query: 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344
           QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ +
Sbjct: 299 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQAN 343

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
UNIPROTKB|Q01859	552	ATPB "ATP synthase subunit bet	0.882	0.556	0.853	2.8e-137
TAIR|locus:505006590	556	AT5G08690 [Arabidopsis thalian	0.890	0.557	0.768	6.1e-126
TAIR|locus:504956338	559	AT5G08680 [Arabidopsis thalian	0.896	0.558	0.764	2.6e-125
RGD|621368	529	Atp5b "ATP synthase, H+ transp	0.732	0.482	0.809	5.1e-106
UNIPROTKB|G3V6D3	529	Atp5b "ATP synthase subunit be	0.732	0.482	0.809	5.1e-106
UNIPROTKB|P06576	529	ATP5B "ATP synthase subunit be	0.732	0.482	0.805	1.4e-105
MGI|MGI:107801	529	Atp5b "ATP synthase, H+ transp	0.732	0.482	0.805	1.4e-105
UNIPROTKB|F1PDB4	527	ATP5B "ATP synthase subunit be	0.732	0.483	0.805	4.6e-105
UNIPROTKB|P00829	528	ATP5B "ATP synthase subunit be	0.727	0.479	0.807	9.5e-105
UNIPROTKB|F1SLA0	528	ATP5B "ATP synthase subunit be	0.732	0.482	0.801	9.5e-105

UNIPROTKB|Q01859 ATPB "ATP synthase subunit beta, mitochondrial" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
 Identities = 263/308 (85%), Positives = 278/308 (90%)

Query:    37 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGA 96
             R SP G+L +R + Y               +  K  GGGKITDEFTG GA+GQVCQVIGA
Sbjct:    32 RPSPSGYLFNRAAAYATAAAAKEAAPPAPATG-KATGGGKITDEFTGAGAVGQVCQVIGA 90

Query:    97 VVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTG 156
             VVDVRFDEGLPPILTALEV+DH++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTG
Sbjct:    91 VVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTG 150

Query:   157 SPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKV 216
             SPITVPVGR TLGRIMNVIGEPIDEKGD+ T H+LPIHREAPAFVEQATEQQILVTGIKV
Sbjct:   151 SPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKV 210

Query:   217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE 276
             VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE
Sbjct:   211 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE 270

Query:   277 MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN 336
             MIESGVIKLGDKQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN
Sbjct:   271 MIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN 330

Query:   337 IFRFTQVS 344
             IFRFTQ +
Sbjct:   331 IFRFTQAN 338

GO:0005524 "ATP binding" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEP;ISS

TAIR|locus:505006590 AT5G08690 [Arabidopsis thaliana (taxid:3702)]

 Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
 Identities = 243/316 (76%), Positives = 272/316 (86%)

Query:    31 SPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQV 90
             SP+  R A+P  +LL RV+EY               S       GK T ++ GKGAIG+V
Sbjct:    31 SPSPARHAAPCSYLLGRVAEYATSSPASSAA----PSSAPAKDEGKKTYDYGGKGAIGRV 86

Query:    91 CQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVR 148
             CQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVR
Sbjct:    87 CQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVR 146

Query:   149 GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQ 208
             G++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+
Sbjct:   147 GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQE 206

Query:   209 ILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268
             IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR
Sbjct:   207 ILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 266

Query:   269 EGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQ 328
             EGNDLYREMIESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAEGQ
Sbjct:   267 EGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQ 326

Query:   329 DVLLFIDNIFRFTQVS 344
             DVLLFIDNIFRFTQ +
Sbjct:   327 DVLLFIDNIFRFTQAN 342

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:504956338 AT5G08680 [Arabidopsis thaliana (taxid:3702)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 243/318 (76%), Positives = 271/318 (85%)

Query:    29 VFSPAATRRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIG 88
             + SP     A+P G LL RV+EY               S       GK T ++ GKGAIG
Sbjct:    32 LLSPGPAHGAAPCGTLLGRVAEYSTSSPANSAA----PSSAPAKDEGKKTYDYGGKGAIG 87

Query:    89 QVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
             +VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGL
Sbjct:    88 RVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGL 147

Query:   147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
             VRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT 
Sbjct:   148 VRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATG 207

Query:   207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
             Q+IL TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER
Sbjct:   208 QEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 267

Query:   267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
             TREGNDLYREMIESGVIKLG+KQ++SKCALVYGQMNEPPGARARVGLTGLTVAE+FRDAE
Sbjct:   268 TREGNDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAE 327

Query:   327 GQDVLLFIDNIFRFTQVS 344
             GQDVLLFIDNIFRFTQ +
Sbjct:   328 GQDVLLFIDNIFRFTQAN 345

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

RGD|621368 Atp5b "ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
 Identities = 208/257 (80%), Positives = 226/257 (87%)

Query:    86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
             A GQ+  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEG
Sbjct:    59 ATGQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEG 118

Query:   146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
             LVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + 
Sbjct:   119 LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSV 178

Query:   206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
             EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGE
Sbjct:   179 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 238

Query:   266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
             RTREGNDLY EMIESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD 
Sbjct:   239 RTREGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 296

Query:   326 EGQDVLLFIDNIFRFTQ 342
             EGQDVLLFIDNIFRFTQ
Sbjct:   297 EGQDVLLFIDNIFRFTQ 313

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IDA

GO:0001525 "angiogenesis" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA;IMP

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006172 "ADP biosynthetic process" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=ISO;IDA

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=ISO

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISO

GO:0016887 "ATPase activity" evidence=ISO;IDA;IMP

GO:0030228 "lipoprotein particle receptor activity" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0042288 "MHC class I protein binding" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0043499 "eukaryotic cell surface binding" evidence=ISO

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IDA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISO

GO:0051453 "regulation of intracellular pH" evidence=ISO

UNIPROTKB|G3V6D3 Atp5b "ATP synthase subunit beta" [Rattus norvegicus (taxid:10116)]

 Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
 Identities = 208/257 (80%), Positives = 226/257 (87%)

Query:    86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
             A GQ+  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEG
Sbjct:    59 ATGQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEG 118

Query:   146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
             LVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + 
Sbjct:   119 LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSV 178

Query:   206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
             EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGE
Sbjct:   179 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 238

Query:   266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
             RTREGNDLY EMIESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD 
Sbjct:   239 RTREGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 296

Query:   326 EGQDVLLFIDNIFRFTQ 342
             EGQDVLLFIDNIFRFTQ
Sbjct:   297 EGQDVLLFIDNIFRFTQ 313

GO:0001525 "angiogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0051453 "regulation of intracellular pH" evidence=IEA

UNIPROTKB|P06576 ATP5B "ATP synthase subunit beta, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 207/257 (80%), Positives = 226/257 (87%)

Query:    86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
             A G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEG
Sbjct:    59 ATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEG 118

Query:   146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
             LVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + 
Sbjct:   119 LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSV 178

Query:   206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
             EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGE
Sbjct:   179 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 238

Query:   266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
             RTREGNDLY EMIESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD 
Sbjct:   239 RTREGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 296

Query:   326 EGQDVLLFIDNIFRFTQ 342
             EGQDVLLFIDNIFRFTQ
Sbjct:   297 EGQDVLLFIDNIFRFTQ 313

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0043499 "eukaryotic cell surface binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005215 "transporter activity" evidence=NAS

GO:0005759 "mitochondrial matrix" evidence=NAS;TAS

GO:0005754 "mitochondrial proton-transporting ATP synthase, catalytic core" evidence=NAS

GO:0006091 "generation of precursor metabolites and energy" evidence=NAS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0042288 "MHC class I protein binding" evidence=IDA

GO:0006754 "ATP biosynthetic process" evidence=IMP

GO:0009986 "cell surface" evidence=IDA

GO:0015992 "proton transport" evidence=IMP

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IMP

GO:0051453 "regulation of intracellular pH" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

MGI|MGI:107801 Atp5b "ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit" [Mus musculus (taxid:10090)]

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 207/257 (80%), Positives = 226/257 (87%)

Query:    86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
             A G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEG
Sbjct:    59 ATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRDSRLVLEVAQHLGESTVRTIAMDGTEG 118

Query:   146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
             LVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + 
Sbjct:   119 LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSV 178

Query:   206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
             EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGE
Sbjct:   179 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 238

Query:   266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
             RTREGNDLY EMIESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD 
Sbjct:   239 RTREGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 296

Query:   326 EGQDVLLFIDNIFRFTQ 342
             EGQDVLLFIDNIFRFTQ
Sbjct:   297 EGQDVLLFIDNIFRFTQ 313

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISO

GO:0001525 "angiogenesis" evidence=ISO

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO;IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006172 "ADP biosynthetic process" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0006754 "ATP biosynthetic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IMP

GO:0009986 "cell surface" evidence=ISO

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030228 "lipoprotein particle receptor activity" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0043499 "eukaryotic cell surface binding" evidence=ISO

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=ISO

GO:0051453 "regulation of intracellular pH" evidence=ISO

UNIPROTKB|F1PDB4 ATP5B "ATP synthase subunit beta" [Canis lupus familiaris (taxid:9615)]

 Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
 Identities = 207/257 (80%), Positives = 225/257 (87%)

Query:    86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
             A G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEG
Sbjct:    58 ATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEG 117

Query:   146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
             LVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + 
Sbjct:   118 LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSV 177

Query:   206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
             EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGE
Sbjct:   178 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 237

Query:   266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
             RTREGNDLY EMIESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD 
Sbjct:   238 RTREGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 295

Query:   326 EGQDVLLFIDNIFRFTQ 342
             EGQDVLLFIDNIFRFTQ
Sbjct:   296 EGQDVLLFIDNIFRFTQ 312

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|P00829 ATP5B "ATP synthase subunit beta, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 206/255 (80%), Positives = 224/255 (87%)

Query:    88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
             G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLV
Sbjct:    61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120

Query:   148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
             RGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ
Sbjct:   121 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 180

Query:   208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
             +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct:   181 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 240

Query:   268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
             REGNDLY EMIESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct:   241 REGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 298

Query:   328 QDVLLFIDNIFRFTQ 342
             QDVLLFIDNIFRFTQ
Sbjct:   299 QDVLLFIDNIFRFTQ 313

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|F1SLA0 ATP5B "ATP synthase subunit beta" [Sus scrofa (taxid:9823)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 206/257 (80%), Positives = 225/257 (87%)

Query:    86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
             A G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEG
Sbjct:    59 ATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEG 118

Query:   146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
             LVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP F+E + 
Sbjct:   119 LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFMEMSV 178

Query:   206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
             EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGE
Sbjct:   179 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 238

Query:   266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
             RTREGNDLY EMIESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD 
Sbjct:   239 RTREGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 296

Query:   326 EGQDVLLFIDNIFRFTQ 342
             EGQDVLLFIDNIFRFTQ
Sbjct:   297 EGQDVLLFIDNIFRFTQ 313

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0043499 "eukaryotic cell surface binding" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0042288 "MHC class I protein binding" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0006933 "negative regulation of cell adhesion involved in substrate-bound cell migration" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0C100	ATPB_HYPNA	3, ., 6, ., 3, ., 1, 4	0.7372	0.7241	0.5305	yes	no
P19023	ATPBM_MAIZE	3, ., 6, ., 3, ., 1, 4	0.8226	0.9741	0.6130	N/A	no
P10719	ATPB_RAT	3, ., 6, ., 3, ., 1, 4	0.7180	0.8304	0.5463	yes	no
Q2J3I4	ATPB_RHOP2	3, ., 6, ., 3, ., 1, 4	0.7529	0.7270	0.5315	yes	no
C3M9S1	ATPB_RHISN	3, ., 6, ., 3, ., 1, 4	0.7799	0.7356	0.5069	yes	no
P17614	ATPBM_NICPL	3, ., 6, ., 3, ., 1, 4	0.8137	0.9798	0.6089	N/A	no
P00829	ATPB_BOVIN	3, ., 6, ., 3, ., 1, 4	0.8078	0.7270	0.4791	yes	no
Q3SVJ1	ATPB_NITWN	3, ., 6, ., 3, ., 1, 4	0.7394	0.7442	0.5441	yes	no
Q4FP38	ATPB_PELUB	3, ., 6, ., 3, ., 1, 4	0.7686	0.7270	0.5360	yes	no
Q92LK8	ATPB_RHIME	3, ., 6, ., 3, ., 1, 4	0.7876	0.7356	0.5079	yes	no
Q01859	ATPBM_ORYSJ	3, ., 6, ., 3, ., 1, 4	0.8115	0.9683	0.6105	yes	no
Q05825	ATPB_DROME	3, ., 6, ., 3, ., 1, 4	0.7921	0.7270	0.5009	yes	no
Q6NDD2	ATPB_RHOPA	3, ., 6, ., 3, ., 1, 4	0.7607	0.7270	0.5315	yes	no
Q1QQS8	ATPB_NITHX	3, ., 6, ., 3, ., 1, 4	0.7529	0.7270	0.5315	yes	no
A3PIB9	ATPB1_RHOS1	3, ., 6, ., 3, ., 1, 4	0.7647	0.7298	0.5347	yes	no
B6JD09	ATPB_OLICO	3, ., 6, ., 3, ., 1, 4	0.7578	0.7298	0.5336	yes	no
Q07UZ5	ATPB_RHOP5	3, ., 6, ., 3, ., 1, 4	0.7568	0.7270	0.5315	yes	no
Q13DP2	ATPB_RHOPS	3, ., 6, ., 3, ., 1, 4	0.7568	0.7270	0.5315	yes	no
A6UDM1	ATPB_SINMW	3, ., 6, ., 3, ., 1, 4	0.7837	0.7356	0.5029	yes	no
P83483	ATPBM_ARATH	3, ., 6, ., 3, ., 1, 4	0.7694	0.9051	0.5665	yes	no
P46561	ATPB_CAEEL	3, ., 6, ., 3, ., 1, 4	0.7528	0.7614	0.4925	yes	no
Q21CY7	ATPB_RHOPB	3, ., 6, ., 3, ., 1, 4	0.7529	0.7270	0.5315	yes	no
P05038	ATPB_RHORU	3, ., 6, ., 3, ., 1, 4	0.7423	0.7356	0.5400	yes	no
P83484	ATPBN_ARATH	3, ., 6, ., 3, ., 1, 4	0.7694	0.9051	0.5665	yes	no
Q9C5A9	ATPBO_ARATH	3, ., 6, ., 3, ., 1, 4	0.7763	0.9022	0.5617	yes	no
Q3J431	ATPB1_RHOS4	3, ., 6, ., 3, ., 1, 4	0.7647	0.7298	0.5347	yes	no
B3PQ68	ATPB_RHIE6	3, ., 6, ., 3, ., 1, 4	0.7782	0.7327	0.5368	yes	no
P72247	ATPB_RHOCA	3, ., 6, ., 3, ., 1, 4	0.7490	0.7298	0.5381	yes	no
Q5ZLC5	ATPB_CHICK	3, ., 6, ., 3, ., 1, 4	0.8039	0.7270	0.4746	yes	no
Q8UC76	ATPB_AGRT5	3, ., 6, ., 3, ., 1, 4	0.7259	0.7643	0.5495	yes	no
P00830	ATPB_YEAST	3, ., 6, ., 3, ., 1, 4	0.7421	0.7241	0.4931	yes	no
P56480	ATPB_MOUSE	3, ., 6, ., 3, ., 1, 4	0.8054	0.7327	0.4820	yes	no
Q1MAZ2	ATPB_RHIL3	3, ., 6, ., 3, ., 1, 4	0.7751	0.7356	0.5355	yes	no
Q2RV18	ATPB_RHORT	3, ., 6, ., 3, ., 1, 4	0.7423	0.7356	0.5400	yes	no
P06576	ATPB_HUMAN	3, ., 6, ., 3, ., 1, 4	0.8023	0.7356	0.4839	yes	no
P22068	ATPB_SCHPO	3, ., 6, ., 3, ., 1, 4	0.7480	0.7241	0.48	yes	no
Q2K3H0	ATPB_RHIEC	3, ., 6, ., 3, ., 1, 4	0.7743	0.7327	0.5368	yes	no
B5ZSN7	ATPB_RHILW	3, ., 6, ., 3, ., 1, 4	0.7751	0.7356	0.5355	yes	no
A7HT52	ATPB_PARL1	3, ., 6, ., 3, ., 1, 4	0.7471	0.7356	0.5355	yes	no
A7IH31	ATPB_XANP2	3, ., 6, ., 3, ., 1, 4	0.7461	0.7327	0.5334	yes	no
A4WUM7	ATPB_RHOS5	3, ., 6, ., 3, ., 1, 4	0.7411	0.7298	0.5347	yes	no
A6WXX1	ATPB_OCHA4	3, ., 6, ., 3, ., 1, 4	0.7606	0.7356	0.4951	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
PRK09280	463	PRK09280, PRK09280, F0F1 ATP synthase subunit beta	1e-178
COG0055	468	COG0055, AtpD, F0F1-type ATP synthase, beta subuni	1e-159
TIGR01039	461	TIGR01039, atpD, ATP synthase, F1 beta subunit	1e-147
CHL00060	494	CHL00060, atpB, ATP synthase CF1 beta subunit	1e-139
PRK12597	461	PRK12597, PRK12597, F0F1 ATP synthase subunit beta	1e-127
cd01133	274	cd01133, F1-ATPase_beta, F1 ATP synthase beta subu	1e-125
TIGR03305	449	TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase,	5e-92
pfam00006	213	pfam00006, ATP-synt_ab, ATP synthase alpha/beta fa	4e-40
COG1157	441	COG1157, FliI, Flagellar biosynthesis/type III sec	3e-38
cd01136	326	cd01136, ATPase_flagellum-secretory_path_III, Flag	6e-33
TIGR03496	411	TIGR03496, FliI_clade1, flagellar protein export A	2e-31
TIGR02546	422	TIGR02546, III_secr_ATP, type III secretion appara	1e-30
TIGR03498	418	TIGR03498, FliI_clade3, flagellar protein export A	1e-30
TIGR01026	440	TIGR01026, fliI_yscN, ATPase FliI/YscN family	8e-30
TIGR03497	413	TIGR03497, FliI_clade2, flagellar protein export A	2e-29
PRK06002	450	PRK06002, fliI, flagellum-specific ATP synthase; V	5e-25
PRK13343	502	PRK13343, PRK13343, F0F1 ATP synthase subunit alph	8e-25
PRK06936	439	PRK06936, PRK06936, type III secretion system ATPa	3e-24
PRK08472	434	PRK08472, fliI, flagellum-specific ATP synthase; V	4e-24
TIGR00962	501	TIGR00962, atpA, proton translocating ATP synthase	2e-23
PRK08927	442	PRK08927, fliI, flagellum-specific ATP synthase; V	6e-23
PRK09099	441	PRK09099, PRK09099, type III secretion system ATPa	2e-22
PRK06820	440	PRK06820, PRK06820, type III secretion system ATPa	3e-22
PRK08149	428	PRK08149, PRK08149, ATP synthase SpaL; Validated	7e-22
PRK06315	442	PRK06315, PRK06315, type III secretion system ATPa	5e-21
PRK08972	444	PRK08972, fliI, flagellum-specific ATP synthase; V	2e-19
PRK07594	433	PRK07594, PRK07594, type III secretion system ATPa	2e-19
PRK05688	451	PRK05688, fliI, flagellum-specific ATP synthase; V	5e-19
COG0056	504	COG0056, AtpA, F0F1-type ATP synthase, alpha subun	7e-19
PRK07721	438	PRK07721, fliI, flagellum-specific ATP synthase; V	9e-19
PRK06793	432	PRK06793, fliI, flagellum-specific ATP synthase; V	1e-18
TIGR03324	497	TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase,	3e-18
cd01132	274	cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, c	4e-18
PRK05922	434	PRK05922, PRK05922, type III secretion system ATPa	2e-17
PRK07196	434	PRK07196, fliI, flagellum-specific ATP synthase; V	4e-16
pfam02874	69	pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta	2e-15
PRK09281	502	PRK09281, PRK09281, F0F1 ATP synthase subunit alph	2e-15
pfam11421	48	pfam11421, Synthase_beta, ATP synthase F1 beta sub	4e-14
COG1156	463	COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase su	1e-13
TIGR01041	458	TIGR01041, ATP_syn_B_arch, ATP synthase archaeal,	2e-12
PRK04196	460	PRK04196, PRK04196, V-type ATP synthase subunit B;	5e-12
TIGR01043	578	TIGR01043, ATP_syn_A_arch, ATP synthase archaeal,	1e-11
COG1155	588	COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase su	5e-11
cd01135	276	cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-	6e-11
cd01120	165	cd01120, RecA-like_NTPases, RecA-like NTPases	8e-11
PTZ00185	574	PTZ00185, PTZ00185, ATPase alpha subunit; Provisio	2e-10
cd01134	369	cd01134, V_A-ATPase_A, V/A-type ATP synthase catal	5e-09
CHL00059	485	CHL00059, atpA, ATP synthase CF1 alpha subunit	9e-09
PRK07960	455	PRK07960, fliI, flagellum-specific ATP synthase; V	1e-08
TIGR01042	591	TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A	6e-08
TIGR01040	466	TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B	2e-07
PRK02118	436	PRK02118, PRK02118, V-type ATP synthase subunit B;	5e-07
PRK04192	586	PRK04192, PRK04192, V-type ATP synthase subunit A;	2e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-04
PRK14698	1017	PRK14698, PRK14698, V-type ATP synthase subunit A;	3e-04
PRK14698	1017	PRK14698, PRK14698, V-type ATP synthase subunit A;	7e-04

>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated

 Score =  502 bits (1295), Expect = e-178
 Identities = 182/260 (70%), Positives = 208/260 (80%), Gaps = 10/260 (3%)

Query: 85  GAIGQVCQVIGAVVDVRFDEG-LPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDG 142
              G++ QVIG VVDV F  G LP I  ALEV      +LVLEVAQH+G+GVVRTIAM  
Sbjct: 1   MNTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGS 60

Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVE 202
           T+GLVRG  V++TG+PI+VPVG+ TLGRI NV+GEPIDEKG +  E   PIHR+AP+F E
Sbjct: 61  TDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEE 120

Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262
            +T+ +IL TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK HGG+SVFAG
Sbjct: 121 LSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG 180

Query: 263 VGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322
           VGERTREGNDLY EM ESGV+         K ALV+GQMNEPPGAR RV LTGLT+AE+F
Sbjct: 181 VGERTREGNDLYHEMKESGVLD--------KTALVFGQMNEPPGARLRVALTGLTMAEYF 232

Query: 323 RDAEGQDVLLFIDNIFRFTQ 342
           RD EGQDVLLFIDNIFRFTQ
Sbjct: 233 RDVEGQDVLLFIDNIFRFTQ 252

Length = 463

>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy production and conversion]

 Score =  452 bits (1166), Expect = e-159
 Identities = 186/272 (68%), Positives = 212/272 (77%), Gaps = 17/272 (6%)

Query: 85  GAIGQVCQVIGAVVDVRFDEG--LPPILTALEVVDHSVR-LVLEVAQHMGEGVVRTIAMD 141
              G+V QVIG VVDV F E   LP I  ALEV + +   LVLEVAQH+G+ VVRTIAM 
Sbjct: 1   MNKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMG 60

Query: 142 GTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEH--YLPIHREAPA 199
            T+GLVRG  V++TG PI+VPVG+ TLGRI NV+GEPIDEKG +K E     PIHR+AP+
Sbjct: 61  STDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPS 120

Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
           F E +T+ +IL TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK HGG+SV
Sbjct: 121 FEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSV 180

Query: 260 FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319
           FAGVGERTREGNDLY EM ESGV+         K ALV+GQMNEPPGAR RV LTGLT+A
Sbjct: 181 FAGVGERTREGNDLYHEMKESGVL--------DKTALVFGQMNEPPGARMRVALTGLTMA 232

Query: 320 EHFRDAEGQDVLLFIDNIFRFTQ----VSFIL 347
           E+FRD EGQDVLLFIDNIFRFTQ    VS +L
Sbjct: 233 EYFRDEEGQDVLLFIDNIFRFTQAGSEVSALL 264

Length = 468

>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit

 Score =  424 bits (1091), Expect = e-147
 Identities = 180/259 (69%), Positives = 207/259 (79%), Gaps = 10/259 (3%)

Query: 86  AIGQVCQVIGAVVDVRFDEG-LPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGT 143
             G+V QVIG VVDV F++G LP I  AL+V       L LEVAQH+G+  VRTIAM  T
Sbjct: 1   TKGKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGST 60

Query: 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQ 203
           +GLVRG  V++TG+PI+VPVG+ TLGRI NV+GEPIDEKG +  +   PIHR+AP+F EQ
Sbjct: 61  DGLVRGLEVIDTGAPISVPVGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQ 120

Query: 204 ATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263
           +T+ +IL TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK HGG+SVFAGV
Sbjct: 121 STKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGV 180

Query: 264 GERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323
           GERTREGNDLY EM ESGVI         K ALVYGQMNEPPGAR RV LTGLT+AE+FR
Sbjct: 181 GERTREGNDLYHEMKESGVID--------KTALVYGQMNEPPGARMRVALTGLTMAEYFR 232

Query: 324 DAEGQDVLLFIDNIFRFTQ 342
           D +GQDVLLFIDNIFRFTQ
Sbjct: 233 DEQGQDVLLFIDNIFRFTQ 251

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit [Energy metabolism, ATP-proton motive force interconversion]. Length = 461

>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit

 Score =  405 bits (1042), Expect = e-139
 Identities = 167/262 (63%), Positives = 195/262 (74%), Gaps = 7/262 (2%)

Query: 87  IGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAM 140
           +G++ Q+IG V+DV F  G +P I  AL V         + +  EV Q +G   VR +AM
Sbjct: 16  LGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAM 75

Query: 141 DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
             T+GL+RG  V++TG+P++VPVG  TLGRI NV+GEP+D  G + T    PIHR APAF
Sbjct: 76  SATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAF 135

Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
           ++  T+  I  TGIKVVDLLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAHGG SVF
Sbjct: 136 IQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVF 195

Query: 261 AGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320
            GVGERTREGNDLY EM ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT+AE
Sbjct: 196 GGVGERTREGNDLYMEMKESGVINE-QNIAESKVALVYGQMNEPPGARMRVGLTALTMAE 254

Query: 321 HFRDAEGQDVLLFIDNIFRFTQ 342
           +FRD   QDVLLFIDNIFRF Q
Sbjct: 255 YFRDVNKQDVLLFIDNIFRFVQ 276

Length = 494

>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional

 Score =  371 bits (955), Expect = e-127
 Identities = 156/266 (58%), Positives = 184/266 (69%), Gaps = 13/266 (4%)

Query: 87  IGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
           IG++ ++ G VVDV F+EG LPPI  AL V D     +LEV QH+ E  VR IA+  T G
Sbjct: 3   IGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSG 62

Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
           L RG  V NTG PI VPVG   LGR+++V+GEP+D    L  E   PIH   P   EQ T
Sbjct: 63  LARGDEVRNTGGPIEVPVGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDT 122

Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
             +IL TGIKV+DLL P  +GGK GLFGGAGVGKTVL+MELI N++K H G SVFAGVGE
Sbjct: 123 STEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGE 182

Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
           R+REG++LY EM ESGV+         K  +VYGQMNEPPGAR RV LTGLT+AE+ RD 
Sbjct: 183 RSREGHELYHEMKESGVLD--------KTVMVYGQMNEPPGARMRVVLTGLTIAEYLRDE 234

Query: 326 EGQDVLLFIDNIFRFTQ----VSFIL 347
           E +DVLLFIDNIFRF Q    VS +L
Sbjct: 235 EKEDVLLFIDNIFRFVQAGSEVSGLL 260

Length = 461

>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit, nucleotide-binding domain

 Score =  361 bits (928), Expect = e-125
 Identities = 146/185 (78%), Positives = 161/185 (87%), Gaps = 8/185 (4%)

Query: 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVV 217
           PI+VPVG  TLGRI NV+GEPIDE+G +KT+   PIHREAP FVEQ+T+ +IL TGIKV+
Sbjct: 1   PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVI 60

Query: 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM 277
           DLLAPY +GGKIGLFGGAGVGKTVLIMELINN+AKAHGG+SVFAGVGERTREGNDLY EM
Sbjct: 61  DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEM 120

Query: 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNI 337
            ESGV+        SK ALVYGQMNEPPGARARV LTGLT+AE+FRD EGQDVLLFIDNI
Sbjct: 121 KESGVL--------SKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNI 172

Query: 338 FRFTQ 342
           FRFTQ
Sbjct: 173 FRFTQ 177

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic. Length = 274

>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta

 Score =  281 bits (721), Expect = 5e-92
 Identities = 124/255 (48%), Positives = 164/255 (64%), Gaps = 9/255 (3%)

Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G V  V G++VDVRFD  LP I + L        +V+EV   +    VR IA+  T+GL 
Sbjct: 1   GHVVAVRGSIVDVRFDGELPAIHSVLRAGREG-EVVVEVLSQLDAHHVRGIALTPTQGLA 59

Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
           RG  V ++G P+  PVG+ TL R+ +V G  ID +   K   +  +H+  P    ++++ 
Sbjct: 60  RGMPVRDSGGPLKAPVGKPTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKS 119

Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
           ++  TGIK +D+L P +RGGK GLFGGAGVGKTVL+ E+I+N+   H G S+F G+GER 
Sbjct: 120 EVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERC 179

Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
           REG +LYREM E+GV+            +V+GQMNEPPGAR RVG T LT+AE+FRD E 
Sbjct: 180 REGEELYREMKEAGVL--------DNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEK 231

Query: 328 QDVLLFIDNIFRFTQ 342
           QDVLL IDNIFRF Q
Sbjct: 232 QDVLLLIDNIFRFIQ 246

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase. Length = 449

>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain

 Score =  140 bits (355), Expect = 4e-40
 Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 11/132 (8%)

Query: 212 TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGN 271
           TGI+ +DLL P  +G +IG+FGG+G GKTVL+  +  N         V+  +GER RE  
Sbjct: 1   TGIRAIDLLLPIGKGQRIGIFGGSGTGKTVLLGMIARNAKA--DVVEVYVLIGERGREVA 58

Query: 272 DLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVL 331
           +   E++  G +K        +  +V    +EPP  R     T LT+AE+FRD +G+DVL
Sbjct: 59  EFIEELLGEGALK--------RTVVVAATSDEPPAERYLAPYTALTIAEYFRD-QGKDVL 109

Query: 332 LFIDNIFRFTQV 343
           L +D++ RF + 
Sbjct: 110 LLLDSLTRFARA 121

This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. Length = 213

>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

 Score =  141 bits (357), Expect = 3e-38
 Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 12/199 (6%)

Query: 142 GTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFV 201
             EG+  G  V+ TG P++VPVG   LGR+++ +G P+D  G        P+    P  +
Sbjct: 79  PVEGVSPGAEVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPL 138

Query: 202 EQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261
           ++   ++ L TG++ +D L    +G +IG+F G+GVGK+ L + +I    +A    +V A
Sbjct: 139 KRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKSTL-LGMIARNTEAD--VNVIA 195

Query: 262 GVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321
            +GER RE     RE IE     LG++    +  +V    +E    R +   T  T+AE+
Sbjct: 196 LIGERGRE----VREFIEK---DLGEEGL-KRSVVVVATSDESALMRLKAAFTATTIAEY 247

Query: 322 FRDAEGQDVLLFIDNIFRF 340
           FRD +G+ VLL +D++ RF
Sbjct: 248 FRD-QGKRVLLIMDSLTRF 265

Length = 441

>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein

 Score =  124 bits (313), Expect = 6e-33
 Identities = 66/183 (36%), Positives = 104/183 (56%), Gaps = 12/183 (6%)

Query: 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVV 217
           P++VPVG   LGR+++  GEP+D KG L  E   P+ R  P  +++    ++L TG++ +
Sbjct: 1   PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAI 60

Query: 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREM 277
           D L    +G ++G+F G+GVGK+ L + +I     A    +V A +GER RE     RE 
Sbjct: 61  DGLLTVGKGQRLGIFAGSGVGKSTL-LGMIARGTTAD--VNVIALIGERGRE----VREF 113

Query: 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNI 337
           IE  + + G K    +  +V    +E P  R +   T   +AE+FRD +G+DVLL +D++
Sbjct: 114 IEKDLGEEGLK----RSVVVVATSDESPLLRVKAAYTATAIAEYFRD-QGKDVLLLMDSL 168

Query: 338 FRF 340
            RF
Sbjct: 169 TRF 171

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. Length = 326

>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI

 Score =  121 bits (307), Expect = 2e-31
 Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 14/209 (6%)

Query: 136 RTIAM--DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPI 193
           R + M  +  EGL  G RV     P+ +PVG   LGR+++ +G P+D KG L     +P+
Sbjct: 45  RVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLLGRVIDGLGRPLDGKGPLDAGERVPL 104

Query: 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253
           +      +++A   + L  G++ ++ L    RG ++G+F G+GVGK+ L + ++    +A
Sbjct: 105 YAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTL-LGMMARYTEA 163

Query: 254 HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
                V   +GER RE     +E IE     LG++   ++  +V    +E P  R R   
Sbjct: 164 D--VVVVGLIGERGRE----VKEFIED---ILGEEGL-ARSVVVAATADESPLMRLRAAF 213

Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
               +AE+FRD +G+DVLL +D++ RF  
Sbjct: 214 YATAIAEYFRD-QGKDVLLLMDSLTRFAM 241

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively [Cellular processes, Chemotaxis and motility]. Length = 411

>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus H+-transporting two-sector ATPase

 Score =  120 bits (302), Expect = 1e-30
 Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 14/198 (7%)

Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEH--YLPIHREAPAFVE 202
           G+  G  V+ TG P+++ VG   LGR+++  G P+D KG+L        P+  + P  + 
Sbjct: 62  GISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMS 121

Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262
           +    Q L TG++ +D L     G +IG+F GAGVGK+ L+  +    A A    +V A 
Sbjct: 122 RQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARG-ASAD--VNVIAL 178

Query: 263 VGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322
           +GER RE     RE IE        ++   +  LV    + P   R +   T   +AE+F
Sbjct: 179 IGERGRE----VREFIE----HHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYF 230

Query: 323 RDAEGQDVLLFIDNIFRF 340
           RD +G+ VLL +D++ RF
Sbjct: 231 RD-QGKRVLLMMDSLTRF 247

[Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 422

>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI

 Score =  119 bits (301), Expect = 1e-30
 Identities = 84/258 (32%), Positives = 128/258 (49%), Gaps = 21/258 (8%)

Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVR----LVLEVAQHMGEGVVRTIAMDGT 143
           G+V  V G +++VR   GL   +   +      R    ++ EV    G+ V+  +  +  
Sbjct: 1   GRVTAVTGLLIEVR---GLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVL-LMPFEPL 56

Query: 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKT-EHYLPIHREAPAFVE 202
           EG+  G  V     P+ V      LGR++N +GEPID KG L   E   P+    P  + 
Sbjct: 57  EGVGLGCAVFAREGPLAVRPHPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMS 116

Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262
           +A   + L TG++V+D   P  RG ++G+F G+GVGK+ L+  L  N         V A 
Sbjct: 117 RARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSMLARN---TDADVVVIAL 173

Query: 263 VGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322
           VGER RE     RE +E     LG++    +  +V    +E P  R +   T   +AE+F
Sbjct: 174 VGERGRE----VREFLED---DLGEEGL-KRSVVVVATSDESPLMRRQAAYTATAIAEYF 225

Query: 323 RDAEGQDVLLFIDNIFRF 340
           RD +G+DVLL +D++ RF
Sbjct: 226 RD-QGKDVLLLMDSVTRF 242

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. Length = 418

>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family

 Score =  117 bits (296), Expect = 8e-30
 Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 14/221 (6%)

Query: 121 RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPID 180
           RLV EV    GE V      +  EG+  G +VL TG  +++ VG   LGR+++ +G+PID
Sbjct: 58  RLVAEVVGFNGEFVFLM-PYEEVEGVRPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPID 116

Query: 181 EKGD-LKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239
            KG  L       +       +++A  ++IL TG++ +D L    +G +IG+F G+GVGK
Sbjct: 117 GKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGK 176

Query: 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299
           + L + +I    +A    +V A +GER RE     RE IE     LG ++   +  +V  
Sbjct: 177 STL-LGMIARNTEAD--VNVIALIGERGRE----VREFIEH---DLG-EEGLKRSVVVVA 225

Query: 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340
             ++ P  R +       +AE+FRD +G+DVLL +D++ RF
Sbjct: 226 TSDQSPLLRLKGAYVATAIAEYFRD-QGKDVLLLMDSVTRF 265

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins [Energy metabolism, ATP-proton motive force interconversion]. Length = 440

>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI

 Score =  117 bits (294), Expect = 2e-29
 Identities = 70/211 (33%), Positives = 115/211 (54%), Gaps = 12/211 (5%)

Query: 132 EGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYL 191
           E  V  + +   EG+  G  V+ TG P+ + VG+  LGR+++ +G P+D +G +  E   
Sbjct: 43  EENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPY 102

Query: 192 PIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA 251
           P+    P  +++   +  L TGIK +D L    +G ++G+F G+GVGK+ L + +I   A
Sbjct: 103 PLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTL-LGMIARNA 161

Query: 252 KAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARV 311
           KA    +V A +GER RE     R+ IE  + + G K    +  +V    ++P   R + 
Sbjct: 162 KA--DINVIALIGERGRE----VRDFIEKDLGEEGLK----RSVVVVATSDQPALMRLKA 211

Query: 312 GLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
             T   +AE+FRD +G+DVLL +D++ RF  
Sbjct: 212 AFTATAIAEYFRD-QGKDVLLMMDSVTRFAM 241

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively [Cellular processes, Chemotaxis and motility]. Length = 413

>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated

 Score =  104 bits (262), Expect = 5e-25
 Identities = 66/175 (37%), Positives = 92/175 (52%), Gaps = 18/175 (10%)

Query: 169 GRIMNVIGEPIDEKGDLKT-EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 227
           GR++N +GEPID  G L      + I   AP  + +A  +  L TG++V+D+  P   G 
Sbjct: 107 GRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQ 166

Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFS--VFAGVGERTREGNDLYREMIESGVIKL 285
           +IG+F G+GVGK+ L+  L    A+A   F   V A VGER RE     RE +E     L
Sbjct: 167 RIGIFAGSGVGKSTLLAML----ARAD-AFDTVVIALVGERGRE----VREFLED---TL 214

Query: 286 GDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340
            D     K   V    +E P  R    LT   +AE+FRD  G++VLL +D++ RF
Sbjct: 215 ADNL--KKAVAVVATSDESPMMRRLAPLTATAIAEYFRDR-GENVLLIVDSVTRF 266

Length = 450

>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional

 Score =  104 bits (262), Expect = 8e-25
 Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 10/210 (4%)

Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
            A ++ E +V  + +D T  ++ G  V  TG  + VPVG   LGR+++ +G P+D  G L
Sbjct: 62  FAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPL 121

Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
           +     P+ R APA +E+    + L TGIKVVD L P  RG +  + G    GKT + ++
Sbjct: 122 QATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAID 181

Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
            I N  K      V+  +G++           +   +  L +  A     +V  + ++PP
Sbjct: 182 AIIN-QKDSDVICVYVAIGQK--------ASAVARVIETLREHGALEYTTVVVAEASDPP 232

Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFID 335
           G +      G  +AE+FRD +GQD L+  D
Sbjct: 233 GLQYLAPFAGCAIAEYFRD-QGQDALIVYD 261

Length = 502

>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional

 Score =  102 bits (256), Expect = 3e-24
 Identities = 86/261 (32%), Positives = 130/261 (49%), Gaps = 29/261 (11%)

Query: 88  GQVCQVIG----AVVD-VRFDEGLPPILTALEVVDHSVRLVLEV---AQHMGEGVVRTIA 139
           G+V QV G    AVV  VR  E     L  L   D+S+ L  EV   AQH          
Sbjct: 25  GRVTQVTGTILKAVVPGVRIGE-----LCYLRNPDNSLSLQAEVIGFAQH----QALLTP 75

Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
           +    G+     V  TG+   V VG   LGR+++ +G+P D     +   + P++ +APA
Sbjct: 76  LGEMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPA 135

Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
            + +   +  L  G++V+D L     G ++G+F  AG GK+ L+  LI +   A    +V
Sbjct: 136 PMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRS---AEVDVTV 192

Query: 260 FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319
            A +GER RE     RE IES + + G ++A     LV    + P   RA+ G    ++A
Sbjct: 193 LALIGERGRE----VREFIESDLGEEGLRKA----VLVVATSDRPSMERAKAGFVATSIA 244

Query: 320 EHFRDAEGQDVLLFIDNIFRF 340
           E+FRD +G+ VLL +D++ RF
Sbjct: 245 EYFRD-QGKRVLLLMDSVTRF 264

Length = 439

>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated

 Score =  102 bits (255), Expect = 4e-24
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 21/229 (9%)

Query: 120 VRLVLEVAQHMGEGVVRTIAMDG--------TEGLVRGQRVLNTGSPITVPVGRVTLGRI 171
           V++          G+V  I  +          EG   G +V  +   + +PVGR  LGR+
Sbjct: 43  VKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNIPVGRNLLGRV 102

Query: 172 MNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL 231
           ++ +G PID KG +  E Y PI +   A +++    ++   G+K +D L    +G K+G+
Sbjct: 103 VDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGI 162

Query: 232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291
           F G+GVGK+ L M +I     A     V A +GER RE      E IE     LG    +
Sbjct: 163 FAGSGVGKSTL-MGMIVKGCLAP--IKVVALIGERGRE----IPEFIEK---NLGGDLEN 212

Query: 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340
               +V    ++ P  R       ++VAE+F++ +G DVL  +D++ RF
Sbjct: 213 --TVIVVATSDDSPLMRKYGAFCAMSVAEYFKN-QGLDVLFIMDSVTRF 258

Length = 434

>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit

 Score =  100 bits (251), Expect = 2e-23
 Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 19/265 (7%)

Query: 87  IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
           +G V  V   +  V    GL  +++  E+++     V  +A ++ E  V  + M     +
Sbjct: 27  VGTVVSVGDGIARV---YGLENVMSG-ELIEFEGG-VQGIALNLEEDSVGAVIMGDYSDI 81

Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
             G  V  TG  + VPVG   LGR++N +GEPID KG + ++ + P+ + AP  +E+ + 
Sbjct: 82  REGSTVKRTGRILEVPVGDGLLGRVVNALGEPIDGKGPIDSDEFSPVEKIAPGVIERKSV 141

Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
            + L TGIK +D + P  RG +  + G    GKT + ++ I N  K    + ++  +G++
Sbjct: 142 HEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAIDTIIN-QKDSDVYCIYVAIGQK 200

Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
                      +   V KL +  A +   +V    ++    +     TG T+ E+FRD  
Sbjct: 201 --------ASTVAQVVRKLEEHGAMAYTIVVAATASDSASLQYLAPYTGCTMGEYFRD-N 251

Query: 327 GQDVLLFIDNIFR----FTQVSFIL 347
           G+  L+  D++ +    + Q+S +L
Sbjct: 252 GKHALIIYDDLSKQAVAYRQISLLL 276

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit [Energy metabolism, ATP-proton motive force interconversion]. Length = 501

>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated

 Score = 98.5 bits (246), Expect = 6e-23
 Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 15/208 (7%)

Query: 136 RTIAM--DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL-KTEHYLP 192
           R + M     EG+ RG R +   +   V   R  LGR++N +GEPID KG L +     P
Sbjct: 65  RALLMPFGPLEGVRRGCRAVIANAAAAVRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYP 124

Query: 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252
           +    P    +A   + L  G++ ++      RG ++G+F G+GVGK+VL+  L  N   
Sbjct: 125 LRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADA 184

Query: 253 AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVG 312
                SV   +GER RE     +E ++     LG  +  ++  +V    +EP   R +  
Sbjct: 185 D---VSVIGLIGERGRE----VQEFLQD---DLGP-EGLARSVVVVATSDEPALMRRQAA 233

Query: 313 LTGLTVAEHFRDAEGQDVLLFIDNIFRF 340
              L +AE+FRD +G+DVL  +D++ RF
Sbjct: 234 YLTLAIAEYFRD-QGKDVLCLMDSVTRF 260

Length = 442

>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional

 Score = 97.1 bits (242), Expect = 2e-22
 Identities = 84/262 (32%), Positives = 125/262 (47%), Gaps = 31/262 (11%)

Query: 88  GQVCQVIGAV-----VDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAM-- 140
           G+V +VIG +     +DV   E     L  L   D ++    EV      G  R +A+  
Sbjct: 26  GKVVEVIGTLLRVSGLDVTLGE-----LCELRQRDGTLLQRAEVV-----GFSRDVALLS 75

Query: 141 --DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 198
                 GL RG RV+  G P++VPVG   LGR+++ +GEPID  G L  +  +P+    P
Sbjct: 76  PFGELGGLSRGTRVIGLGRPLSVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPP 135

Query: 199 AFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS 258
             + +   +  L TG+++VD L     G ++G+F  AGVGK+ L+              +
Sbjct: 136 DPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG---TQCDVN 192

Query: 259 VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318
           V A +GER RE     RE IE  + + G  ++   CA       E    RA+       +
Sbjct: 193 VIALIGERGRE----VREFIELILGEDGMARSVVVCATSDRSSIE----RAKAAYVATAI 244

Query: 319 AEHFRDAEGQDVLLFIDNIFRF 340
           AE+FRD  G  VLL +D++ RF
Sbjct: 245 AEYFRD-RGLRVLLMMDSLTRF 265

Length = 441

>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated

 Score = 96.8 bits (241), Expect = 3e-22
 Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 13/204 (6%)

Query: 141 DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
             ++GL  GQ V   G    V VG    GRI++ +G PID  G   T  +  +    P+ 
Sbjct: 79  ASSDGLRCGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDG-GPPLTGQWRELDCPPPSP 137

Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260
           + +   +Q+L TGI+ +D +     G +IG+F  AGVGK+ L+  L    A +     V 
Sbjct: 138 LTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGML---CADSAADVMVL 194

Query: 261 AGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320
           A +GER RE     RE +E  +      +A ++  +V    + P   R +   T  T+AE
Sbjct: 195 ALIGERGRE----VREFLEQVL----TPEARARTVVVVATSDRPALERLKGLSTATTIAE 246

Query: 321 HFRDAEGQDVLLFIDNIFRFTQVS 344
           +FRD  G+ VLL  D++ R+ + +
Sbjct: 247 YFRD-RGKKVLLMADSLTRYARAA 269

Length = 440

>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated

 Score = 95.4 bits (238), Expect = 7e-22
 Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 20/225 (8%)

Query: 123 VLEVAQHMGEGVVRTI--AMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPID 180
           V+  AQ +G    RTI   +   +GL R   +  TG P++V VG   LG +++  G+ I 
Sbjct: 42  VIARAQVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSVWVGEALLGAVLDPTGK-IV 100

Query: 181 EKGDLKTE-----HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235
           E+ D             I    P++ E+   ++ L+TG++ +D L     G ++G+F  A
Sbjct: 101 ERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASA 160

Query: 236 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
           G GKT L+  LI +   +     V   +GER RE      E +ES  ++   ++   KC 
Sbjct: 161 GCGKTSLMNMLIEH---SEADVFVIGLIGERGRE----VTEFVES--LRASSRR--EKCV 209

Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340
           LVY   +     R    L   TVAE+FRD +G+ V+LFID++ R+
Sbjct: 210 LVYATSDFSSVDRCNAALVATTVAEYFRD-QGKRVVLFIDSMTRY 253

Length = 428

>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional

 Score = 93.0 bits (231), Expect = 5e-21
 Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 14/201 (6%)

Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE--KGDL-KTEHYLPIHREAPAFV 201
           G+     V+ TG P+ +  G   LGR++N +GEPID   KG L   +   PI R  P  +
Sbjct: 80  GVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPL 139

Query: 202 EQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261
            +A  + IL TG++ +D +    RG +IG+F GAGVGK+ L+  +  N  +A    +V A
Sbjct: 140 HRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD--VNVIA 197

Query: 262 GVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321
            +GER RE     RE IE  + + G K    +  +V    ++    R      G  +AE+
Sbjct: 198 LIGERGRE----VREFIEGDLGEEGMK----RSVIVVSTSDQSSQLRLNAAYVGTAIAEY 249

Query: 322 FRDAEGQDVLLFIDNIFRFTQ 342
           FRD +G+ V+L +D++ RF +
Sbjct: 250 FRD-QGKTVVLMMDSVTRFAR 269

Length = 442

>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 14/199 (7%)

Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQA 204
           G++ G RV   G    +PVG   LGR+++ +G P+D  G + T+     H      + + 
Sbjct: 81  GVLPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRR 140

Query: 205 TEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI-MELINNVAKAHGGFSVFAGV 263
              + L  G++ ++ +    +G ++GLF G+GVGK+VL+ M      A       V   V
Sbjct: 141 PITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADV----IVVGLV 196

Query: 264 GERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323
           GER RE     +E IE     LG+ +  ++  +V    +  P  R +   T  T+AE+FR
Sbjct: 197 GERGRE----VKEFIEE---ILGE-EGRARSVVVAAPADTSPLMRLKGCETATTIAEYFR 248

Query: 324 DAEGQDVLLFIDNIFRFTQ 342
           D +G +VLL +D++ R+ Q
Sbjct: 249 D-QGLNVLLLMDSLTRYAQ 266

Length = 444

>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN; Validated

 Score = 88.1 bits (218), Expect = 2e-19
 Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 21/204 (10%)

Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGD----LKTEHYLPIHREAP 198
           T GL  GQ+V+       VPVG   LGR+++  G P+D +       K    +P     P
Sbjct: 73  TIGLHCGQQVMALRRRHQVPVGEALLGRVIDGFGRPLDGRELPDVCWKDYDAMP----PP 128

Query: 199 AFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS 258
           A V Q   Q  L+TGI+ +D +A    G ++G+F   GVGK+ L+  L N         +
Sbjct: 129 AMVRQPITQP-LMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCN---APDADSN 184

Query: 259 VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318
           V   +GER RE     RE I+  +     ++   +C +V    + P   R R      T+
Sbjct: 185 VLVLIGERGRE----VREFIDFTL----SEETRKRCVIVVATSDRPALERVRALFVATTI 236

Query: 319 AEHFRDAEGQDVLLFIDNIFRFTQ 342
           AE FRD  G+ V+L  D++ R+ +
Sbjct: 237 AEFFRD-NGKRVVLLADSLTRYAR 259

Length = 433

>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated

 Score = 87.1 bits (216), Expect = 5e-19
 Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 16/243 (6%)

Query: 104 EGLP-PILTALEVVDHSVRLVLEV-AQHMG--EGVVRTIAMDGTEGLVRGQRVLNTGSPI 159
           EGL   + +   V++      ++V A+ MG     V  + +    G+  G RV+      
Sbjct: 42  EGLRAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPLADTG 101

Query: 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDL 219
            +P+G   LGR+++  G  +D KG +K E ++P+       + +    + L  GI+ ++ 
Sbjct: 102 RLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSING 161

Query: 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
           L    RG ++GLF G GVGK+VL + ++    +A     V   +GER RE     +E IE
Sbjct: 162 LLTVGRGQRLGLFAGTGVGKSVL-LGMMTRFTEAD--IIVVGLIGERGRE----VKEFIE 214

Query: 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR 339
                LG+ +   +  +V    ++ P  R R  +    +AE+FRD +G++VLL +D++ R
Sbjct: 215 H---ILGE-EGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFRD-KGKNVLLLMDSLTR 269

Query: 340 FTQ 342
           F Q
Sbjct: 270 FAQ 272

Length = 451

>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

 Score = 86.9 bits (216), Expect = 7e-19
 Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 15/250 (6%)

Query: 86  AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
            +G V  V   +  V    GL  ++ A E+V+     V  +A ++ E  V  + +     
Sbjct: 27  EVGTVISVGDGIARV---SGLENVM-AGELVEFPGG-VKGMALNLEEDSVGAVILGDYSD 81

Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
           +  G  V  TG  + VPVG   LGR+++ +G PID KG +      P+ ++AP  +++ +
Sbjct: 82  IKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKS 141

Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
             + L TGIK +D L P  RG +  + G    GKT + ++ I N  K  G   ++  +G+
Sbjct: 142 VNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGSGVKCIYVAIGQ 200

Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
           +        R  + + V  L +  A     +V    ++    +      G  +AE+FRD 
Sbjct: 201 K--------RSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAGCAMAEYFRD- 251

Query: 326 EGQDVLLFID 335
            G+DVL+  D
Sbjct: 252 NGKDVLIVYD 261

Length = 504

>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated

 Score = 86.3 bits (214), Expect = 9e-19
 Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 12/192 (6%)

Query: 149 GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQ 208
           G  V  TG P+ V VG   +G++++ +GEP+D     K    +   ++ P  +++   ++
Sbjct: 81  GCLVEATGKPLEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIRE 140

Query: 209 ILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268
            +  G++ +D L    +G ++G+F G+GVGK+ L M +I     A    +V A +GER R
Sbjct: 141 PMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTL-MGMIARNTSAD--LNVIALIGERGR 197

Query: 269 EGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQ 328
           E     RE IE     LG  +   +  +V    ++P   R +   T   +AE+FRD +G 
Sbjct: 198 E----VREFIER---DLGP-EGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRD-QGL 248

Query: 329 DVLLFIDNIFRF 340
           +V+L +D++ R 
Sbjct: 249 NVMLMMDSVTRV 260

Length = 438

>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated

 Score = 85.8 bits (212), Expect = 1e-18
 Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 20/202 (9%)

Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP---A 199
           TE +  G  V      + +P G   LG++++  GE ++E+ +      + +  +AP   A
Sbjct: 73  TEKVCYGDSVTLIAEDVVIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKL--DAPPIHA 130

Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
           F E+     +  TGIK +D +     G KIG+F G+GVGK+ L+  +  N AKA    +V
Sbjct: 131 F-EREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKN-AKAD--INV 186

Query: 260 FAGVGERTREGNDLYR-EMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318
            + VGER RE  D  R E+ E G+          K  +V    +E    + R      ++
Sbjct: 187 ISLVGERGREVKDFIRKELGEEGM---------RKSVVVVATSDESHLMQLRAAKLATSI 237

Query: 319 AEHFRDAEGQDVLLFIDNIFRF 340
           AE+FRD +G +VLL +D++ RF
Sbjct: 238 AEYFRD-QGNNVLLMMDSVTRF 258

Length = 432

>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 18/219 (8%)

Query: 123 VLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK 182
           +L +A ++ E  V  + +     L  G  V  TG  + VPVG   LGR+++ +G P+D  
Sbjct: 59  LLGIAFNVDEDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGG 118

Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
           G L +   LPI R AP  +++A     L TG+KV+D L P  RG +  + G    GKT +
Sbjct: 119 GPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAI 178

Query: 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK----LGDKQADSKCALVY 298
            ++ I N  K      ++  +G+R             S V K    L +  A     +V 
Sbjct: 179 AIDTILN-QKGRNVLCIYCAIGQRA------------SAVAKVVANLREHGAMDYTIVVV 225

Query: 299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNI 337
            + N+PPG +        ++ EHF +  G+DVL+  D++
Sbjct: 226 TEGNDPPGLQYIAPYAATSIGEHFMEQ-GRDVLIVYDDL 263

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase. Length = 497

>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain

 Score = 82.7 bits (205), Expect = 4e-18
 Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD 218
             VPVG   LGR+++ +G PID KG ++T+   PI  +AP  + + +  + L TGIK +D
Sbjct: 2   ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAID 61

Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278
            + P  RG +  + G    GKT + ++ I N  K    + ++  +G++           +
Sbjct: 62  AMIPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGKKVYCIYVAIGQK--------ASTV 112

Query: 279 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNI 337
              V  L +  A     +V    ++P   +     TG  + E+F D  G+  L+  D++
Sbjct: 113 AQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMD-NGKHALIIYDDL 170

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic. Length = 274

>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 14/193 (7%)

Query: 149 GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQ 208
           G  VL    P ++ +    LGR+++  G P+D K  L   H  P+    P+ + +   Q+
Sbjct: 80  GAEVLPLRRPPSLHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQE 139

Query: 209 ILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGFSVFAGVGERT 267
           I  TGIK +D      +G +IG+F   G GK+     L++ +AK +    +V A +GER 
Sbjct: 140 IFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKS----SLLSTIAKGSKSTINVIALIGERG 195

Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
           RE  + Y E  + G+       A  +  ++    +E    +   G   +T+AE+FRD +G
Sbjct: 196 REVRE-YIEQHKEGL-------AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRD-QG 246

Query: 328 QDVLLFIDNIFRF 340
             VL  +D++ R+
Sbjct: 247 HRVLFIMDSLSRW 259

Length = 434

>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated

 Score = 78.4 bits (193), Expect = 4e-16
 Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 12/196 (6%)

Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQA 204
           G++ G RV  +     + +G   LGR++N +GEP+D KG L     L         +++ 
Sbjct: 74  GVLGGARVFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRR 133

Query: 205 TEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264
                L  G+  ++ L    +G ++GL  G+GVGK+VL + +I    +A     V   +G
Sbjct: 134 AVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVL-LGMITRYTQAD--VVVVGLIG 190

Query: 265 ERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324
           ER RE     +E IE  +   G     +K  +V    +E P  R +       +A ++RD
Sbjct: 191 ERGRE----VKEFIEHSLQAAG----MAKSVVVAAPADESPLMRIKATELCHAIATYYRD 242

Query: 325 AEGQDVLLFIDNIFRF 340
            +G DVLL +D++ R+
Sbjct: 243 -KGHDVLLLVDSLTRY 257

Length = 434

>gnl|CDD|217261 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel domain

 Score = 70.2 bits (173), Expect = 2e-15
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 90  VCQVIGAVVDVRFDEG-LPPILTALEV-VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           + QVIG VVDV F  G LP +  ALEV +      +L    ++G   VR + M GT+GL 
Sbjct: 1   IVQVIGPVVDVEFGIGRLPGLYNALEVELVEFGNGLLGEVLNLGGDKVRVVVMGGTDGLS 60

Query: 148 RGQRVLNTG 156
           RG  V  TG
Sbjct: 61  RGDEVKRTG 69

This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. Length = 69

>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated

 Score = 76.3 bits (189), Expect = 2e-15
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 133 GVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLP 192
           G V    +   E +  G  V  TG  + VPVG   LGR++N +G+PID KG ++     P
Sbjct: 72  GAV---ILGDYEDIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRP 128

Query: 193 IHREAPAFVEQATEQQILVTGIKVVDLLAPYQRG 226
           + R+AP  +++ +  + L TGIK +D + P  RG
Sbjct: 129 VERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRG 162

Length = 502

>gnl|CDD|204648 pfam11421, Synthase_beta, ATP synthase F1 beta subunit

 Score = 65.7 bits (160), Expect = 4e-14
 Identities = 34/48 (70%), Positives = 37/48 (77%), Gaps = 1/48 (2%)

Query: 1  MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPA-ATRRASPYGHLLSR 47
          MASRRLLSSLLRSS RRS SKSSL NSS   P+    RASP G+LL+R
Sbjct: 1  MASRRLLSSLLRSSSRRSASKSSLGNSSPRLPSPRAPRASPCGYLLNR 48

The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site. Length = 48

>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 67/256 (26%), Positives = 104/256 (40%), Gaps = 21/256 (8%)

Query: 90  VCQVIGAVVDVRFDEGLP-PILTALEVVDHSVRL--VLEVAQHMGEGVVRTIAMDGTEGL 146
           + ++ G ++ V   EG     L  +E  D  VR   VLEV              +GT GL
Sbjct: 10  ISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEV----RGDKAVVQVFEGTSGL 65

Query: 147 -VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
             +G  V  TG  + +PV    LGRI N  G+PID   ++  E  L I+        +  
Sbjct: 66  DTKGTTVRFTGETLKIPVSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIY 125

Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS----VFA 261
            ++ + TGI  +D +    RG K+ +F G+G+    L  + I   A   G       VFA
Sbjct: 126 PEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ-IARQATVDGEEEEFAVVFA 184

Query: 262 GVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321
            +G    E      E  E+G +         +  L     ++P   R       LTVAE+
Sbjct: 185 AMGITHEEALFFMDEFEETGAL--------DRAVLFLNLADDPAVERIITPRMALTVAEY 236

Query: 322 FRDAEGQDVLLFIDNI 337
               +   VL+ + ++
Sbjct: 237 LAFEKDMHVLVILTDM 252

Length = 463

>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 27/259 (10%)

Query: 90  VCQVIGAVVDVRFDEGLPPI----LTALEVVDHSVR--LVLEVAQHMGEGVVRTIAMDGT 143
           + ++ G +V V   EG+ P+    +  +E  D   R   VL+      EG+      +GT
Sbjct: 5   ITEIAGPLVFV---EGVEPVAYNEIVEIETPDGEKRRGQVLDS----SEGIAVVQVFEGT 57

Query: 144 EGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVE 202
            GL   G +V  TG  + +PV    LGRI+N  GEPID   ++  +    I+        
Sbjct: 58  TGLDPTGTKVRFTGETLKLPVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYA 117

Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS---- 258
           +   ++ + TGI  +D +    RG K+ +F G+G+    L  + I   A   G  S    
Sbjct: 118 REYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAAQ-IARQATVRGEESEFAV 176

Query: 259 VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318
           VFA +G    E N   ++  E+G ++        +  +     ++P   R       LT 
Sbjct: 177 VFAAMGITYEEANFFMKDFEETGALE--------RAVVFLNLADDPAVERIVTPRMALTA 228

Query: 319 AEHFRDAEGQDVLLFIDNI 337
           AE+    +   VL+ + ++
Sbjct: 229 AEYLAFEKDMHVLVILTDM 247

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases [Energy metabolism, ATP-proton motive force interconversion]. Length = 458

>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional

 Score = 66.0 bits (162), Expect = 5e-12
 Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 25/242 (10%)

Query: 97  VVDVRFDEGLPPILTALEVVDHSVRL--VLEVAQHMGEGVVRTIAMDGTEGL-VRGQRVL 153
           V  V + E     +  +E+ +   R   VLEV     E        +GT GL ++  +V 
Sbjct: 20  VEGVAYGE-----IVEIELPNGEKRRGQVLEV----SEDKAVVQVFEGTTGLDLKDTKVR 70

Query: 154 NTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 213
            TG P+ +PV    LGRI + +G PID   ++  E  L I+      V +   ++ + TG
Sbjct: 71  FTGEPLKLPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTG 130

Query: 214 IKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS----VFAGVGERTRE 269
           I  +D L    RG K+ +F G+G+    L  ++    AK  G       VFA +G    E
Sbjct: 131 ISAIDGLNTLVRGQKLPIFSGSGLPHNELAAQIARQ-AKVLGEEENFAVVFAAMGITFEE 189

Query: 270 GNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQD 329
            N    +  E+G +         +  +     ++P   R       LT AE+    +G  
Sbjct: 190 ANFFMEDFEETGAL--------ERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGMH 241

Query: 330 VL 331
           VL
Sbjct: 242 VL 243

Length = 460

>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 184 DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243
           ++K     P+    P + E+   +  L+TG +++D   P  +GG   + G  G GKTV  
Sbjct: 181 EIKMYQKWPVRIPRP-YKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVTQ 239

Query: 244 MELINNVAK-AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302
            +L    AK +     V+ G GER  E  D+  E  E    K G    +    L+    N
Sbjct: 240 HQL----AKWSDADIVVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTV-LIANTSN 294

Query: 303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR 339
            P  AR     TG+T+AE+FRD  G DV L  D+  R
Sbjct: 295 MPVAAREASIYTGITIAEYFRD-MGYDVALMADSTSR 330

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases [Energy metabolism, ATP-proton motive force interconversion]. Length = 578

>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]

 Score = 63.4 bits (155), Expect = 5e-11
 Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 174 VIGEPIDEKGDLKTE--HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL 231
           VI     E G++  +     P+ +  P    +   +  LVTG +V+D L P  +GG   +
Sbjct: 171 VIATVSTEGGEVDVQMMTTWPVRKARP-VKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAV 229

Query: 232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291
            G  G GKTV    L      A G   ++ G GER  E  ++ +E  E      G    D
Sbjct: 230 PGPFGSGKTVSQHTLSKL---ADGDIVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMD 286

Query: 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
               L+    N P  AR     TG+T+AE++RD  G DV L  D+  R+ +
Sbjct: 287 RTV-LIANTSNMPVAAREASIYTGITIAEYYRD-MGYDVALMADSTSRWAE 335

Length = 588

>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic) subunit B

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 11/186 (5%)

Query: 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVV 217
            + VPV    LGRI N  G+PID   ++  E YL I+      V +   ++++ TGI  +
Sbjct: 1   TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAI 60

Query: 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN--VAKAHGGFS-VFAGVGERTREGNDLY 274
           D +    RG KI +F G+G+    L  ++     V      F+ VFA +G    +     
Sbjct: 61  DGMNTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFK 120

Query: 275 REMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFI 334
            +  E+G +         +  L     N+P   R       LT AE+    +G+ VL+ +
Sbjct: 121 DDFEETGAL--------ERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVIL 172

Query: 335 DNIFRF 340
            ++  +
Sbjct: 173 TDMTNY 178

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit. Length = 276

>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases

 Score = 59.4 bits (144), Expect = 8e-11
 Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGD 287
            I +FG  G GKT L ++L  N+A   GG  V+  + E   E  +               
Sbjct: 1   LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIG--------ESL 51

Query: 288 KQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340
           K A     +V+   ++P  AR       L          G D L+ +D + R 
Sbjct: 52  KGALDNLIIVFATADDPAAAR-------LLSKAERLRERGGDDLIILDELTRL 97

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Length = 165

>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 56/234 (23%), Positives = 105/234 (44%), Gaps = 27/234 (11%)

Query: 132 EGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPID------EKGDL 185
           +G +  I MD    +  GQ+V+ TG  + +PVG   LG+++N +G  +        +  L
Sbjct: 88  DGRIGIILMDNITEVQSGQKVMATGKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALL 147

Query: 186 KTEHYL-PIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244
           ++E  L  +   AP  V ++     L+TG K VD + P  RG +  + G    GKT + +
Sbjct: 148 ESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVGDRQTGKTSIAV 207

Query: 245 ELINN-------VAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297
             I N       +   +   S++  +G+R      ++R +   G ++     A +     
Sbjct: 208 STIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAA--- 264

Query: 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
                EP G +     +G+T+ E+F +  G+  L   D++ +    + Q+S +L
Sbjct: 265 -----EPAGLQYLAPYSGVTMGEYFMN-RGRHCLCVYDDLSKQAVAYRQISLLL 312

Length = 574

>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 179 IDEKGD---LKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235
           ++  G    +      P+ +  P   E+    + L+TG +V+D L P  +GG   + G  
Sbjct: 108 VEFDGKKEEITMVQKWPVRQPRP-VKEKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPF 166

Query: 236 GVGKTVLIMELINNVAK-AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKC 294
           G GKTV+   L    +K ++    ++ G GER  E  ++  E  E      G+       
Sbjct: 167 GCGKTVIQQSL----SKYSNSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTV 222

Query: 295 ALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
            L+    N P  AR     TG+T+AE+FRD  G +V L  D+  R+ +
Sbjct: 223 -LIANTSNMPVAAREASIYTGITIAEYFRD-MGYNVALMADSTSRWAE 268

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. Length = 369

>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 18/167 (10%)

Query: 100 VRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159
           V F++G   I  AL +  ++V +VL     MG+G    I     EG      V  TG   
Sbjct: 32  VEFEDGTIGI--ALNLESNNVGVVL-----MGDG--LMI----QEG----SSVKATGKIA 74

Query: 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDL 219
            +PV    LGR++N + +PID KG++       I   AP  + + +  + L TG+  +D 
Sbjct: 75  QIPVSEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDS 134

Query: 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
           + P  RG +  + G    GKT +  + I N  K      V+  +G++
Sbjct: 135 MIPIGRGQRELIIGDRQTGKTAVATDTILN-QKGQNVICVYVAIGQK 180

Length = 485

>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 35/216 (16%)

Query: 140 MDGTEGLVRGQRVL-------NTGSPITVPVGRVTLGRIMNVIGEPID--------EKGD 184
           ++  EG++ G RV           S   +P+G   LGR+++  G+P+D        E G 
Sbjct: 82  LEEVEGILPGARVYARNISGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGA 141

Query: 185 LKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244
           L T  + P+ R           + +L TG++ ++ L    RG ++GLF G+GVGK+VL +
Sbjct: 142 LITPPFNPLQRTPI--------EHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVL-L 192

Query: 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304
            ++    +A     V   +GER RE  D     IE+    LG  +  ++  ++    +  
Sbjct: 193 GMMARYTQAD--VIVVGLIGERGREVKDF----IEN---ILGA-EGRARSVVIAAPADVS 242

Query: 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340
           P  R +       +AE FRD  GQ VLL +D++ R+
Sbjct: 243 PLLRMQGAAYATRIAEDFRD-RGQHVLLIMDSLTRY 277

Length = 455

>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 15/154 (9%)

Query: 195 REAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH 254
           R      E+      L+TG +V+D L P  +GG   + G  G GKTV        ++++ 
Sbjct: 195 RSPRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTV--------ISQSL 246

Query: 255 GGFS-----VFAGVGERTREGNDLYREMIESGVIKLGDKQADSK-CALVYGQMNEPPGAR 308
             +S     V+ G GER  E  ++  +  E  +   G +++  K   LV    N P  AR
Sbjct: 247 SKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAR 306

Query: 309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
                TG+T+AE+FRD  G +V +  D+  R+ +
Sbjct: 307 EASIYTGITLAEYFRD-MGYNVSMMADSTSRWAE 339

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591

>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 113 LEVVDHSVRL--VLEVAQHMGEGVVRTIAMDGTEGL-VRGQRVLNTGSPITVPVGRVTLG 169
           L + D +VR   VLEV+ +  + VV+    +GT G+  +      TG  +  PV    LG
Sbjct: 29  LTLPDGTVRSGQVLEVSGN--KAVVQV--FEGTSGIDAKKTTCEFTGDILRTPVSEDMLG 84

Query: 170 RIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKI 229
           R+ N  G+PID+   +  E YL I+ +      +   ++++ TGI  +D++    RG KI
Sbjct: 85  RVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKI 144

Query: 230 GLFGGAGV 237
            +F  AG+
Sbjct: 145 PIFSAAGL 152

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 466

>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 16/192 (8%)

Query: 142 GTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF- 200
           GT G+  G  V+  G P+ V      LGR  N  G+PID   +L+ E   PI    P+  
Sbjct: 57  GTRGISTGDEVVFLGRPMQVTYSESLLGRRFNGSGKPIDGGPELEGE---PIEIGGPSVN 113

Query: 201 -VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSV 259
            V++   ++++ TGI ++D+        KI +F  +G     L+  +     +A     +
Sbjct: 114 PVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLARI---ALQAEADIII 170

Query: 260 FAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319
             G+G       D Y    ++      +  A  +  +     ++PP     V    L VA
Sbjct: 171 LGGMGLT----FDDYLFFKDT----FENAGALDRTVMFIHTASDPPVECLLVPDMALAVA 222

Query: 320 EHFRDAEGQDVL 331
           E F     + VL
Sbjct: 223 EKFALEGKKKVL 234

Length = 436

>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional

 Score = 42.8 bits (102), Expect = 2e-04
 Identities = 59/183 (32%), Positives = 81/183 (44%), Gaps = 45/183 (24%)

Query: 174 VIGEPIDEKG---DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIG 230
            I    DE G   +L      P+ R  P + E+    + L+TG +V+D   P  +GG   
Sbjct: 173 TIAVLEDEDGEGVELTMMQKWPVRRPRP-YKEKLPPVEPLITGQRVIDTFFPVAKGGTAA 231

Query: 231 LFGGAGVGKTVLIMELINNVAK-AHGGFSVFAGVGERTREGNDLYREMIESGVI----KL 285
           + G  G GKTV   +L    AK A     ++ G GER   GN    EM E  V+    +L
Sbjct: 232 IPGPFGSGKTVTQHQL----AKWADADIVIYVGCGER---GN----EMTE--VLEEFPEL 278

Query: 286 GDKQADSKCALVYGQ--M----------NEPPGAR-ARVGLTGLTVAEHFRDAEGQDVLL 332
            D +         G+  M          N P  AR A +  TG+T+AE++RD  G DVLL
Sbjct: 279 IDPKT--------GRPLMERTVLIANTSNMPVAAREASI-YTGITIAEYYRD-MGYDVLL 328

Query: 333 FID 335
             D
Sbjct: 329 MAD 331

Length = 586

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 17/67 (25%), Positives = 20/67 (29%), Gaps = 2/67 (2%)

Query: 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK 284
            G  I + G  G GKT L   L   +    GG       GE   E       +I  G  K
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYID--GEDILEEVLDQLLLIIVGGKK 58

Query: 285 LGDKQAD 291
                  
Sbjct: 59  ASGSGEL 65

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224

Query: 224 QRGGKIGLFGGAGVGKTV----LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
            +GG   + G  G GK V    LI+     + K    + +  G G++T EGN+ + E+ E
Sbjct: 225 AKGGTAAIPGPFGSGKCVDGDTLILTKEFGLIKIKDLYEILDGKGKKTVEGNEEWTELEE 284

Length = 1017

>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 259 VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318
           ++ G GER  E  D+  E  +    K G K    +  L+    N P  AR     TG+T+
Sbjct: 686 IYIGCGERGNEMTDVLEEFPKLKDPKTG-KPLMERTVLIANTSNMPVAAREASIYTGITI 744

Query: 319 AEHFRDAEGQDVLLFIDNIFRFTQ 342
           AE+FRD  G DV L  D+  R+ +
Sbjct: 745 AEYFRDM-GYDVALMADSTSRWAE 767

Length = 1017

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
COG0055	468	AtpD F0F1-type ATP synthase, beta subunit [Energy	100.0
KOG1350	521	consensus F0F1-type ATP synthase, beta subunit [En	100.0
TIGR03305	449	alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit	100.0
CHL00060	494	atpB ATP synthase CF1 beta subunit	100.0
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	100.0
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	100.0
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	100.0
PTZ00185	574	ATPase alpha subunit; Provisional	100.0
TIGR03324	497	alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a	100.0
PRK02118	436	V-type ATP synthase subunit B; Provisional	100.0
PRK04196	460	V-type ATP synthase subunit B; Provisional	100.0
CHL00059	485	atpA ATP synthase CF1 alpha subunit	100.0
COG1157	441	FliI Flagellar biosynthesis/type III secretory pat	100.0
TIGR01041	458	ATP_syn_B_arch ATP synthase archaeal, B subunit. A	100.0
PRK13343	502	F0F1 ATP synthase subunit alpha; Provisional	100.0
PRK09281	502	F0F1 ATP synthase subunit alpha; Validated	100.0
TIGR00962	501	atpA proton translocating ATP synthase, F1 alpha s	100.0
TIGR01043	578	ATP_syn_A_arch ATP synthase archaeal, A subunit. A	100.0
PRK04192	586	V-type ATP synthase subunit A; Provisional	100.0
TIGR01040	466	V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th	100.0
TIGR01042	591	V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. Th	100.0
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	100.0
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	100.0
PRK07165	507	F0F1 ATP synthase subunit alpha; Validated	100.0
PRK06936	439	type III secretion system ATPase; Provisional	100.0
COG0056	504	AtpA F0F1-type ATP synthase, alpha subunit [Energy	100.0
cd01135	276	V_A-ATPase_B V/A-type ATP synthase (non-catalytic)	100.0
PRK05922	434	type III secretion system ATPase; Validated	100.0
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	100.0
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	100.0
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	100.0
PRK09099	441	type III secretion system ATPase; Provisional	100.0
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	100.0
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	100.0
PRK06820	440	type III secretion system ATPase; Validated	100.0
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	100.0
cd01132	274	F1_ATPase_alpha F1 ATP synthase alpha, central dom	100.0
PRK07594	433	type III secretion system ATPase SsaN; Validated	100.0
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	100.0
PRK08149	428	ATP synthase SpaL; Validated	100.0
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	100.0
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	100.0
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	100.0
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	100.0
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	100.0
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	100.0
PRK06315	442	type III secretion system ATPase; Provisional	100.0
cd01134	369	V_A-ATPase_A V/A-type ATP synthase catalytic subun	100.0
COG1155	588	NtpA Archaeal/vacuolar-type H+-ATPase subunit A [E	100.0
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	100.0
PRK14698	1017	V-type ATP synthase subunit A; Provisional	100.0
KOG1352	618	consensus Vacuolar H+-ATPase V1 sector, subunit A	100.0
COG1156	463	NtpB Archaeal/vacuolar-type H+-ATPase subunit B [E	100.0
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	100.0
PRK12608	380	transcription termination factor Rho; Provisional	100.0
KOG1351	489	consensus Vacuolar H+-ATPase V1 sector, subunit B	100.0
PRK12678	672	transcription termination factor Rho; Provisional	100.0
PRK09376	416	rho transcription termination factor Rho; Provisio	100.0
KOG1353	340	consensus F0F1-type ATP synthase, alpha subunit [E	99.97
TIGR00767	415	rho transcription termination factor Rho. Members	99.95
cd01128	249	rho_factor Transcription termination factor rho is	99.94
COG1158	422	Rho Transcription termination factor [Transcriptio	99.94
PF11421	49	Synthase_beta: ATP synthase F1 beta subunit; Inter	98.94
PF02874	69	ATP-synt_ab_N: ATP synthase alpha/beta family, bet	98.67
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.37
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	98.22
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.19
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	98.08
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.97
smart00382	148	AAA ATPases associated with a variety of cellular	97.95
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.94
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.91
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.88
PRK06067	234	flagellar accessory protein FlaH; Validated	97.88
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.81
PRK09354	349	recA recombinase A; Provisional	97.8
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.73
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.71
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	97.69
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.69
PRK09302	509	circadian clock protein KaiC; Reviewed	97.67
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.67
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.58
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	97.53
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.53
PRK04328	249	hypothetical protein; Provisional	97.49
PTZ00035	337	Rad51 protein; Provisional	97.49
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.43
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.38
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.35
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.33
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	97.29
PRK05973	237	replicative DNA helicase; Provisional	97.27
PRK09519	790	recA DNA recombination protein RecA; Reviewed	97.27
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.24
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.21
PRK09302	509	circadian clock protein KaiC; Reviewed	97.17
PF05729	166	NACHT: NACHT domain	97.12
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.06
PF00154	322	RecA: recA bacterial DNA recombination protein; In	97.03
PRK11823	446	DNA repair protein RadA; Provisional	96.98
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.96
PF13173	128	AAA_14: AAA domain	96.92
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	96.84
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.8
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.73
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.72
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.47
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.42
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.26
PRK00411	394	cdc6 cell division control protein 6; Reviewed	96.22
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	96.13
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	96.13
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	96.12
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	96.04
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.02
TIGR00665	434	DnaB replicative DNA helicase. This model describe	95.99
PRK09183	259	transposase/IS protein; Provisional	95.85
PRK08181	269	transposase; Validated	95.85
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	95.84
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.84
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	95.81
cd03115	173	SRP The signal recognition particle (SRP) mediates	95.8
PRK12377	248	putative replication protein; Provisional	95.75
PRK13342	413	recombination factor protein RarA; Reviewed	95.7
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.68
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.67
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	95.63
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.62
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.62
COG2256	436	MGS1 ATPase related to the helicase subunit of the	95.57
PRK10416	318	signal recognition particle-docking protein FtsY;	95.51
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.48
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	95.47
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	95.47
PF00004	132	AAA: ATPase family associated with various cellula	95.46
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	95.45
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.43
cd03269	210	ABC_putative_ATPase This subfamily is involved in	95.42
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.4
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	95.4
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.38
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.37
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	95.37
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.35
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.34
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	95.33
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.33
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.32
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.3
PRK05748	448	replicative DNA helicase; Provisional	95.3
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	95.3
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.26
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	95.26
PRK08116	268	hypothetical protein; Validated	95.25
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.25
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.24
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.23
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.22
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	95.22
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	95.18
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	95.18
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	95.16
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.16
PRK06526	254	transposase; Provisional	95.15
COG4619	223	ABC-type uncharacterized transport system, ATPase	95.15
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	95.14
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.14
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	95.13
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	95.13
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	95.12
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.12
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	95.11
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	95.1
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	95.1
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	95.09
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	95.09
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	95.09
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.07
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	95.07
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.06
PRK08118	167	topology modulation protein; Reviewed	95.06
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.05
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	95.05
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	95.03
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	95.03
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	95.02
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	95.01
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	95.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	95.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.99
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	94.97
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	94.97
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	94.96
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	94.94
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	94.94
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	94.93
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	94.93
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	94.91
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	94.91
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	94.91
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	94.9
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	94.9
PRK07261	171	topology modulation protein; Provisional	94.88
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	94.88
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	94.87
PRK14974	336	cell division protein FtsY; Provisional	94.86
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	94.85
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	94.84
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	94.84
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	94.84
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	94.83
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	94.83
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.82
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	94.81
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	94.81
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	94.8
cd03215	182	ABC_Carb_Monos_II This family represents domain II	94.79
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	94.78
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	94.78
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	94.76
cd03246	173	ABCC_Protease_Secretion This family represents the	94.76
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	94.76
TIGR00064	272	ftsY signal recognition particle-docking protein F	94.75
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	94.75
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	94.73
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	94.73
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	94.73
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	94.73
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	94.73
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	94.73
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	94.72
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	94.72
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	94.71
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	94.71
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	94.68
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	94.67
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	94.65
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	94.65
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	94.65
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	94.64
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	94.64
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	94.64
PRK10908	222	cell division protein FtsE; Provisional	94.64
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	94.63
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	94.62
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	94.62
PRK09165	497	replicative DNA helicase; Provisional	94.62
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	94.6
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	94.6
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	94.59
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	94.58
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	94.58
KOG2028	554	consensus ATPase related to the helicase subunit o	94.57
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	94.57
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	94.56
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	94.56
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	94.54
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	94.54
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	94.54
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	94.54
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	94.53
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	94.53
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	94.52
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	94.52
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	94.52
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	94.52
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	94.5
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	94.49
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	94.49
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	94.48
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	94.47
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	94.47
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	94.47
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	94.46
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	94.46
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	94.45
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	94.44
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	94.44
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	94.44
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	94.44
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	94.43
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	94.42
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	94.42
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	94.41
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	94.4
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	94.4
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	94.4
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	94.4
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	94.38
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	94.37
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	94.37
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	94.36
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	94.36
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.35
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	94.34
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	94.34
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	94.33
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	94.33
PRK08760	476	replicative DNA helicase; Provisional	94.33
cd03234	226	ABCG_White The White subfamily represents ABC tran	94.31
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	94.31
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	94.31
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	94.3
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	94.29
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	94.26
PRK09984	262	phosphonate/organophosphate ester transporter subu	94.24
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	94.24
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	94.24
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	94.24
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	94.24
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	94.23
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	94.22
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	94.22
PRK13546	264	teichoic acids export protein ATP-binding subunit;	94.22
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	94.22
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	94.21
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	94.21
PHA02542	473	41 41 helicase; Provisional	94.21
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	94.2
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	94.19
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	94.19
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	94.19
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	94.19
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	94.18
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	94.17
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	94.17
PRK05595	444	replicative DNA helicase; Provisional	94.17
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	94.17
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	94.17
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	94.15
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	94.15
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	94.15
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	94.14
COG1127	263	Ttg2A ABC-type transport system involved in resist	94.13
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	94.13
COG4988	559	CydD ABC-type transport system involved in cytochr	94.13
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	94.12
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	94.12
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	94.11
PRK14087	450	dnaA chromosomal replication initiation protein; P	94.11
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	94.09
PRK08506	472	replicative DNA helicase; Provisional	94.08
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	94.08
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	94.07
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	94.06
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	94.05
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	94.05
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	94.05
PF13245	76	AAA_19: Part of AAA domain	94.04
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.04
PRK07004	460	replicative DNA helicase; Provisional	94.03
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	94.03
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	94.03
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.03
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	94.02
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	94.01
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	94.01
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	94.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	94.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	93.98
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	93.97
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	93.96
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	93.95
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	93.94
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	93.92
COG4172	534	ABC-type uncharacterized transport system, duplica	93.92
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	93.92
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	93.91
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	93.91
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	93.91
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	93.89
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	93.88
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	93.88
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	93.88
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	93.86
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	93.85
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	93.85
cd03299	235	ABC_ModC_like Archeal protein closely related to M	93.84
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	93.8
PRK07773	886	replicative DNA helicase; Validated	93.79
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	93.79
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	93.79
PRK05636	505	replicative DNA helicase; Provisional	93.77
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	93.76
COG3638	258	ABC-type phosphate/phosphonate transport system, A	93.76
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	93.74
PRK10867	433	signal recognition particle protein; Provisional	93.73
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	93.69
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	93.68
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	93.65
PRK00149	450	dnaA chromosomal replication initiation protein; R	93.65
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	93.65
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	93.64
PRK13536	340	nodulation factor exporter subunit NodI; Provision	93.61
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	93.61
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	93.6
PRK13537	306	nodulation ABC transporter NodI; Provisional	93.6
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	93.57
COG4987	573	CydC ABC-type transport system involved in cytochr	93.56
PRK08727	233	hypothetical protein; Validated	93.56
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	93.55
PRK03695	248	vitamin B12-transporter ATPase; Provisional	93.55
PRK00300	205	gmk guanylate kinase; Provisional	93.55
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	93.54
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	93.53
TIGR00959	428	ffh signal recognition particle protein. This mode	93.49
PRK08084	235	DNA replication initiation factor; Provisional	93.47
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	93.47
PRK08233	182	hypothetical protein; Provisional	93.46
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.45
TIGR00235	207	udk uridine kinase. Model contains a number of lon	93.45
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	93.44
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	93.44
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	93.44
PRK06893	229	DNA replication initiation factor; Validated	93.43
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	93.42
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	93.41
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	93.4
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	93.39
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	93.38
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	93.37
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	93.32
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	93.32
PRK08840	464	replicative DNA helicase; Provisional	93.28
PLN03073	718	ABC transporter F family; Provisional	93.27
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	93.24
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	93.24
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	93.22
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	93.22
PRK06217	183	hypothetical protein; Validated	93.15
PRK11147	635	ABC transporter ATPase component; Reviewed	93.13
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	93.1
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	93.1
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	93.09
PF12846	304	AAA_10: AAA-like domain	93.07
PRK15064	530	ABC transporter ATP-binding protein; Provisional	93.06
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	93.05
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	93.05
COG4181	228	Predicted ABC-type transport system involved in ly	93.03
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	93.01
PRK15064	530	ABC transporter ATP-binding protein; Provisional	92.96
PRK14530	215	adenylate kinase; Provisional	92.95
PRK14531	183	adenylate kinase; Provisional	92.93
PRK06904	472	replicative DNA helicase; Validated	92.93
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	92.92
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	92.91
PTZ00301	210	uridine kinase; Provisional	92.89
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	92.88
PRK10938	490	putative molybdenum transport ATP-binding protein	92.88
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	92.87
PRK05480	209	uridine/cytidine kinase; Provisional	92.83
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	92.83
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	92.81
PRK09435	332	membrane ATPase/protein kinase; Provisional	92.81
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	92.8
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	92.78
PRK06321	472	replicative DNA helicase; Provisional	92.78
COG0488	530	Uup ATPase components of ABC transporters with dup	92.77
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	92.77
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	92.77
CHL00195	489	ycf46 Ycf46; Provisional	92.76
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	92.75
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.71
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	92.7
PRK10261	623	glutathione transporter ATP-binding protein; Provi	92.69
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	92.68
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	92.66
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	92.65
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	92.63
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	92.62
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	92.57
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	92.57
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	92.55
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	92.54
PRK11147	635	ABC transporter ATPase component; Reviewed	92.49
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	92.48
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	92.47
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	92.46
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	92.42
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	92.4
PHA00729	226	NTP-binding motif containing protein	92.36
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	92.35
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	92.35
PRK10522	547	multidrug transporter membrane component/ATP-bindi	92.33
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	92.31
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	92.3
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	92.29
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	92.26
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	92.26
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	92.26
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	92.24
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	92.21
PRK08006	471	replicative DNA helicase; Provisional	92.21
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	92.2
TIGR00101	199	ureG urease accessory protein UreG. This model rep	92.2
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	92.18
PRK00889	175	adenylylsulfate kinase; Provisional	92.18
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	92.13

>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]

Probab=100.00  E-value=1.6e-73  Score=555.11  Aligned_cols=254  Identities=72%  Similarity=1.111  Sum_probs=243.8

Q ss_pred             ceeeEEEEECCEEEEEeCC--CChhhhhceEEeecCc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957           86 AIGQVCQVIGAVVDVRFDE--GLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP  162 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~--glp~i~~~lev~~~~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp  162 (348)
                      +.|+|+||+|+||||+|+.  .+|.+++++++..... .+++||++|+|++.||+++|+.|+||.+|+.|.+||+|++||
T Consensus         2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP   81 (468)
T COG0055           2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP   81 (468)
T ss_pred             CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence            4699999999999999983  4999999999876532 589999999999999999999999999999999999999999


Q ss_pred             CCccccccEEeeeCcccccCCCCccc--ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957          163 VGRVTLGRIMNVIGEPIDEKGDLKTE--HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (348)
Q Consensus       163 VG~~lLGRViD~lG~PiD~~g~i~~~--~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT  240 (348)
                      ||+++||||+|++|+|||+.+++...  .+||||+++|...++.+..|+|+||||+||+|+|+.||+|+|||||+|||||
T Consensus        82 VG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKT  161 (468)
T COG0055          82 VGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT  161 (468)
T ss_pred             cchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccce
Confidence            99999999999999999999999765  8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957          241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE  320 (348)
Q Consensus       241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE  320 (348)
                      +|++++|+|+++.|++++||+++|||.||.+|+|+||++++++        ++|++|++||||||++|+|++++|+|+||
T Consensus       162 Vl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl--------~ktalv~gQMNEpPGaR~RValtGlT~AE  233 (468)
T COG0055         162 VLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVL--------DKTALVFGQMNEPPGARMRVALTGLTMAE  233 (468)
T ss_pred             eeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCC--------CceeEEEeecCCCCcceeeehhhhhhHHH
Confidence            9999999999999999999999999999999999999999976        59999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          321 HFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       321 yfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||||++|+|||||+|||+||.||++|+
T Consensus       234 yfRD~~gqdVLlFIDNIfRftQAGsEV  260 (468)
T COG0055         234 YFRDEEGQDVLLFIDNIFRFTQAGSEV  260 (468)
T ss_pred             HhhcccCCeEEEEehhhhHHhhcchHH
Confidence            999988999999999999999999996

>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]

Probab=100.00  E-value=2.2e-73  Score=545.32  Aligned_cols=264  Identities=78%  Similarity=1.189  Sum_probs=255.9

Q ss_pred             ccCCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCcee
Q 018957           82 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV  161 (348)
Q Consensus        82 ~~~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~V  161 (348)
                      +...+.|+|.+|+|+|||++|++++|+|++++++.+.+.++++||+||+|+|.||+++|++|+||.+|+.|.+||.|++|
T Consensus        47 ~a~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~i  126 (521)
T KOG1350|consen   47 AAKKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISI  126 (521)
T ss_pred             hhcccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceee
Confidence            45666899999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             cCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957          162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV  241 (348)
Q Consensus       162 pVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~  241 (348)
                      |||++.||||+|++|+|+|+.|+++...+.|||..+|.+.+.....|+|+||||++|+|.|+.||+|||+||++|+|||+
T Consensus       127 pVG~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTV  206 (521)
T KOG1350|consen  127 PVGPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV  206 (521)
T ss_pred             ecCHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCcccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957          242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH  321 (348)
Q Consensus       242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy  321 (348)
                      |++++|+|+||+|++++||+++|||.||.+|+|+||+|+|++.+.++  -+|..+|+++||+||++|.|+++||+|+|||
T Consensus       207 lImELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~--~SKvaLV~GQMNePPGARaRV~LTgLTvAEY  284 (521)
T KOG1350|consen  207 LIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLEGE--TSKVALVYGQMNEPPGARARVALTGLTVAEY  284 (521)
T ss_pred             eHHHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCeeeccCC--cceEEEEeeccCCCCCceeeeeeecccHHHH
Confidence            99999999999999999999999999999999999999999987653  3799999999999999999999999999999


Q ss_pred             hhhcCCCcEEEEEechhHHHhhhccc
Q 018957          322 FRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       322 frd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||.+|+|||||+|||+||.||++|+
T Consensus       285 FRD~egQDVLLFIDNIFRFtQAGSEV  310 (521)
T KOG1350|consen  285 FRDQEGQDVLLFIDNIFRFTQAGSEV  310 (521)
T ss_pred             hhccccceEEEeehhhhhhhccchHH
Confidence            99999999999999999999999986

>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta

Probab=100.00  E-value=2.8e-71  Score=558.48  Aligned_cols=251  Identities=49%  Similarity=0.839  Sum_probs=239.2

Q ss_pred             eeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCccc
Q 018957           88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVT  167 (348)
Q Consensus        88 G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~l  167 (348)
                      |+|++|+|+||||+|++++|++++.+++.+ .+.+.+||+++++++.+++++|++++||+.|+.|..||++++||||++|
T Consensus         1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~-~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~l   79 (449)
T TIGR03305         1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGR-EGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPT   79 (449)
T ss_pred             CeEEEEEcCEEEEEeCCCCcchhheEEecC-CCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhh
Confidence            799999999999999878999998888754 4578899999999999999999999999999999999999999999999


Q ss_pred             cccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          168 LGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       168 LGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      ||||+|++|+|||+++++...+++|++++||+|++|.+++++|+||||+||+|+||+||||++|||++|+|||+|+++++
T Consensus        80 LGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~  159 (449)
T TIGR03305        80 LSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMI  159 (449)
T ss_pred             cCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHH
Confidence            99999999999999988777778999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 018957          248 NNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG  327 (348)
Q Consensus       248 ~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G  327 (348)
                      +|++++|.+++||++||||+||++||+++|.+.++        ++||++|++|+|+||.+|++++|+|+|+||||||++|
T Consensus       160 ~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~--------l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G  231 (449)
T TIGR03305       160 HNMVGQHQGVSIFCGIGERCREGEELYREMKEAGV--------LDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEK  231 (449)
T ss_pred             HHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccc--------cceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99876678999999999999999999999988774        4799999999999999999999999999999999789


Q ss_pred             CcEEEEEechhHHHhhhccc
Q 018957          328 QDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       328 ~dVLli~DslTR~A~A~~e~  347 (348)
                      +||||++|||||||+|++||
T Consensus       232 ~~VLl~~DslTR~A~A~REi  251 (449)
T TIGR03305       232 QDVLLLIDNIFRFIQAGSEV  251 (449)
T ss_pred             CceEEEecChHHHHHHHHHH
Confidence            99999999999999999997

A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.

>CHL00060 atpB ATP synthase CF1 beta subunit

Probab=100.00  E-value=5.9e-68  Score=537.77  Aligned_cols=261  Identities=63%  Similarity=0.991  Sum_probs=239.0

Q ss_pred             CceeeEEEEECCEEEEEeCC-CChhhhhceEEeecC--c---eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCC
Q 018957           85 GAIGQVCQVIGAVVDVRFDE-GLPPILTALEVVDHS--V---RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSP  158 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~-glp~i~~~lev~~~~--~---~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~  158 (348)
                      ..+|+|++|.|.+++++|+. .+|++.+.+++...+  .   .+.+||+++.+++.+++++|++++||+.|++|..|+++
T Consensus        14 ~~~G~V~~v~G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~   93 (494)
T CHL00060         14 KNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAP   93 (494)
T ss_pred             ccceEEEEEEccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCCCc
Confidence            34699999999999999984 588887666663312  1   47889999999899999999999999999999999999


Q ss_pred             ceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCc
Q 018957          159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG  238 (348)
Q Consensus       159 l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvG  238 (348)
                      ++||||++|||||+|++|+|||+++++...+++||++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|
T Consensus        94 ~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~GvG  173 (494)
T CHL00060         94 LSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVG  173 (494)
T ss_pred             ceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCCCC
Confidence            99999999999999999999999988877778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957          239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV  318 (348)
Q Consensus       239 KT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ti  318 (348)
                      ||+|+.++++|++++|+|+|||++||||+||+.|||+++.+.++++.. ...++|+++|++|+|+||.+|++++|+|+|+
T Consensus       174 Ks~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~-~~~~~rsvvv~atsd~p~~~R~~a~~~A~ti  252 (494)
T CHL00060        174 KTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQ-NIAESKVALVYGQMNEPPGARMRVGLTALTM  252 (494)
T ss_pred             hhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccC-cccccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            999999999998877789999999999999999999999998876421 0136899999999999999999999999999


Q ss_pred             HHHhhhcCCC-cEEEEEechhHHHhhhccc
Q 018957          319 AEHFRDAEGQ-DVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       319 AEyfrd~~G~-dVLli~DslTR~A~A~~e~  347 (348)
                      |||||| +|+ ||||+||||||||+|++||
T Consensus       253 AEyfrd-~g~~~VLll~DslTR~A~A~REI  281 (494)
T CHL00060        253 AEYFRD-VNKQDVLLFIDNIFRFVQAGSEV  281 (494)
T ss_pred             HHHHHH-cCCCCEEEEcccchHHHHHHHHH
Confidence            999999 575 9999999999999999997

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=100.00  E-value=2.5e-67  Score=531.15  Aligned_cols=254  Identities=71%  Similarity=1.110  Sum_probs=235.3

Q ss_pred             ceeeEEEEECCEEEEEeCC-CChhhhhceEEe-ecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957           86 AIGQVCQVIGAVVDVRFDE-GLPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV  163 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~-glp~i~~~lev~-~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV  163 (348)
                      ++|+|++|.|+++++++.. .+|.+.+.+++. ..+..+.+||+++++++.+.+++|+++.||+.|+.|..||++++||+
T Consensus         2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~v   81 (463)
T PRK09280          2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPV   81 (463)
T ss_pred             CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEc
Confidence            4799999999999999764 356666445552 22446889999989999999999999999999999999999999999


Q ss_pred             CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957          164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI  243 (348)
Q Consensus       164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~  243 (348)
                      |++|||||+|++|+|||+.+++...++||+++++|+|++|..+++||.||||+||+|+|||||||+||||++|+|||+|+
T Consensus        82 g~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~Ll  161 (463)
T PRK09280         82 GKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI  161 (463)
T ss_pred             ChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHHH
Confidence            99999999999999999998887778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957          244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR  323 (348)
Q Consensus       244 ~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr  323 (348)
                      .++++|+++++.+++||++||||+||+.||++++.+.+.        ++||++|++|||+||.+|++++|+|+|+|||||
T Consensus       162 ~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~--------l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfr  233 (463)
T PRK09280        162 QELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGV--------LDKTALVFGQMNEPPGARLRVALTGLTMAEYFR  233 (463)
T ss_pred             HHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCC--------cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999977667899999999999999999999988764        579999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEechhHHHhhhccc
Q 018957          324 DAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       324 d~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |++|+||||+|||+||||+|+|||
T Consensus       234 d~~G~~VLll~DslTR~A~A~REi  257 (463)
T PRK09280        234 DVEGQDVLLFIDNIFRFTQAGSEV  257 (463)
T ss_pred             HhcCCceEEEecchHHHHHHHHHH
Confidence            977999999999999999999997

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=100.00  E-value=6.7e-67  Score=526.88  Aligned_cols=253  Identities=70%  Similarity=1.100  Sum_probs=234.0

Q ss_pred             eeeEEEEECCEEEEEeCC-CChhhhhceEEeecCc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           87 IGQVCQVIGAVVDVRFDE-GLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        87 ~G~V~~V~G~vV~v~f~~-glp~i~~~lev~~~~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      +|+|++|.|.++++.|+. .++.+.+.+++...+. .+.+||+.+++++.+++++|+++.||+.|+.|..|++++++|||
T Consensus         2 ~G~v~~v~g~~ie~~~~~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~vg   81 (461)
T TIGR01039         2 KGKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVG   81 (461)
T ss_pred             ccEEEEEEeeEEEEEECCCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEcC
Confidence            599999999999999873 4566655556633122 48889999999999999999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957          165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      ++|||||+|++|+|||+++++....+||+++++|+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.
T Consensus        82 ~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L~~  161 (461)
T TIGR01039        82 KETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQ  161 (461)
T ss_pred             hhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHHHH
Confidence            99999999999999999988776678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957          245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd  324 (348)
                      ++++|+++++.+++||++||||+||+.||++++.+.++        ++||++|++|||+||.+|++++|+|+|+||||||
T Consensus       162 ~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~--------l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd  233 (461)
T TIGR01039       162 ELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGV--------IDKTALVYGQMNEPPGARMRVALTGLTMAEYFRD  233 (461)
T ss_pred             HHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCC--------cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999877667899999999999999999999987764        5799999999999999999999999999999999


Q ss_pred             cCCCcEEEEEechhHHHhhhccc
Q 018957          325 AEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       325 ~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ++|+||||+|||+||||+|+|||
T Consensus       234 ~~G~~VLll~DslTR~A~A~REi  256 (461)
T TIGR01039       234 EQGQDVLLFIDNIFRFTQAGSEV  256 (461)
T ss_pred             hcCCeeEEEecchhHHHHHHHHH
Confidence            78999999999999999999997

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=100.00  E-value=9e-67  Score=527.91  Aligned_cols=254  Identities=60%  Similarity=0.948  Sum_probs=233.2

Q ss_pred             ceeeEEEEECCEEEEEeCCC-ChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~g-lp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      ..|+|++|.|+++++++..+ ++.+.+.+++...+....+||+++++++.+.+++|+++.||++|+.|..||++++||||
T Consensus         2 ~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg   81 (461)
T PRK12597          2 MIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVG   81 (461)
T ss_pred             CccEEEEEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcC
Confidence            36999999999999987643 34454334442323457889999999999999999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957          165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      ++|||||+|++|+|||+.+++....+||+++.||||++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.
T Consensus        82 ~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll~  161 (461)
T PRK12597         82 EAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMM  161 (461)
T ss_pred             hhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHHHH
Confidence            99999999999999999988877778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957          245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd  324 (348)
                      ++++|++++|.+++||++||||+||+.||++++.+.+.        ++||++|++|+|+||.+|++++|+|+|+||||||
T Consensus       162 ~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~--------l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd  233 (461)
T PRK12597        162 ELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGV--------LDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRD  233 (461)
T ss_pred             HHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCC--------cceeEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999987788999999999999999999999988764        4799999999999999999999999999999999


Q ss_pred             cCCCcEEEEEechhHHHhhhccc
Q 018957          325 AEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       325 ~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ++|+||||++||+||||+|+|||
T Consensus       234 ~~G~~VLl~~DslTR~A~A~REi  256 (461)
T PRK12597        234 EEKEDVLLFIDNIFRFVQAGSEV  256 (461)
T ss_pred             hcCCceEEEeccchHHHHHHHHH
Confidence            44999999999999999999997

>PTZ00185 ATPase alpha subunit; Provisional

Probab=100.00  E-value=2.7e-66  Score=525.20  Aligned_cols=258  Identities=22%  Similarity=0.355  Sum_probs=234.4

Q ss_pred             ccccCCceeeEEEEECCEEEEEeCCCChhhhhceEEeec---CceeEEEEeeeccCc-eEEEEeecCCCCCCCCCEEEec
Q 018957           80 EFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH---SVRLVLEVAQHMGEG-VVRTIAMDGTEGLVRGQRVLNT  155 (348)
Q Consensus        80 ~~~~~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~---~~~~~~EVv~~lg~~-~V~~i~~~~t~GL~~G~~V~~t  155 (348)
                      -|+...++|+|++|.|.|+.|+|.+|++++. .-|++.+   +.....+++.+++++ .+.+++|++++||+.|++|.+|
T Consensus        33 ~~~~~~~~G~V~~v~~gia~v~~v~Gl~~~~-~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G~~V~~t  111 (574)
T PTZ00185         33 FFKATEMIGYVHSIDGTIATLIPAPGNPGVA-YNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMAT  111 (574)
T ss_pred             hhhhheeeEEEEEEcCeEEEEeecCCCcccc-cCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCCCEEEEC
Confidence            5677888999999977799998888999986 3455544   334567888899988 6999999999999999999999


Q ss_pred             CCCceecCCccccccEEeeeCcccccC------CCCccc-ccccccCCCcchhhcccccceeecceeeeeceeecccCce
Q 018957          156 GSPITVPVGRVTLGRIMNVIGEPIDEK------GDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK  228 (348)
Q Consensus       156 g~~l~VpVG~~lLGRViD~lG~PiD~~------g~i~~~-~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr  228 (348)
                      |++++||||++|||||+|++|+|||++      +++... .++||+.+||++++|.++++||+||||+||+|+|||||||
T Consensus       112 g~~~~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR  191 (574)
T PTZ00185        112 GKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQR  191 (574)
T ss_pred             CCccEEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCE
Confidence            999999999999999999999999987      445444 4779999999999999999999999999999999999999


Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHh-------hcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecC
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAK-------AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM  301 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~-------~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~ts  301 (348)
                      ++||||+|+|||+|+.++|.||++       .+.++|||++||||+||+.+++++|.+.|++        +||++|++++
T Consensus       192 ~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL--------~~TvVV~AtA  263 (574)
T PTZ00185        192 ELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGAL--------RYTTVMAATA  263 (574)
T ss_pred             EEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCc--------cceEEEEECC
Confidence            999999999999998888888762       2458999999999999999999999999854        6999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       302 dep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+||.+|+++||+|||+|||||| +|+|||++||||||||+|++||
T Consensus       264 dep~~~r~~Apy~a~tiAEYFrd-~GkdVLiv~DDLTr~A~A~REI  308 (574)
T PTZ00185        264 AEPAGLQYLAPYSGVTMGEYFMN-RGRHCLCVYDDLSKQAVAYRQI  308 (574)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcCchHHHHHHHHH
Confidence            99999999999999999999999 8999999999999999999996

>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha

Probab=100.00  E-value=1.1e-65  Score=521.98  Aligned_cols=247  Identities=28%  Similarity=0.454  Sum_probs=222.8

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      ..+|+|++|.|+++.+.   |+|.+. ..|+.....+...||+. ++++.+.+++|+++.||+.|+.|.+||++++||||
T Consensus        26 ~~~G~V~~v~g~ii~v~---gl~~~~-~gEl~~i~~~~~g~Vi~-l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg  100 (497)
T TIGR03324        26 QEVGTVESVSTGIARVH---GLPGVG-FEELLRFPGGLLGIAFN-VDEDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVG  100 (497)
T ss_pred             eEEEEEEEEeceEEEEE---ccCCCC-cCCEEEECCCcEEEEEE-EcCCeEEEEEecCCcCCcCCCEEEECCCCCeEECC
Confidence            35799999999999997   866654 22332222345566664 57778999999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957          165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      ++|||||+|++|+|||+++++...++|||++++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.
T Consensus       101 ~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~~g~GKT~Lal  180 (497)
T TIGR03324       101 DGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAI  180 (497)
T ss_pred             HhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecCCCCCHHHHHH
Confidence            99999999999999999998877788999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957          245 ELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR  323 (348)
Q Consensus       245 ~ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr  323 (348)
                      ++|.|++  +.| +|||++||||+||+.+|+++|.+.++        ++||++|++|+|+||.+|+++||+|||+|||||
T Consensus       181 ~~I~~q~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~--------l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfr  250 (497)
T TIGR03324       181 DTILNQK--GRNVLCIYCAIGQRASAVAKVVANLREHGA--------MDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFM  250 (497)
T ss_pred             HHHHHhc--CCCcEEEEEEeccCcHHHHHHHHHhhhcCC--------cceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            7777774  335 59999999999999999999998874        479999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEechhHHHhhhccc
Q 018957          324 DAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       324 d~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      | +|+||||+||||||||+|++||
T Consensus       251 d-~G~~VLlv~DdlTr~A~A~REi  273 (497)
T TIGR03324       251 E-QGRDVLIVYDDLTQHARAYREL  273 (497)
T ss_pred             h-CCCCEEEEEcChhHHHHHHHHH
Confidence            9 8999999999999999999987

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.

>PRK02118 V-type ATP synthase subunit B; Provisional

Probab=100.00  E-value=1.8e-65  Score=514.03  Aligned_cols=248  Identities=19%  Similarity=0.289  Sum_probs=221.5

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      ..+|+|++|.|++++++|+.  +.+.+.+++...+.....||+ +++++.+++++|++|+||++|++|.+||++++||||
T Consensus         3 ~~~g~v~~i~G~~v~v~~~~--~~~ge~~~i~~~~~~~~geVi-~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg   79 (436)
T PRK02118          3 KIYTKITDITGNVITVEAEG--VGYGELATVERKDGSSLAQVI-RLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYS   79 (436)
T ss_pred             ceeEEEEEEECcEEEEEeCC--CCCCCEEEEEcCCCCEEEEEE-EEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcC
Confidence            35899999999999999742  444433454321234678885 668899999999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957          165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      ++|||||+|++|+|||+++++.. ..+|++++||||++|.+++++|+||||+||+|+||+||||+||||++|+|||+|+.
T Consensus        80 ~~lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~~  158 (436)
T PRK02118         80 ESLLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLA  158 (436)
T ss_pred             ccccCCEEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHHH
Confidence            99999999999999999887754 45899999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957          245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd  324 (348)
                      +|+++.   +.+++||++||||+||+.+||++|++.+++        +||++|++|||+||++|+++||+|+|+||||||
T Consensus       159 ~ia~~~---~~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l--------~rtvlv~~~adep~~~R~~~~~~AltiAEyfrd  227 (436)
T PRK02118        159 RIALQA---EADIIILGGMGLTFDDYLFFKDTFENAGAL--------DRTVMFIHTASDPPVECLLVPDMALAVAEKFAL  227 (436)
T ss_pred             HHHHhh---CCCeEEEEEeccchhHHHHHHHHHhhCCCc--------ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            777642   348999999999999999999999999854        699999999999999999999999999999999


Q ss_pred             cCCCcEEEEEechhHHHhhhccc
Q 018957          325 AEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       325 ~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +.|+||||+||||||||||++||
T Consensus       228 ~g~~~VLli~DdlTr~a~A~REI  250 (436)
T PRK02118        228 EGKKKVLVLLTDMTNFADALKEI  250 (436)
T ss_pred             cCCCCEEEeccCchHHHHHHHHH
Confidence            43399999999999999999997

>PRK04196 V-type ATP synthase subunit B; Provisional

Probab=100.00  E-value=2.1e-64  Score=511.48  Aligned_cols=250  Identities=23%  Similarity=0.346  Sum_probs=222.7

Q ss_pred             CceeeEEEEECCEEEEEeCCCC-hhhhhceEEee--cCceeEEEEeeeccCceEEEEeecCCCCCC-CCCEEEecCCCce
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGL-PPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT  160 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~gl-p~i~~~lev~~--~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~-~G~~V~~tg~~l~  160 (348)
                      ..||+|++|.|++++++   |+ +..++++..+.  .+.....||+.+. ++.+.+++|+++.||+ .|++|..||++++
T Consensus         2 ~~yg~V~~i~g~~v~v~---g~~~~~~ge~~~i~~~~~~~~~geVi~~~-~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~   77 (460)
T PRK04196          2 KEYRTVSEIKGPLLFVE---GVEGVAYGEIVEIELPNGEKRRGQVLEVS-EDKAVVQVFEGTTGLDLKDTKVRFTGEPLK   77 (460)
T ss_pred             ceeEEEEEEECcEEEEe---ccCCCCCCCEEEEEcCCCCEEEEEEEEEe-CCeEEEEEccCCCCCCCCCCEEEeCCCccE
Confidence            35899999999999997   66 33344544333  2234678888775 4567799999999999 8999999999999


Q ss_pred             ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957          161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (348)
Q Consensus       161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT  240 (348)
                      ||||++|||||+|++|+|||+++++....++|+++.+|+|++|.++++||+||||+||+|+|||||||+||||++|+|||
T Consensus        78 V~vg~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs  157 (460)
T PRK04196         78 LPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHN  157 (460)
T ss_pred             EEcCcccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCcc
Confidence            99999999999999999999999887777889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc----CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957          241 VLIMELINNVAKAH----GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL  316 (348)
Q Consensus       241 ~L~~~ii~n~a~~~----~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~  316 (348)
                      +|+.+|+++. .++    +.+|||++||||+||+.+|+++|.+.++        ++||++|++|+|+||.+|+++||+|+
T Consensus       158 ~L~~~ia~~~-~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~--------l~rtvvV~atsd~p~~~R~~a~~~a~  228 (460)
T PRK04196        158 ELAAQIARQA-KVLGEEENFAVVFAAMGITFEEANFFMEDFEETGA--------LERSVVFLNLADDPAIERILTPRMAL  228 (460)
T ss_pred             HHHHHHHHhh-hhccCCCceEEEEEEeccccHHHHHHHHHHHhcCC--------cceEEEEEEcCCCCHHHHHHHHHHHH
Confidence            9999877653 332    2389999999999999999999998874        57999999999999999999999999


Q ss_pred             HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+||||||++|+||||+|||+||||+|++||
T Consensus       229 tiAEyfr~d~G~~VLli~DslTR~A~A~REI  259 (460)
T PRK04196        229 TAAEYLAFEKGMHVLVILTDMTNYCEALREI  259 (460)
T ss_pred             HHHHHHHHhcCCcEEEEEcChHHHHHHHHHH
Confidence            9999999438999999999999999999997

>CHL00059 atpA ATP synthase CF1 alpha subunit

Probab=100.00  E-value=1.3e-64  Score=512.39  Aligned_cols=246  Identities=22%  Similarity=0.333  Sum_probs=222.1

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhh-hhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i-~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      .+|+|++|.|.++.+.   |++++ ++++..+.  .+...+|+ .++++.+.+++|+++.||+.|++|..||++++||||
T Consensus         6 ~~G~V~~v~~~ii~v~---Gl~~~~~ge~~~i~--~~~~g~vi-~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg   79 (485)
T CHL00059          6 NTGTVLQVGDGIARIY---GLDEVMAGELVEFE--DGTIGIAL-NLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVS   79 (485)
T ss_pred             eeEEEEEEeccEEEEe---ccccCCcCCEEEEC--CCCEEEEE-EEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEcC
Confidence            4699999999999997   87433 34443332  33445554 568888999999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957          165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      ++|||||+|++|+|||+++++....++|++.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|++
T Consensus        80 ~~llGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~Lal  159 (485)
T CHL00059         80 EAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVAT  159 (485)
T ss_pred             HhhcCCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHHH
Confidence            99999999999999999998877778899999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957          245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd  324 (348)
                      ++|.|+++ ++.+|||++||||+||+.+|+++|.+.++        ++||++|++|+|+||.+|+++||+|||+||||||
T Consensus       160 ~~I~~q~~-~dv~cV~~~IGer~rev~e~~~~l~~~~~--------l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~  230 (485)
T CHL00059        160 DTILNQKG-QNVICVYVAIGQKASSVAQVVTTLQERGA--------MEYTIVVAETADSPATLQYLAPYTGAALAEYFMY  230 (485)
T ss_pred             HHHHhccc-CCeEEEEEEecCCchHHHHHHHHhhcccc--------hhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHH
Confidence            88888743 34578999999999999999999998874        4799999999999999999999999999999999


Q ss_pred             cCCCcEEEEEechhHHHhhhccc
Q 018957          325 AEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       325 ~~G~dVLli~DslTR~A~A~~e~  347 (348)
                       +|+||||+||||||||+|++||
T Consensus       231 -~G~~VLlv~DdlTr~A~A~REi  252 (485)
T CHL00059        231 -RGRHTLIIYDDLSKQAQAYRQM  252 (485)
T ss_pred             -cCCCEEEEEcChhHHHHHHHHH
Confidence             8999999999999999999986

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=100.00  E-value=1.5e-64  Score=499.16  Aligned_cols=248  Identities=29%  Similarity=0.499  Sum_probs=220.0

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhceE-Eeec--CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALE-VVDH--SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT  160 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~le-v~~~--~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~  160 (348)
                      ...+|+|++|.|.++++.   |+-...++++ +...  .....+||+.+.++ .+.+++|++..|+.+|++|..++++++
T Consensus        22 ~~~~G~v~~v~G~~lea~---g~~~~iGelc~i~~~~~~~~~~aEVvgf~~~-~~~L~p~~~~~gv~~g~~V~~~~~~~~   97 (441)
T COG1157          22 YKRRGRLTRVTGLLLEAV---GPQARIGELCKIERSRGSEKVLAEVVGFNEE-RVLLMPFEPVEGVSPGAEVVPTGRPLS   97 (441)
T ss_pred             ceEEEEEEEEeeeEEEEe---cCCCcccceEEEEecCCCCceeEEEEEEcCC-eEEEeccCccccCCCCCEEEecCCccc
Confidence            445799999999999986   6544455544 4332  22238999998554 566999999999999999999999999


Q ss_pred             ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957          161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (348)
Q Consensus       161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT  240 (348)
                      +|+|++|||||+|++|+|||+++.+....+.|+..+||||+.|..++++|.||||+||+|+|||+|||+|||+++|||||
T Consensus        98 v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKS  177 (441)
T COG1157          98 VPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKS  177 (441)
T ss_pred             cccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCcHH
Confidence            99999999999999999999988888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957          241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE  320 (348)
Q Consensus       241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE  320 (348)
                      ||+.||++|.   ..|++|+++||||+|||.||+    |..   ++ ++.++|||+|++|+|+||.+|..++++|++|||
T Consensus       178 tLLgMiar~t---~aDv~ViaLIGERGREVrEFI----E~~---Lg-~egl~rsViVvATSD~s~l~R~~aa~~At~IAE  246 (441)
T COG1157         178 TLLGMIARNT---EADVNVIALIGERGREVREFI----EKD---LG-EEGLKRSVVVVATSDESALMRLKAAFTATTIAE  246 (441)
T ss_pred             HHHHHHhccc---cCCEEEEEEeeccchhHHHHH----HHh---cc-hhhccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            9999998864   359999999999999996655    443   22 235789999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          321 HFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       321 yfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||| |||||||+|||+||||+|++||
T Consensus       247 yFRD-qG~~VLL~mDSlTRfA~AqREI  272 (441)
T COG1157         247 YFRD-QGKRVLLIMDSLTRFAMAQREI  272 (441)
T ss_pred             HHHh-CCCeEEEEeecHHHHHHHHHHH
Confidence            9999 8999999999999999999997

>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit

Probab=100.00  E-value=3.1e-64  Score=509.44  Aligned_cols=249  Identities=22%  Similarity=0.339  Sum_probs=221.7

Q ss_pred             ceeeEEEEECCEEEEEeCCCC-hhhhhceEEee--cCceeEEEEeeeccCceEEEEeecCCCCCCCCCE-EEecCCCcee
Q 018957           86 AIGQVCQVIGAVVDVRFDEGL-PPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQR-VLNTGSPITV  161 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~gl-p~i~~~lev~~--~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~-V~~tg~~l~V  161 (348)
                      .|++|++|.|++++++   |+ ...++++..+.  .+.....||+.+. ++.+.+++|+++.||++|+. |.+||++++|
T Consensus         1 ~y~~v~~i~g~iv~v~---g~~~~~~ge~~~i~~~~~~~~~geVv~~~-~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v   76 (458)
T TIGR01041         1 EYSTITEIAGPLVFVE---GVEPVAYNEIVEIETPDGEKRRGQVLDSS-EGLAVVQVFEGTTGLDPTGTKVRFTGETLKL   76 (458)
T ss_pred             CccEEEEEEccEEEEE---ccCCCCcCCEEEEEcCCCcEEEEEEEEEE-CCEEEEEEecCCcCcCCCCcEEEECCCceEE
Confidence            4799999999999997   66 33445544432  2233678888774 56688999999999999986 9999999999


Q ss_pred             cCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957          162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV  241 (348)
Q Consensus       162 pVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~  241 (348)
                      |||++|||||+|++|+|||+++++..+.+||+++.+|+|++|.++++||+||||+||+|+||+||||+||||++|+|||+
T Consensus        77 ~vg~~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~  156 (458)
T TIGR01041        77 PVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNE  156 (458)
T ss_pred             EcChhhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHH
Confidence            99999999999999999999988877778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc----CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHH
Q 018957          242 LIMELINNVAKAH----GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT  317 (348)
Q Consensus       242 L~~~ii~n~a~~~----~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~t  317 (348)
                      |+.+|+++. .++    +.+|||++||||+||+.+|+++|.+.+.        ++||++|++|||+||.+|+++||+|+|
T Consensus       157 L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~--------l~rtvvv~atsd~p~~~R~~a~~~a~t  227 (458)
T TIGR01041       157 LAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGA--------LERAVVFLNLADDPAVERIVTPRMALT  227 (458)
T ss_pred             HHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCC--------cceEEEEEECCCCCHHHHHHHHHHHHH
Confidence            999977653 321    2389999999999999999999988874        579999999999999999999999999


Q ss_pred             HHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          318 VAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       318 iAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +||||||++|+||||+|||+||||+|++||
T Consensus       228 iAEyfr~d~G~~VLli~DslTR~A~A~REI  257 (458)
T TIGR01041       228 AAEYLAFEKDMHVLVILTDMTNYCEALREI  257 (458)
T ss_pred             HHHHHHHccCCcEEEEEcChhHHHHHHHHH
Confidence            999999448999999999999999999997

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>PRK13343 F0F1 ATP synthase subunit alpha; Provisional

Probab=100.00  E-value=2e-64  Score=514.17  Aligned_cols=246  Identities=30%  Similarity=0.480  Sum_probs=222.2

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR  165 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~  165 (348)
                      .+|+|++|.|+++++.   |+|++. ..|+.....+. .+.+.+++++.+.+++|+++.||+.|+.|..||++++||||+
T Consensus        27 ~~G~V~~v~g~i~~v~---gl~~~~-~ge~~~i~~~~-~g~V~~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~  101 (502)
T PRK13343         27 EIGRVESVGDGIAFVS---GLPDAA-LDELLRFEGGS-RGFAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGD  101 (502)
T ss_pred             EeeEEEEEeCCEEEEe---CCCCCC-CCCEEEECCCc-EEEEEEecCCeEEEEEeeCCCCCCCCCEeEecCCcceeecCH
Confidence            5799999999999996   877554 22222222334 445556788899999999999999999999999999999999


Q ss_pred             cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957          166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME  245 (348)
Q Consensus       166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~  245 (348)
                      +|||||+|++|+|||+++++....++|++..+|++++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++
T Consensus       102 ~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g~~g~GKt~Lal~  181 (502)
T PRK13343        102 GLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAID  181 (502)
T ss_pred             HhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeCCCCCCccHHHHH
Confidence            99999999999999999998888889999999999999999999999999999999999999999999999999999878


Q ss_pred             HHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957          246 LINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       246 ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd  324 (348)
                      +|.|++  +.| +|||++||||+||+.+|++++.+.+.        ++||++|++|+|+||.+|+++||+|||+||||||
T Consensus       182 ~i~~~~--~~dv~~V~~~IGer~rev~e~~~~l~~~~~--------l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd  251 (502)
T PRK13343        182 AIINQK--DSDVICVYVAIGQKASAVARVIETLREHGA--------LEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRD  251 (502)
T ss_pred             HHHhhc--CCCEEEEEEEeccChHHHHHHHHHHHhcCc--------cceeEEEEecccccHHHHHHHHHHHHHHHHHHHh
Confidence            887774  335 57999999999999999999998874        4799999999999999999999999999999999


Q ss_pred             cCCCcEEEEEechhHHHhhhccc
Q 018957          325 AEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       325 ~~G~dVLli~DslTR~A~A~~e~  347 (348)
                       +|+||||+||||||||+|++||
T Consensus       252 -~G~~VLlv~DdlTr~A~A~REi  273 (502)
T PRK13343        252 -QGQDALIVYDDLSKHAAAYREL  273 (502)
T ss_pred             -CCCCEEEEecchHHHHHHHHHH
Confidence             8999999999999999999986

>PRK09281 F0F1 ATP synthase subunit alpha; Validated

Probab=100.00  E-value=2.6e-64  Score=514.79  Aligned_cols=246  Identities=25%  Similarity=0.419  Sum_probs=221.6

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhh-hhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i-~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      .+|+|++|.|+++.++   |++.+ ++++..+.  .+...+|+ .++++.+.+++|+++.||+.|+.|.+||++++||||
T Consensus        27 ~~G~V~~v~g~~v~v~---g~~~~~~ge~~~i~--~~~~g~Vi-~~~~~~~~~~~~~~~~gi~~g~~V~~~~~~~~v~vg  100 (502)
T PRK09281         27 EVGTVISVGDGIARVY---GLDNVMAGELLEFP--GGVYGIAL-NLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVG  100 (502)
T ss_pred             EEEEEEEEeCCEEEEE---CccccccCCEEEEC--CCcEEEEE-EEcCCeEEEEEecCcccccCCCeeeecCCceEEecC
Confidence            4799999999999986   77443 33433332  33445555 557888999999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957          165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      ++|||||+|++|+|||+++++....++|++++||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|++
T Consensus       101 ~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~lal  180 (502)
T PRK09281        101 EALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAI  180 (502)
T ss_pred             HHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecCCCCCchHHHH
Confidence            99999999999999999998877888999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957          245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd  324 (348)
                      ++|.|++. ++.+|||++||||+||+.+|+++|.+.++        ++||++|++|+|+||.+|+++||+|||+||||||
T Consensus       181 ~~i~~~~~-~dv~~V~~~IGer~~ev~e~~~~~~~~~~--------l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd  251 (502)
T PRK09281        181 DTIINQKG-KDVICIYVAIGQKASTVAQVVRKLEEHGA--------MEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMD  251 (502)
T ss_pred             HHHHHhcC-CCeEEEEEEecCChHHHHHHHHHHhhcCC--------ccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888753 33457999999999999999999998874        4799999999999999999999999999999999


Q ss_pred             cCCCcEEEEEechhHHHhhhccc
Q 018957          325 AEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       325 ~~G~dVLli~DslTR~A~A~~e~  347 (348)
                       +|+||||+||||||||+|++||
T Consensus       252 -~G~~VLli~DdlTr~A~A~REi  273 (502)
T PRK09281        252 -NGKDALIVYDDLSKQAVAYRQL  273 (502)
T ss_pred             -cCCCEEEEecCchHHHHHHHHH
Confidence             7999999999999999999986

>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit

Probab=100.00  E-value=5.1e-64  Score=512.52  Aligned_cols=246  Identities=26%  Similarity=0.437  Sum_probs=220.5

Q ss_pred             ceeeEEEEECCEEEEEeCCCChh-hhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPP-ILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~-i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      .+|+|++|.|+++.++   |++. .++++..+.  .+...||+ .++++.+.+++|+++.||+.|+.|..||++++||||
T Consensus        26 ~~G~V~~v~g~ii~v~---g~~~~~~ge~~~i~--~~~~g~Vi-~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg   99 (501)
T TIGR00962        26 EVGTVVSVGDGIARVY---GLENVMSGELIEFE--GGVQGIAL-NLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPVG   99 (501)
T ss_pred             EEEEEEEEeCCEEEEE---CCcCCCCCCEEEEC--CCeEEEEE-EecCCeEEEEEecCCcCCCCCCeeEecCCccEEecC
Confidence            4799999999999997   7733 334433332  33444554 568888999999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957          165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      ++|||||+|++|+|||+++++....++|++..+|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|++
T Consensus       100 ~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g~GKt~Lal  179 (501)
T TIGR00962       100 DGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAI  179 (501)
T ss_pred             hHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecCCCCCccHHHH
Confidence            99999999999999999988877778899999999999999999999999999999999999999999999999999977


Q ss_pred             HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957          245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd  324 (348)
                      ++|.|++. ++.+|||++||||+||+.+|+++|.+.++        ++||++|++|+|+||.+|+++||+|||+||||||
T Consensus       180 ~~i~~~~~-~dv~~V~~~IGer~rev~e~~~~~~~~~~--------l~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd  250 (501)
T TIGR00962       180 DTIINQKD-SDVYCVYVAIGQKASTVAQVVRKLEEHGA--------MDYTIVVAATASDSASLQYLAPYTGCTMAEYFRD  250 (501)
T ss_pred             HHHHhhcC-CCeEEEEEEccCChHHHHHHHHHHHhcCc--------cceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            77877743 33347999999999999999999998874        4799999999999999999999999999999999


Q ss_pred             cCCCcEEEEEechhHHHhhhccc
Q 018957          325 AEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       325 ~~G~dVLli~DslTR~A~A~~e~  347 (348)
                       +|+||||+|||+||||+|++||
T Consensus       251 -~G~~VLlv~Ddltr~A~A~REi  272 (501)
T TIGR00962       251 -NGKHALIIYDDLSKHAVAYRQI  272 (501)
T ss_pred             -cCCCEEEEecchHHHHHHHHHH
Confidence             7999999999999999999986

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.

>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit

Probab=100.00  E-value=1.9e-62  Score=504.15  Aligned_cols=249  Identities=28%  Similarity=0.428  Sum_probs=216.5

Q ss_pred             eeEEEEECCEEEEEeCCCCh-hhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCcc
Q 018957           88 GQVCQVIGAVVDVRFDEGLP-PILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV  166 (348)
Q Consensus        88 G~V~~V~G~vV~v~f~~glp-~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~  166 (348)
                      |+|.+|.|++|.++   |++ ..++++..++ +.++..||+.+.++ .+.+++|++|.||++|++|..||++++|++|++
T Consensus         2 G~I~~V~Gpvv~a~---g~~~~~~gE~v~v~-~~~l~gEVi~~~~d-~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpg   76 (578)
T TIGR01043         2 GRIIRVSGPLVVAD---GMKGAQMYEVVKVG-EEGLIGEIIRIEGD-KAFIQVYEETSGIKPGEPVVGTGAPLSVELGPG   76 (578)
T ss_pred             CEEEEEECCEEEEe---cCCCCCcCCEEEEC-CCcEEEEEEEEcCC-eEEEEECCCCCCCCCCCEEEECCCccEEEcCHH
Confidence            89999999999997   654 3333433333 34688999988555 566999999999999999999999999999999


Q ss_pred             ccccEEeeeCcccccCCC----C----------ccc--------------------------------------------
Q 018957          167 TLGRIMNVIGEPIDEKGD----L----------KTE--------------------------------------------  188 (348)
Q Consensus       167 lLGRViD~lG~PiD~~g~----i----------~~~--------------------------------------------  188 (348)
                      |||||+|++|+|||+.++    +          ..+                                            
T Consensus        77 lLGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v  156 (578)
T TIGR01043        77 LLGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEI  156 (578)
T ss_pred             HhcceeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceE
Confidence            999999999999998631    1          111                                            


Q ss_pred             -----------------------------ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcH
Q 018957          189 -----------------------------HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK  239 (348)
Q Consensus       189 -----------------------------~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGK  239 (348)
                                                   +.||++. ||++.+|.++++||+||||+||+|+||+||||++|||++|+||
T Consensus       157 ~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GK  235 (578)
T TIGR01043       157 VEIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGK  235 (578)
T ss_pred             EEeccCCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCH
Confidence                                         2679987 7779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHH
Q 018957          240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA  319 (348)
Q Consensus       240 T~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiA  319 (348)
                      |+|+++++++.   +.|++||++||||++|+.+++++|.+....+++ ++.|+||++|+||||+|+.+|++++|+|+|+|
T Consensus       236 T~l~~~lak~~---~adivVyvg~GERG~E~~e~le~f~~l~dp~~g-~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiA  311 (578)
T TIGR01043       236 TVTQHQLAKWS---DADIVVYIGCGERGNEMTDVLEEFPELKDPKTG-KPLMERTVLIANTSNMPVAAREASIYTGITIA  311 (578)
T ss_pred             HHHHHHHHhcC---CCCEEEEEEeccChHHHHHHHHHhHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            99999888752   569999999999999999999999875422222 34789999999999999999999999999999


Q ss_pred             HHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          320 EHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       320 Eyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||||| +|+||||++||+||||+|++||
T Consensus       312 EYfRD-~G~~Vllm~DS~sR~AeAlREI  338 (578)
T TIGR01043       312 EYFRD-MGYDVALMADSTSRWAEAMREI  338 (578)
T ss_pred             HHHHH-CCCCEEEEecChhHHHHHHHHH
Confidence            99999 7999999999999999999997

Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.

>PRK04192 V-type ATP synthase subunit A; Provisional

Probab=100.00  E-value=4.8e-62  Score=501.81  Aligned_cols=252  Identities=29%  Similarity=0.425  Sum_probs=219.7

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR  165 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~  165 (348)
                      ..|+|.+|.|++|++++..+ +.++..+++ + +.++..||+++.++. +.+++|++|.||++|++|.+||++++|++|+
T Consensus         3 ~~G~I~~V~Gpvv~~~~~~~-~~~~E~v~v-~-~~~l~gEVi~~~~d~-a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGp   78 (586)
T PRK04192          3 TKGKIVRVSGPLVVAEGMGG-ARMYEVVRV-G-EEGLIGEIIRIEGDK-ATIQVYEETSGIKPGEPVEFTGEPLSVELGP   78 (586)
T ss_pred             ceeEEEEEECcEEEEEeCCC-CCccCEEEE-C-CCcEEEEEEEEeCCc-eEEEEecCCcCCCCCCEEEeCCCccEEEcCH
Confidence            57999999999999984332 333332333 3 346899999986665 5799999999999999999999999999999


Q ss_pred             cccccEEeeeCcccccCCC----C----------cc--------------------------------------------
Q 018957          166 VTLGRIMNVIGEPIDEKGD----L----------KT--------------------------------------------  187 (348)
Q Consensus       166 ~lLGRViD~lG~PiD~~g~----i----------~~--------------------------------------------  187 (348)
                      +|||||+|++|+|||+.+.    +          ..                                            
T Consensus        79 glLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~  158 (586)
T PRK04192         79 GLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGT  158 (586)
T ss_pred             HhcCCeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceE
Confidence            9999999999999997641    1          10                                            


Q ss_pred             -------------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCC
Q 018957          188 -------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG  236 (348)
Q Consensus       188 -------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~G  236 (348)
                                                     .++||++.++|. .+|..+++||.||||+||+|+||+||||++|||++|
T Consensus       159 ~~~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G  237 (586)
T PRK04192        159 VKEIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFG  237 (586)
T ss_pred             EEEEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCCC
Confidence                                           145899999887 999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957          237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL  316 (348)
Q Consensus       237 vGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~  316 (348)
                      +|||+|+++++++.   +.|++||++||||+||++|++++|.+.....++ +..++||++|+||||+|+.+|++++|+|+
T Consensus       238 ~GKTvl~~~iak~a---~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g-~~~m~RTvlVanTSn~Pv~aR~~s~ytgi  313 (586)
T PRK04192        238 SGKTVTQHQLAKWA---DADIVIYVGCGERGNEMTEVLEEFPELIDPKTG-RPLMERTVLIANTSNMPVAAREASIYTGI  313 (586)
T ss_pred             CCHHHHHHHHHhcC---CCCEEEEEEcCcChHHHHHHHHHHHhhcccccc-cccceeEEEEEECCCCCHHHHHHHHHHHH
Confidence            99999999988763   569999999999999999999999975322222 34688999999999999999999999999


Q ss_pred             HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+|||||| +|+||||++||+||||+|++||
T Consensus       314 TiAEYfRd-~G~~Vllm~DStSR~AeAlREI  343 (586)
T PRK04192        314 TIAEYYRD-MGYDVLLMADSTSRWAEALREI  343 (586)
T ss_pred             HHHHHHHH-CCCCEEEEecChHHHHHHHHHH
Confidence            99999999 7999999999999999999997

>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit

Probab=100.00  E-value=1.1e-61  Score=488.28  Aligned_cols=249  Identities=21%  Similarity=0.291  Sum_probs=216.3

Q ss_pred             ceeeEEEEECCEEEEEeCCCC-hhhhhceEEe--ecCceeEEEEeeeccCceEEEEeecCCCCCCC-CCEEEecCCCcee
Q 018957           86 AIGQVCQVIGAVVDVRFDEGL-PPILTALEVV--DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVR-GQRVLNTGSPITV  161 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~gl-p~i~~~lev~--~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~-G~~V~~tg~~l~V  161 (348)
                      .|++|++|.|+++.+.   |+ ...+++++.+  ..+.....||+.+ .++.+.+++|++++||+. |+.|..|+++++|
T Consensus         1 ~y~~v~~i~G~~i~~~---g~~~~~~Ge~~~i~~~~~~~~~geVi~~-~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v   76 (466)
T TIGR01040         1 EYRTVSGVNGPLVILD---NVKFPRFAEIVNLTLPDGTVRSGQVLEV-SGNKAVVQVFEGTSGIDAKKTTCEFTGDILRT   76 (466)
T ss_pred             CCccceEEEccEEEEE---CCCCCCcCCEEEEEeCCCCEEEEEEEEE-eCCeEEEEEcCCCCCcccCCCEEEECCCccEE
Confidence            3789999999999987   66 3334454443  2222356788877 555677999999999996 9999999999999


Q ss_pred             cCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957          162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV  241 (348)
Q Consensus       162 pVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~  241 (348)
                      |||++|||||+|++|+|||+++++....++||++++|||++|.++++||+||||+||+|+|||||||+||||++|+|||+
T Consensus        77 ~vg~~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~  156 (466)
T TIGR01040        77 PVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE  156 (466)
T ss_pred             EcCcccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHH
Confidence            99999999999999999999988877778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh-----h-------cCCEEEEEEeeccchhHHH-HHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHH
Q 018957          242 LIMELINNVAK-----A-------HGGFSVFAGVGERTREGND-LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR  308 (348)
Q Consensus       242 L~~~ii~n~a~-----~-------~~~~~V~~~IGER~rEv~~-~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r  308 (348)
                      |+.+|++|...     +       ++.+|||++|||| ||+.+ ++++|.+.|+        ++||++|++|||+||.+|
T Consensus       157 L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~~g~--------l~rtvvv~atsd~p~~~R  227 (466)
T TIGR01040       157 IAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEENGS--------MERVCLFLNLANDPTIER  227 (466)
T ss_pred             HHHHHHHhhccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHhcCC--------cceEEEEEECCCCCHHHH
Confidence            99998776421     1       1128999999999 66655 5677887774        469999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       309 ~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +++||+|+|+||||||++|+||||++|||||||+|++||
T Consensus       228 ~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REi  266 (466)
T TIGR01040       228 IITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREV  266 (466)
T ss_pred             HHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHH
Confidence            999999999999999558999999999999999999997

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit

Probab=100.00  E-value=7.6e-62  Score=498.30  Aligned_cols=252  Identities=28%  Similarity=0.398  Sum_probs=218.3

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhh-hhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i-~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      ++|+|.+|.|++|.++   |++.+ ++++..++ +.+++.||+.+. ++.+.+++|++|.||++|++|..||++++|++|
T Consensus         1 ~~G~V~~v~G~vV~a~---g~~~~~~gE~v~v~-~~~l~gEVI~l~-~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lG   75 (591)
T TIGR01042         1 EYGYIYKVSGPVVVAE---NMAGAAMYELVRVG-HDELVGEIIRLE-GDKATIQVYEETSGLTVGDPVLRTGKPLSVELG   75 (591)
T ss_pred             CceEEEEEECCEEEEe---cCCCCCcCCEEEEC-CCceEEEEEEEc-CCeEEEEEccCccCCCCCCEEEeCCCccEEEcC
Confidence            3699999999999997   76322 23333333 346889999874 556779999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCC----C-----------Ccc------------------------------------------
Q 018957          165 RVTLGRIMNVIGEPIDEKG----D-----------LKT------------------------------------------  187 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g----~-----------i~~------------------------------------------  187 (348)
                      ++|||||+|++|+|||+.+    .           +..                                          
T Consensus        76 pglLG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~  155 (591)
T TIGR01042        76 PGILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRA  155 (591)
T ss_pred             HHHhhcccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCC
Confidence            9999999999999999753    1           110                                          


Q ss_pred             ---------------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecC
Q 018957          188 ---------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGG  234 (348)
Q Consensus       188 ---------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~  234 (348)
                                                       .+.||++. ||++.+|.++++||.||+|+||+|+||+||||++|||+
T Consensus       156 ~g~v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg  234 (591)
T TIGR01042       156 RGTITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGA  234 (591)
T ss_pred             ceEEEEEccCCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcC
Confidence                                             02689998 78899999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccC-cccCCCeeEEEEecCCCCHHHHHHHHH
Q 018957          235 AGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLG-DKQADSKCALVYGQMNEPPGARARVGL  313 (348)
Q Consensus       235 ~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~-~~~~~~rtvvV~~tsdep~~~r~~a~~  313 (348)
                      +|||||+|+++++++   .+.|++||++||||+||++|++++|.+......+ .+..|+||++|+||||+|+.+|++++|
T Consensus       235 ~G~GKT~l~~~lak~---s~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~y  311 (591)
T TIGR01042       235 FGCGKTVISQSLSKY---SNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIY  311 (591)
T ss_pred             CCcCHHHHHHHHHhc---cCcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHH
Confidence            999999999998764   2569999999999999999999999876432222 134689999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       314 ~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|+|+|||||| +|+||||++||+||||+|++||
T Consensus       312 tg~tiAEYfRD-~G~~Vll~~DS~tR~AeAlREI  344 (591)
T TIGR01042       312 TGITLAEYFRD-MGYNVSMMADSTSRWAEALREI  344 (591)
T ss_pred             HHHHHHHHHHh-cCCCEEEEecChHHHHHHHHHH
Confidence            99999999999 7999999999999999999997

This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=4.9e-61  Score=483.40  Aligned_cols=251  Identities=28%  Similarity=0.428  Sum_probs=220.6

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP  162 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp  162 (348)
                      ...+|+|++|.|+++++++++....+.+.+++...+. ...+||+++.++ .+.+++|+++.||+.|+.|..||++++||
T Consensus        15 ~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~-~~~l~~~~~~~gi~~g~~V~~tg~~~~v~   93 (442)
T PRK08927         15 LVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGD-RALLMPFGPLEGVRRGCRAVIANAAAAVR   93 (442)
T ss_pred             ceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCC-eEEEEEccCccCCCCCCEEEeCCCccEEE
Confidence            3457999999999999986542344443345523122 478899999777 57899999999999999999999999999


Q ss_pred             CCccccccEEeeeCcccccCCCCccc-ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957          163 VGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV  241 (348)
Q Consensus       163 VG~~lLGRViD~lG~PiD~~g~i~~~-~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~  241 (348)
                      ||++|||||+|++|+|||+++++... .++||++.||||++|.+++++|+||||+||+|+|+++|||++|||++|+|||+
T Consensus        94 vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKTt  173 (442)
T PRK08927         94 PSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSV  173 (442)
T ss_pred             CChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCHHH
Confidence            99999999999999999999887654 57899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957          242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH  321 (348)
Q Consensus       242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy  321 (348)
                      |+++++++.   +.+++||++||||+||+.+|+++.....        .++||++|++|||+||.+|++++|+|+|+|||
T Consensus       174 LL~~I~~~~---~~d~~v~~~iGER~rEv~ef~~~~l~~~--------~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEy  242 (442)
T PRK08927        174 LLSMLARNA---DADVSVIGLIGERGREVQEFLQDDLGPE--------GLARSVVVVATSDEPALMRRQAAYLTLAIAEY  242 (442)
T ss_pred             HHHHHHhcc---CCCEEEEEEEecCcHHHHHHHHHHhhcc--------CceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            998766542   4578899999999999999887543322        35799999999999999999999999999999


Q ss_pred             hhhcCCCcEEEEEechhHHHhhhccc
Q 018957          322 FRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       322 frd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||| +||||||++|||||||+|++||
T Consensus       243 frd-~G~~Vll~~DslTr~A~A~REi  267 (442)
T PRK08927        243 FRD-QGKDVLCLMDSVTRFAMAQREI  267 (442)
T ss_pred             HHH-CCCcEEEEEeCcHHHHhhhhHH
Confidence            999 7999999999999999999996

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=3.4e-61  Score=483.62  Aligned_cols=247  Identities=26%  Similarity=0.457  Sum_probs=223.3

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEeec-CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV  163 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV  163 (348)
                      ..+|+|++|.|.++++.   |+....++++.++. +..+.+||+++.++ .+.+++|++++||+.|++|..||++++|||
T Consensus        24 ~~~G~v~~v~g~~i~~~---g~~~~ige~~~i~~~~~~~~~EVv~~~~~-~~~l~~~~~~~gi~~g~~V~~tg~~~~v~v   99 (444)
T PRK08972         24 VASGKLVRVVGLTLEAT---GCRAPVGSLCSIETMAGELEAEVVGFDGD-LLYLMPIEELRGVLPGARVTPLGEQSGLPV   99 (444)
T ss_pred             ceeeEEEEEEcCEEEEe---eCCCCCCCEEEEecCCCcEEEEEEEecCC-EEEEEECCCcCCCCCCCEEEECCCccEEEc
Confidence            34699999999999997   55555556555532 34588999998655 688999999999999999999999999999


Q ss_pred             CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957          164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI  243 (348)
Q Consensus       164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~  243 (348)
                      |++|||||+|++|+|||+++++....+||+++++|+|++|.++++||+|||++||.++|+++|||++|||++|+|||||+
T Consensus       100 g~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL  179 (444)
T PRK08972        100 GMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLL  179 (444)
T ss_pred             ChhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChhHHH
Confidence            99999999999999999999887777899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957          244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR  323 (348)
Q Consensus       244 ~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr  323 (348)
                      .+++++.   +.+++||++||||+||+.||++++...+        .++||++|++|+|+||.+|++++|+|+|+|||||
T Consensus       180 ~~I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~--------~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfr  248 (444)
T PRK08972        180 GMMTRGT---TADVIVVGLVGERGREVKEFIEEILGEE--------GRARSVVVAAPADTSPLMRLKGCETATTIAEYFR  248 (444)
T ss_pred             HHhccCC---CCCEEEEEEEcCChHHHHHHHHHhhccC--------CcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence            8776532   4589999999999999999999875554        4679999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEechhHHHhhhccc
Q 018957          324 DAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       324 d~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      | +|+||||+||||||||+|++||
T Consensus       249 d-~G~~VLl~~DslTR~A~A~REI  271 (444)
T PRK08972        249 D-QGLNVLLLMDSLTRYAQAQREI  271 (444)
T ss_pred             H-cCCCEEEEEcChHHHHHHHHHH
Confidence            9 8999999999999999999997

>PRK07165 F0F1 ATP synthase subunit alpha; Validated

Probab=100.00  E-value=2.2e-61  Score=490.65  Aligned_cols=243  Identities=16%  Similarity=0.235  Sum_probs=214.8

Q ss_pred             eEEEEECCEEEEEeCCCChhhh-hceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCccc
Q 018957           89 QVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVT  167 (348)
Q Consensus        89 ~V~~V~G~vV~v~f~~glp~i~-~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~l  167 (348)
                      +|++|.|.++++.   |++++. +++..+..+.....+|+ .++++.+.+++|+++.||+.|+.|.+||++++||||++|
T Consensus         4 ~V~~v~~~i~~v~---Gl~~~~~ge~~~~~~~~~~~g~V~-~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~l   79 (507)
T PRK07165          4 KIKSIFDYIVEVK---GEYDYQQNQFFTLKNNPNVKAFVI-SATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEY   79 (507)
T ss_pred             EEEEEeceEEEEE---cccCCCcCCEEEECCCCeEEEEEE-EEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccc
Confidence            7899999999997   884443 33333322222444554 567788999999999999999999999999999999999


Q ss_pred             cccEEeeeCcccccCCCCcc-----cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHH
Q 018957          168 LGRIMNVIGEPIDEKGDLKT-----EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL  242 (348)
Q Consensus       168 LGRViD~lG~PiD~~g~i~~-----~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L  242 (348)
                      ||||+|++|+|||+++++..     ...+|++++||+|++|.++++||+||||+||+|+|||||||++||||+|+|||+|
T Consensus        80 LGRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~l  159 (507)
T PRK07165         80 FGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHI  159 (507)
T ss_pred             cCCEECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHH
Confidence            99999999999999987755     4577999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 018957          243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF  322 (348)
Q Consensus       243 ~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyf  322 (348)
                      +.++|.||+. ++.+|||++||||+||+.+|+++|++.++        ++||++|++++| ||.+|+++||+|||+||||
T Consensus       160 al~~I~~q~~-~dv~~V~~~IGer~~ev~~~~~~l~~~ga--------l~~tvvV~atsd-~~~~r~~ap~~a~tiAEyf  229 (507)
T PRK07165        160 ALNTIINQKN-TNVKCIYVAIGQKRENLSRIYETLKEHDA--------LKNTIIIDAPST-SPYEQYLAPYVAMAHAENI  229 (507)
T ss_pred             HHHHHHHhcC-CCeEEEEEEccCChHHHHHHHHHhhhcCc--------eeeeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence            8777878753 33468999999999999999999999885        469999999985 9999999999999999999


Q ss_pred             hhcCCCcEEEEEechhHHHhhhccc
Q 018957          323 RDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       323 rd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      || + +|||++||||||||+|++||
T Consensus       230 rd-~-~dVLlv~DdLTr~A~A~REi  252 (507)
T PRK07165        230 SY-N-DDVLIVFDDLTKHANIYREI  252 (507)
T ss_pred             Hh-c-CceEEEEcChHHHHHHHHHH
Confidence            99 7 99999999999999999996

>PRK06936 type III secretion system ATPase; Provisional

Probab=100.00  E-value=3e-61  Score=484.53  Aligned_cols=248  Identities=27%  Similarity=0.418  Sum_probs=220.0

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhceEEee-c-Cc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT  160 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~-~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~  160 (348)
                      ...+|+|++|.|.++++.   +....+++++.+. . .. .+..||+.+.++..+ +++|++++||+.|++|.+||++++
T Consensus        21 ~~~~G~V~~v~g~~v~~~---~~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~-l~~~~~~~gi~~g~~V~~tg~~~~   96 (439)
T PRK06936         21 IQIRGRVTQVTGTILKAV---VPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQAL-LTPLGEMYGISSNTEVSPTGTMHQ   96 (439)
T ss_pred             cceeeEEEEEECcEEEEE---eCCCCCCCEEEEecCCCCcceEEEEEEEECCeEE-EEecCCCCCCCCCCEEEeCCCceE
Confidence            455799999999999986   3334444544432 2 22 478899999777655 999999999999999999999999


Q ss_pred             ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957          161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (348)
Q Consensus       161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT  240 (348)
                      ||||++|||||+|++|+|||+++++....++|++++||||++|.++++||+|||++||.|+|+++|||++|||++|+|||
T Consensus        97 v~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKS  176 (439)
T PRK06936         97 VGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKS  176 (439)
T ss_pred             EEeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChH
Confidence            99999999999999999999998887777889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957          241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE  320 (348)
Q Consensus       241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE  320 (348)
                      ||+.+++++.   +.+++||++||||+||++||+++....        +.++||++|++|+|+||.+|++++|+|+|+||
T Consensus       177 tLl~~Ia~~~---~~dv~V~~liGERgrEv~ef~~~~l~~--------~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAE  245 (439)
T PRK06936        177 TLLASLIRSA---EVDVTVLALIGERGREVREFIESDLGE--------EGLRKAVLVVATSDRPSMERAKAGFVATSIAE  245 (439)
T ss_pred             HHHHHHhcCC---CCCEEEEEEEccCcHHHHHHHHHHhcc--------cccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            9998777653   458999999999999999988664322        24689999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          321 HFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       321 yfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||| +||||||++||+||||+|++||
T Consensus       246 yfrd-~G~~Vll~~DslTR~A~A~REi  271 (439)
T PRK06936        246 YFRD-QGKRVLLLMDSVTRFARAQREI  271 (439)
T ss_pred             HHHH-cCCCEEEeccchhHHHHHHHHH
Confidence            9999 8999999999999999999996

>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=6.1e-61  Score=474.95  Aligned_cols=249  Identities=27%  Similarity=0.447  Sum_probs=237.4

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV  163 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV  163 (348)
                      ..+.|+|++|.+.|+.|.   ||.+++ ..|+++++ ..+.+++++++++.|.++++++...|+.|++|+.||+.+.|||
T Consensus        25 ~~~~g~V~sv~DgIa~v~---Gl~~~~-~~E~~ef~-~~v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpv   99 (504)
T COG0056          25 VKEVGTVISVGDGIARVS---GLENVM-AGELVEFP-GGVKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPV   99 (504)
T ss_pred             hhccceEEEEecceEEEe---cCchhh-cCceEEec-CCcEEEEEeccccceeEEEecCCccccCCcEEEeeCceEEEec
Confidence            346799999999999997   999998 57888876 5689999999999999999999999999999999999999999


Q ss_pred             CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957          164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI  243 (348)
Q Consensus       164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~  243 (348)
                      |++++|||+|++|+|+|+++++......|++..+|+.++|.+++|||+||||+||+|+|||||||.+|+|++++|||+++
T Consensus       100 g~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIA  179 (504)
T COG0056         100 GEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIA  179 (504)
T ss_pred             chhhcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957          244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR  323 (348)
Q Consensus       244 ~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr  323 (348)
                      .++|.||. ..+.+||||+||++.+.+..+++.|+++|+        |++|+||+++++||+.++|++||+|||+|||||
T Consensus       180 idtIiNQk-~~~v~CIYVAIGQK~stva~vv~tL~e~gA--------mdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~  250 (504)
T COG0056         180 IDTIINQK-GSGVKCIYVAIGQKRSTVANVVRTLEEHGA--------MDYTIVVAASASDSAPLQYLAPYAGCAMAEYFR  250 (504)
T ss_pred             HHHHHhcc-cCCcEEEEEEcccchHHHHHHHHHHHHcCC--------ccceEEEEecCCcchhhhhhhhhhhhHHHHHHH
Confidence            99999994 456789999999999999999999999984        579999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEechhHHHhhhccc
Q 018957          324 DAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       324 d~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      | +|+|||++|||+|+||.|+|++
T Consensus       251 ~-~G~dvLIVyDDLsKhA~AYRei  273 (504)
T COG0056         251 D-NGKDVLIVYDDLSKHAVAYREI  273 (504)
T ss_pred             h-cCCeEEEEecCchHHHHHHHHH
Confidence            9 8999999999999999999986

>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B

Probab=100.00  E-value=1.5e-59  Score=447.64  Aligned_cols=182  Identities=25%  Similarity=0.394  Sum_probs=169.6

Q ss_pred             CceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCC
Q 018957          158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV  237 (348)
Q Consensus       158 ~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~Gv  237 (348)
                      +++||||++|||||+|++|+|||+++++...+++|+++++|++++|.+++|||+||||+||+|+||+||||+||||++|+
T Consensus         1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv   80 (276)
T cd01135           1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL   80 (276)
T ss_pred             CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence            47899999999999999999999998887777899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHH---hhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHH
Q 018957          238 GKTVLIMELINNVA---KAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLT  314 (348)
Q Consensus       238 GKT~L~~~ii~n~a---~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~  314 (348)
                      |||+|+.+|++|..   +.+.++|||++||||+||+.+|+++|.+.++        ++||++|++|+|+||++|++++|+
T Consensus        81 GKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~--------l~~tv~v~~t~~~~~~~r~~a~~~  152 (276)
T cd01135          81 PHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGA--------LERVVLFLNLANDPTIERIITPRM  152 (276)
T ss_pred             ChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCC--------cceEEEEEecCCCCHHHHHHHHHH
Confidence            99999999776532   1235899999999999999999999998874        469999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          315 GLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       315 a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+|+||||||++|+|||++|||+||||+|++||
T Consensus       153 a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi  185 (276)
T cd01135         153 ALTTAEYLAYEKGKHVLVILTDMTNYAEALREI  185 (276)
T ss_pred             HHHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence            999999999944999999999999999999997

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.

>PRK05922 type III secretion system ATPase; Validated

Probab=100.00  E-value=2.1e-58  Score=463.80  Aligned_cols=247  Identities=25%  Similarity=0.429  Sum_probs=221.8

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEee-c-CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP  162 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~-~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp  162 (348)
                      ..+|+|++|.|++++++   |+...+++++.+. . +....+||+.+ .++.+.+++|+++.||+.|+.|..++++++||
T Consensus        18 ~~~g~v~~v~g~~i~~~---g~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~   93 (434)
T PRK05922         18 RECGLLSRVSGNLLEAQ---GLSACLGELCQISLSKSPPILAEVIGF-HNRTTLLMSLSPIHYVALGAEVLPLRRPPSLH   93 (434)
T ss_pred             eeeeEEEEEEccEEEEE---eCCCCCCCEEEEecCCCCeeEEEEEEE-eCCeEEEEEccCCCCCCCCCEEEeCCCCcEEE
Confidence            36799999999999997   6665556655443 1 23477899987 55567799999999999999999999999999


Q ss_pred             CCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHH
Q 018957          163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL  242 (348)
Q Consensus       163 VG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L  242 (348)
                      +|++|||||+|++|+|||+++++....++|++.+||+|++|.+++++|+||||+||.|+|+++|||++|||++|+|||+|
T Consensus        94 vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTL  173 (434)
T PRK05922         94 LSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSL  173 (434)
T ss_pred             cChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHHH
Confidence            99999999999999999999887766778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 018957          243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF  322 (348)
Q Consensus       243 ~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyf  322 (348)
                      +.+++++   .+.+++||++||||++|+.++++++.+..        .+++|++|++|+|+||.+|++++|+|+|+||||
T Consensus       174 L~~Ia~~---~~~d~gvi~liGerg~ev~eyl~q~~~~~--------~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyf  242 (434)
T PRK05922        174 LSTIAKG---SKSTINVIALIGERGREVREYIEQHKEGL--------AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYF  242 (434)
T ss_pred             HHHHhcc---CCCCceEEEEeCCCCchHHHHHHHHHhhc--------cccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence            8766643   24588999999999999999998887654        246899999999999999999999999999999


Q ss_pred             hhcCCCcEEEEEechhHHHhhhccc
Q 018957          323 RDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       323 rd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      || +|+||||++|||||||+|++||
T Consensus       243 rd-~G~~VLl~~DslTR~A~A~REi  266 (434)
T PRK05922        243 RD-QGHRVLFIMDSLSRWIAALQEV  266 (434)
T ss_pred             HH-cCCCEEEeccchhHHHHHHHHH
Confidence            99 7999999999999999999997

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=100.00  E-value=6.2e-58  Score=459.00  Aligned_cols=244  Identities=27%  Similarity=0.463  Sum_probs=219.8

Q ss_pred             eeEEEEECCEEEEEeCCCChhhhhceEEee--cCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957           88 GQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR  165 (348)
Q Consensus        88 G~V~~V~G~vV~v~f~~glp~i~~~lev~~--~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~  165 (348)
                      |+|++|.|+++++++.   ...++++..+.  .+.....||+.+ .++.+.+++|+++.||++|+.|..||++++||+|+
T Consensus         1 G~v~~v~g~~v~v~g~---~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~   76 (411)
T TIGR03496         1 GRVTRVVGLVLEAVGL---RAPVGSRCEIESSDGDPIEAEVVGF-RGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGD   76 (411)
T ss_pred             CEEEEEECcEEEEEeC---CCCcCCEEEEEcCCCCeEEEEEEEe-cCCEEEEEEccCccCCCCCCEEEECCCccEEEcch
Confidence            7999999999999844   33334543333  222468899987 67789999999999999999999999999999999


Q ss_pred             cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957          166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME  245 (348)
Q Consensus       166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~  245 (348)
                      +|||||+|++|+|||+.+++....+||++++||||++|..+++++.||+++||.++|+++|||++|||++|+|||+|+..
T Consensus        77 ~llGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~  156 (411)
T TIGR03496        77 SLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGM  156 (411)
T ss_pred             hhcCCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHH
Confidence            99999999999999999888777889999999999999999999999999999999999999999999999999999876


Q ss_pred             HHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhc
Q 018957          246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA  325 (348)
Q Consensus       246 ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~  325 (348)
                      ++++.   +.++.||++||||++|+.+|++++.+.++        ++||++|++|+|+||.+|++++|+|+|+|||||| 
T Consensus       157 I~~~~---~~~~~vi~~iGer~~ev~e~~~~~~~~~~--------~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~-  224 (411)
T TIGR03496       157 MARYT---EADVVVVGLIGERGREVKEFIEDILGEEG--------LARSVVVAATADESPLMRLRAAFYATAIAEYFRD-  224 (411)
T ss_pred             HhcCC---CCCEEEEEEEecChHHHHHHHHHHhhCCC--------cceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence            65432   34788999999999999999999988774        4799999999999999999999999999999999 


Q ss_pred             CCCcEEEEEechhHHHhhhccc
Q 018957          326 EGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       326 ~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|+||||+||||||||+|+|||
T Consensus       225 ~G~~Vll~~Dsltr~A~A~REi  246 (411)
T TIGR03496       225 QGKDVLLLMDSLTRFAMAQREI  246 (411)
T ss_pred             CCCCEEEEEeChHHHHHHHHHH
Confidence            7999999999999999999996

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=100.00  E-value=6.4e-58  Score=459.12  Aligned_cols=245  Identities=29%  Similarity=0.510  Sum_probs=217.1

Q ss_pred             eeEEEEECCEEEEEeCCCChhhhhceEEee-cCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCcc
Q 018957           88 GQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV  166 (348)
Q Consensus        88 G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~  166 (348)
                      |+|++|.|++++++++.  +.+...+++.. .+....+||+++. ++.+.+++|+++.||++|+.|..||++++||+|++
T Consensus         1 G~V~~i~G~~i~v~~~~--~~ige~~~i~~~~~~~~~~eVi~~~-~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~   77 (413)
T TIGR03497         1 GKVTRVIGLTIESKGPK--AKIGELCSILTKGGKPVLAEVVGFK-EENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKG   77 (413)
T ss_pred             CeEEEEECCEEEEEeCC--CCcCCEEEEEeCCCCeEEEEEEEEc-CCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchh
Confidence            79999999999998641  33333244431 2345789999997 55688999999999999999999999999999999


Q ss_pred             ccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          167 TLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       167 lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      |||||+|++|+|||+++++....+||+++.||+|++|..+++++.||+|+||.|+|+++|||++|||++|+|||+|+.++
T Consensus        78 lLGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i  157 (413)
T TIGR03497        78 LLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMI  157 (413)
T ss_pred             hcCCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            99999999999999998887777899999999999999999999999999999999999999999999999999998766


Q ss_pred             HHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcC
Q 018957          247 INNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE  326 (348)
Q Consensus       247 i~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~  326 (348)
                      +++ .  +.+..||+++|||++|+.+++++..+.        +.++|+++|++|+|+||.+|++++|+|+|+|||||| +
T Consensus       158 ~~~-~--~~~~gvi~~~Ger~~ev~e~~~~~l~~--------~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr~-~  225 (413)
T TIGR03497       158 ARN-A--KADINVIALIGERGREVRDFIEKDLGE--------EGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRD-Q  225 (413)
T ss_pred             hCC-C--CCCeEEEEEEccchHHHHHHHHHHhcc--------cccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-C
Confidence            543 2  458889999999999999988774332        245799999999999999999999999999999999 7


Q ss_pred             CCcEEEEEechhHHHhhhccc
Q 018957          327 GQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       327 G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+||||++|||||||+|+|||
T Consensus       226 G~~Vll~~Dsltr~A~A~rEi  246 (413)
T TIGR03497       226 GKDVLLMMDSVTRFAMAQREI  246 (413)
T ss_pred             CCCEEEEEcCcHHHHHHHHHH
Confidence            999999999999999999996

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=1e-57  Score=460.39  Aligned_cols=247  Identities=26%  Similarity=0.444  Sum_probs=223.8

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEeec-Cc----eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCc
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI  159 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~~----~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l  159 (348)
                      ..+|+|++|.|.++++.   |++.-+++++.+.. +.    ....||+++ +++.+.+++|+++.||+.|+.|+.||+++
T Consensus        26 ~~~g~v~~v~g~~~~~~---g~~~~~ge~c~i~~~~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~V~~tg~~~  101 (451)
T PRK05688         26 VVEGRLLRMVGLTLEAE---GLRAAVGSRCLVINDDSYHPVQVEAEVMGF-SGDKVFLMPVGSVAGIAPGARVVPLADTG  101 (451)
T ss_pred             ceeeEEEEEEecEEEEe---cCCCCCCCEEEEecCCCccccceEEEEEEE-cCCEEEEEEccCccCCCCCCEEEECCCcc
Confidence            44699999999999997   66555566555432 22    478899997 77778899999999999999999999999


Q ss_pred             eecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcH
Q 018957          160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK  239 (348)
Q Consensus       160 ~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGK  239 (348)
                      +||||++|||||+|++|+|||+++++....++|++.+||||++|.++++||+|||++||.|+|+++|||++|||++|+||
T Consensus       102 ~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~GK  181 (451)
T PRK05688        102 RLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGK  181 (451)
T ss_pred             EEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCCCH
Confidence            99999999999999999999999888777788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHH
Q 018957          240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA  319 (348)
Q Consensus       240 T~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiA  319 (348)
                      |+|+.++..+   .+.+++||++||+|++|+.++++++...+        .++|+++|++|+|+||.+|++++|+|+|+|
T Consensus       182 STLl~~I~g~---~~~dv~V~g~Ig~rg~ev~~~~~~~~~~~--------~l~rsvvv~atsd~~p~~r~~a~~~a~aiA  250 (451)
T PRK05688        182 SVLLGMMTRF---TEADIIVVGLIGERGREVKEFIEHILGEE--------GLKRSVVVASPADDAPLMRLRAAMYCTRIA  250 (451)
T ss_pred             HHHHHHHhCC---CCCCEEEEEEeCcCcHhHHHHHHHHhhcC--------CccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence            9999766543   24578899999999999999999998776        357999999999999999999999999999


Q ss_pred             HHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          320 EHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       320 Eyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||||| +|+||||+||||||||+|++||
T Consensus       251 Eyfrd-~G~~VLl~~DslTR~A~A~REi  277 (451)
T PRK05688        251 EYFRD-KGKNVLLLMDSLTRFAQAQREI  277 (451)
T ss_pred             HHHHH-CCCCEEEEecchhHHHHHHHHH
Confidence            99999 8999999999999999999997

>PRK09099 type III secretion system ATPase; Provisional

Probab=100.00  E-value=1.1e-57  Score=459.92  Aligned_cols=248  Identities=30%  Similarity=0.491  Sum_probs=222.0

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhceEEee--cCc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT  160 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~--~~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~  160 (348)
                      ...+|+|++|.|++++++   |+...++++..+.  .+. ....||+.+. ++.+.+++|+++.||+.|++|.+||++++
T Consensus        22 ~~~~G~V~~v~g~~i~~~---g~~~~~ge~~~i~~~~g~~~~~~eVv~~~-~~~~~l~~~~~t~gi~~g~~V~~tg~~~~   97 (441)
T PRK09099         22 VRRTGKVVEVIGTLLRVS---GLDVTLGELCELRQRDGTLLQRAEVVGFS-RDVALLSPFGELGGLSRGTRVIGLGRPLS   97 (441)
T ss_pred             ceEeeEEEEEECCEEEEe---ccCCCCCCEEEEecCCCCeeeEEEEEEEE-CCEEEEEEccCCcCCCCCCEEEeCCCccE
Confidence            345799999999999997   6655555554442  122 2678999875 45677999999999999999999999999


Q ss_pred             ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957          161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (348)
Q Consensus       161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT  240 (348)
                      ||||++|||||+|++|+|||+++++....++|++..||||++|.++++||+||+++||.|+|+++|||++|||++|+|||
T Consensus        98 v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKT  177 (441)
T PRK09099         98 VPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKS  177 (441)
T ss_pred             EEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCHH
Confidence            99999999999999999999998887777899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957          241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE  320 (348)
Q Consensus       241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE  320 (348)
                      +|+.+++.+.   +.+.+||++||||+||+.+|++++.+.+        .++|+++|++|+|+||.+|++++|+|+|+||
T Consensus       178 tLl~~ia~~~---~~d~~vi~~iGer~~ev~ef~~~~~~~~--------~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAE  246 (441)
T PRK09099        178 TLMGMFARGT---QCDVNVIALIGERGREVREFIELILGED--------GMARSVVVCATSDRSSIERAKAAYVATAIAE  246 (441)
T ss_pred             HHHHHHhCCC---CCCeEEEEEEccChHHHHHHHHHHhhcC--------CcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            9998776543   3478999999999999999999987665        4579999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          321 HFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       321 yfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||| +||||||++||+||||+|++||
T Consensus       247 yfrd-~G~~VLl~~DslTr~A~A~REi  272 (441)
T PRK09099        247 YFRD-RGLRVLLMMDSLTRFARAQREI  272 (441)
T ss_pred             HHHH-cCCCEEEeccchhHHHHHHHHH
Confidence            9999 7999999999999999999996

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=100.00  E-value=2.2e-58  Score=439.91  Aligned_cols=182  Identities=80%  Similarity=1.229  Sum_probs=173.8

Q ss_pred             CceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCC
Q 018957          158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV  237 (348)
Q Consensus       158 ~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~Gv  237 (348)
                      +++||||++|||||+|++|+|||+++++...++|||++++||+++|.+++++|+||||+||+|+|||||||++|||++|+
T Consensus         1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~   80 (274)
T cd01133           1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV   80 (274)
T ss_pred             CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence            57899999999999999999999998887778899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHH
Q 018957          238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT  317 (348)
Q Consensus       238 GKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~t  317 (348)
                      |||+|++++++|+++++.++|||++||||+||+++|+++|.+.++        ++||++|++|+|+||.+|++++|+|+|
T Consensus        81 GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~--------~~~tvvv~~t~d~~~~~r~~~~~~a~~  152 (274)
T cd01133          81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGV--------LSKTALVYGQMNEPPGARARVALTGLT  152 (274)
T ss_pred             ChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCC--------cceeEEEEECCCCCHHHHHHHHHHHHH
Confidence            999999999999977778899999999999999999999998874        479999999999999999999999999


Q ss_pred             HHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          318 VAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       318 iAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +||||||++|+||||++|||||||+|+||+
T Consensus       153 ~AEyfr~~~g~~Vl~~~Dsltr~a~A~rei  182 (274)
T cd01133         153 MAEYFRDEEGQDVLLFIDNIFRFTQAGSEV  182 (274)
T ss_pred             HHHHHHHhcCCeEEEEEeChhHHHHHHHHH
Confidence            999999944999999999999999999996

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=100.00  E-value=3.1e-57  Score=454.39  Aligned_cols=244  Identities=32%  Similarity=0.513  Sum_probs=215.9

Q ss_pred             eeEEEEECCEEEEEeCCCChh--hhhceEEeec--CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957           88 GQVCQVIGAVVDVRFDEGLPP--ILTALEVVDH--SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV  163 (348)
Q Consensus        88 G~V~~V~G~vV~v~f~~glp~--i~~~lev~~~--~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV  163 (348)
                      |+|++|.|++++++   |+..  .++++..+..  +.....||+.+ +++.+.+++|++++||++|+.|..|+++++|||
T Consensus         1 G~v~~v~g~~~~v~---g~~~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~v   76 (418)
T TIGR03498         1 GRVTAVTGLLIEVR---GLSRAVRLGDRCAIRARDGRPVLAEVVGF-NGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRP   76 (418)
T ss_pred             CEEEEEECcEEEEE---cCCCccCCCCEEEEEcCCCCEEEEEEEEE-cCCeEEEEEccCCcCCCCCCEEEECCCccEEEe
Confidence            79999999999997   6554  3445444432  22467899986 667788999999999999999999999999999


Q ss_pred             CccccccEEeeeCcccccCCCCccc-ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHH
Q 018957          164 GRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL  242 (348)
Q Consensus       164 G~~lLGRViD~lG~PiD~~g~i~~~-~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L  242 (348)
                      |++|||||+|++|+|||+++++... .+||+++.||+|++|.++++||+||+++||.++|+++|||++|||++|+|||+|
T Consensus        77 g~~lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtL  156 (418)
T TIGR03498        77 HPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTL  156 (418)
T ss_pred             ChhhcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHH
Confidence            9999999999999999999887555 468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 018957          243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF  322 (348)
Q Consensus       243 ~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyf  322 (348)
                      +..++.+.   +.+..+|+++|||+||+.+|++++...+        .++||++|++|+|+||.+|+++||+|+|+||||
T Consensus       157 l~~I~~~~---~~~~gvi~~iGer~~ev~~~~~~~l~~~--------~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyf  225 (418)
T TIGR03498       157 LSMLARNT---DADVVVIALVGERGREVREFLEDDLGEE--------GLKRSVVVVATSDESPLMRRQAAYTATAIAEYF  225 (418)
T ss_pred             HHHHhCCC---CCCEEEEEEEeeechHHHHHHHHhhhcc--------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence            97555432   3578899999999999999888754433        467999999999999999999999999999999


Q ss_pred             hhcCCCcEEEEEechhHHHhhhccc
Q 018957          323 RDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       323 rd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      || +|+||||+||||||||+|++|+
T Consensus       226 rd-~G~~Vll~~DslTr~A~A~REi  249 (418)
T TIGR03498       226 RD-QGKDVLLLMDSVTRFAMAQREI  249 (418)
T ss_pred             HH-cCCCEEEeccchhHHHHHHHHH
Confidence            99 8999999999999999999986

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK06820 type III secretion system ATPase; Validated

Probab=100.00  E-value=8.3e-57  Score=453.11  Aligned_cols=244  Identities=27%  Similarity=0.386  Sum_probs=217.8

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR  165 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~  165 (348)
                      .+|+|++|.|.++.+.   +....++++..++.+ +...||+.+.++ .+.+++|+++.||++|++|..||++++||||+
T Consensus        29 ~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~~-~~~~eVv~~~~~-~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~  103 (440)
T PRK06820         29 YRGPIVEIGPTLLRAS---LPGVAQGELCRIEPQ-GMLAEVVSIEQE-MALLSPFASSDGLRCGQWVTPLGHMHQVQVGA  103 (440)
T ss_pred             EeeEEEEEECcEEEEE---ECCCCcCCEEEEecC-CeEEEEEEEeCC-eEEEEEccCccCCCCCCEEEECCCCcEEEech
Confidence            4699999999999986   333444555444332 478899988655 57899999999999999999999999999999


Q ss_pred             cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957          166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME  245 (348)
Q Consensus       166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~  245 (348)
                      +|||||+|++|+|||+++++ ...++|+++.+|||++|.+++++++||||+||.|+|+++|||++|||++|+|||+|+.+
T Consensus       104 ~llGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKStLl~~  182 (440)
T PRK06820        104 DLAGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGM  182 (440)
T ss_pred             hhcCCEECccCCccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCCCCChHHHHHH
Confidence            99999999999999998866 45678999999999999999999999999999999999999999999999999999975


Q ss_pred             HHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhc
Q 018957          246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA  325 (348)
Q Consensus       246 ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~  325 (348)
                      ++. +  .+.+++||++||||++|+.++++++...+        .+.|+++|++++|+||.+|++++|+|+|+|||||| 
T Consensus       183 I~~-~--~~~dv~V~~~iGergrEv~ef~e~~l~~~--------~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEyfrd-  250 (440)
T PRK06820        183 LCA-D--SAADVMVLALIGERGREVREFLEQVLTPE--------ARARTVVVVATSDRPALERLKGLSTATTIAEYFRD-  250 (440)
T ss_pred             Hhc-c--CCCCEEEEEEEccChHHHHHHHHHhhccC--------CceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence            554 3  25689999999999999999998887665        34799999999999999999999999999999999 


Q ss_pred             CCCcEEEEEechhHHHhhhccc
Q 018957          326 EGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       326 ~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|+||||+|||+||||+|++||
T Consensus       251 ~G~~VLl~~Dsltr~A~A~REi  272 (440)
T PRK06820        251 RGKKVLLMADSLTRYARAAREI  272 (440)
T ss_pred             cCCCEEEEccchhHHHHHHHHH
Confidence            8999999999999999999997

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=5e-57  Score=454.68  Aligned_cols=248  Identities=25%  Similarity=0.415  Sum_probs=221.3

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhceEEeec-Cc----eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEec---
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNT---  155 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~~----~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~t---  155 (348)
                      ...+|+|++|.|.++++.   |+....++++.+.. +.    .+.+||+.+ .++.+.+++|++++||..|+.|.++   
T Consensus        25 ~~~~G~v~~v~g~~v~~~---g~~~~iG~~c~i~~~~~~~~~~~~~eVvg~-~~~~~~l~~~~~~~gi~~g~~v~~~~~~  100 (455)
T PRK07960         25 VRRYGRLTRATGLVLEAT---GLQLPLGATCVIERQNGSETHEVESEVVGF-NGQRLFLMPLEEVEGILPGARVYARNIS  100 (455)
T ss_pred             cccccEEEEEEEEEEEEe---CCCCCCCCEEEEEeCCCccccceeeeEEEe-cCCEEEEEECCCccCCCCCCEEEECCcc
Confidence            345799999999999987   66555566555422 22    367899998 4556779999999999999999999   


Q ss_pred             ----CCCceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEe
Q 018957          156 ----GSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL  231 (348)
Q Consensus       156 ----g~~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gI  231 (348)
                          |++++||||++|||||+|++|+|||+++++....++|++++||||++|.++++|++||||+||+|+|+++|||++|
T Consensus       101 ~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~I  180 (455)
T PRK07960        101 GEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGL  180 (455)
T ss_pred             cccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcEEEE
Confidence                9999999999999999999999999998887667789999999999999999999999999999999999999999


Q ss_pred             ecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHH
Q 018957          232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARV  311 (348)
Q Consensus       232 fg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a  311 (348)
                      ||++|+|||+|+..++.+   .+.+++|+++||||++|+.++++++.+.+        .+++++||++++|+||.+|+++
T Consensus       181 ~G~sG~GKTTLL~~Ia~~---~~~d~iv~g~Igerg~ev~e~~~~~~~~~--------~~~~tvVv~~~ad~~~~~r~~~  249 (455)
T PRK07960        181 FAGSGVGKSVLLGMMARY---TQADVIVVGLIGERGREVKDFIENILGAE--------GRARSVVIAAPADVSPLLRMQG  249 (455)
T ss_pred             ECCCCCCccHHHHHHhCC---CCCCEEEEEEEEECCeEHHHHHHhhcCcC--------CCceEEEEEECCCCCHHHHHHH
Confidence            999999999999766643   24578899999999999999988876554        4679999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          312 GLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       312 ~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|+|+|+|||||| +|||||+++|||||||+|++||
T Consensus       250 ~~~a~tiAEyfrd-~G~~Vll~~DslTr~A~A~rEi  284 (455)
T PRK07960        250 AAYATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREI  284 (455)
T ss_pred             HHHHHHHHHHHHH-cCCCeEEEecchhHHHHHHHHH
Confidence            9999999999999 8999999999999999999997

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain

Probab=100.00  E-value=4.2e-57  Score=430.66  Aligned_cols=179  Identities=26%  Similarity=0.473  Sum_probs=167.5

Q ss_pred             ceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCc
Q 018957          159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG  238 (348)
Q Consensus       159 l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvG  238 (348)
                      ++||||++|||||+|++|+|||+++++...++||++.++|++++|..+++||+||||+||+|+||+||||++|||++|+|
T Consensus         2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G   81 (274)
T cd01132           2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG   81 (274)
T ss_pred             eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence            68999999999999999999999988877788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957          239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV  318 (348)
Q Consensus       239 KT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ti  318 (348)
                      ||+|+.++|.|+++ ++.+|||++||||+||+.||+++|++.++        ++||++|++|+|+||.+|++++|+|||+
T Consensus        82 Kt~L~l~~i~~~~~-~~v~~V~~~iGer~~ev~e~~~~~~~~~~--------~~~tvvv~~t~d~~~~~r~~a~~~a~ai  152 (274)
T cd01132          82 KTAIAIDTIINQKG-KKVYCIYVAIGQKASTVAQVVKTLEEHGA--------MEYTIVVAATASDPAPLQYLAPYTGCAM  152 (274)
T ss_pred             ccHHHHHHHHHhcC-CCeEEEEEecccchHHHHHHHHHHHhcCc--------cceeEEEEeCCCCchhHHHHHHHHHHHH
Confidence            99997667766642 34567999999999999999999999874        4699999999999999999999999999


Q ss_pred             HHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          319 AEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       319 AEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||||| +||||||+||||||||+|++|+
T Consensus       153 AE~fr~-~G~~Vlvl~DslTr~A~A~rEi  180 (274)
T cd01132         153 GEYFMD-NGKHALIIYDDLSKQAVAYRQM  180 (274)
T ss_pred             HHHHHH-CCCCEEEEEcChHHHHHHHHHH
Confidence            999999 7999999999999999999996

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=100.00  E-value=8.8e-56  Score=444.94  Aligned_cols=244  Identities=25%  Similarity=0.404  Sum_probs=217.5

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR  165 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~  165 (348)
                      .+|+|++|.|.++++.   +....++++..+.. .+...||+.+.+++ +.+++|+++.||+.|++|.+||++++||||+
T Consensus        21 ~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~-~~~~~eVv~~~~~~-~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~   95 (433)
T PRK07594         21 RWGRIQDVSATLLNAW---LPGVFMGELCCIKP-GEELAEVVGINGSK-ALLSPFTSTIGLHCGQQVMALRRRHQVPVGE   95 (433)
T ss_pred             eeeEEEEEECCEEEEE---ECCcCCCCEEEEec-CCeEEEEEEEcCCe-EEEEEccCCcCCCCCCEEEeCCCccEEEeCh
Confidence            4699999999999986   44444555554432 34788999986665 5599999999999999999999999999999


Q ss_pred             cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957          166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME  245 (348)
Q Consensus       166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~  245 (348)
                      +|||||+|++|+|||++++. ...++|++..+|||++|..+++++.||+++||.|+|+++|||++|||++|+|||+|+..
T Consensus        96 ~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~  174 (433)
T PRK07594         96 ALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM  174 (433)
T ss_pred             hhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCccHHHHH
Confidence            99999999999999998774 45678999999999999999999999999999999999999999999999999999976


Q ss_pred             HHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhc
Q 018957          246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA  325 (348)
Q Consensus       246 ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~  325 (348)
                      ++++ .  +.+.+||+++|||++|+.++++++.+.+        .++|+++|++++|+|+.+|++++|+|+|+|||||| 
T Consensus       175 I~~~-~--~~d~~vi~~iGeRgrEv~efl~~~~~~~--------~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd-  242 (433)
T PRK07594        175 LCNA-P--DADSNVLVLIGERGREVREFIDFTLSEE--------TRKRCVIVVATSDRPALERVRALFVATTIAEFFRD-  242 (433)
T ss_pred             hcCC-C--CCCEEEEEEECCCchHHHHHHHHhhccC--------CcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence            6543 2  4578999999999999999998876654        45799999999999999999999999999999999 


Q ss_pred             CCCcEEEEEechhHHHhhhccc
Q 018957          326 EGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       326 ~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +||||||+|||+||||+|++||
T Consensus       243 ~G~~VLl~~Dsltr~A~A~REi  264 (433)
T PRK07594        243 NGKRVVLLADSLTRYARAAREI  264 (433)
T ss_pred             CCCcEEEEEeCHHHHHHHHHHH
Confidence            7999999999999999999997

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=100.00  E-value=1.2e-55  Score=445.68  Aligned_cols=248  Identities=29%  Similarity=0.451  Sum_probs=218.1

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEee--cCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP  162 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~--~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp  162 (348)
                      ..+|+|++|.|+++++.++  .+.+.+.+++..  .+..+.+||+++.+ +.+.+++|++++||++|++|.+||++++||
T Consensus        22 ~~~G~v~~i~G~~v~~~~~--~~~~ge~~~i~~~~~~~~~~~eVi~~~~-~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~   98 (440)
T TIGR01026        22 KRVGRVTKVKGLLIEAVGP--QASVGDLCLIERRGSEGRLVAEVVGFNG-EFVFLMPYEEVEGVRPGSKVLATGEGLSIK   98 (440)
T ss_pred             ceeeEEEEEEeeEEEEEcC--CCCcCCEEEEeecCCCCcEEEEEEEecC-CEEEEEEccCCcCCCCCCEEEeCCCccEEE
Confidence            4579999999999998753  233433234421  12337889999865 678899999999999999999999999999


Q ss_pred             CCccccccEEeeeCcccccCC-CCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957          163 VGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV  241 (348)
Q Consensus       163 VG~~lLGRViD~lG~PiD~~g-~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~  241 (348)
                      ||++|||||+|++|+|||+++ ++.....+|+++.||||++|.++++++.||+++||.++|+++|||++|||++|+|||+
T Consensus        99 vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKSt  178 (440)
T TIGR01026        99 VGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKST  178 (440)
T ss_pred             cChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCCHHH
Confidence            999999999999999999988 6655667899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957          242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH  321 (348)
Q Consensus       242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy  321 (348)
                      |+..++.+   .+.++.||+++|||++|+.++++++...+        .++||++|++++|+||.+|+++||+|+|+|||
T Consensus       179 Ll~~I~~~---~~~~~~vi~~iG~r~~ev~~~~~~~~~~~--------~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~  247 (440)
T TIGR01026       179 LLGMIARN---TEADVNVIALIGERGREVREFIEHDLGEE--------GLKRSVVVVATSDQSPLLRLKGAYVATAIAEY  247 (440)
T ss_pred             HHHHHhCC---CCCCEEEEEEEeecchHHHHHHHHHhccc--------ccceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            99766543   24578899999999999999888765443        46799999999999999999999999999999


Q ss_pred             hhhcCCCcEEEEEechhHHHhhhccc
Q 018957          322 FRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       322 frd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||| +|+||||++|||||||+|++||
T Consensus       248 frd-~G~~Vll~~DslTr~A~A~REi  272 (440)
T TIGR01026       248 FRD-QGKDVLLLMDSVTRFAMAQREI  272 (440)
T ss_pred             HHH-CCCCEEEEEeChHHHHHHHHHH
Confidence            999 7999999999999999999996

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK08149 ATP synthase SpaL; Validated

Probab=100.00  E-value=3.2e-55  Score=440.32  Aligned_cols=246  Identities=25%  Similarity=0.405  Sum_probs=215.5

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEeec---CceeE--EEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH---SVRLV--LEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT  160 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~---~~~~~--~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~  160 (348)
                      .+|+|++|.|++++++   +...-+++++.+..   +....  +||+.+ .++.+.+++|+++.||+.|++|..++++++
T Consensus         6 ~~g~v~~i~g~~i~~~---~~~~~~ge~~~i~~~~~~~~~~~~~evv~~-~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~   81 (428)
T PRK08149          6 RLAHPLRIQGPIIEAE---LPDVAIGEICEIRAGWHSNEVIARAQVVGF-QRERTILSLIGNAQGLSRQVVLKPTGKPLS   81 (428)
T ss_pred             eeeEEEEEEeeEEEEE---ECCCCcCCEEEEeecCCCCceeeEEEEEEe-eCcEEEEEECCCccCCCCCCEEEEcCCcCE
Confidence            4699999999999997   43344455443321   22333  678876 555677999999999999999999999999


Q ss_pred             ecCCccccccEEeeeCcccccCC--CCc--ccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCC
Q 018957          161 VPVGRVTLGRIMNVIGEPIDEKG--DLK--TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG  236 (348)
Q Consensus       161 VpVG~~lLGRViD~lG~PiD~~g--~i~--~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~G  236 (348)
                      ||+|++|||||+|++|+|||+++  +..  ...++|++++||||++|..+++||+||+++||.++|+++|||++|||++|
T Consensus        82 v~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~sG  161 (428)
T PRK08149         82 VWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAG  161 (428)
T ss_pred             EEeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCCC
Confidence            99999999999999999999886  332  24678999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957          237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL  316 (348)
Q Consensus       237 vGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~  316 (348)
                      +|||||+.+++++   .+.+++||++||+|++|+.++++++.+.+.        ++|+++|++|+|+||.+|++++|+|+
T Consensus       162 ~GKTTLl~~i~~~---~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~--------~~~~~vV~~~sd~p~~~r~~a~~~a~  230 (428)
T PRK08149        162 CGKTSLMNMLIEH---SEADVFVIGLIGERGREVTEFVESLRASSR--------REKCVLVYATSDFSSVDRCNAALVAT  230 (428)
T ss_pred             CChhHHHHHHhcC---CCCCeEEEEEEeeCCccHHHHHHHHhhccc--------ccceEEEEECCCCCHHHHHhHHHHHH
Confidence            9999999876653   245788999999999999999999987763        46999999999999999999999999


Q ss_pred             HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+|||||| +||||||++|||||||+|++||
T Consensus       231 tiAE~fr~-~G~~Vll~~DslTr~A~A~rEi  260 (428)
T PRK08149        231 TVAEYFRD-QGKRVVLFIDSMTRYARALRDV  260 (428)
T ss_pred             HHHHHHHH-cCCCEEEEccchHHHHHHHHHh
Confidence            99999999 7999999999999999999997

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=4.1e-55  Score=440.18  Aligned_cols=247  Identities=26%  Similarity=0.466  Sum_probs=218.8

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhceEEeec-C--ceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-S--VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT  160 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~--~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~  160 (348)
                      ...+|+|++|.|++++++   |+..-++++..+.. +  ....+||+.+ +++.+.+++|+++.||+.|++|..|+++++
T Consensus        16 ~~~~G~v~~v~g~~v~~~---g~~~~~ge~~~i~~~~~~~~~~~eVv~~-~~~~~~l~~~~~t~gl~~G~~V~~tg~~~~   91 (434)
T PRK08472         16 SPRFGSITKISPTIIEAD---GLNPSVGDIVKIESSDNGKECLGMVVVI-EKEQFGISPFSFIEGFKIGDKVFISKEGLN   91 (434)
T ss_pred             ceeeeEEEEEEccEEEEE---ecCCCCCCEEEEecCCCCCceEEEEEEE-eCCeEEEEEccCCCCCCCCCEEEeCCCceE
Confidence            345799999999999996   65555555444432 1  3477898877 566688999999999999999999999999


Q ss_pred             ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957          161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (348)
Q Consensus       161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT  240 (348)
                      ||+|++|||||+|++|+|||+++++....++|++++||||++|.++++++.||+++||.|+|+++||+++|||++|+|||
T Consensus        92 v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKS  171 (434)
T PRK08472         92 IPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKS  171 (434)
T ss_pred             EEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCHH
Confidence            99999999999999999999998876667889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957          241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE  320 (348)
Q Consensus       241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE  320 (348)
                      +|+..++.+.   +.+++||+++|||++|+.+++++.. .+        .++++++|++|+|+||++|++++|+|+++||
T Consensus       172 tLl~~i~~~~---~~~v~vi~~iGergrev~e~~~~~l-~~--------~l~~tvvV~atsddsp~~R~~~~~~a~~iAE  239 (434)
T PRK08472        172 TLMGMIVKGC---LAPIKVVALIGERGREIPEFIEKNL-GG--------DLENTVIVVATSDDSPLMRKYGAFCAMSVAE  239 (434)
T ss_pred             HHHHHHhhcc---CCCEEEEEeeCccchhHHHHHHHHh-cC--------cccceEEEEECCCCCHHHhhHHHHHHHHHHH
Confidence            9998777543   3589999999999999988776432 11        2579999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          321 HFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       321 yfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||| +|+||||+|||+||||+|++||
T Consensus       240 yFrd-~G~~Vll~~DslTr~A~A~REi  265 (434)
T PRK08472        240 YFKN-QGLDVLFIMDSVTRFAMAQREI  265 (434)
T ss_pred             HHHH-cCCCEEEecccchHHHHHHHHH
Confidence            9999 7999999999999999999997

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=5.1e-55  Score=441.03  Aligned_cols=249  Identities=24%  Similarity=0.405  Sum_probs=215.7

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhceEEeec-Cc--eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT  160 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~~--~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~  160 (348)
                      ...+|+|++|.|++++++++.  ..+...+++... +.  .+.+||+++.+++ +.+++|+++.||++|++|.+||++++
T Consensus        16 ~~~~G~v~~i~G~~i~~~~~~--~~ige~~~i~~~~~~~~~~~~EVi~~~~~~-~~l~~~~~~~gl~~g~~V~~tg~~~~   92 (438)
T PRK07721         16 YKRYGKVSRVIGLMIESKGPE--SSIGDVCYIHTKGGGDKAIKAEVVGFKDEH-VLLMPYTEVAEIAPGCLVEATGKPLE   92 (438)
T ss_pred             cceecEEEEEECcEEEEEECC--CCchheEEEEecCCCCceEEEEEEEEcCCE-EEEEEccCccCCCCCCEEEECCCccE
Confidence            345799999999999998642  233322344221 11  4789999998777 67999999999999999999999999


Q ss_pred             ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957          161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (348)
Q Consensus       161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT  240 (348)
                      ||||++|||||+|++|+|||+.+......++|++++||+|++|.+++++|+||+++||.|+|+++||+++|||++|+|||
T Consensus        93 v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKS  172 (438)
T PRK07721         93 VKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKS  172 (438)
T ss_pred             EEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCCHH
Confidence            99999999999999999999987444446789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957          241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE  320 (348)
Q Consensus       241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE  320 (348)
                      +|+..++.+ .  +.+..+|+++|||++|+.+++++..+.        ..+.|+++|++|+|+|+.+|++++|+|+|+||
T Consensus       173 tLl~~I~~~-~--~~~~gvI~~~Gerg~ev~e~~~~~l~~--------~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAE  241 (438)
T PRK07721        173 TLMGMIARN-T--SADLNVIALIGERGREVREFIERDLGP--------EGLKRSIVVVATSDQPALMRIKGAYTATAIAE  241 (438)
T ss_pred             HHHHHHhcc-c--CCCeEEEEEEecCCccHHHHHHhhcCh--------hhhcCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            999766543 2  457789999999999998877663222        23579999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          321 HFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       321 yfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||| +|+||||+||||||||+|++||
T Consensus       242 yfr~-~g~~Vll~~Dsltr~A~A~rEi  267 (438)
T PRK07721        242 YFRD-QGLNVMLMMDSVTRVAMAQREI  267 (438)
T ss_pred             HHHH-CCCcEEEEEeChHHHHHHHHHH
Confidence            9999 7999999999999999999986

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=100.00  E-value=6.3e-53  Score=424.45  Aligned_cols=246  Identities=28%  Similarity=0.503  Sum_probs=217.8

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEee-c-CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV  163 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~-~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV  163 (348)
                      .+|+|++|.|+++++.+.   ...++++..+. . ...+..||+++.+++ +.+++|++++||++|+.|..||++++||+
T Consensus         5 ~~G~V~~v~g~~v~v~~~---~~~~ge~~~i~~~~~~~~~~eVi~~~~~~-~~l~~~~~~~gl~~G~~V~~tg~~~~v~v   80 (422)
T TIGR02546         5 VRGRVTEVSGTLLKAVLP---GARVGELCLIRRRDPSQLLAEVVGFTGDE-ALLSPLGELHGISPGSEVIPTGRPLSIRV   80 (422)
T ss_pred             eeEEEEEEECcEEEEEEC---CCCCCCEEEEeeCCCCeEEEEEEEEcCCc-EEEEEccCccCCCCCCEEEECCCCceEEe
Confidence            469999999999999743   22234443332 1 235788999987765 66999999999999999999999999999


Q ss_pred             CccccccEEeeeCcccccCCCCcccc--cccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957          164 GRVTLGRIMNVIGEPIDEKGDLKTEH--YLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV  241 (348)
Q Consensus       164 G~~lLGRViD~lG~PiD~~g~i~~~~--~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~  241 (348)
                      |++|||||+|++|+|||+++++....  +||++++||||++|.++++||+||+++||.++|+++|||++|||++|+|||+
T Consensus        81 g~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKSt  160 (422)
T TIGR02546        81 GEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKST  160 (422)
T ss_pred             ChhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChHH
Confidence            99999999999999999998876553  6899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957          242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH  321 (348)
Q Consensus       242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy  321 (348)
                      |+..++.+.   +.+.++|++||||++|+.++++++...+        .++++++|++++|+|+.+|++++|+|+++|||
T Consensus       161 Ll~~I~~~~---~~~~~vi~~iG~~~~ev~~~~~~~~~~~--------~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~  229 (422)
T TIGR02546       161 LLGMIARGA---SADVNVIALIGERGREVREFIEHHLGEE--------GRKRSVLVVSTSDRPSLERLKAAYTATAIAEY  229 (422)
T ss_pred             HHHHHhCCC---CCCEEEEEEEccCCcCHHHHHHHHhccc--------cccceEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence            987665532   4588999999999999999888876554        35799999999999999999999999999999


Q ss_pred             hhhcCCCcEEEEEechhHHHhhhccc
Q 018957          322 FRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       322 frd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||| +|+|||+++||+||||+|++|+
T Consensus       230 f~~-~g~~Vl~~~Dsltr~a~A~rei  254 (422)
T TIGR02546       230 FRD-QGKRVLLMMDSLTRFARALREI  254 (422)
T ss_pred             HHH-CCCcEEEEEeCchHHHHHHHHH
Confidence            999 8999999999999999999997

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=1.5e-52  Score=422.37  Aligned_cols=245  Identities=29%  Similarity=0.424  Sum_probs=213.7

Q ss_pred             CceeeEEEEECCEEEEEeCCCC--hhhhhceEEeec-CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCcee
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGL--PPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV  161 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~gl--p~i~~~lev~~~-~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~V  161 (348)
                      ..+|+|++|.|.++++.   |+  ...+++++.++. ......||+.+ .++.+.+++|+++.||+.|++|.. ++++++
T Consensus        25 ~~~G~v~~v~g~~~~~~---g~~~~~~iGe~~~i~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~v~~-~~~~~v   99 (450)
T PRK06002         25 RIGGTVSEVTASHYRVR---GLSRFVRLGDFVAIRADGGTHLGEVVRV-DPDGVTVKPFEPRIEIGLGDAVFR-KGPLRI   99 (450)
T ss_pred             ceeEEEEEEeceEEEEE---cCccCCCCCCEEEEECCCCcEEEEEEEE-eCCeEEEEEccCCcCCCCCCEEEe-CCCcee
Confidence            44699999999999987   77  344455544432 22367788877 555677999999999999999999 668999


Q ss_pred             cCCccccccEEeeeCcccccCCCCcccc-cccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957          162 PVGRVTLGRIMNVIGEPIDEKGDLKTEH-YLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (348)
Q Consensus       162 pVG~~lLGRViD~lG~PiD~~g~i~~~~-~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT  240 (348)
                      ++|++|||||+|++|+|||+.+++.... ++|+++++|++++|..+++++.||+++||.|+||++|||++|||++|+|||
T Consensus       100 ~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKT  179 (450)
T PRK06002        100 RPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKS  179 (450)
T ss_pred             ecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHH
Confidence            9999999999999999999998876544 579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957          241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE  320 (348)
Q Consensus       241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE  320 (348)
                      ||+..+.. .  .+.+..+|+++|||++|+.+++++....         .++|+++|++|+|+||.+|++++|+|+|+||
T Consensus       180 TLL~~Ia~-l--~~pd~gvv~liGergrev~e~~~~~l~~---------~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAE  247 (450)
T PRK06002        180 TLLAMLAR-A--DAFDTVVIALVGERGREVREFLEDTLAD---------NLKKAVAVVATSDESPMMRRLAPLTATAIAE  247 (450)
T ss_pred             HHHHHHhC-C--CCCCeeeeeecccCCccHHHHhHHHHHH---------hhCCeEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            99975543 2  2457889999999999999887765443         2468999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          321 HFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       321 yfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||| +|+||||++|||||||+|++||
T Consensus       248 yfrd-~G~~Vll~~DslTr~A~A~rEi  273 (450)
T PRK06002        248 YFRD-RGENVLLIVDSVTRFAHAAREV  273 (450)
T ss_pred             HHHH-cCCCEEEeccchHHHHHHHHHH
Confidence            9999 7999999999999999999996

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=3.1e-52  Score=419.18  Aligned_cols=247  Identities=26%  Similarity=0.378  Sum_probs=219.0

Q ss_pred             cCCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957           83 GKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP  162 (348)
Q Consensus        83 ~~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp  162 (348)
                      ....+|+|++|.|.++++.   |+...+++++.+. +..+.+||+.+.+++ +.+++|++++||++|+.|..||++++||
T Consensus        18 ~~~~~g~v~~~~g~~~~~~---g~~~~ige~~~i~-~~~~~~eV~~~~~~~-~~~~~~~~~~gi~~g~~v~~~~~~~~v~   92 (432)
T PRK06793         18 FYTKVGKVHSVQEQFFVAK---GPKAKIGDVCFVG-EHNVLCEVIAIEKEN-NMLLPFEQTEKVCYGDSVTLIAEDVVIP   92 (432)
T ss_pred             ccceeeEEEEEEEEEEEEE---cCCCCcCCEEEEC-CCCEEEEEEEecCCc-EEEEEccCccCCCCCCEEEECCCccEEE
Confidence            3455799999999999986   6555555654443 335788999986666 5799999999999999999999999999


Q ss_pred             CCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHH
Q 018957          163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL  242 (348)
Q Consensus       163 VG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L  242 (348)
                      ||++|||||+|++|+|+|+++++....++|++.+||+|++|..+++++.||+++||.++|+++|||++|||++|+|||+|
T Consensus        93 vg~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtL  172 (432)
T PRK06793         93 RGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTL  172 (432)
T ss_pred             cCHhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHH
Confidence            99999999999999999998776656678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHH-HHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957          243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYRE-MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH  321 (348)
Q Consensus       243 ~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e-~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy  321 (348)
                      +.+++.+.   +.+..+++++|||++|+.+++++ +.+.         .++|+++|++++|+|+++|++++++|+++|||
T Consensus       173 l~~Ia~~~---~~~~gvI~~iGerg~ev~e~~~~~l~~~---------gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEy  240 (432)
T PRK06793        173 LGMIAKNA---KADINVISLVGERGREVKDFIRKELGEE---------GMRKSVVVVATSDESHLMQLRAAKLATSIAEY  240 (432)
T ss_pred             HHHHhccC---CCCeEEEEeCCCCcccHHHHHHHHhhhc---------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            98887654   35778999999999999998764 4333         35799999999999999999999999999999


Q ss_pred             hhhcCCCcEEEEEechhHHHhhhccc
Q 018957          322 FRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       322 frd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||| +|+||||++||+||||+|++||
T Consensus       241 fr~-~G~~VLlilDslTr~a~A~rei  265 (432)
T PRK06793        241 FRD-QGNNVLLMMDSVTRFADARRSV  265 (432)
T ss_pred             HHH-cCCcEEEEecchHHHHHHHHHH
Confidence            999 8999999999999999999986

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=100.00  E-value=6.3e-52  Score=417.15  Aligned_cols=248  Identities=23%  Similarity=0.373  Sum_probs=217.5

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhceEEe-ecCc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCcee
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVV-DHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV  161 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~-~~~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~V  161 (348)
                      ...+|+|++|.|.++++.   |+...+++++.+ ..+. ....||+.+.++ .+.+++|+++.||+.|++|.+||++++|
T Consensus        15 ~~~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~-~~~l~~~~~~~gi~~g~~v~~~~~~~~v   90 (434)
T PRK07196         15 ARVAGRLVRVTGLLLESV---GCRLAIGQRCRIESVDETFIEAQVVGFDRD-ITYLMPFKHPGGVLGGARVFPSEQDGEL   90 (434)
T ss_pred             cceeeEEEEEEcCEEEEe---cCCCCcCCEEEEEeCCCceEEEEEEEecCC-EEEEEECCCccCCCCCCEEEECCCccEE
Confidence            344699999999999997   555555565444 2123 578899998555 5669999999999999999999999999


Q ss_pred             cCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957          162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV  241 (348)
Q Consensus       162 pVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~  241 (348)
                      |||++|||||+|++|+|||+++++.....+|+++++|||++|.++++||+||+++||.++|+++|||++|||++|+||||
T Consensus        91 ~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKST  170 (434)
T PRK07196         91 LIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSV  170 (434)
T ss_pred             EcCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCccH
Confidence            99999999999999999999988766667899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957          242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH  321 (348)
Q Consensus       242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy  321 (348)
                      |+..|+. +.  +.++.|+++||+|++|+.+++++.....        .+.|++++++++|+|+.+|++++++++++|||
T Consensus       171 Ll~~I~g-~~--~~dv~vig~IGerg~ev~ef~~~~l~~~--------gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEy  239 (434)
T PRK07196        171 LLGMITR-YT--QADVVVVGLIGERGREVKEFIEHSLQAA--------GMAKSVVVAAPADESPLMRIKATELCHAIATY  239 (434)
T ss_pred             HHHHHhc-cc--CCCeEEEEEEeeecHHHHHHHHHHhhhc--------ccceEEEEEecCCCChhhhHHHHHHHHHHHHH
Confidence            9876554 32  3478889999999999999886643322        24699999999999999999999999999999


Q ss_pred             hhhcCCCcEEEEEechhHHHhhhccc
Q 018957          322 FRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       322 frd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||+ +|+||||+|||+||||+|++||
T Consensus       240 fr~-~g~~Vll~~Dsltr~a~A~REi  264 (434)
T PRK07196        240 YRD-KGHDVLLLVDSLTRYAMAQREI  264 (434)
T ss_pred             hhh-ccCCEEEeecchhHHHhhhhHH
Confidence            999 7999999999999999999997

>PRK06315 type III secretion system ATPase; Provisional

Probab=100.00  E-value=7.6e-50  Score=402.89  Aligned_cols=248  Identities=29%  Similarity=0.488  Sum_probs=216.2

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEeecCc--eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP  162 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~--~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp  162 (348)
                      ..+|+|++|.|+++++..   .+..+++++.+..+.  ...+||+.+.+ +.+.+++|+++.||++|+.|..||++++||
T Consensus        22 ~~~G~v~~i~g~~~~~~~---~~~~~ge~~~i~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~~g~~~~v~   97 (442)
T PRK06315         22 TVVGRITEVVGMLIKAVV---PDVRVGEVCLVKRHGMEPLVTEVVGFTQ-NFVFLSPLGELTGVSPSSEVIPTGLPLHIR   97 (442)
T ss_pred             eeccEEEEEECCEEEEEE---CCcccCCEEEEecCCCCEEEEEEEEEcC-CeEEEEEccCCcCCCCCCEEEeCCCccEEE
Confidence            446999999999999984   333444544433222  47889999865 678899999999999999999999999999


Q ss_pred             CCccccccEEeeeCccccc--CCCCc-ccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcH
Q 018957          163 VGRVTLGRIMNVIGEPIDE--KGDLK-TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK  239 (348)
Q Consensus       163 VG~~lLGRViD~lG~PiD~--~g~i~-~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGK  239 (348)
                      ||++|||||+|++|+|||+  ++++. ...++|+++.||+|++|.++++||+||||+||.++|+++|||++|||++|+||
T Consensus        98 vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~GK  177 (442)
T PRK06315         98 AGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGK  177 (442)
T ss_pred             ecccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCCCc
Confidence            9999999999999999998  76664 44678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHH
Q 018957          240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA  319 (348)
Q Consensus       240 T~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiA  319 (348)
                      |+|+..++.+..  +.+..||+++|||++|+.+++++..+..        .++++++|++|+++||.+|+..+++|+++|
T Consensus       178 StLl~~I~~~~~--~~~~~vi~liGerg~ev~~~~~~~l~~~--------g~~~svvvvats~q~p~~rlnp~~va~~IA  247 (442)
T PRK06315        178 SSLLGMIARNAE--EADVNVIALIGERGREVREFIEGDLGEE--------GMKRSVIVVSTSDQSSQLRLNAAYVGTAIA  247 (442)
T ss_pred             chHHHHhhcccc--cCCceEEEEECCCchHHHHHHHHHHHhc--------CCceEEEEEeCCCCCHHHHhhHHHHHHHHH
Confidence            999987776542  2366799999999999998887643221        346999999999999999999999999999


Q ss_pred             HHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          320 EHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       320 Eyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||||+ +|+|||+++||+||||+|++|+
T Consensus       248 E~~r~-~g~~Vl~~~Ds~tR~a~alreV  274 (442)
T PRK06315        248 EYFRD-QGKTVVLMMDSVTRFARALREV  274 (442)
T ss_pred             HHHHH-cCCCcchhhhHHHHHHHHHHHh
Confidence            99999 7999999999999999999987

>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A

Probab=100.00  E-value=9e-50  Score=390.63  Aligned_cols=153  Identities=29%  Similarity=0.433  Sum_probs=141.9

Q ss_pred             ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccch
Q 018957          189 HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR  268 (348)
Q Consensus       189 ~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~r  268 (348)
                      +.||+++++|++ +|..+++||+||||+||+|+||+||||++|||++|+|||+|+++|+++   .+.+++||++||||+|
T Consensus       121 ~~~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~---~~~dvvVyv~iGERg~  196 (369)
T cd01134         121 QKWPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKY---SNSDIVIYVGCGERGN  196 (369)
T ss_pred             eeeecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhC---CCCCEEEEEEeCCChH
Confidence            568999999988 999999999999999999999999999999999999999999988775   2568999999999999


Q ss_pred             hHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          269 EGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       269 Ev~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+.|++++|.+.....++ +..++||++|+||||+|+.+|++++|+|+|+|||||| +|+|||+++||+||||+|++||
T Consensus       197 Ev~e~l~ef~~l~~~~~~-~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd-~G~dVll~~Ds~tR~A~A~REI  273 (369)
T cd01134         197 EMTEVLEEFPELTDPVTG-EPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRD-MGYNVALMADSTSRWAEALREI  273 (369)
T ss_pred             HHHHHHHHHHhhcccccc-CCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcChhHHHHHHHHH
Confidence            999999999987654433 3468999999999999999999999999999999999 7999999999999999999997

These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.

>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]

Probab=100.00  E-value=5e-49  Score=395.58  Aligned_cols=250  Identities=29%  Similarity=0.431  Sum_probs=220.0

Q ss_pred             eeeEEEEECCEEEEEeCCCChhhhhceEEee-cCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957           87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR  165 (348)
Q Consensus        87 ~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~  165 (348)
                      .|+|.+|+||+|.++   |+..+. .++++. ++.+++.||+...|+. +.+++|++|.||++|++|.+||+|++|.+|+
T Consensus         2 ~G~i~~isGp~V~a~---gm~~~~-my~~v~Vg~~~L~gEiI~i~gd~-a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGP   76 (588)
T COG1155           2 MGKIIRISGPVVVAE---GMEGAK-MYDVVKVGEMGLIGEIIRIEGNR-ATIQVYEDTAGIRPGEKVENTGRPLSVELGP   76 (588)
T ss_pred             CceEEEEECCEEEEe---cCcCCc-eEEEEEEcCCceeEEEEEEeCCe-EEEEEEeecCCCCCCCeeecCCCceEEEeCc
Confidence            599999999999886   887654 455543 4568999999986655 6699999999999999999999999999999


Q ss_pred             cccccEEeeeCcccccC--------------CCCcc--------------------------------------------
Q 018957          166 VTLGRIMNVIGEPIDEK--------------GDLKT--------------------------------------------  187 (348)
Q Consensus       166 ~lLGRViD~lG~PiD~~--------------g~i~~--------------------------------------------  187 (348)
                      +||+.|+|++.+|||..              +++..                                            
T Consensus        77 Gll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~  156 (588)
T COG1155          77 GLLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGK  156 (588)
T ss_pred             cHHhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceE
Confidence            99999999999999652              01100                                            


Q ss_pred             ------------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCC
Q 018957          188 ------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV  237 (348)
Q Consensus       188 ------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~Gv  237 (348)
                                                    -++||+..+.| ..++.++++||.||+|+||+|+|+.||+.-+|.||+|+
T Consensus       157 v~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp-~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGs  235 (588)
T COG1155         157 VTWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARP-VKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGS  235 (588)
T ss_pred             EEEEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCcc-ccccCCCCCcccccceeehhhcccccCccccccCCCCC
Confidence                                          05799998888 58999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHH
Q 018957          238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT  317 (348)
Q Consensus       238 GKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~t  317 (348)
                      |||++.+++++..   +.|++||++||||++|++|++.+|.+......| +..|+||++++||+|+|..+|+.+.|+|+|
T Consensus       236 GKTV~qh~laK~s---dadiVVyigCGERGNEmtevL~eFPeL~Dp~tg-~~lm~RT~liaNTSnMPVAAREasIYtGiT  311 (588)
T COG1155         236 GKTVSQHTLSKLA---DGDIVIYVGCGERGNEMTEVLQEFPELKDPNTG-QPLMDRTVLIANTSNMPVAAREASIYTGIT  311 (588)
T ss_pred             CcEehhhhhhhhc---cCCEEEEEecCCccchHHHHHHhCccccCCCCC-CcccceeeEeecCccchHHHhhhhhhhhhh
Confidence            9999999888753   568999999999999999999999887654333 236899999999999999999999999999


Q ss_pred             HHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          318 VAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       318 iAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|||||| +|+||+++.||.+|||+|++||
T Consensus       312 iaEY~RD-mGy~v~lmADSTSRWAEAlREi  340 (588)
T COG1155         312 IAEYYRD-MGYDVALMADSTSRWAEALREI  340 (588)
T ss_pred             HHHHHHh-hhhhhHHhhchHHHHHHHHHHH
Confidence            9999999 7999999999999999999987

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=100.00  E-value=4.9e-48  Score=377.14  Aligned_cols=178  Identities=33%  Similarity=0.595  Sum_probs=165.7

Q ss_pred             CceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCC
Q 018957          158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV  237 (348)
Q Consensus       158 ~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~Gv  237 (348)
                      +++||||++|||||+|++|+|||+.+++...++||++..+|+|++|.++++++.||+++||.++|+++|||++|||++|+
T Consensus         1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~   80 (326)
T cd01136           1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV   80 (326)
T ss_pred             CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence            47899999999999999999999998876777899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHH
Q 018957          238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT  317 (348)
Q Consensus       238 GKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~t  317 (348)
                      |||+|+..++.+ .  +.+++||++||||++|+.++++++.+.+.        ++|+++|++|+|+||.+|++++|+|+|
T Consensus        81 GKTtLl~~Ia~~-~--~~~~~vi~~iGer~~ev~~~~~~~~~~~~--------l~rtvvv~~t~d~~~~~r~~~~~~a~~  149 (326)
T cd01136          81 GKSTLLGMIARG-T--TADVNVIALIGERGREVREFIEKDLGEEG--------LKRSVVVVATSDESPLLRVKAAYTATA  149 (326)
T ss_pred             ChHHHHHHHhCC-C--CCCEEEEEEEecCCccHHHHHHHHHhcCc--------cceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            999998766543 2  45789999999999999999998877653        469999999999999999999999999


Q ss_pred             HHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          318 VAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       318 iAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|||||| +||||||++|||||||+|++|+
T Consensus       150 ~AEyfr~-~g~~Vll~~Dsltr~a~A~rei  178 (326)
T cd01136         150 IAEYFRD-QGKDVLLLMDSLTRFAMAQREI  178 (326)
T ss_pred             HHHHHHH-cCCCeEEEeccchHHHHHHHHH
Confidence            9999999 8999999999999999999986

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK14698 V-type ATP synthase subunit A; Provisional

Probab=100.00  E-value=4.3e-46  Score=404.92  Aligned_cols=151  Identities=28%  Similarity=0.428  Sum_probs=125.9

Q ss_pred             CceeeEEEEECCEEEEEeCCCC-hhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGL-PPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV  163 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~gl-p~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV  163 (348)
                      +.+|+|++|.|+++.++   |+ ...++++..+. +.++..||+.+.+ +.+.+|+|+++.||+.|++|..||++++|++
T Consensus         2 ~~~G~V~~V~G~lv~a~---g~~~~~iGE~v~I~-~~~l~gEVIg~~~-d~a~iq~~e~t~Gl~~G~~V~~tg~~l~V~l   76 (1017)
T PRK14698          2 PAKGRIIRVTGPLVIAD---GMKGAKMYEVVRVG-ELGLIGEIIRLEG-DKAVIQVYEETAGLKPGEPVEGTGSSLSVEL   76 (1017)
T ss_pred             CCceEEEEEEcCEEEEe---cCcCCCCCCEEEEC-CCcEEEEEEEEeC-CEEEEEECCCCCCCCCCCEEEEcCCcceeec
Confidence            35799999999999997   66 23334443333 3458899999854 5566999999999999999999999999999


Q ss_pred             CccccccEEeeeCcccccC----C----------CCcc------------------------------------------
Q 018957          164 GRVTLGRIMNVIGEPIDEK----G----------DLKT------------------------------------------  187 (348)
Q Consensus       164 G~~lLGRViD~lG~PiD~~----g----------~i~~------------------------------------------  187 (348)
                      |++|||||+|++|+||+..    +          ++..                                          
T Consensus        77 G~~LLGRV~DGlGrPL~~~~~~~~~~i~~g~~~~~l~~~~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~  156 (1017)
T PRK14698         77 GPGLLTSIYDGIQRPLEVIREKSGDFIARGISAPALPRDKKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIE  156 (1017)
T ss_pred             CHHHhhcccCCCCChHHHHHHHhcccccCCCCCCCCCCCCeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCC
Confidence            9999999999999999652    1          1100                                          


Q ss_pred             ---------------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecC
Q 018957          188 ---------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGG  234 (348)
Q Consensus       188 ---------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~  234 (348)
                                                       -+.||++.+.| ..++.+++.||.||+|+||+|||+.||+..+|+|+
T Consensus       157 g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~wpvr~~r~-~~~~~~~~~pl~tgqrv~d~~fp~~~ggt~~~~G~  235 (1017)
T PRK14698        157 GEIVEIADEGEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGP  235 (1017)
T ss_pred             EEEEEEcCCCCcceeeEEEEEEcCCCCEEEeeeEecCCCCCCCc-ccccCCCCcccccccchHhhhhhhhcCceeEeccC
Confidence                                             05699998886 78999999999999999999999999999999999


Q ss_pred             CCCcHHH
Q 018957          235 AGVGKTV  241 (348)
Q Consensus       235 ~GvGKT~  241 (348)
                      +|+||++
T Consensus       236 ~G~GKCV  242 (1017)
T PRK14698        236 FGSGKCV  242 (1017)
T ss_pred             CCcCccc
Confidence            9999943

>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]

Probab=100.00  E-value=5.3e-47  Score=370.77  Aligned_cols=260  Identities=28%  Similarity=0.418  Sum_probs=220.4

Q ss_pred             ccccccCCceeeEEEEECCEEEEEeCCCChhhh-hceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecC
Q 018957           78 TDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTG  156 (348)
Q Consensus        78 ~~~~~~~~~~G~V~~V~G~vV~v~f~~glp~i~-~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg  156 (348)
                      +.+...+..+|+|.+|+||||.++   +|..+. .++--+++ ..++.||+...|+ ...++++++|.|+..||+|.+||
T Consensus        12 ~~~e~~es~~G~v~~VSGPVV~a~---~M~G~aMYELVrVGh-~~LvGEiIrlegD-~aTIQVYEeTsG~tVgDpvlrTg   86 (618)
T KOG1352|consen   12 SLDEEEESEYGRVYSVSGPVVVAE---NMAGCAMYELVRVGH-DELVGEIIRLEGD-MATIQVYEETSGLTVGDPVLRTG   86 (618)
T ss_pred             cccchhhhccceEEeccCceEehh---cccchHHHHHHHcch-HhhhhheeEecCc-eeEEEEEeccCCcccCCchhhcC
Confidence            344556788999999999999875   443332 12222244 3689999987554 56699999999999999999999


Q ss_pred             CCceecCCccccccEEeeeCcccccCCCC---------------cc----------------------------------
Q 018957          157 SPITVPVGRVTLGRIMNVIGEPIDEKGDL---------------KT----------------------------------  187 (348)
Q Consensus       157 ~~l~VpVG~~lLGRViD~lG~PiD~~g~i---------------~~----------------------------------  187 (348)
                      +|++|.+|++++|.|+|++.+||.....+               ..                                  
T Consensus        87 kPLsvELGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~h  166 (618)
T KOG1352|consen   87 KPLSVELGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKH  166 (618)
T ss_pred             CcceEeeCcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhc
Confidence            99999999999999999999999542110               00                                  


Q ss_pred             -----------------------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccC
Q 018957          188 -----------------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRG  226 (348)
Q Consensus       188 -----------------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkG  226 (348)
                                                               -+.||++.+.| ..+..+.+.||.||.|++|+|+||++|
T Consensus       167 ki~lpPr~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRP-v~ekl~an~PLltGQRvLDalfPcVqG  245 (618)
T KOG1352|consen  167 KILLPPRARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRP-VTEKLPANHPLLTGQRVLDALFPCVQG  245 (618)
T ss_pred             eeecCCccCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcc-hhhccCCCCcccccchHHHhhcchhcC
Confidence                                                     05699988887 789999999999999999999999999


Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcc-cCCCeeEEEEecCCCCH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDK-QADSKCALVYGQMNEPP  305 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~-~~~~rtvvV~~tsdep~  305 (348)
                      +...|.|.+|||||+|.+.+.+.   .+.|.+||++||||++|+.|++++|.+..+.--|.. ..|+||++|+||+|+|.
T Consensus       246 GTtaIPGAFGCGKTVISQsLSKY---SNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPV  322 (618)
T KOG1352|consen  246 GTTAIPGAFGCGKTVISQSLSKY---SNSDAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPV  322 (618)
T ss_pred             CccccCcccccchHHHHHHHhhc---cCCCeEEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCch
Confidence            99999999999999999988764   357999999999999999999999998764222222 36899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       306 ~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      .+|..+.|||+|+|||||| +|+||-.+.||.+|||+|++||
T Consensus       323 AAREASIYTGITlsEYfRD-mG~nVsMmADStSRWAEALREI  363 (618)
T KOG1352|consen  323 AAREASIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREI  363 (618)
T ss_pred             hhhhhhhhhcccHHHHHHh-cCcceeeeecchhHHHHHHHHh
Confidence            9999999999999999999 7999999999999999999997

>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]

Probab=100.00  E-value=4.9e-44  Score=351.30  Aligned_cols=251  Identities=23%  Similarity=0.324  Sum_probs=217.8

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhc-eEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCE-EEecCCCceecC
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTA-LEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQR-VLNTGSPITVPV  163 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~-lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~-V~~tg~~l~VpV  163 (348)
                      .|-+|++|.||++.|+-.+|..  |++ +++.......-.+-+.....+.+.+++|++|.||...+. |.++|+++++|+
T Consensus         6 ~Y~~i~~i~Gplv~ve~~eg~~--y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~v   83 (463)
T COG1156           6 EYTTISEIKGPLIIVEGVEGAS--YGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPV   83 (463)
T ss_pred             eeeeEEEeccceEEEecccCCC--cceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEee
Confidence            4789999999999987333321  222 333222222223333344666777999999999996655 999999999999


Q ss_pred             CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957          164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI  243 (348)
Q Consensus       164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~  243 (348)
                      ++.+||||||++|+|||+.+.+.+++..+|++.|.||..|..+.++++|||++||.|+++.||||++||+++|..++.|+
T Consensus        84 s~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~La  163 (463)
T COG1156          84 SEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELA  163 (463)
T ss_pred             cHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHHHH
Confidence            99999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcC---C-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHH
Q 018957          244 MELINNVAKAHG---G-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA  319 (348)
Q Consensus       244 ~~ii~n~a~~~~---~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiA  319 (348)
                      .+++++ |+..+   . .+||+++|-..+|...|.++|++.|++        +|+++|.+.+|+|+.+|..+|.+|+|.|
T Consensus       164 aqIarQ-A~v~~~~e~favVfaamGit~eea~fF~~~fe~tGal--------~r~vlflnlA~dp~vEri~tPr~aLt~A  234 (463)
T COG1156         164 AQIARQ-ATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETGAL--------DRAVLFLNLADDPAVERIITPRMALTVA  234 (463)
T ss_pred             HHHHHh-cccCCCccceeEEEeecCccHHHHHHHHHHHHhhhhh--------hhhHhhhhccCCCceeEecchhHHHHHH
Confidence            998874 44322   2 479999999999999999999999965        6999999999999999999999999999


Q ss_pred             HHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          320 EHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       320 Eyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||..++++|||+++.|||+||+|++||
T Consensus       235 EylA~e~~~hVLVilTDMTnyceALREI  262 (463)
T COG1156         235 EYLAFEKDMHVLVILTDMTNYCEALREI  262 (463)
T ss_pred             HHHhccCCceEEEEEcchhHHHHHHHHH
Confidence            9999999999999999999999999987

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=7.6e-41  Score=309.93  Aligned_cols=124  Identities=47%  Similarity=0.764  Sum_probs=116.5

Q ss_pred             cceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCC
Q 018957          212 TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD  291 (348)
Q Consensus       212 TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~  291 (348)
                      ||||+||+|+||+||||++|||++|+|||+|++++++|+.   .+++||++||||++|+.++++++++.+.+        
T Consensus         1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~~~~~~--------   69 (215)
T PF00006_consen    1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELKGEGAL--------   69 (215)
T ss_dssp             -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHHHTTGG--------
T ss_pred             CCCceeccccccccCCEEEEEcCcccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHhhcccc--------
Confidence            8999999999999999999999999999999999999873   47789999999999999999999888754        


Q ss_pred             CeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       292 ~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +||++|++|+|+||.+|++++|+||++|||||| +|||||+++|||||||+|++|+
T Consensus        70 ~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd-~G~dVlli~Dsltr~a~A~rei  124 (215)
T PF00006_consen   70 ERTVVVAATSDEPPAARYRAPYTALTIAEYFRD-QGKDVLLIIDSLTRWAQAYREI  124 (215)
T ss_dssp             GGEEEEEEETTS-HHHHHHHHHHHHHHHHHHHH-TTSEEEEEEETHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHhhhhccchhhhHHHhh-cCCceeehhhhhHHHHHHHHhh
Confidence            699999999999999999999999999999999 8999999999999999999986

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>PRK12608 transcription termination factor Rho; Provisional

Probab=100.00  E-value=3.6e-40  Score=325.94  Aligned_cols=181  Identities=22%  Similarity=0.241  Sum_probs=165.8

Q ss_pred             CCCCCCCEEEecCCCceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhccccccee-ecceeeeeceee
Q 018957          144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQIL-VTGIKVVDLLAP  222 (348)
Q Consensus       144 ~GL~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l-~TGIkvID~l~P  222 (348)
                      .+|+.|+.|..++++   ++++.+||||+|++|+|+|+..    ...++.+..|++|.+|..+++++ .+|+|+||+|+|
T Consensus        57 ~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l~P  129 (380)
T PRK12608         57 FNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDLVAP  129 (380)
T ss_pred             hCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhhheee
Confidence            699999999999988   9999999999999999999873    23456778889999999999888 999999999999


Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecC
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM  301 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~ts  301 (348)
                      ||||||++|||++|+|||+|+.+++++..++|+++ |+|++||||++|+.+|++.+.               .+|+++++
T Consensus       130 iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~---------------~~Vvast~  194 (380)
T PRK12608        130 IGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVK---------------GEVYASTF  194 (380)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHh---------------hhEEeecC
Confidence            99999999999999999999999998887666676 699999999999998777652               36889999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       302 dep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+|+..|.++.++++++||||++ +|+||+||+||+||||+|++|+
T Consensus       195 de~~~~~~~v~~~~~~~Ae~f~~-~GkdVVLvlDsltr~A~A~rei  239 (380)
T PRK12608        195 DRPPDEHIRVAELVLERAKRLVE-QGKDVVILLDSLTRLARAYNNE  239 (380)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEeCcHHHHHHHHhh
Confidence            99999999999999999999999 7999999999999999999986

>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]

Probab=100.00  E-value=5.1e-40  Score=313.11  Aligned_cols=251  Identities=26%  Similarity=0.368  Sum_probs=217.6

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhc--eEEeecC--ceeEEEEeeeccCceEEEEeecCCCCCC-CCCEEEecCCC
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTA--LEVVDHS--VRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSP  158 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~--lev~~~~--~~~~~EVv~~lg~~~V~~i~~~~t~GL~-~G~~V~~tg~~  158 (348)
                      +-.|-+|+.|.||+|...-.. .|.....  +.+.++.  .+.++||.   |++.| +++|++|.|+. .-+.|.+||+.
T Consensus        21 rl~y~tv~gvngplvild~vk-fp~y~eiv~ltlpdgt~r~gqvlev~---g~kav-vqvfegtsgid~k~t~~eftg~~   95 (489)
T KOG1351|consen   21 RLTYRTVSGVNGPLVILDKVK-FPKYAEIVNLTLPDGSVRSGQVLEVS---GEKAV-VQVFEGTSGIDAKKTTVEFTGEI   95 (489)
T ss_pred             ceeEeeecccCCceEEEeccc-ccchhhheEEecCCCCeecceEEEec---CCeeE-EEEeccccccccccceEEEeccc
Confidence            456899999999988543111 2222211  3333332  24577776   55655 99999999997 67999999999


Q ss_pred             ceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCc
Q 018957          159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG  238 (348)
Q Consensus       159 l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvG  238 (348)
                      ++.||++++||||||+.|+|||.++++-++.+..|++.|.||..|..++|+++|||.+||.|+.|.||||++||+.+|.+
T Consensus        96 lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifsaaglp  175 (489)
T KOG1351|consen   96 LRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLP  175 (489)
T ss_pred             ccccccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccceeecCCCC
Confidence            99999999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH--h--------hcCC--EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHH
Q 018957          239 KTVLIMELINNVA--K--------AHGG--FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPG  306 (348)
Q Consensus       239 KT~L~~~ii~n~a--~--------~~~~--~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~  306 (348)
                      ++.++.+++++..  +        .|.|  .+||+++|-.-+....|.++|++.|        ++.|+++|.+.+|+|..
T Consensus       176 hneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeeng--------sm~~v~lflnlandpti  247 (489)
T KOG1351|consen  176 HNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENG--------SMERVCLFLNLANDPTI  247 (489)
T ss_pred             hhHHHHHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhcC--------CccceEEEEecCCCCch
Confidence            9999999987532  1        1222  4699999999999999999999998        45799999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          307 ARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       307 ~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|...|..|+|.|||+.++++||||+++.||+.||+|++|+
T Consensus       248 eriitprlalt~aeflayq~ekhvlviltdmssya~alrev  288 (489)
T KOG1351|consen  248 ERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREV  288 (489)
T ss_pred             hhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999986

>PRK12678 transcription termination factor Rho; Provisional

Probab=100.00  E-value=1.8e-37  Score=318.05  Aligned_cols=183  Identities=20%  Similarity=0.243  Sum_probs=147.7

Q ss_pred             CCCCCCCEEEecCCCceecC------CccccccEEeeeCcccccCC-CCcccccccccCCCcchhhccccc-ceeeccee
Q 018957          144 EGLVRGQRVLNTGSPITVPV------GRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQ-QILVTGIK  215 (348)
Q Consensus       144 ~GL~~G~~V~~tg~~l~VpV------G~~lLGRViD~lG~PiD~~g-~i~~~~~~pi~~~~p~~~~R~~~~-e~l~TGIk  215 (348)
                      .+|+.||.|...-++.+=.-      -..-|-+|-.+.|.+.+... ...++...     |++|++|..++ +++.||+|
T Consensus       331 ~~Lr~Gd~v~G~vr~p~~~e~~~~r~k~~~l~~v~~vNg~~~e~~~~r~~F~~Lt-----p~~P~~R~~le~e~~~~giR  405 (672)
T PRK12678        331 NGLRKGDAVTGAVRAPREGEQGNQRQKFNPLVRLDSVNGMSPEEAKKRPEFGKLT-----PLYPNERLRLETEPKKLTTR  405 (672)
T ss_pred             cCCCCCCEEEEeecCCCCCccccccceeeeeeeEeeeCCCChHHhccCCCcccCC-----CCChHHhcccccCcccccce
Confidence            59999999986533221111      01245577777777665422 22233333     44599999998 99999999


Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEeeccchhHHHHHHHHHHcCccccCcccCCCee
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKC  294 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rt  294 (348)
                      +||+|+|||||||++|||++|+|||+|+++|+++.+++|.++ +||++||||++||.+    |+++.           +.
T Consensus       406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtd----m~rsV-----------kg  470 (672)
T PRK12678        406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTD----MQRSV-----------KG  470 (672)
T ss_pred             eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHH----HHHhc-----------cc
Confidence            999999999999999999999999999999888777777765 689999999999976    43331           34


Q ss_pred             EEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          295 ALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       295 vvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      .||++|+|+||..|++++|+||++||||+| +|+|||||||||||||+|++++
T Consensus       471 eVVasT~D~p~~~~~~~a~~ai~~Ae~fre-~G~dVlillDSlTR~ArAyrev  522 (672)
T PRK12678        471 EVIASTFDRPPSDHTTVAELAIERAKRLVE-LGKDVVVLLDSITRLGRAYNLA  522 (672)
T ss_pred             eEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEeCchHHHHHHHHh
Confidence            499999999999999999999999999999 8999999999999999999986

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=100.00  E-value=6.1e-35  Score=290.02  Aligned_cols=183  Identities=21%  Similarity=0.258  Sum_probs=152.9

Q ss_pred             CCCCCCCEEEecCCCceecCCccccccEEeeeCcccccCC-CCcccccccccCCCcchhhcccccc--eeecceeeeece
Q 018957          144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQ--ILVTGIKVVDLL  220 (348)
Q Consensus       144 ~GL~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PiD~~g-~i~~~~~~pi~~~~p~~~~R~~~~e--~l~TGIkvID~l  220 (348)
                      .+|+.||.|...-++.+=.--..-|-+|-.++|.+.+... ....+...     |++|.+|..+++  ++.||+|+||+|
T Consensus        89 ~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~-----p~~p~~R~~le~~~~~~~~~rvID~l  163 (416)
T PRK09376         89 FNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLT-----PLYPNERLRLETGNPEDLSTRIIDLI  163 (416)
T ss_pred             cCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcCCCCcccCC-----CCChhhcccccCCCCcccceeeeeee
Confidence            6999999998876553322112245688888898876532 22233333     455999999987  799999999999


Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEe
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG  299 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~  299 (348)
                      +|||||||++||||+|+|||||++++.++...+|.++ +++++||||++|+.++++++.               .+||++
T Consensus       164 ~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl---------------g~vv~s  228 (416)
T PRK09376        164 APIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK---------------GEVVAS  228 (416)
T ss_pred             cccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc---------------CcEEEE
Confidence            9999999999999999999999999888776656665 588999999999988777652               369999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       300 tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+|+||..|++++|.++++||||++ +|+|||||+|||||||+|+||+
T Consensus       229 t~d~~~~~~~~~a~~~ie~Ae~~~e-~G~dVlL~iDsItR~arAqrev  275 (416)
T PRK09376        229 TFDEPAERHVQVAEMVIEKAKRLVE-HGKDVVILLDSITRLARAYNTV  275 (416)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEEChHHHHHHHHhh
Confidence            9999999999999999999999998 8999999999999999999986

>KOG1353 consensus F0F1-type ATP synthase, alpha subunit [Energy production and conversion]

Probab=99.97  E-value=4.1e-32  Score=254.01  Aligned_cols=232  Identities=22%  Similarity=0.303  Sum_probs=202.2

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      .+.|+|.+|.+.+..|.   ||.++. +-|+++|+ .-+.+++.+++.+.|.+.+|++..-++.|+.|..|+....||++
T Consensus        19 eEtgrVLsIGdGIArV~---GL~nvQ-AeEmvEFs-sGlKgmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg   93 (340)
T KOG1353|consen   19 EETGRVLSIGDGIARVY---GLTNVQ-AEEMVEFS-SGLKGMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDVPPL   93 (340)
T ss_pred             hhccceEEEcCceeeee---cccccc-hHHHHhhh-ccccchhccccCCceEEEEEcCcceeccCceEEeeeeeeccCch
Confidence            34799999999999986   999987 67888886 35788999999999999999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957          165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      +.||||+.|.+|+|+|++|++......        ...|.+..+|++||+|++|+++|||||||.+|+|++.+|||.|+.
T Consensus        94 ~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTsla~  165 (340)
T KOG1353|consen   94 KALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSLAI  165 (340)
T ss_pred             HHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCceeeee
Confidence            999999999999999999998755433        466889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcC-------CEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHH
Q 018957          245 ELINNVAKAHG-------GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT  317 (348)
Q Consensus       245 ~ii~n~a~~~~-------~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~t  317 (348)
                      +.|.|+...+.       -+|||++||++.+.+..+++.|.+.+.        ++++++|.+|+++.-...+..|+.-++
T Consensus       166 dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a--------~~y~ivv~atasq~gdvsayiptnvis  237 (340)
T KOG1353|consen  166 DTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADA--------MEYSIVVAATASQAGDVSAYIPTNVIS  237 (340)
T ss_pred             hhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHHHhcCC--------ceEEEEEEeecccccceeeecccceee
Confidence            99999864332       379999999999999999999999984        579999999999988888888888887


Q ss_pred             HHHHhhhcCCCcEEEEEechhHHH
Q 018957          318 VAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       318 iAEyfrd~~G~dVLli~DslTR~A  341 (348)
                      |   +.+ -.....+||+.+..-.
T Consensus       238 i---dgq-i~l~t~lfy~girpai  257 (340)
T KOG1353|consen  238 I---DGQ-IFLETELFYKGIRPAI  257 (340)
T ss_pred             e---cch-hHHHHHHHHhccchhh
Confidence            7   444 3455556666655433

>TIGR00767 rho transcription termination factor Rho

Probab=99.95  E-value=1.8e-27  Score=237.50  Aligned_cols=182  Identities=20%  Similarity=0.271  Sum_probs=138.7

Q ss_pred             CCCCCCCEEEecCCCceecCC-ccccccEEeeeCccccc-CCCCcccccccccCCCcchhhcccc-cceeecceeeeece
Q 018957          144 EGLVRGQRVLNTGSPITVPVG-RVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATE-QQILVTGIKVVDLL  220 (348)
Q Consensus       144 ~GL~~G~~V~~tg~~l~VpVG-~~lLGRViD~lG~PiD~-~g~i~~~~~~pi~~~~p~~~~R~~~-~e~l~TGIkvID~l  220 (348)
                      .+|+.||.|...-++..-.-- .+++ ++-...|.+.+. .+.+..++..|++     |.+|... ..+-..|+|+||++
T Consensus        89 ~~lr~gd~v~g~~R~~~~~ER~~~Ll-~v~~vn~~~~e~~~~ri~Fe~LTf~Y-----P~er~~Le~~~~~~~~R~id~~  162 (415)
T TIGR00767        89 FNLRTGDTIEGQIRSPKEGERYFALL-KVESVNGDDPEKAKNRVLFENLTPLY-----PNERLRLETSTEDLSTRVLDLF  162 (415)
T ss_pred             cCCCCCCEEEEEEeccccHhHHHHHh-CCCccCCCCccccCCCeEEEEeeecC-----CCccceeecCccccceeeeeeE
Confidence            689999999876443210000 0111 222223433322 3345556666776     3344333 24567899999999


Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEe
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG  299 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~  299 (348)
                      +||++|||++|+|++|+|||+|+..+.++..++|.+ +++++++|||++|+.++++.+               ...||++
T Consensus       163 ~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI---------------lg~Vvas  227 (415)
T TIGR00767       163 APIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV---------------KGEVVAS  227 (415)
T ss_pred             EEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh---------------hceEEEe
Confidence            999999999999999999999999888776555555 568899999999998877764               2469999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       300 tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+|+|+..|.++++.+++.||||++ +|+||+|++|++||||+|+||+
T Consensus       228 t~d~p~~~~~~va~~v~e~Ae~~~~-~GkdVVLlIDEitR~arAqrei  274 (415)
T TIGR00767       228 TFDEPASRHVQVAEMVIEKAKRLVE-HKKDVVILLDSITRLARAYNTV  274 (415)
T ss_pred             cCCCChHHHHHHHHHHHHHHHHHHH-cCCCeEEEEEChhHHHHHHHHh
Confidence            9999999999999999999999998 7999999999999999999986

Members of this family differ in the specificity of RNA binding.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.94  E-value=4.2e-27  Score=222.58  Aligned_cols=119  Identities=27%  Similarity=0.446  Sum_probs=107.2

Q ss_pred             ceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEeeccchhHHHHHHHHHHcCccccCcccCC
Q 018957          213 GIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQAD  291 (348)
Q Consensus       213 GIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~  291 (348)
                      ..|+||+|+|+++|||++|||++|+|||||+.+++++....|.++ ++++++|||++|+.++++++              
T Consensus         3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I--------------   68 (249)
T cd01128           3 STRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV--------------   68 (249)
T ss_pred             chhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh--------------
Confidence            359999999999999999999999999999998887664444455 46677999999998877765              


Q ss_pred             CeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       292 ~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                       ++++|++++|+|+..|+++++.++++||||++ +|+||++|+|+++|||+|++|+
T Consensus        69 -~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~-~G~~vll~iDei~r~a~a~~ev  122 (249)
T cd01128          69 -KGEVIASTFDEPPERHVQVAEMVLEKAKRLVE-HGKDVVILLDSITRLARAYNTV  122 (249)
T ss_pred             -ccEEEEecCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHhhhhhhhc
Confidence             47899999999999999999999999999998 7999999999999999999987

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>COG1158 Rho Transcription termination factor [Transcription]

Probab=99.94  E-value=4.4e-26  Score=220.75  Aligned_cols=183  Identities=22%  Similarity=0.303  Sum_probs=148.6

Q ss_pred             CCCCCCCEEEecCCCceecCCccccccEEeeeCccccc-CCCCcccccccccCCCcchhhcccccce-e--ecceeeeec
Q 018957          144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQQI-L--VTGIKVVDL  219 (348)
Q Consensus       144 ~GL~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PiD~-~g~i~~~~~~pi~~~~p~~~~R~~~~e~-l--~TGIkvID~  219 (348)
                      .+|+.||.|...-++.+=.--..-|=||--++|++.+. +..+..+..+|++     |.+|...+.. -  .-.-|+||+
T Consensus        92 f~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe~~~~R~~F~~LTPly-----P~erl~LE~~~~~~~ls~RviDL  166 (422)
T COG1158          92 FNLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPEKAKNRVLFENLTPLY-----PNERLKLERENGSTDLSTRVIDL  166 (422)
T ss_pred             ccCccCCEEeeeecCCCcccceeeeEEEeecCCCCHHHhhccCCcccCCCCC-----CcceeeeecCCCcccchhHHHhh
Confidence            58999999988765554333333344777778887764 2334456678888     4555443311 1  123499999


Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEE-EEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEE
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY  298 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~-V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~  298 (348)
                      +.|||||||.+|++|+.+|||+|++++++.++.+|+++. ++.+|+||++||+|    |+++.           +..||+
T Consensus       167 ~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTd----mqrsV-----------~geVia  231 (422)
T COG1158         167 ISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTD----MQRSV-----------KGEVVA  231 (422)
T ss_pred             hcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHH----HHHhh-----------cceEEe
Confidence            999999999999999999999999999999999999975 77899999999977    66664           477999


Q ss_pred             ecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       299 ~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|.|+||..|..++...+.-|.++.+ +||||++++|||||+|+|||.+
T Consensus       232 STFDepp~~HvqVAE~viEkAKRlVE-~~kDVVILLDSITRLaRAYN~v  279 (422)
T COG1158         232 STFDEPPSRHVQVAEMVIEKAKRLVE-HGKDVVILLDSITRLARAYNTV  279 (422)
T ss_pred             ecCCCcchhhHHHHHHHHHHHHHHHH-cCCcEEEEehhHHHHHHHhccc
Confidence            99999999999999999999999998 8999999999999999999975

>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel

Probab=98.94  E-value=4.7e-10  Score=79.80  Aligned_cols=47  Identities=77%  Similarity=0.924  Sum_probs=35.6

Q ss_pred             ChhhhHhHHHhhhhcccCCCCCCCCCCCcC--CCcccccCCchhhhhhh
Q 018957            1 MASRRLLSSLLRSSVRRSPSKSSLSNSSVF--SPAATRRASPYGHLLSR   47 (348)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   47 (348)
                      ||+||+|++|+|+++|++.+++.+.++++.  ++.+.+|++|+||+|+|
T Consensus         1 MASRR~lSSlLRSssrr~~sks~l~~~~pr~~sp~p~~R~SP~gyLLnR   49 (49)
T PF11421_consen    1 MASRRLLSSLLRSSSRRSASKSPLSNSSPRLPSPSPASRASPYGYLLNR   49 (49)
T ss_dssp             ---SHHHHHHHHHHHTTSSSST-GGGGTTTTSTTT-STT-SHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhcccccccccccCCCCCCCccccCCCCccchhccC
Confidence            999999999999999999998888777663  34457899999999987

CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.

>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.67  E-value=6.2e-08  Score=73.77  Aligned_cols=66  Identities=44%  Similarity=0.569  Sum_probs=52.0

Q ss_pred             EEEEECCEEEEEeCCC-ChhhhhceEEe--ecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecC
Q 018957           90 VCQVIGAVVDVRFDEG-LPPILTALEVV--DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTG  156 (348)
Q Consensus        90 V~~V~G~vV~v~f~~g-lp~i~~~lev~--~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg  156 (348)
                      |++|.|++++++|..+ +|.+++.+++.  ++. ...++.+.+++++.+++|+|++++||++|++|.+||
T Consensus         1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~-~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G~~V~~tG   69 (69)
T PF02874_consen    1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFG-NGVLGEVVGLDEDEVRLQVFGSTDGLSRGTEVRFTG   69 (69)
T ss_dssp             EEEEECTEEEEECSEEEEEETTTEEEEEEEEET-TEEEEEEEEEETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred             CccccceEEEEEcCCCCCCCccEEEEEecccce-eeeeeeecccCccEEEEEEecCCCCCCCCCEEEcCc
Confidence            7899999999987643 46666555544  333 445666667799999999999999999999999986

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.37  E-value=7.2e-06  Score=69.31  Aligned_cols=100  Identities=30%  Similarity=0.477  Sum_probs=69.9

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR  308 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r  308 (348)
                      ++|+|++|+|||+++.+++...+. ++..++|....+...+..+.+..+...+        ..++..++....+......
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~   72 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKG--------ALDNLIIVFATADDPAAAR   72 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhcc--------ccccEEEEEcCCCCCcHHH
Confidence            579999999999999999887654 4567788888888777655443343332        2245566666665554444


Q ss_pred             HHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhh
Q 018957          309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS  344 (348)
Q Consensus       309 ~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~  344 (348)
                      ..      .+++|+.. ..+..++++|+++.+.+..
T Consensus        73 ~~------~~~~~~~~-~~~~~~lviDe~~~~~~~~  101 (165)
T cd01120          73 LL------SKAERLRE-RGGDDLIILDELTRLVRAL  101 (165)
T ss_pred             HH------HHHHHHHh-CCCCEEEEEEcHHHHHHHH
Confidence            33      55677777 5777899999999887653

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=98.22  E-value=8.9e-06  Score=76.80  Aligned_cols=129  Identities=20%  Similarity=0.166  Sum_probs=86.4

Q ss_pred             ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcccc
Q 018957          208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKL  285 (348)
Q Consensus       208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~  285 (348)
                      +.+.|||.-+|-++-  +-+|.-++|.|++|+|||+++.+.+.+.++ ++.-|+|+..-|...++.+.+..   .|.- +
T Consensus         3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~~~~~---~g~d-~   77 (260)
T COG0467           3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLENARS---FGWD-L   77 (260)
T ss_pred             ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHHHHHH---cCCC-H
Confidence            567899999999999  889999999999999999999999998876 46789999999999998765543   2210 0


Q ss_pred             Ccc-cCCCeeEEEEecCCCCHH---H--HHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957          286 GDK-QADSKCALVYGQMNEPPG---A--RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV  343 (348)
Q Consensus       286 ~~~-~~~~rtvvV~~tsdep~~---~--r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A  343 (348)
                      ... +...-.++-..+...+..   .  -.....+.-.+-+.+.+ .+ ...+++||++.+...
T Consensus        78 ~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~-~~-~~~~ViDsi~~~~~~  139 (260)
T COG0467          78 EVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEK-EG-ADRVVIDSITELTLY  139 (260)
T ss_pred             HHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHH-hC-CCEEEEeCCchHhhh
Confidence            000 000111222222111110   0  12334456667777777 45 677889999976543

>cd01394 radB RadB

Probab=98.19  E-value=1.1e-05  Score=73.67  Aligned_cols=52  Identities=31%  Similarity=0.426  Sum_probs=43.3

Q ss_pred             eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEE
Q 018957          210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG  262 (348)
Q Consensus       210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~  262 (348)
                      +.|||..+|-++.  +.+|.=+.|+|++|+|||+++.+++.+.++. +.-++|.-
T Consensus         1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~   54 (218)
T cd01394           1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYID   54 (218)
T ss_pred             CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE
Confidence            4799999999996  7889999999999999999999999887643 34555653

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=98.08  E-value=7.3e-06  Score=75.45  Aligned_cols=124  Identities=21%  Similarity=0.245  Sum_probs=75.1

Q ss_pred             eecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCc
Q 018957          210 LVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGD  287 (348)
Q Consensus       210 l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~  287 (348)
                      +.|||.-+|-++  -+-+|.-++|.|++|+|||+|+.+++.+.+++.+.-++|+..-|..+++   +++|...|. ++.+
T Consensus         1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l---~~~~~s~g~-d~~~   76 (226)
T PF06745_consen    1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEEL---IENMKSFGW-DLEE   76 (226)
T ss_dssp             E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHH---HHHHHTTTS--HHH
T ss_pred             CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHH---HHHHHHcCC-cHHH
Confidence            369999999999  7889999999999999999999999988766436788999998877665   455655552 1100


Q ss_pred             ccCCCeeEEEEecCCCCHH-HHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHH
Q 018957          288 KQADSKCALVYGQMNEPPG-ARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF  340 (348)
Q Consensus       288 ~~~~~rtvvV~~tsdep~~-~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~  340 (348)
                      .....+ ..+.....+... ...-.-...-.+.+.+.+ .+. -.+++||++-+
T Consensus        77 ~~~~g~-l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~-~~~-~~vVIDsls~l  127 (226)
T PF06745_consen   77 YEDSGK-LKIIDAFPERIGWSPNDLEELLSKIREAIEE-LKP-DRVVIDSLSAL  127 (226)
T ss_dssp             HHHTTS-EEEEESSGGGST-TSCCHHHHHHHHHHHHHH-HTS-SEEEEETHHHH
T ss_pred             HhhcCC-EEEEecccccccccccCHHHHHHHHHHHHHh-cCC-CEEEEECHHHH
Confidence            000112 333332222110 001111123445555565 344 58889999988

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.97  E-value=7e-05  Score=68.90  Aligned_cols=121  Identities=21%  Similarity=0.207  Sum_probs=70.8

Q ss_pred             eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhc-----CCEEEEEEeeccchhHHHHHHHHHHcCc
Q 018957          210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGERTREGNDLYREMIESGV  282 (348)
Q Consensus       210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~-----~~~~V~~~IGER~rEv~~~~~e~~~~~v  282 (348)
                      +.||++.+|-++.  +.+|.-..|.|++|+|||+|+.+++.+.....     ..-++|.-..+ .-...++.+-++..+.
T Consensus         1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~-~~~~~rl~~~~~~~~~   79 (235)
T cd01123           1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG-TFRPERLVQIAERFGL   79 (235)
T ss_pred             CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC-CcCHHHHHHHHHHhcc
Confidence            4699999999987  88999999999999999999999987643221     24566665444 2122333333333331


Q ss_pred             cccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          283 IKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       283 ~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                      .   .+..+++..++-. .+   .+.....+  ..+=+++.+ .++--|+++||++.+.
T Consensus        80 ~---~~~~~~~i~~~~~-~~---~~~l~~~l--~~l~~~l~~-~~~~~liVIDSis~~~  128 (235)
T cd01123          80 D---PEEVLDNIYVARA-YN---SDHQLQLL--EELEAILIE-SSRIKLVIVDSVTALF  128 (235)
T ss_pred             C---hHhHhcCEEEEec-CC---HHHHHHHH--HHHHHHHhh-cCCeeEEEEeCcHHHH
Confidence            1   1123344333322 11   11211111  112234443 3377799999999764

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.95  E-value=1.1e-05  Score=65.05  Aligned_cols=93  Identities=23%  Similarity=0.189  Sum_probs=54.8

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCC
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP  304 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep  304 (348)
                      +++.+.|+|++|+|||+++..++.+..+.  ...++....+...+.......                   ......+..
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~   59 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-------------------LIIVGGKKA   59 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-------------------hhhhhccCC
Confidence            47899999999999999999988765321  123444444444433221111                   000111222


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957          305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV  343 (348)
Q Consensus       305 ~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A  343 (348)
                      ...+.......++.|++..     ..++++|++.++...
T Consensus        60 ~~~~~~~~~~~~~~~~~~~-----~~viiiDei~~~~~~   93 (148)
T smart00382       60 SGSGELRLRLALALARKLK-----PDVLILDEITSLLDA   93 (148)
T ss_pred             CCCHHHHHHHHHHHHHhcC-----CCEEEEECCcccCCH
Confidence            3444555556666666544     578999999887654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.94  E-value=8.5e-05  Score=70.70  Aligned_cols=58  Identities=21%  Similarity=0.277  Sum_probs=47.1

Q ss_pred             eecceeeeecee----------------ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccch
Q 018957          210 LVTGIKVVDLLA----------------PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR  268 (348)
Q Consensus       210 l~TGIkvID~l~----------------PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~r  268 (348)
                      +.|||+-+|-++                =+-+|.-+.|.|++|+|||+++.+++.+.++. +.-++|+..-|..+
T Consensus         4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~~   77 (259)
T TIGR03878         4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPAN   77 (259)
T ss_pred             ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCch
Confidence            469999999986                35699999999999999999999999887653 55677777655443

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.91  E-value=4.4e-05  Score=73.99  Aligned_cols=124  Identities=18%  Similarity=0.196  Sum_probs=76.5

Q ss_pred             cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec--cchhHHHHHHHH
Q 018957          207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDLYREM  277 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE--R~rEv~~~~~e~  277 (348)
                      ...+.||+..+|.++-  +-+|.-+.|+|++|+|||+|+.+++.+.+..     ..+.+||+-.-+  +.+.+.++   +
T Consensus        74 ~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~---~  150 (310)
T TIGR02236        74 IGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM---A  150 (310)
T ss_pred             CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH---H
Confidence            4568899999999987  7789999999999999999999998875421     124788988877  33343332   3


Q ss_pred             HHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCC-cEEEEEechhHHHhh
Q 018957          278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQ-DVLLFIDNIFRFTQV  343 (348)
Q Consensus       278 ~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~-dVLli~DslTR~A~A  343 (348)
                      ...+.   ..+...++..++-....+   .+..   .--.+.+++.+ .++ -=+||+||++-+-+.
T Consensus       151 ~~~gl---~~~~~~~~i~i~~~~~~~---~~~~---lld~l~~~i~~-~~~~~~lVVIDSisa~~r~  207 (310)
T TIGR02236       151 EARGL---DPDEVLKNIYVARAYNSN---HQML---LVEKAEDLIKE-LNNPVKLLIVDSLTSHFRA  207 (310)
T ss_pred             HHcCC---CHHHHhhceEEEecCCHH---HHHH---HHHHHHHHHHh-cCCCceEEEEecchHhhhH
Confidence            33332   111122343333322211   1211   12235677765 342 339999999976543

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.88  E-value=6.5e-05  Score=68.71  Aligned_cols=54  Identities=30%  Similarity=0.392  Sum_probs=43.8

Q ss_pred             eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhc-----CCEEEEEEe
Q 018957          210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGV  263 (348)
Q Consensus       210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~-----~~~~V~~~I  263 (348)
                      +.||+..+|-++-  +-+|+-..|+|++|+|||+|+.+++.+.+..+     ...++|+..
T Consensus         1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~   61 (226)
T cd01393           1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT   61 (226)
T ss_pred             CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence            4799999999884  88999999999999999999999988765432     145566554

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.88  E-value=7.4e-05  Score=69.30  Aligned_cols=71  Identities=20%  Similarity=0.233  Sum_probs=57.8

Q ss_pred             cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      .+.+.|||.-+|-++.  +-+|.-+.|.|++|+|||+|+.+++.+.++ ++..++|+..-+..++   +++++.+.|
T Consensus         4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~~~---~~~~~~~~g   76 (234)
T PRK06067          4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTSKS---YLKQMESVK   76 (234)
T ss_pred             ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCHHH---HHHHHHHCC
Confidence            4579999999999985  679999999999999999999999877655 4567888888666544   566676666

>TIGR02012 tigrfam_recA protein RecA

Probab=97.81  E-value=7.6e-05  Score=73.68  Aligned_cols=110  Identities=25%  Similarity=0.359  Sum_probs=75.6

Q ss_pred             ceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccc
Q 018957          208 QILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK  284 (348)
Q Consensus       208 e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~  284 (348)
                      +.+.||+..+|.++.   +-+|.-+.|+|++|+|||+|+.+++.+.++ .+..++|+-.=+..+.     ..+...|+- 
T Consensus        34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~~~~~-----~~a~~lGvd-  106 (321)
T TIGR02012        34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDP-----VYARKLGVD-  106 (321)
T ss_pred             ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccchhHH-----HHHHHcCCC-
Confidence            578999999999998   779999999999999999999999887755 4567777744333222     123444421 


Q ss_pred             cCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          285 LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       285 ~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                            .++  +++.+.+.  .++      ++.++|.+.. ++.--++|+||++-+.
T Consensus       107 ------~~~--l~v~~p~~--~eq------~l~~~~~li~-~~~~~lIVIDSv~al~  146 (321)
T TIGR02012       107 ------IDN--LLVSQPDT--GEQ------ALEIAETLVR-SGAVDIIVVDSVAALV  146 (321)
T ss_pred             ------HHH--eEEecCCC--HHH------HHHHHHHHhh-ccCCcEEEEcchhhhc
Confidence                  122  23333332  333      3556666665 5777799999999765

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK09354 recA recombinase A; Provisional

Probab=97.80  E-value=8.4e-05  Score=74.13  Aligned_cols=111  Identities=23%  Similarity=0.361  Sum_probs=79.0

Q ss_pred             cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957          207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI  283 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~  283 (348)
                      .+.+.||+..+|.++.   +-+|.-+.|+|++|+|||+|+.+++.+.++ .+..++|+-.=+..+.     +.+...|+-
T Consensus        38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s~~~-----~~a~~lGvd  111 (349)
T PRK09354         38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDP-----VYAKKLGVD  111 (349)
T ss_pred             CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchHH-----HHHHHcCCC
Confidence            4579999999999998   667888999999999999999999987654 4578888876554442     224444531


Q ss_pred             ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                             .++  +++.+.+.  .++      ++.+++.+.. ++.--|||+||++-+.
T Consensus       112 -------ld~--lli~qp~~--~Eq------~l~i~~~li~-s~~~~lIVIDSvaaL~  151 (349)
T PRK09354        112 -------IDN--LLVSQPDT--GEQ------ALEIADTLVR-SGAVDLIVVDSVAALV  151 (349)
T ss_pred             -------HHH--eEEecCCC--HHH------HHHHHHHHhh-cCCCCEEEEeChhhhc
Confidence                   123  33344332  333      3566777766 5888899999999665

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.73  E-value=0.00022  Score=65.67  Aligned_cols=68  Identities=24%  Similarity=0.362  Sum_probs=52.2

Q ss_pred             eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      +.|||.-+|-++.  +-+|.-+.|.|++|+|||+|+.+++.+.++ .+.-++|+...+..+++   .+.+.+.+
T Consensus         2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~~~~i---~~~~~~~g   71 (229)
T TIGR03881         2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEESRESI---IRQAAQFG   71 (229)
T ss_pred             cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCCHHHH---HHHHHHhC
Confidence            5799999999875  779999999999999999999998876654 34567788776655444   34444444

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.71  E-value=8.2e-05  Score=73.57  Aligned_cols=111  Identities=23%  Similarity=0.366  Sum_probs=77.2

Q ss_pred             cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957          207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI  283 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~  283 (348)
                      .+.+.||+..+|.++.   +-+|.=+-|+|++|+|||+|+.+++.+.++ .+..++|+-.=+....     +.+...|+-
T Consensus        33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~~~~~-----~~a~~lGvd  106 (325)
T cd00983          33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEHALDP-----VYAKKLGVD  106 (325)
T ss_pred             CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECccccHHH-----HHHHHcCCC
Confidence            4579999999999998   778889999999999999999999987654 4567788765333221     223444421


Q ss_pred             ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                             .++  +++.+.+.  .++      ++.+++.+.. ++.--|+|+||++-+.
T Consensus       107 -------~~~--l~v~~p~~--~eq------~l~i~~~li~-s~~~~lIVIDSvaal~  146 (325)
T cd00983         107 -------LDN--LLISQPDT--GEQ------ALEIADSLVR-SGAVDLIVVDSVAALV  146 (325)
T ss_pred             -------HHH--heecCCCC--HHH------HHHHHHHHHh-ccCCCEEEEcchHhhc
Confidence                   122  33333332  233      4566777776 5788899999999765

RecA couples ATP hydrolysis to DNA strand exchange.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=97.69  E-value=0.00031  Score=70.02  Aligned_cols=124  Identities=17%  Similarity=0.191  Sum_probs=77.4

Q ss_pred             ccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHh--h---cCCEEEEEEeec--cchhHHHHHHH
Q 018957          206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAK--A---HGGFSVFAGVGE--RTREGNDLYRE  276 (348)
Q Consensus       206 ~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~--~---~~~~~V~~~IGE--R~rEv~~~~~e  276 (348)
                      ....+.||++.+|-++-  +-+|.=.-|+|++|+|||+|+.+++.+.+.  .   .+..++|+-.-+  +.+.+.++.+.
T Consensus       104 ~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~  183 (344)
T PLN03187        104 SVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER  183 (344)
T ss_pred             cCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            45679999999999987  668899999999999999999999866532  1   124678887766  45555444333


Q ss_pred             HHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957          277 MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV  343 (348)
Q Consensus       277 ~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A  343 (348)
                      |   ++   ..++.+++  +.+....+ ...+....   ..+.+.+.+  ++-=|||+||++-+.++
T Consensus       184 ~---g~---d~~~~l~~--I~~~~~~~-~e~~~~~l---~~l~~~i~~--~~~~LvVIDSital~r~  236 (344)
T PLN03187        184 F---GM---DADAVLDN--IIYARAYT-YEHQYNLL---LGLAAKMAE--EPFRLLIVDSVIALFRV  236 (344)
T ss_pred             c---CC---ChhhhcCe--EEEecCCC-HHHHHHHH---HHHHHHHHh--cCCCEEEEeCcHHhhhc
Confidence            2   32   11123344  33333332 22222211   233344544  34458899999976554

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.69  E-value=0.0008  Score=63.39  Aligned_cols=67  Identities=22%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             cceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHH
Q 018957          207 QQILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDL  273 (348)
Q Consensus       207 ~e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~  273 (348)
                      ++-+.||+..+|-++ -+.+|.-..|.|++|+|||+++.+++.+.++.++.-++|.-.-+...+....
T Consensus        10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r   77 (271)
T cd01122          10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARR   77 (271)
T ss_pred             ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHH
Confidence            457789999999975 4778999999999999999999999988766545566677666666555443

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.67  E-value=0.00028  Score=73.12  Aligned_cols=72  Identities=21%  Similarity=0.327  Sum_probs=57.5

Q ss_pred             ccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       206 ~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      ..+.+.|||.-+|-++.  +-+|.-+.|.|++|+|||+|+.+++.+.++ ++.-++|+..-|..+++   ++.+...|
T Consensus       251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~~~~i---~~~~~~~g  324 (509)
T PRK09302        251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR-RGERCLLFAFEESRAQL---IRNARSWG  324 (509)
T ss_pred             ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCHHHH---HHHHHHcC
Confidence            46678999999999986  889999999999999999999999987765 45677888776665544   44555444

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.67  E-value=0.0003  Score=64.66  Aligned_cols=57  Identities=30%  Similarity=0.490  Sum_probs=47.5

Q ss_pred             cceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957          207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG  264 (348)
Q Consensus       207 ~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG  264 (348)
                      ++.+.||+.-+|-++  -+-+|.-..|.|++|+|||+++.+++.+.++. +.-++|+-.-
T Consensus         2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e   60 (225)
T PRK09361          2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTE   60 (225)
T ss_pred             CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECC
Confidence            467899999999999  57789999999999999999999999887653 4556676543

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.58  E-value=0.00036  Score=72.18  Aligned_cols=72  Identities=18%  Similarity=0.287  Sum_probs=60.1

Q ss_pred             ccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       206 ~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      ..+.+.|||.-+|-++-  +.+|.-++|.|++|+|||+|+.+++.+.++ ++.-++|+.--|..+++   ++.+..-|
T Consensus       241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i---~~~~~~lg  314 (484)
T TIGR02655       241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQL---LRNAYSWG  314 (484)
T ss_pred             cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHH---HHHHHHcC
Confidence            56789999999999884  789999999999999999999999988765 46788999888876665   45566655

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=97.53  E-value=0.00055  Score=67.28  Aligned_cols=126  Identities=17%  Similarity=0.133  Sum_probs=76.2

Q ss_pred             cccccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec--cchhHHHH
Q 018957          203 QATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDL  273 (348)
Q Consensus       203 R~~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE--R~rEv~~~  273 (348)
                      +......+.||++.+|-++-  +.+|.=..|+|++|+|||+|+.+++.+....     .+.-++|+-.-+  +.+.+.++
T Consensus        71 ~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~  150 (313)
T TIGR02238        71 KRKKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAI  150 (313)
T ss_pred             hhccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHH
Confidence            33445679999999999976  7789999999999999999999988654311     135678887655  24444433


Q ss_pred             HHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957          274 YREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       274 ~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~  342 (348)
                      .   .+.++   ..+..+++ +.+ .....  .++....  -..+.+.+.+  ++-=|||+||++-+.+
T Consensus       151 a---~~~g~---d~~~~l~~-i~~-~~~~~--~e~~~~~--l~~l~~~i~~--~~~~LvVIDSisal~r  205 (313)
T TIGR02238       151 A---ERFGV---DPDAVLDN-ILY-ARAYT--SEHQMEL--LDYLAAKFSE--EPFRLLIVDSIMALFR  205 (313)
T ss_pred             H---HHcCC---ChHHhcCc-EEE-ecCCC--HHHHHHH--HHHHHHHhhc--cCCCEEEEEcchHhhh
Confidence            3   33332   11123344 333 22222  2222211  1234455554  3445799999996644

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.53  E-value=0.00016  Score=67.55  Aligned_cols=69  Identities=23%  Similarity=0.339  Sum_probs=56.2

Q ss_pred             eeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          209 ILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       209 ~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      -+.|||.-+|-++.  +-+|.-++|.|++|+|||+|+.+++.+.++ .+..++|+...|..+++   ++.|.+.|
T Consensus         2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~i---~~~~~~~g   72 (237)
T TIGR03877         2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQV---RRNMAQFG   72 (237)
T ss_pred             ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHHH---HHHHHHhC
Confidence            36899999999875  779999999999999999999999887664 46789999998876665   44455544

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK04328 hypothetical protein; Provisional

Probab=97.49  E-value=0.0002  Score=67.66  Aligned_cols=70  Identities=24%  Similarity=0.325  Sum_probs=57.4

Q ss_pred             ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      +.+.|||.-+|-++.  +-+|.-++|.|++|+|||+|+.+++.+.++ .+.-++|+...|..+++   ++.+.+.|
T Consensus         3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~~~i---~~~~~~~g   74 (249)
T PRK04328          3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHPVQV---RRNMRQFG   74 (249)
T ss_pred             ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCHHHH---HHHHHHcC
Confidence            357899999999986  559999999999999999999999887654 36789999999988775   44555544

>PTZ00035 Rad51 protein; Provisional

Probab=97.49  E-value=0.00071  Score=67.12  Aligned_cols=127  Identities=17%  Similarity=0.175  Sum_probs=74.9

Q ss_pred             hcccccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec--cchhHHH
Q 018957          202 EQATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGND  272 (348)
Q Consensus       202 ~R~~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE--R~rEv~~  272 (348)
                      ++......+.||++.+|-++-  +-+|.-..|+|++|+|||+|+.+++.+....     .+.-++|+-.-+  +.+.+.+
T Consensus        92 ~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~  171 (337)
T PTZ00035         92 EARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ  171 (337)
T ss_pred             HhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHH
Confidence            344445789999999999985  6789999999999999999999887654310     234566765433  2333433


Q ss_pred             HHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957          273 LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       273 ~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~  342 (348)
                      +   +++.++.   .+..+++ +. +.....+ .......   ..+.+.+.+  ++--|||+||++-+.+
T Consensus       172 i---a~~~g~~---~~~~l~n-I~-~~~~~~~-e~~~~~l---~~~~~~l~~--~~~~lvVIDSital~r  227 (337)
T PTZ00035        172 I---AERFGLD---PEDVLDN-IA-YARAYNH-EHQMQLL---SQAAAKMAE--ERFALLIVDSATALFR  227 (337)
T ss_pred             H---HHHhCCC---hHhHhhc-eE-EEccCCH-HHHHHHH---HHHHHHhhc--cCccEEEEECcHHhhh
Confidence            3   3333421   1122344 22 2332221 2222111   123344443  5667999999997544

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.43  E-value=0.00093  Score=65.24  Aligned_cols=124  Identities=17%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec--cchhHHHHHHHH
Q 018957          207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDLYREM  277 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE--R~rEv~~~~~e~  277 (348)
                      ...+.||+.-+|-++.  +-+|.-..|+|++|+|||+++.+++.+.+..     .+..++|+-.-+  +.+.+.   +.+
T Consensus        81 ~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~---~~~  157 (317)
T PRK04301         81 VGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE---QMA  157 (317)
T ss_pred             CCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH---HHH
Confidence            3568899999999876  7789999999999999999999999775431     124678888766  233333   333


Q ss_pred             HHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957          278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV  343 (348)
Q Consensus       278 ~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A  343 (348)
                      ...+.   ..+..+++ +.++ .... ...+..   .--.+.+.+.+ ..+-=|||+||++-+-++
T Consensus       158 ~~~g~---~~~~~l~~-i~~~-~~~~-~~~~~~---~~~~l~~~i~~-~~~~~lvVIDSisa~~~~  213 (317)
T PRK04301        158 EALGL---DPDEVLDN-IHVA-RAYN-SDHQML---LAEKAEELIKE-GENIKLVIVDSLTAHFRA  213 (317)
T ss_pred             HHcCC---ChHhhhcc-EEEE-eCCC-HHHHHH---HHHHHHHHHhc-cCceeEEEEECchHHhhh
Confidence            33331   11123344 2232 2221 222221   11233333433 133349999999987544

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.38  E-value=0.002  Score=58.41  Aligned_cols=42  Identities=31%  Similarity=0.461  Sum_probs=34.7

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE  265 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE  265 (348)
                      +-+|+-+.|.|++|+|||+++.+++.+.++ ++.-++|+-.-+
T Consensus         9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~e~   50 (209)
T TIGR02237         9 VERGTITQIYGPPGSGKTNICMILAVNAAR-QGKKVVYIDTEG   50 (209)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence            568999999999999999999999988765 345678877754

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.35  E-value=0.0021  Score=59.12  Aligned_cols=65  Identities=23%  Similarity=0.351  Sum_probs=49.4

Q ss_pred             ceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          213 GIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       213 GIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      ||+-+|-++  -+-+|.-+.|.|++|+|||+++.+++.+.++. +.-++|+-.-+..+++   .+.+...+
T Consensus         1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l---~~~~~~~~   67 (224)
T TIGR03880         1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERI---LGYAKSKG   67 (224)
T ss_pred             CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHH---HHHHHHcC
Confidence            566677765  35589999999999999999999999876653 5678888888876555   44555555

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.33  E-value=0.00035  Score=72.32  Aligned_cols=70  Identities=20%  Similarity=0.210  Sum_probs=57.6

Q ss_pred             eeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          209 ILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       209 ~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      .+.|||.-+|-++.  +-+|.-.+|-|++|+|||+|+.+++.+.+++.+.-++|+..-|..+++   ++.+.+.|
T Consensus         2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l---~~~~~~~G   73 (484)
T TIGR02655         2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDI---IKNARSFG   73 (484)
T ss_pred             cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHH---HHHHHHcC
Confidence            46899999999987  779999999999999999999999887665446789999998887765   44455444

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=97.29  E-value=0.0011  Score=66.07  Aligned_cols=123  Identities=15%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec--cchhHHHHHHHH
Q 018957          207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDLYREM  277 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE--R~rEv~~~~~e~  277 (348)
                      ...+.||++.+|-++.  +-+|.=.-|+|++|+|||+|+.+++.+....     ....++|+-.-+  +.+.+.++.+.|
T Consensus       102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~  181 (342)
T PLN03186        102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERF  181 (342)
T ss_pred             cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHc
Confidence            4579999999999876  6788899999999999999999998765321     123678887766  444454443332


Q ss_pred             HHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957          278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV  343 (348)
Q Consensus       278 ~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A  343 (348)
                         ++   ..+..+++- .++...+  ...+....   ..+++++.+  ++=-|||+||++-+.+.
T Consensus       182 ---~~---~~~~~l~~i-~~~~~~~--~e~~~~ll---~~~~~~~~~--~~~~LIVIDSI~alfr~  233 (342)
T PLN03186        182 ---GL---NGADVLENV-AYARAYN--TDHQSELL---LEAASMMAE--TRFALMIVDSATALYRT  233 (342)
T ss_pred             ---CC---Chhhhccce-EEEecCC--HHHHHHHH---HHHHHHhhc--cCCCEEEEeCcHHHHHH
Confidence               31   111233442 3332221  22222221   123344443  45568999999976543

>PRK05973 replicative DNA helicase; Provisional

Probab=97.27  E-value=0.0031  Score=59.83  Aligned_cols=99  Identities=19%  Similarity=0.200  Sum_probs=63.6

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCC
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN  302 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsd  302 (348)
                      +-+|+=+.|.|.+|+|||+++.+++.+.++ ++.-++|...-|..+++   ++.+...|+-   .++...  .+.+...+
T Consensus        61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~~~i---~~R~~s~g~d---~~~~~~--~~~~d~~d  131 (237)
T PRK05973         61 LKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTEQDV---RDRLRALGAD---RAQFAD--LFEFDTSD  131 (237)
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCHHHH---HHHHHHcCCC---hHHhcc--ceEeecCC
Confidence            779999999999999999999999988775 35567788777775555   5667777642   111111  22333333


Q ss_pred             C-CHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          303 E-PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       303 e-p~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                      . .+.          .+.+++....+. =++|+|+++-+.
T Consensus       132 ~~~~~----------~ii~~l~~~~~~-~lVVIDsLq~l~  160 (237)
T PRK05973        132 AICAD----------YIIARLASAPRG-TLVVIDYLQLLD  160 (237)
T ss_pred             CCCHH----------HHHHHHHHhhCC-CEEEEEcHHHHh
Confidence            2 111          123444442344 389999998764

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=97.27  E-value=0.00071  Score=73.84  Aligned_cols=111  Identities=21%  Similarity=0.336  Sum_probs=77.9

Q ss_pred             cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957          207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI  283 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~  283 (348)
                      .+.+.||+..+|.++.   +-+|.-+.|+|++|+|||+|+.+++.+.++ .+..++|+-.-+..+.     +.+...|+-
T Consensus        38 v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~-~G~~v~yId~E~t~~~-----~~A~~lGvD  111 (790)
T PRK09519         38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHALDP-----DYAKKLGVD  111 (790)
T ss_pred             CceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchhH-----HHHHHcCCC
Confidence            3588999999999997   778999999999999999999998877654 3567888876665551     124445531


Q ss_pred             ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                             .++.  ++.+.+  +.++      ++.+++.+-. ++.=-|||+||++-+.
T Consensus       112 -------l~~l--lv~~~~--~~E~------~l~~i~~lv~-~~~~~LVVIDSI~aL~  151 (790)
T PRK09519        112 -------TDSL--LVSQPD--TGEQ------ALEIADMLIR-SGALDIVVIDSVAALV  151 (790)
T ss_pred             -------hhHe--EEecCC--CHHH------HHHHHHHHhh-cCCCeEEEEcchhhhc
Confidence                   1222  333433  2343      4555666655 5778899999999776

>TIGR00416 sms DNA repair protein RadA

Probab=97.24  E-value=0.00097  Score=68.72  Aligned_cols=71  Identities=21%  Similarity=0.327  Sum_probs=52.8

Q ss_pred             cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      .+.+.|||.-+|-++.  +.+|+-++|.|++|+|||+|+.+++.+.++. +.-++|+- ||-..  .++...+.+.+
T Consensus        73 ~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs-~EEs~--~qi~~ra~rlg  145 (454)
T TIGR00416        73 VPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVS-GEESL--QQIKMRAIRLG  145 (454)
T ss_pred             cCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEE-CcCCH--HHHHHHHHHcC
Confidence            3468999999999984  9999999999999999999999998887653 33456664 55332  23444444544

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.21  E-value=0.002  Score=64.89  Aligned_cols=71  Identities=25%  Similarity=0.440  Sum_probs=51.7

Q ss_pred             cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      .+.+.|||.-+|-++-  +.+|+-++|.|++|+|||+|+.+++.+.++. +.-++|+- ||...  .++...+.+.+
T Consensus        61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs-~EEs~--~qi~~Ra~rlg  133 (372)
T cd01121          61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVS-GEESP--EQIKLRADRLG  133 (372)
T ss_pred             cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-CCcCH--HHHHHHHHHcC
Confidence            3568999999999985  8899999999999999999999999887653 23455543 45332  23333444444

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.17  E-value=0.00056  Score=70.94  Aligned_cols=71  Identities=25%  Similarity=0.310  Sum_probs=59.5

Q ss_pred             ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      +.+.|||.-+|-++-  +-+|+-++|.|++|+|||+|+++++.+.++.++.-|+|+..-|..+++.+   .+...|
T Consensus        11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~---~~~~~g   83 (509)
T PRK09302         11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIR---NVASFG   83 (509)
T ss_pred             ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHH---HHHHcC
Confidence            577999999999974  88999999999999999999999998877654678899999998777644   454445

>PF05729 NACHT: NACHT domain

Probab=97.12  E-value=0.0017  Score=55.35  Aligned_cols=42  Identities=19%  Similarity=0.373  Sum_probs=30.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcC-----CEEEEEEeeccchh
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHG-----GFSVFAGVGERTRE  269 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~-----~~~V~~~IGER~rE  269 (348)
                      -+.|.|++|+|||+++..++....+.+.     .+++|...++....
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS   48 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence            3679999999999999999987765432     34566666655554

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.06  E-value=0.008  Score=52.89  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=34.0

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND  272 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~  272 (348)
                      +.|.|++|+|||+|+.+++.+.++ ++.-++|+..-|..+++.+
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~~~~   44 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEELIE   44 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHHHHH
Confidence            578999999999999999988765 3456778887777666644

A related protein is found in archaea.

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=97.03  E-value=0.0019  Score=63.97  Aligned_cols=110  Identities=24%  Similarity=0.351  Sum_probs=68.3

Q ss_pred             cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957          207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI  283 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~  283 (348)
                      .+.+.||+..+|..++   +-+|.=+=|+|+.++|||+|+..++.+..+ .+..|+|+-. |..=..    .-+...|+-
T Consensus        31 ~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~-~g~~~a~ID~-e~~ld~----~~a~~lGvd  104 (322)
T PF00154_consen   31 IEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-QGGICAFIDA-EHALDP----EYAESLGVD  104 (322)
T ss_dssp             S-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TT-EEEEEES-SS---H----HHHHHTT--
T ss_pred             cceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc-ccceeEEecC-cccchh----hHHHhcCcc
Confidence            4689999999999988   557888899999999999999999887533 4567888765 332221    113444531


Q ss_pred             ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHH
Q 018957          284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF  340 (348)
Q Consensus       284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~  340 (348)
                             .+|-+  +.+.+.  ++      -++.++|.+.. .|.-.++++||+...
T Consensus       105 -------l~rll--v~~P~~--~E------~al~~~e~lir-sg~~~lVVvDSv~al  143 (322)
T PF00154_consen  105 -------LDRLL--VVQPDT--GE------QALWIAEQLIR-SGAVDLVVVDSVAAL  143 (322)
T ss_dssp             -------GGGEE--EEE-SS--HH------HHHHHHHHHHH-TTSESEEEEE-CTT-
T ss_pred             -------ccceE--EecCCc--HH------HHHHHHHHHhh-cccccEEEEecCccc
Confidence                   24533  333221  23      36788899877 587778999997643

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.98  E-value=0.0028  Score=65.21  Aligned_cols=109  Identities=19%  Similarity=0.298  Sum_probs=69.3

Q ss_pred             ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcccc
Q 018957          208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKL  285 (348)
Q Consensus       208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~  285 (348)
                      +.+.|||.-+|-++.  +.+|+-+.|.|++|+|||+|+.+++.+.++. +.-++|+-.=|..+   ++.....+.+.-  
T Consensus        60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~---qi~~ra~rlg~~--  133 (446)
T PRK11823         60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESAS---QIKLRAERLGLP--  133 (446)
T ss_pred             CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHH---HHHHHHHHcCCC--
Confidence            458899999999885  8899999999999999999999999887643 34556665333322   333444444421  


Q ss_pred             CcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957          286 GDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       286 ~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~  342 (348)
                           .++ +.+....+   .++         +-+.+.+  .+--++|+||++.+..
T Consensus       134 -----~~~-l~~~~e~~---l~~---------i~~~i~~--~~~~lVVIDSIq~l~~  170 (446)
T PRK11823        134 -----SDN-LYLLAETN---LEA---------ILATIEE--EKPDLVVIDSIQTMYS  170 (446)
T ss_pred             -----hhc-EEEeCCCC---HHH---------HHHHHHh--hCCCEEEEechhhhcc
Confidence                 122 33332221   121         2223332  4556899999987643

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.96  E-value=0.0042  Score=61.09  Aligned_cols=122  Identities=19%  Similarity=0.190  Sum_probs=70.8

Q ss_pred             cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh--cC---CEEEEEEeec--cchhHHHHHHHH
Q 018957          207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA--HG---GFSVFAGVGE--RTREGNDLYREM  277 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~--~~---~~~V~~~IGE--R~rEv~~~~~e~  277 (348)
                      ...+.||++.+|-++.  +-+|.-+.|+|++|+|||+|+.+++.+....  .+   .-++|+-.-+  +.+.+   .+-+
T Consensus        75 ~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl---~~ia  151 (316)
T TIGR02239        75 VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL---LAIA  151 (316)
T ss_pred             cceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH---HHHH
Confidence            4569999999999876  6689999999999999999999998754321  11   3567765544  23323   2333


Q ss_pred             HHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957          278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       278 ~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~  342 (348)
                      ++.++-   .+..+++- .+....+  +.......   -.+.+.+.+  ++=-|||+||++-+.+
T Consensus       152 ~~~~~~---~~~~l~~i-~~~~~~~--~~~~~~~l---~~~~~~~~~--~~~~LvVIDSI~al~r  205 (316)
T TIGR02239       152 ERYGLN---PEDVLDNV-AYARAYN--TDHQLQLL---QQAAAMMSE--SRFALLIVDSATALYR  205 (316)
T ss_pred             HHcCCC---hHHhhccE-EEEecCC--hHHHHHHH---HHHHHhhcc--CCccEEEEECcHHHhh
Confidence            333421   11123332 2222221  22222211   123344443  4556899999997643

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PF13173 AAA_14: AAA domain

Probab=96.92  E-value=0.0027  Score=53.56  Aligned_cols=25  Identities=40%  Similarity=0.519  Sum_probs=21.0

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ++-+.|.|++|||||||+.+++...
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~   26 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDL   26 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3557899999999999999888653

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=96.84  E-value=0.0066  Score=57.09  Aligned_cols=97  Identities=16%  Similarity=0.293  Sum_probs=56.9

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHH-hhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCC
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN  302 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a-~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsd  302 (348)
                      ...+.++|.|.+|+|||+|+.+.+++.. +.+-+.++++-.+..... .++++.+.+.    ++...  ...     ...
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~-~~~~~~i~~~----l~~~~--~~~-----~~~   84 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL-EQLLEQILRQ----LGEPD--SSI-----SDP   84 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC-HHHHHHHHHH----HTCC---STS-----SCC
T ss_pred             CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc-cccccccccc----ccccc--ccc-----ccc
Confidence            4567889999999999999999886622 233467888888877665 4555554433    11110  000     111


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       303 ep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                      .....      ..-.+.+++++   ++.|||+||+....
T Consensus        85 ~~~~~------~~~~l~~~L~~---~~~LlVlDdv~~~~  114 (287)
T PF00931_consen   85 KDIEE------LQDQLRELLKD---KRCLLVLDDVWDEE  114 (287)
T ss_dssp             SSHHH------HHHHHHHHHCC---TSEEEEEEEE-SHH
T ss_pred             ccccc------ccccchhhhcc---ccceeeeeeecccc
Confidence            11111      23334566664   49999999986544

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.80  E-value=0.004  Score=58.32  Aligned_cols=68  Identities=18%  Similarity=0.175  Sum_probs=48.8

Q ss_pred             eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      +.+++.-+|-++.  +-+|..++|.|++|+|||+|+.+++.+.++ ++.-++|+...|...+.   ++.+.+.|
T Consensus         6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~~~~~~---~~~~~~~g   75 (230)
T PRK08533          6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQLTTTEF---IKQMMSLG   75 (230)
T ss_pred             EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHH---HHHHHHhC
Confidence            4456666666664  678999999999999999999888877654 34567888877666554   44444444

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.73  E-value=0.012  Score=52.14  Aligned_cols=29  Identities=34%  Similarity=0.478  Sum_probs=26.2

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .+|+-..|.|++|+|||+++.+++...+.
T Consensus        30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~   58 (193)
T PF13481_consen   30 PRGELTLIAGPPGSGKTTLALQLAAALAT   58 (193)
T ss_dssp             -TTSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            38999999999999999999999988775

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.72  E-value=0.0076  Score=57.48  Aligned_cols=127  Identities=22%  Similarity=0.220  Sum_probs=71.8

Q ss_pred             cccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeeccchhHHHHHHHH
Q 018957          205 TEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGERTREGNDLYREM  277 (348)
Q Consensus       205 ~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGER~rEv~~~~~e~  277 (348)
                      .-...+.||++.+|.++-  +-.|+=.=|+|++|+|||.|+.+++.+..-.     .+..+||.=.-- .-....+.+=.
T Consensus        15 ~~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~-~f~~~Rl~~i~   93 (256)
T PF08423_consen   15 KRWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG-TFSPERLQQIA   93 (256)
T ss_dssp             HTS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS-SS-HHHHHHHH
T ss_pred             hcCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC-CCCHHHHHHHh
Confidence            345789999999999983  6788888999999999999999998775311     234677774432 22222222222


Q ss_pred             HHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957          278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV  343 (348)
Q Consensus       278 ~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A  343 (348)
                      ++.+   +..++.++|.. ++--.|  ..+.. ....  .+.+.+.+  .+-=|||+||++-+-+.
T Consensus        94 ~~~~---~~~~~~l~~I~-v~~~~~--~~~l~-~~L~--~l~~~l~~--~~ikLIVIDSIaalfr~  148 (256)
T PF08423_consen   94 ERFG---LDPEEILDNIF-VIRVFD--LEELL-ELLE--QLPKLLSE--SKIKLIVIDSIAALFRS  148 (256)
T ss_dssp             HHTT---S-HHHHHHTEE-EEE-SS--HHHHH-HHHH--HHHHHHHH--SCEEEEEEETSSHHHHH
T ss_pred             hccc---cccchhhhcee-eeecCC--HHHHH-HHHH--HHHhhccc--cceEEEEecchHHHHHH
Confidence            2222   11122344433 333222  22222 2222  23344554  46679999999987653

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.47  E-value=0.02  Score=46.53  Aligned_cols=41  Identities=22%  Similarity=0.385  Sum_probs=28.1

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER  266 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER  266 (348)
                      .+.-+.|.|++|+|||+|+..++...... ...++++-+.+.
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~   58 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDL   58 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhh
Confidence            46679999999999999999888765321 233444444443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.42  E-value=0.016  Score=47.94  Aligned_cols=93  Identities=18%  Similarity=0.204  Sum_probs=50.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhh----cCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEec
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKA----HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ  300 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~----~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~t  300 (348)
                      +++-+.|.|++|+|||+++..++.+....    +..-++++-+.... ...++++++.+.-    +.+  .. .      
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l----~~~--~~-~------   68 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEAL----GLP--LK-S------   68 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHH----T-S--SS-S------
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHh----Ccc--cc-c------
Confidence            34557789999999999999988765321    02234555555555 5566666655442    110  01 1      


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHH
Q 018957          301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF  340 (348)
Q Consensus       301 sdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~  340 (348)
                       .. ...     ...-.+-+++..  .+.++|++|+.-.+
T Consensus        69 -~~-~~~-----~l~~~~~~~l~~--~~~~~lviDe~~~l   99 (131)
T PF13401_consen   69 -RQ-TSD-----ELRSLLIDALDR--RRVVLLVIDEADHL   99 (131)
T ss_dssp             -TS--HH-----HHHHHHHHHHHH--CTEEEEEEETTHHH
T ss_pred             -cC-CHH-----HHHHHHHHHHHh--cCCeEEEEeChHhc
Confidence             01 111     111344456665  33489999998876

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.26  E-value=0.022  Score=54.23  Aligned_cols=41  Identities=27%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      |+.|+|++|+|||+|+..++.+..+..  -+||....+...+.
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~~~n~~~   55 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITPEYNNEY   55 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEecCCchhh
Confidence            789999999999999999987653211  24555555444333

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=96.22  E-value=0.022  Score=56.45  Aligned_cols=98  Identities=13%  Similarity=0.147  Sum_probs=54.5

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCC
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHG-GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN  302 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~-~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsd  302 (348)
                      .+++.+.|.|++|+|||+++..+.++...... ...+|+-+-+... ...++.++.+.-    .......        ..
T Consensus        53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~l----~~~~~~~--------~~  119 (394)
T PRK00411         53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT-RYAIFSEIARQL----FGHPPPS--------SG  119 (394)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC-HHHHHHHHHHHh----cCCCCCC--------CC
Confidence            34567999999999999999988876533222 3456665544332 334455543321    0000000        00


Q ss_pred             CCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       303 ep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                      .+. ...     --.+.+++.. .++.++|++|++-.+.
T Consensus       120 ~~~-~~~-----~~~~~~~l~~-~~~~~viviDE~d~l~  151 (394)
T PRK00411        120 LSF-DEL-----FDKIAEYLDE-RDRVLIVALDDINYLF  151 (394)
T ss_pred             CCH-HHH-----HHHHHHHHHh-cCCEEEEEECCHhHhh
Confidence            011 111     1123355555 6888999999997765

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=96.13  E-value=0.0038  Score=55.87  Aligned_cols=38  Identities=37%  Similarity=0.532  Sum_probs=26.5

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEe
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV  263 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~I  263 (348)
                      .++-+.|+|++|+|||+|+.+++... +..+..++|.-.
T Consensus        19 ~~~~~~l~G~rg~GKTsLl~~~~~~~-~~~~~~~~y~~~   56 (234)
T PF01637_consen   19 PSQHILLYGPRGSGKTSLLKEFINEL-KEKGYKVVYIDF   56 (234)
T ss_dssp             -SSEEEEEESTTSSHHHHHHHHHHHC-T--EECCCHHCC
T ss_pred             cCcEEEEEcCCcCCHHHHHHHHHHHh-hhcCCcEEEEec
Confidence            46889999999999999999888754 221123455544

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=96.13  E-value=0.0062  Score=57.41  Aligned_cols=61  Identities=23%  Similarity=0.261  Sum_probs=43.6

Q ss_pred             eecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          210 LVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       210 l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      +.||++.+|-++ -+.+|+=..|-|.+|+|||+++.+++.+.+..++.-++|.-.-...+|+
T Consensus         2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l   63 (259)
T PF03796_consen    2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEEL   63 (259)
T ss_dssp             B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHH
T ss_pred             CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Confidence            579999999886 5888999999999999999999999999876543334444444344443

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=96.12  E-value=0.017  Score=51.93  Aligned_cols=87  Identities=18%  Similarity=0.224  Sum_probs=52.4

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc-chhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER-TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGA  307 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER-~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~  307 (348)
                      +.|.|++|+|||+++.+++..    .+.-++|+...+. ..|+.+-++..++.-        ...-.++      |    
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~H~~~R--------~~~w~t~------E----   59 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIARHRKRR--------PAHWRTI------E----   59 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHHHHHhC--------CCCceEe------e----
Confidence            579999999999999988754    2345677777765 344544443333221        1111111      1    


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhh
Q 018957          308 RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS  344 (348)
Q Consensus       308 r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~  344 (348)
                            ...-+.+.+.+..+.+ .+++|++|-|...+
T Consensus        60 ------~~~~l~~~l~~~~~~~-~VLIDclt~~~~n~   89 (169)
T cd00544          60 ------TPRDLVSALKELDPGD-VVLIDCLTLWVTNL   89 (169)
T ss_pred             ------cHHHHHHHHHhcCCCC-EEEEEcHhHHHHHh
Confidence                  1234555555422444 69999999997664

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=96.04  E-value=0.026  Score=55.29  Aligned_cols=100  Identities=14%  Similarity=0.253  Sum_probs=52.8

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC----E-EEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEE
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG----F-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY  298 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~----~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~  298 (348)
                      .+++.+.|.|++|+|||+++..+.++......+    + .+|+-+-+ .+.-.+++.++.+.- ...+.     +    .
T Consensus        38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~-~~~~~~~~~~i~~~l-~~~~~-----~----~  106 (365)
T TIGR02928        38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI-LDTLYQVLVELANQL-RGSGE-----E----V  106 (365)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC-CCCHHHHHHHHHHHH-hhcCC-----C----C
Confidence            345779999999999999998887654321111    3 45555433 233344555544331 00000     0    0


Q ss_pred             ecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       299 ~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                      .....+....+.      .+-+++.. .++.++|++|++-.+.
T Consensus       107 ~~~~~~~~~~~~------~l~~~l~~-~~~~~vlvIDE~d~L~  142 (365)
T TIGR02928       107 PTTGLSTSEVFR------RLYKELNE-RGDSLIIVLDEIDYLV  142 (365)
T ss_pred             CCCCCCHHHHHH------HHHHHHHh-cCCeEEEEECchhhhc
Confidence            001111111111      12244444 5888999999998874

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.02  E-value=0.027  Score=54.75  Aligned_cols=115  Identities=23%  Similarity=0.319  Sum_probs=71.3

Q ss_pred             ccccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEE-Eee-ccchhHHHHHHHHHH
Q 018957          204 ATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA-GVG-ERTREGNDLYREMIE  279 (348)
Q Consensus       204 ~~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~-~IG-ER~rEv~~~~~e~~~  279 (348)
                      ....+.+.||.+.+|-++-  +-+|.-.=|||+.|+|||+|+.+++.|..+ .++.++|+ .-| -+......+-..+  
T Consensus        36 ~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~-~g~~a~fIDtE~~l~p~r~~~l~~~~--  112 (279)
T COG0468          36 REDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK-PGGKAAFIDTEHALDPERAKQLGVDL--  112 (279)
T ss_pred             hhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhc-CCCeEEEEeCCCCCCHHHHHHHHHhh--
Confidence            3336889999999999887  336777889999999999999999987644 34466664 333 2222222211111  


Q ss_pred             cCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCC--cEEEEEechhHHHhh
Q 018957          280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQ--DVLLFIDNIFRFTQV  343 (348)
Q Consensus       280 ~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~--dVLli~DslTR~A~A  343 (348)
                                   ..-+++++.+..-        -++.+++++.. .+.  ==|+++||++-+-++
T Consensus       113 -------------~d~l~v~~~~~~e--------~q~~i~~~~~~-~~~~~i~LvVVDSvaa~~r~  156 (279)
T COG0468         113 -------------LDNLLVSQPDTGE--------QQLEIAEKLAR-SGAEKIDLLVVDSVAALVRA  156 (279)
T ss_pred             -------------hcceeEecCCCHH--------HHHHHHHHHHH-hccCCCCEEEEecCcccchh
Confidence                         1124455554422        23444444444 233  568899999876554

>TIGR00665 DnaB replicative DNA helicase

Probab=95.99  E-value=0.01  Score=60.29  Aligned_cols=63  Identities=22%  Similarity=0.228  Sum_probs=49.9

Q ss_pred             ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      .-+.||++.+|-++- +.+|+=+.|-|.+|+|||+++.+++.+.+..++.-++|.-.-+...++
T Consensus       176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i  239 (434)
T TIGR00665       176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL  239 (434)
T ss_pred             CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence            458899999999864 889999999999999999999999998775444444555555555554

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PRK09183 transposase/IS protein; Provisional

Probab=95.85  E-value=0.015  Score=55.51  Aligned_cols=27  Identities=41%  Similarity=0.543  Sum_probs=24.3

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.+|+.+.|+|++|+|||+|+.-+.+.
T Consensus        99 i~~~~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183         99 IERNENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            788999999999999999999877654

>PRK08181 transposase; Validated

Probab=95.85  E-value=0.016  Score=55.94  Aligned_cols=28  Identities=29%  Similarity=0.432  Sum_probs=24.0

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .+++.+.|+|++|+|||.|+.-+.+...
T Consensus       104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~  131 (269)
T PRK08181        104 AKGANLLLFGPPGGGKSHLAAAIGLALI  131 (269)
T ss_pred             hcCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            4788899999999999999988776543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=95.84  E-value=0.0082  Score=57.30  Aligned_cols=28  Identities=32%  Similarity=0.546  Sum_probs=25.0

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.|.+|+..||+|++|+|||||+.-++
T Consensus        27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~   54 (252)
T COG1124          27 SLEIERGETLGIVGESGSGKSTLARLLA   54 (252)
T ss_pred             eEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence            4689999999999999999999997554

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.84  E-value=0.018  Score=53.15  Aligned_cols=50  Identities=22%  Similarity=0.294  Sum_probs=41.0

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND  272 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~  272 (348)
                      +.+|+-+.|-|++|+|||+++.+++.+.+..++.-++|.-.-+..+++..
T Consensus        10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~   59 (242)
T cd00984          10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ   59 (242)
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence            67999999999999999999999998887654556677777777666643

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=95.81  E-value=0.088  Score=49.04  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=22.6

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      |.-..|+|++|+|||+|+.+++.+++
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~va   26 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMA   26 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHHh
Confidence            45568999999999999999998776

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=95.80  E-value=0.15  Score=44.68  Aligned_cols=43  Identities=26%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND  272 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~  272 (348)
                      +.+.|++|+|||+++..++...++ .+.-++++-+.-+..+..+
T Consensus         3 ~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~   45 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIE   45 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHH
Confidence            578999999999999988876544 2334555666655444433

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK12377 putative replication protein; Provisional

Probab=95.75  E-value=0.032  Score=53.27  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      +-+.|+|++|+|||.|+..+++...
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~  126 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLL  126 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999998877654

>PRK13342 recombination factor protein RarA; Reviewed

Probab=95.70  E-value=0.035  Score=56.23  Aligned_cols=67  Identities=18%  Similarity=0.307  Sum_probs=40.4

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCC
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNE  303 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsde  303 (348)
                      ..+.|+|++|+|||+|+..+.+..   +.++..+-.......++.++++.+.+...       ..++.++++--.+.
T Consensus        37 ~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~~~ir~ii~~~~~~~~-------~g~~~vL~IDEi~~  103 (413)
T PRK13342         37 SSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGVKDLREVIEEARQRRS-------AGRRTILFIDEIHR  103 (413)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccHHHHHHHHHHHHHhhh-------cCCceEEEEechhh
Confidence            468899999999999998776543   34555444444444455555555433210       11356777755543

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.68  E-value=0.012  Score=49.48  Aligned_cols=28  Identities=36%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      -+.+..|+.++|.|++|+|||||+..+.
T Consensus         9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           9 LVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            3567889999999999999999998664

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.67  E-value=0.047  Score=55.17  Aligned_cols=45  Identities=36%  Similarity=0.541  Sum_probs=34.5

Q ss_pred             cceeecceeeeece-eecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          207 QQILVTGIKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       207 ~e~l~TGIkvID~l-~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .+.+..-+.++|.. ..+.+|+-++++|++|+||||++..++....
T Consensus       117 ~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        117 QSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             HHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34555555666555 3467899999999999999999999987644

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=95.63  E-value=0.12  Score=47.60  Aligned_cols=116  Identities=15%  Similarity=0.159  Sum_probs=67.2

Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhh---------cCCE----EEEEEeecc---chhHHHHHHHHHH
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA---------HGGF----SVFAGVGER---TREGNDLYREMIE  279 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~---------~~~~----~V~~~IGER---~rEv~~~~~e~~~  279 (348)
                      .-|.-+....|...+|.|++|.||||++..+...+.-+         ...+    .||..++..   .+....|..|+++
T Consensus        19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~   98 (204)
T cd03282          19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSE   98 (204)
T ss_pred             EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHH
Confidence            44556677889999999999999999988765322111         1111    366666655   3344455566655


Q ss_pred             cCccccCcccCCCeeEEEEecCCCC-----HHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957          280 SGVIKLGDKQADSKCALVYGQMNEP-----PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       280 ~~v~~~~~~~~~~rtvvV~~tsdep-----~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~  342 (348)
                      ...+ +  ....++..++.   |||     +.++...   ..++.||+.+ .|.-+++ ......+++
T Consensus        99 ~~~i-l--~~~~~~~lvll---DE~~~gt~~~~~~~l---~~~il~~l~~-~~~~~i~-~TH~~~l~~  155 (204)
T cd03282          99 TAYI-L--DYADGDSLVLI---DELGRGTSSADGFAI---SLAILECLIK-KESTVFF-ATHFRDIAA  155 (204)
T ss_pred             HHHH-H--HhcCCCcEEEe---ccccCCCCHHHHHHH---HHHHHHHHHh-cCCEEEE-ECChHHHHH
Confidence            4322 1  01224566665   665     4444332   4568899998 5665554 444444443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.62  E-value=0.013  Score=52.88  Aligned_cols=33  Identities=30%  Similarity=0.408  Sum_probs=27.5

Q ss_pred             eeeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       215 kvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .+++-.+.+.+|..++|.|++|+|||||+..+.
T Consensus        14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~   46 (177)
T cd03222          14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILA   46 (177)
T ss_pred             EEEccCcEECCCCEEEEECCCCChHHHHHHHHH
Confidence            344445789999999999999999999997554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.62  E-value=0.061  Score=46.79  Aligned_cols=45  Identities=27%  Similarity=0.448  Sum_probs=26.1

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER  266 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER  266 (348)
                      ..-+.+.-+.|.|++|+|||+|+..+..+..+. ..+++..-+-..
T Consensus        19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~-~~~~~~~~~~~~   63 (185)
T PF13191_consen   19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER-GGYVISINCDDS   63 (185)
T ss_dssp             TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH-T--EEEEEEETT
T ss_pred             HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEEEecc
Confidence            455667789999999999999999988776543 344444444444

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=95.57  E-value=0.04  Score=56.12  Aligned_cols=31  Identities=29%  Similarity=0.388  Sum_probs=24.6

Q ss_pred             HHHHHHHhhhcCCCcEEEEEechhHHHhhhcc
Q 018957          315 GLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFI  346 (348)
Q Consensus       315 a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e  346 (348)
                      .+.-|+.++. .|+.++||+|.+-||=.++..
T Consensus        92 i~e~a~~~~~-~gr~tiLflDEIHRfnK~QQD  122 (436)
T COG2256          92 IIEEARKNRL-LGRRTILFLDEIHRFNKAQQD  122 (436)
T ss_pred             HHHHHHHHHh-cCCceEEEEehhhhcChhhhh
Confidence            4555677787 699999999999999777654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=95.51  E-value=0.16  Score=50.17  Aligned_cols=29  Identities=31%  Similarity=0.303  Sum_probs=25.3

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .+|+.+++.|++|+||||++..++...+.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~  140 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA  140 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            57899999999999999999998876543

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.48  E-value=0.014  Score=52.11  Aligned_cols=28  Identities=32%  Similarity=0.579  Sum_probs=24.8

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+..+.
T Consensus        12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~   39 (190)
T TIGR01166        12 NFAAERGEVLALLGANGAGKSTLLLHLN   39 (190)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999999997554

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=95.47  E-value=0.014  Score=51.85  Aligned_cols=28  Identities=25%  Similarity=0.437  Sum_probs=25.0

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+..+|+|++|+|||||+.-+.
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~   47 (178)
T cd03229          20 SLNIEAGEIVALLGPSGSGKSTLLRCIA   47 (178)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3688999999999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=95.47  E-value=0.014  Score=53.52  Aligned_cols=30  Identities=30%  Similarity=0.496  Sum_probs=26.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+||.++|+|++|+|||||+..++.
T Consensus        22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G   51 (229)
T cd03254          22 INFSIKPGETVAIVGPTGAGKTTLINLLMR   51 (229)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999999986653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.46  E-value=0.12  Score=42.18  Aligned_cols=22  Identities=41%  Similarity=0.508  Sum_probs=19.1

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ++|.|++|+|||+++..++...
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            5799999999999999887653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=95.45  E-value=0.014  Score=47.80  Aligned_cols=22  Identities=36%  Similarity=0.453  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +++|.|++|+||||++..+...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988764

...

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.43  E-value=0.016  Score=53.26  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-++-
T Consensus        19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G   48 (227)
T cd03260          19 ISLDIPKGEITALIGPSGCGKSTLLRLLNR   48 (227)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            336889999999999999999999976553

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=95.42  E-value=0.016  Score=52.56  Aligned_cols=29  Identities=31%  Similarity=0.549  Sum_probs=25.5

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-++
T Consensus        19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~   47 (210)
T cd03269          19 ISFSVEKGEIFGLLGPNGAGKTTTIRMIL   47 (210)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            44688999999999999999999997655

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.40  E-value=0.016  Score=52.78  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+-+|+.++|+|++|+|||||+.-|+
T Consensus        24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~   51 (218)
T cd03255          24 SLSIEKGEFVAIVGPSGSGKSTLLNILG   51 (218)
T ss_pred             EEEEcCCCEEEEEcCCCCCHHHHHHHHh
Confidence            3678899999999999999999997654

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.40  E-value=0.23  Score=45.53  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHH-cCcc--ccC---cc-----c------C
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE-SGVI--KLG---DK-----Q------A  290 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~-~~v~--~~~---~~-----~------~  290 (348)
                      -+.++|+.|+||||.+..++.........+.++.+=..|.--+..+ +.+-+ .++.  ...   ++     +      .
T Consensus         3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL-~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQL-KTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHH-HHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHH-HHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            4789999999999999999877654322334444333333322221 11111 1110  000   00     0      0


Q ss_pred             CCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          291 DSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       291 ~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                      .+.-+|++-|+-.++.........    .+++.....-.++|++|......
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el----~~~~~~~~~~~~~LVlsa~~~~~  128 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEEL----KKLLEALNPDEVHLVLSATMGQE  128 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHH----HHHHHHHSSSEEEEEEEGGGGGH
T ss_pred             cCCCEEEEecCCcchhhHHHHHHH----HHHhhhcCCccceEEEecccChH
Confidence            112367777776655544333322    23333334567888888777654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.38  E-value=0.017  Score=52.44  Aligned_cols=30  Identities=23%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus        19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~   48 (214)
T cd03292          19 GINISISAGEFVFLVGPSGAGKSTLLKLIY   48 (214)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344788999999999999999999997554

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.37  E-value=0.016  Score=52.46  Aligned_cols=29  Identities=24%  Similarity=0.373  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus        20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~   48 (211)
T cd03225          20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLN   48 (211)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            34678999999999999999999997554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=95.37  E-value=0.084  Score=50.12  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=25.3

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee---ccchhHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG---ERTREGNDLYRE  276 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG---ER~rEv~~~~~e  276 (348)
                      +.++||+|+|||||+.-+++..     +..+...-|   ++..+...++..
T Consensus        53 ~lf~GPPG~GKTTLA~IIA~e~-----~~~~~~~sg~~i~k~~dl~~il~~   98 (233)
T PF05496_consen   53 MLFYGPPGLGKTTLARIIANEL-----GVNFKITSGPAIEKAGDLAAILTN   98 (233)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHC-----T--EEEEECCC--SCHHHHHHHHT
T ss_pred             EEEECCCccchhHHHHHHHhcc-----CCCeEeccchhhhhHHHHHHHHHh
Confidence            6899999999999997544432     233333334   455555544433

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.35  E-value=0.017  Score=52.74  Aligned_cols=29  Identities=24%  Similarity=0.430  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+..++
T Consensus        24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~   52 (221)
T TIGR02211        24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLG   52 (221)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            34788999999999999999999997654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.34  E-value=0.016  Score=55.37  Aligned_cols=33  Identities=24%  Similarity=0.571  Sum_probs=26.4

Q ss_pred             eeee-eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          214 IKVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       214 IkvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      .+++ |.=+.+.+|+-+.|+|++|||||||+.-+
T Consensus        16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLrii   49 (248)
T COG1116          16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLI   49 (248)
T ss_pred             eEEeccceeEECCCCEEEEECCCCCCHHHHHHHH
Confidence            3444 33468999999999999999999998633

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=95.33  E-value=0.3  Score=45.73  Aligned_cols=102  Identities=18%  Similarity=0.137  Sum_probs=59.5

Q ss_pred             eeeeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC------------E-EEEEEeeccchh---HHHHHHHH
Q 018957          214 IKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG------------F-SVFAGVGERTRE---GNDLYREM  277 (348)
Q Consensus       214 IkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~------------~-~V~~~IGER~rE---v~~~~~e~  277 (348)
                      ...-|.-+.+.+|+++.|.|+.|.|||+++..+..+.-.++.+            + .||.-+|.+.+-   ...|..|+
T Consensus        19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~   98 (222)
T cd03287          19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVEL   98 (222)
T ss_pred             EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHH
Confidence            3456777778899999999999999999998776644322221            2 467777765431   11233444


Q ss_pred             HHcCccccCcccCCCeeEEEEecCCCC-----HHHHHHHHHHHHHHHHHhhh
Q 018957          278 IESGVIKLGDKQADSKCALVYGQMNEP-----PGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       278 ~~~~v~~~~~~~~~~rtvvV~~tsdep-----~~~r~~a~~~a~tiAEyfrd  324 (348)
                      .+-..+ +  +.+-+++.++.   |||     +...   ...+.++-|||.+
T Consensus        99 ~~~~~i-l--~~~~~~sLvll---DE~~~gT~~~d~---~~i~~~il~~l~~  141 (222)
T cd03287          99 SETSHI-L--SNCTSRSLVIL---DELGRGTSTHDG---IAIAYATLHYLLE  141 (222)
T ss_pred             HHHHHH-H--HhCCCCeEEEE---ccCCCCCChhhH---HHHHHHHHHHHHh
Confidence            433211 0  01224666666   443     1221   1124567899987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.33  E-value=0.017  Score=52.75  Aligned_cols=28  Identities=29%  Similarity=0.526  Sum_probs=24.8

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   47 (222)
T cd03224          20 SLTVPEGEIVALLGRNGAGKTTLLKTIM   47 (222)
T ss_pred             eEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence            3688999999999999999999997554

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.32  E-value=0.016  Score=48.60  Aligned_cols=28  Identities=25%  Similarity=0.436  Sum_probs=24.4

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+..+.
T Consensus         5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~   32 (137)
T PF00005_consen    5 SLEIKPGEIVAIVGPNGSGKSTLLKALA   32 (137)
T ss_dssp             EEEEETTSEEEEEESTTSSHHHHHHHHT
T ss_pred             EEEEcCCCEEEEEccCCCccccceeeec
Confidence            3578899999999999999999997554

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.30  E-value=0.017  Score=53.48  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus        21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~   49 (243)
T TIGR02315        21 INLNINPGEFVAIIGPSGAGKSTLLRCIN   49 (243)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            33688999999999999999999997554

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK05748 replicative DNA helicase; Provisional

Probab=95.30  E-value=0.021  Score=58.39  Aligned_cols=63  Identities=19%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      .-+.||+..+|-++- +.+|+=+.|-|.+|+|||+++.+++.+.+..++.-++|.-.-+...++
T Consensus       184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l  247 (448)
T PRK05748        184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL  247 (448)
T ss_pred             CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence            468999999999874 788999999999999999999999998765444444555555554444

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=95.30  E-value=0.088  Score=47.23  Aligned_cols=38  Identities=21%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE  269 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE  269 (348)
                      ++.|.|++|+|||+++..++.+.    +.-++|++.++-.++
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~~~~~   40 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQPFDD   40 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCCCChH
Confidence            68999999999999999886542    223678888876544

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.26  E-value=0.019  Score=52.36  Aligned_cols=29  Identities=24%  Similarity=0.421  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~   50 (216)
T TIGR00960        22 LNFHITKGEMVFLVGHSGAGKSTFLKLIL   50 (216)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678999999999999999999997554

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=95.26  E-value=0.019  Score=52.58  Aligned_cols=30  Identities=37%  Similarity=0.505  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+..+|+|++|+|||||+..|+
T Consensus        18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~   47 (220)
T cd03265          18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLT   47 (220)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            445788999999999999999999997554

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08116 hypothetical protein; Validated

Probab=95.25  E-value=0.072  Score=51.17  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=20.0

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      +.|.|++|+|||.|+..+++...
T Consensus       117 l~l~G~~GtGKThLa~aia~~l~  139 (268)
T PRK08116        117 LLLWGSVGTGKTYLAACIANELI  139 (268)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            88999999999999998776654

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.25  E-value=0.019  Score=51.77  Aligned_cols=30  Identities=27%  Similarity=0.445  Sum_probs=25.4

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   45 (206)
T TIGR03608        16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIG   45 (206)
T ss_pred             ceEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence            344678899999999999999999997554

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.24  E-value=0.02  Score=51.78  Aligned_cols=30  Identities=30%  Similarity=0.455  Sum_probs=25.5

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~   48 (200)
T PRK13540         19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIA   48 (200)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            344678999999999999999999997543

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.23  E-value=0.019  Score=51.84  Aligned_cols=27  Identities=22%  Similarity=0.165  Sum_probs=24.5

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      =+.+.+|++++|.|++|+|||||+..+
T Consensus        15 sl~i~~G~~~~l~G~nG~GKSTLl~~i   41 (176)
T cd03238          15 DVSIPLNVLVVVTGVSGSGKSTLVNEG   41 (176)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            368999999999999999999999755

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.22  E-value=0.019  Score=53.02  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=25.1

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-++
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   48 (241)
T cd03256          21 SLSINPGEFVALIGPSGAGKSTLLRCLN   48 (241)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999999997665

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=95.22  E-value=0.019  Score=52.89  Aligned_cols=30  Identities=30%  Similarity=0.492  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus        18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~   47 (230)
T TIGR03410        18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLM   47 (230)
T ss_pred             ceeeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            445789999999999999999999997554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=95.18  E-value=0.023  Score=51.58  Aligned_cols=31  Identities=19%  Similarity=0.416  Sum_probs=27.4

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +|.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus        15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~   45 (211)
T cd03298          15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIA   45 (211)
T ss_pred             cceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3777899999999999999999999997554

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=95.18  E-value=0.02  Score=53.10  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=25.9

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.-
T Consensus        21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (239)
T cd03296          21 VSLDIPSGELVALLGPSGSGKTTLLRLIAG   50 (239)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            346889999999999999999999976553

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=95.16  E-value=0.19  Score=46.88  Aligned_cols=23  Identities=43%  Similarity=0.631  Sum_probs=19.8

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-+.|.|++|+|||+|+..+...
T Consensus        44 ~~~~l~G~~G~GKTtl~~~l~~~   66 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLLKR   66 (269)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHh
Confidence            36889999999999999987654

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.16  E-value=0.027  Score=49.08  Aligned_cols=35  Identities=40%  Similarity=0.542  Sum_probs=21.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGN  271 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~  271 (348)
                      ||.|.|++++|||||+..+...      ++.++   .|-.|++.
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~------g~~~v---~E~ar~~~   35 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR------GYPVV---PEYAREII   35 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH------T-EEE-----TTHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc------CCeEE---eecHHHHH
Confidence            7899999999999999888653      33322   67766653

>PRK06526 transposase; Provisional

Probab=95.15  E-value=0.027  Score=53.81  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=24.1

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      -+++.+.|.|++|+|||+|+..+....+
T Consensus        96 ~~~~nlll~Gp~GtGKThLa~al~~~a~  123 (254)
T PRK06526         96 TGKENVVFLGPPGTGKTHLAIGLGIRAC  123 (254)
T ss_pred             hcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence            4688999999999999999998876554

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=95.15  E-value=0.02  Score=52.62  Aligned_cols=29  Identities=24%  Similarity=0.382  Sum_probs=25.5

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -+.+-+|.+++|.||+|+|||||+.+++.
T Consensus        23 sl~v~~Ge~iaitGPSG~GKStllk~va~   51 (223)
T COG4619          23 SLSVRAGEFIAITGPSGCGKSTLLKIVAS   51 (223)
T ss_pred             eeeecCCceEEEeCCCCccHHHHHHHHHh
Confidence            36788999999999999999999987654

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=95.14  E-value=0.021  Score=52.74  Aligned_cols=30  Identities=23%  Similarity=0.480  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~   47 (235)
T cd03261          18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIV   47 (235)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344689999999999999999999997654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.14  E-value=0.021  Score=52.63  Aligned_cols=29  Identities=28%  Similarity=0.484  Sum_probs=25.5

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      =+.+.+|+.++|.|++|+|||||+.-++.
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (233)
T cd03258          25 SLSVPKGEIFGIIGRSGAGKSTLIRCING   53 (233)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            37889999999999999999999986653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=95.13  E-value=0.021  Score=53.00  Aligned_cols=28  Identities=29%  Similarity=0.436  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-++
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~   49 (242)
T PRK11124         22 TLDCPQGETLVLLGPSGAGKSSLLRVLN   49 (242)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3788999999999999999999997654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=95.13  E-value=0.022  Score=51.66  Aligned_cols=28  Identities=21%  Similarity=0.368  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-++
T Consensus        20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~   47 (213)
T cd03262          20 DLTVKKGEVVVIIGPSGSGKSTLLRCIN   47 (213)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            3678999999999999999999997655

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=95.12  E-value=0.029  Score=56.80  Aligned_cols=62  Identities=26%  Similarity=0.323  Sum_probs=46.6

Q ss_pred             ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957          208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE  269 (348)
Q Consensus       208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE  269 (348)
                      .-+.||+..+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.+..++.-+.|.-.-....+
T Consensus       175 ~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~  237 (421)
T TIGR03600       175 TGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQ  237 (421)
T ss_pred             cceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHH
Confidence            45899999999987 599999999999999999999999998886333222334333333333

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.12  E-value=0.022  Score=51.82  Aligned_cols=28  Identities=29%  Similarity=0.449  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   47 (213)
T cd03259          20 SLTVEPGEFLALLGPSGCGKTTLLRLIA   47 (213)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            3678999999999999999999997654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.11  E-value=0.022  Score=51.53  Aligned_cols=27  Identities=37%  Similarity=0.400  Sum_probs=24.3

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+..+|.|++|+|||||+.-+.
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~   47 (205)
T cd03226          21 LDLYAGEIIALTGKNGAGKTTLAKILA   47 (205)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            578899999999999999999997554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.10  E-value=0.022  Score=51.81  Aligned_cols=31  Identities=29%  Similarity=0.356  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+..
T Consensus        20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (207)
T PRK13539         20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAG   50 (207)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3445889999999999999999999875543

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=95.10  E-value=0.021  Score=52.19  Aligned_cols=29  Identities=28%  Similarity=0.594  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+-+|+.++|.|++|+|||||+.-+.
T Consensus        24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   52 (228)
T cd03257          24 VSFSIKKGETLGLVGESGSGKSTLARAIL   52 (228)
T ss_pred             ceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678899999999999999999997554

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=95.09  E-value=0.022  Score=52.67  Aligned_cols=30  Identities=23%  Similarity=0.458  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+..++
T Consensus        20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~   49 (237)
T cd03252          20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQ   49 (237)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344678899999999999999999997665

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=95.09  E-value=0.022  Score=52.43  Aligned_cols=28  Identities=29%  Similarity=0.542  Sum_probs=25.0

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~   47 (232)
T cd03218          20 SLSVKQGEIVGLLGPNGAGKTTTFYMIV   47 (232)
T ss_pred             eeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence            3788999999999999999999997654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.09  E-value=0.021  Score=53.23  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=26.1

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.-
T Consensus        21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14247         21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNR   51 (250)
T ss_pred             cceeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3346788999999999999999999976543

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.07  E-value=0.023  Score=51.84  Aligned_cols=29  Identities=28%  Similarity=0.502  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+..+.
T Consensus        23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~   51 (220)
T cd03245          23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLA   51 (220)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            33678999999999999999999997554

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=95.07  E-value=0.023  Score=51.76  Aligned_cols=28  Identities=32%  Similarity=0.430  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~   52 (218)
T cd03266          25 SFTVKPGEVTGLLGPNGAGKTTTLRMLA   52 (218)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            4678899999999999999999997554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.06  E-value=0.021  Score=52.71  Aligned_cols=28  Identities=32%  Similarity=0.398  Sum_probs=25.0

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~   47 (236)
T cd03219          20 SFSVRPGEIHGLIGPNGAGKTTLFNLIS   47 (236)
T ss_pred             eEEecCCcEEEEECCCCCCHHHHHHHHc
Confidence            3678999999999999999999998654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK08118 topology modulation protein; Reviewed

Probab=95.06  E-value=0.021  Score=50.84  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=20.9

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|+.|+|++|+|||||+..+...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999988764

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.05  E-value=0.024  Score=52.26  Aligned_cols=30  Identities=27%  Similarity=0.456  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        20 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~   49 (234)
T cd03251          20 DISLDIPAGETVALVGPSGSGKSTLVNLIP   49 (234)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            334678899999999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=95.05  E-value=0.024  Score=52.57  Aligned_cols=28  Identities=29%  Similarity=0.408  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   48 (236)
T TIGR03864        21 SFTVRPGEFVALLGPNGAGKSTLFSLLT   48 (236)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3678899999999999999999997654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=95.03  E-value=0.026  Score=50.13  Aligned_cols=31  Identities=35%  Similarity=0.595  Sum_probs=26.4

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+..+|.|++|+|||||+..+.-
T Consensus        20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G   50 (178)
T cd03247          20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTG   50 (178)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3446788999999999999999999976654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.03  E-value=0.023  Score=53.11  Aligned_cols=29  Identities=24%  Similarity=0.429  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~   51 (253)
T PRK14267         23 VDLKIPQNGVFALMGPSGCGKSTLLRTFN   51 (253)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34788999999999999999999997554

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=95.02  E-value=0.023  Score=53.38  Aligned_cols=31  Identities=32%  Similarity=0.501  Sum_probs=26.6

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+..
T Consensus        24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (258)
T PRK11701         24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSA   54 (258)
T ss_pred             eeeEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4457899999999999999999999976553

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=95.01  E-value=0.022  Score=51.79  Aligned_cols=27  Identities=22%  Similarity=0.484  Sum_probs=24.3

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.++|.|++|+|||||+.-+.
T Consensus        20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~   46 (213)
T cd03235          20 FEVKPGEFLAIVGPNGAGKSTLLKAIL   46 (213)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence            578999999999999999999997554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=95.00  E-value=0.025  Score=51.29  Aligned_cols=30  Identities=30%  Similarity=0.379  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+-+|++++|+|++|+|||||+.-+.
T Consensus        18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~   47 (201)
T cd03231          18 GLSFTLAAGEALQVTGPNGSGKTTLLRILA   47 (201)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            444688899999999999999999987554

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=95.00  E-value=0.025  Score=51.30  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=25.5

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-+..
T Consensus        19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (213)
T cd03301          19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAG   48 (213)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            346789999999999999999999975553

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.00  E-value=0.024  Score=51.43  Aligned_cols=28  Identities=32%  Similarity=0.382  Sum_probs=24.5

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-|.
T Consensus        22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~   49 (214)
T TIGR02673        22 SLHIRKGEFLFLTGPSGAGKTTLLKLLY   49 (214)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3688999999999999999999997543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.99  E-value=0.027  Score=49.61  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=24.6

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.++|+|++|+|||||+.-+.
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~   47 (163)
T cd03216          21 LSVRRGEVHALLGENGAGKSTLMKILS   47 (163)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence            778999999999999999999997554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.97  E-value=0.026  Score=53.15  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+..++
T Consensus        32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~   59 (259)
T PRK14274         32 NLSIPENEVTAIIGPSGCGKSTFIKTLN   59 (259)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            3678899999999999999999997655

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=94.97  E-value=0.025  Score=52.44  Aligned_cols=30  Identities=30%  Similarity=0.536  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~   50 (241)
T PRK10895         21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVV   50 (241)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            344788999999999999999999997554

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=94.96  E-value=0.024  Score=52.45  Aligned_cols=30  Identities=20%  Similarity=0.352  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~   47 (243)
T TIGR01978        18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIA   47 (243)
T ss_pred             ccceEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344678999999999999999999997654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=94.94  E-value=0.025  Score=52.74  Aligned_cols=30  Identities=20%  Similarity=0.341  Sum_probs=26.5

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus        21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~   50 (250)
T PRK14240         21 KINLDIEENQVTALIGPSGCGKSTFLRTLN   50 (250)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            555789999999999999999999997654

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=94.94  E-value=0.025  Score=51.71  Aligned_cols=28  Identities=25%  Similarity=0.438  Sum_probs=24.8

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~   51 (220)
T cd03293          24 SLSVEEGEFVALVGPSGCGKSTLLRIIA   51 (220)
T ss_pred             eEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence            3678999999999999999999997554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=94.93  E-value=0.026  Score=52.61  Aligned_cols=29  Identities=24%  Similarity=0.394  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-++
T Consensus        22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   50 (250)
T PRK11264         22 IDLEVKPGEVVAIIGPSGSGKTTLLRCIN   50 (250)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34778999999999999999999997554

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=94.93  E-value=0.025  Score=51.10  Aligned_cols=31  Identities=26%  Similarity=0.517  Sum_probs=26.4

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+..+|.|++|+|||||+.-+..
T Consensus        23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G   53 (204)
T cd03250          23 DINLEVPKGELVAIVGPVGSGKSSLLSALLG   53 (204)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3447899999999999999999999976554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=94.91  E-value=0.027  Score=53.27  Aligned_cols=29  Identities=24%  Similarity=0.415  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-++
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   48 (255)
T PRK11248         20 INLTLESGELLVVLGPSGCGKTTLLNLIA   48 (255)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            34689999999999999999999997655

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=94.91  E-value=0.027  Score=52.25  Aligned_cols=31  Identities=19%  Similarity=0.369  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-++-
T Consensus        19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   49 (240)
T PRK09493         19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINK   49 (240)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3447789999999999999999999976553

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=94.91  E-value=0.027  Score=51.72  Aligned_cols=29  Identities=34%  Similarity=0.540  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+..++
T Consensus        29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~   57 (228)
T PRK10584         29 VELVVKRGETIALIGESGSGKSTLLAILA   57 (228)
T ss_pred             cEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            34778999999999999999999997654

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=94.90  E-value=0.024  Score=53.64  Aligned_cols=29  Identities=34%  Similarity=0.513  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+..+.
T Consensus        30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   58 (265)
T PRK10575         30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLG   58 (265)
T ss_pred             eeeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence            44788999999999999999999997554

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.90  E-value=0.027  Score=51.55  Aligned_cols=30  Identities=30%  Similarity=0.334  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|++++|.|++|+|||||+.-|+
T Consensus        29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~   58 (214)
T PRK13543         29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLA   58 (214)
T ss_pred             cceEEECCCCEEEEEcCCCCCHHHHHHHHh
Confidence            344778999999999999999999997654

>PRK07261 topology modulation protein; Provisional

Probab=94.88  E-value=0.025  Score=50.48  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|+.|+|.+|+|||||+..+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            58999999999999999988654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.88  E-value=0.028  Score=52.42  Aligned_cols=30  Identities=27%  Similarity=0.497  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus        21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   50 (241)
T PRK14250         21 DISVKFEGGAIYTIVGPSGAGKSTLIKLIN   50 (241)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            445788999999999999999999997554

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=94.87  E-value=0.028  Score=52.22  Aligned_cols=29  Identities=28%  Similarity=0.345  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus        20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~   48 (242)
T cd03295          20 LNLEIAKGEFLVLIGPSGSGKTTTMKMIN   48 (242)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            33788999999999999999999997554

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14974 cell division protein FtsY; Provisional

Probab=94.86  E-value=0.22  Score=49.71  Aligned_cols=28  Identities=29%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .++..+++.|++|+||||++..++....
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~  165 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK  165 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999998886543

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.85  E-value=0.028  Score=52.56  Aligned_cols=29  Identities=21%  Similarity=0.378  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        24 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~   52 (252)
T PRK14255         24 IDLDFNQNEITALIGPSGCGKSTYLRTLN   52 (252)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678999999999999999999997654

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=94.84  E-value=0.14  Score=51.15  Aligned_cols=86  Identities=26%  Similarity=0.375  Sum_probs=58.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEE-ecCCCCHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY-GQMNEPPG  306 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~-~tsdep~~  306 (348)
                      -++++|-.|+||||-+..+++...+  .+..|+.+-|...|-.+  +++|+..+-        +-.+-+|. ....+|+.
T Consensus       141 Vil~vGVNG~GKTTTIaKLA~~l~~--~g~~VllaA~DTFRAaA--iEQL~~w~e--------r~gv~vI~~~~G~DpAa  208 (340)
T COG0552         141 VILFVGVNGVGKTTTIAKLAKYLKQ--QGKSVLLAAGDTFRAAA--IEQLEVWGE--------RLGVPVISGKEGADPAA  208 (340)
T ss_pred             EEEEEecCCCchHhHHHHHHHHHHH--CCCeEEEEecchHHHHH--HHHHHHHHH--------HhCCeEEccCCCCCcHH
Confidence            4688999999999999999876643  36777878888888765  366665540        12344555 34667765


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCcEEEE
Q 018957          307 ARARVGLTGLTVAEHFRDAEGQDVLLF  333 (348)
Q Consensus       307 ~r~~a~~~a~tiAEyfrd~~G~dVLli  333 (348)
                          ++|-|+..|.   . +|.||||+
T Consensus       209 ----VafDAi~~Ak---a-r~~Dvvli  227 (340)
T COG0552         209 ----VAFDAIQAAK---A-RGIDVVLI  227 (340)
T ss_pred             ----HHHHHHHHHH---H-cCCCEEEE
Confidence                5566665544   4 79999875

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.84  E-value=0.035  Score=49.99  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=27.1

Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      ..|.=+.+.+|++++|.|++|+|||||+..++.
T Consensus        16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   48 (195)
T PRK13541         16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAG   48 (195)
T ss_pred             EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            344446789999999999999999999976543

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=94.84  E-value=0.029  Score=51.84  Aligned_cols=28  Identities=25%  Similarity=0.385  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~   56 (233)
T PRK11629         29 SFSIGEGEMMAIVGSSGSGKSTLLHLLG   56 (233)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            3688999999999999999999997554

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=94.83  E-value=0.028  Score=51.99  Aligned_cols=31  Identities=26%  Similarity=0.439  Sum_probs=26.3

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..++-
T Consensus        21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G   51 (238)
T cd03249          21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLER   51 (238)
T ss_pred             ceEEEecCCCEEEEEeCCCCCHHHHHHHHhc
Confidence            3446889999999999999999999976553

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=94.83  E-value=0.031  Score=49.37  Aligned_cols=31  Identities=29%  Similarity=0.453  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|++.+|.|++|+|||||+..+..
T Consensus        19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (166)
T cd03223          19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAG   49 (166)
T ss_pred             cCeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3447889999999999999999999976543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=94.82  E-value=0.029  Score=49.95  Aligned_cols=30  Identities=33%  Similarity=0.618  Sum_probs=25.3

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~   46 (180)
T cd03214          17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLA   46 (180)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            344678899999999999999999987554

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=94.81  E-value=0.03  Score=51.11  Aligned_cols=29  Identities=34%  Similarity=0.488  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~   49 (220)
T cd03263          21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLT   49 (220)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            34678999999999999999999997554

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=94.81  E-value=0.034  Score=55.25  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .+|.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus        14 ~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~ia   45 (352)
T PRK11144         14 CLTVNLTLPAQGITAIFGRSGAGKTSLINAIS   45 (352)
T ss_pred             EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            35778899999999999999999999997554

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=94.80  E-value=0.032  Score=49.39  Aligned_cols=29  Identities=34%  Similarity=0.595  Sum_probs=25.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~   47 (173)
T cd03230          19 ISLTVEKGEIYGLLGPNGAGKTTLIKIIL   47 (173)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            33678899999999999999999997554

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.79  E-value=0.03  Score=49.93  Aligned_cols=30  Identities=27%  Similarity=0.363  Sum_probs=25.7

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+..+|+|++|+|||||+.-+.-
T Consensus        19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G   48 (182)
T cd03215          19 VSFEVRAGEIVGIAGLVGNGQTELAEALFG   48 (182)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            447789999999999999999999976543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=94.78  E-value=0.031  Score=50.59  Aligned_cols=30  Identities=23%  Similarity=0.466  Sum_probs=25.7

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+..+|+|++|+|||||+..+.-
T Consensus        19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G   48 (208)
T cd03268          19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILG   48 (208)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            336788999999999999999999976653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=94.78  E-value=0.029  Score=51.84  Aligned_cols=30  Identities=27%  Similarity=0.555  Sum_probs=25.7

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|.|++|+|||||+..+.-
T Consensus         5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   34 (230)
T TIGR02770         5 LNLSLKRGEVLALVGESGSGKSLTCLAILG   34 (230)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            346788999999999999999999976654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=94.76  E-value=0.1  Score=49.38  Aligned_cols=28  Identities=21%  Similarity=0.132  Sum_probs=22.6

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-..+..+.++|++|||||+++.-+++.
T Consensus        38 ~~~~~~~vll~GppGtGKTtlA~~ia~~   65 (261)
T TIGR02881        38 TSKQVLHMIFKGNPGTGKTTVARILGKL   65 (261)
T ss_pred             CCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence            3455667899999999999999877654

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=94.76  E-value=0.034  Score=49.18  Aligned_cols=29  Identities=21%  Similarity=0.424  Sum_probs=25.2

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      =+.+.+|+.++|.|++|+|||||+.-++-
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G   50 (173)
T cd03246          22 SFSIEPGESLAIIGPSGSGKSTLARLILG   50 (173)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHh
Confidence            36788999999999999999999976553

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=94.76  E-value=0.031  Score=51.85  Aligned_cols=28  Identities=21%  Similarity=0.247  Sum_probs=25.0

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~   49 (242)
T TIGR03411        22 SLYVDPGELRVIIGPNGAGKTTMMDVIT   49 (242)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999999997655

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=94.75  E-value=0.34  Score=46.75  Aligned_cols=30  Identities=37%  Similarity=0.450  Sum_probs=25.4

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      -.+++.+.+.|++|+||||++..++...++
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~   98 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLKK   98 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            456788999999999999999999876644

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=94.75  E-value=0.03  Score=54.21  Aligned_cols=29  Identities=31%  Similarity=0.444  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+..+|+|++|+|||||+..+.
T Consensus        12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~   40 (302)
T TIGR01188        12 VNFKVREGEVFGFLGPNGAGKTTTIRMLT   40 (302)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            34689999999999999999999997655

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=94.73  E-value=0.031  Score=52.55  Aligned_cols=30  Identities=20%  Similarity=0.336  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-++
T Consensus        22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~la   51 (258)
T PRK14241         22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLN   51 (258)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            334778999999999999999999997655

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=94.73  E-value=0.031  Score=53.07  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~   59 (257)
T PRK11247         30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLA   59 (257)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344688999999999999999999997554

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.73  E-value=0.028  Score=56.34  Aligned_cols=35  Identities=29%  Similarity=0.499  Sum_probs=29.7

Q ss_pred             ceeeee-ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          213 GIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       213 GIkvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +..++| .=+.|.+|.-+.+.||+|||||||+..|+
T Consensus        17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA   52 (352)
T COG3842          17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA   52 (352)
T ss_pred             CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence            456665 66889999999999999999999997654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=94.73  E-value=0.03  Score=52.36  Aligned_cols=30  Identities=30%  Similarity=0.473  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+-+|+.++|+|++|+|||||+..+.
T Consensus        21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~   50 (253)
T TIGR02323        21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLA   50 (253)
T ss_pred             cceEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence            344778899999999999999999997554

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=94.73  E-value=0.032  Score=51.44  Aligned_cols=29  Identities=21%  Similarity=0.277  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-++
T Consensus        26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   54 (225)
T PRK10247         26 ISFSLRAGEFKLITGPSGCGKSTLLKIVA   54 (225)
T ss_pred             cEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            44788999999999999999999997554

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=94.73  E-value=0.031  Score=52.23  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=25.1

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   53 (253)
T PRK14242         26 SLEFEQNQVTALIGPSGCGKSTFLRCLN   53 (253)
T ss_pred             eEEEeCCCEEEEECCCCCCHHHHHHHHH
Confidence            3678999999999999999999998665

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=94.72  E-value=0.031  Score=52.25  Aligned_cols=30  Identities=30%  Similarity=0.507  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus        18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   47 (252)
T TIGR03005        18 GLNFSVAAGEKVALIGPSGSGKSTILRILM   47 (252)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344689999999999999999999997554

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=94.72  E-value=0.031  Score=55.06  Aligned_cols=34  Identities=29%  Similarity=0.502  Sum_probs=28.0

Q ss_pred             eeeece-eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          215 KVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       215 kvID~l-~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++|.+ +.+.+|+.++|+|++|+|||||+..+..
T Consensus        21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~G   55 (330)
T PRK15093         21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG   55 (330)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHc
Confidence            445444 5899999999999999999999976653

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.71  E-value=0.031  Score=52.36  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=25.0

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   54 (254)
T PRK14273         27 NIKILKNSITALIGPSGCGKSTFLRTLN   54 (254)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3688999999999999999999997664

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=94.71  E-value=0.032  Score=51.57  Aligned_cols=30  Identities=23%  Similarity=0.520  Sum_probs=26.6

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~   46 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIA   46 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            566889999999999999999999997554

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=94.68  E-value=0.033  Score=53.03  Aligned_cols=30  Identities=30%  Similarity=0.397  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus        25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~   54 (272)
T PRK15056         25 DASFTVPGGSIAALVGVNGSGKSTLFKALM   54 (272)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            445689999999999999999999997554

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=94.67  E-value=0.032  Score=50.96  Aligned_cols=27  Identities=22%  Similarity=0.461  Sum_probs=24.2

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+..+|+|++|+|||||+.-+.
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~   48 (218)
T cd03290          22 IRIPTGQLTMIVGQVGCGKSSLLLAIL   48 (218)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            578899999999999999999997554

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=94.65  E-value=0.034  Score=51.56  Aligned_cols=28  Identities=32%  Similarity=0.457  Sum_probs=24.7

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+..+.
T Consensus         5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   32 (230)
T TIGR01184         5 NLTIQQGEFISLIGHSGCGKSTLLNLIS   32 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3678899999999999999999997654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.65  E-value=0.03  Score=53.79  Aligned_cols=30  Identities=23%  Similarity=0.490  Sum_probs=25.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+..
T Consensus        26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~G   55 (286)
T PRK13646         26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINA   55 (286)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            336788999999999999999999976653

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=94.65  E-value=0.034  Score=50.91  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~   55 (224)
T TIGR02324        26 NVSLTVNAGECVALSGPSGAGKSTLLKSLY   55 (224)
T ss_pred             cceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            334789999999999999999999997554

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=94.64  E-value=0.033  Score=52.60  Aligned_cols=28  Identities=25%  Similarity=0.476  Sum_probs=24.8

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-|.
T Consensus        22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~   49 (258)
T PRK13548         22 SLTLRPGEVVAILGPNGAGKSTLLRALS   49 (258)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3678899999999999999999997554

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=94.64  E-value=0.033  Score=52.86  Aligned_cols=30  Identities=27%  Similarity=0.463  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-++
T Consensus        25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   54 (269)
T PRK11831         25 NISLTVPRGKITAIMGPSGIGKTTLLRLIG   54 (269)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            455789999999999999999999997554

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=94.64  E-value=0.034  Score=51.09  Aligned_cols=30  Identities=27%  Similarity=0.255  Sum_probs=25.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+..+|.|++|+|||||+.-+..
T Consensus         6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~G   35 (213)
T PRK15177          6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCG   35 (213)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            346899999999999999999999976553

>PRK10908 cell division protein FtsE; Provisional

Probab=94.64  E-value=0.035  Score=50.84  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=24.8

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-++
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~   49 (222)
T PRK10908         22 TFHMRPGEMAFLTGHSGAGKSTLLKLIC   49 (222)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3678999999999999999999997654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=94.63  E-value=0.035  Score=45.04  Aligned_cols=22  Identities=50%  Similarity=0.715  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..++..
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999988753

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.62  E-value=0.034  Score=52.64  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-++
T Consensus        41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~   68 (268)
T PRK14248         41 SMDIEKHAVTALIGPSGCGKSTFLRSIN   68 (268)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            3678899999999999999999997665

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=94.62  E-value=0.034  Score=51.83  Aligned_cols=30  Identities=20%  Similarity=0.351  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        23 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   52 (252)
T PRK14239         23 SVSLDFYPNEITALIGPSGSGKSTLLRSIN   52 (252)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            334778899999999999999999997664

>PRK09165 replicative DNA helicase; Provisional

Probab=94.62  E-value=0.047  Score=56.98  Aligned_cols=46  Identities=30%  Similarity=0.315  Sum_probs=40.9

Q ss_pred             ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhh
Q 018957          208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA  253 (348)
Q Consensus       208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~  253 (348)
                      .-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.++.
T Consensus       198 ~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~  244 (497)
T PRK09165        198 SGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKA  244 (497)
T ss_pred             CcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHh
Confidence            45889999999987 58899999999999999999999999988754

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.60  E-value=0.035  Score=51.79  Aligned_cols=29  Identities=21%  Similarity=0.345  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-++
T Consensus        22 i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~   50 (250)
T PRK14262         22 VTMKIFKNQITAIIGPSGCGKTTLLRSIN   50 (250)
T ss_pred             eeEeecCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678899999999999999999997554

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=94.60  E-value=0.035  Score=51.78  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   48 (247)
T TIGR00972        20 INLDIPKNQVTALIGPSGCGKSTLLRSLN   48 (247)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678999999999999999999997654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.59  E-value=0.036  Score=50.27  Aligned_cols=30  Identities=30%  Similarity=0.367  Sum_probs=26.1

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+..+|.|++|+|||||+.-+.
T Consensus        19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~   48 (204)
T PRK13538         19 GLSFTLNAGELVQIEGPNGAGKTSLLRILA   48 (204)
T ss_pred             cceEEECCCcEEEEECCCCCCHHHHHHHHh
Confidence            455789999999999999999999997554

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.58  E-value=0.034  Score=53.34  Aligned_cols=29  Identities=17%  Similarity=0.283  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+..+.
T Consensus        30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~   58 (289)
T PRK13645         30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTN   58 (289)
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence            33688999999999999999999997654

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=94.58  E-value=0.037  Score=50.78  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=24.3

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.++|.|++|+|||||+.-+.
T Consensus        35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~   61 (226)
T cd03248          35 FTLHPGEVTALVGPSGSGKSTVVALLE   61 (226)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            678899999999999999999997554

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=94.57  E-value=0.1  Score=52.92  Aligned_cols=25  Identities=36%  Similarity=0.558  Sum_probs=18.9

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhc
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAH  254 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~  254 (348)
                      +-+.|++|||||+|+.-++.+ ++.+
T Consensus       165 mIlWGppG~GKTtlArlia~t-sk~~  189 (554)
T KOG2028|consen  165 MILWGPPGTGKTTLARLIAST-SKKH  189 (554)
T ss_pred             eEEecCCCCchHHHHHHHHhh-cCCC
Confidence            457899999999999866654 3433

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.57  E-value=0.035  Score=52.90  Aligned_cols=29  Identities=21%  Similarity=0.364  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-++
T Consensus        26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~   54 (280)
T PRK13649         26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLN   54 (280)
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            33678899999999999999999997654

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=94.56  E-value=0.035  Score=54.70  Aligned_cols=31  Identities=26%  Similarity=0.426  Sum_probs=26.4

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-|..
T Consensus        33 ~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~g   63 (327)
T PRK11308         33 GVSFTLERGKTLAVVGESGCGKSTLARLLTM   63 (327)
T ss_pred             eeEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence            3457889999999999999999999976553

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=94.56  E-value=0.038  Score=50.07  Aligned_cols=31  Identities=35%  Similarity=0.663  Sum_probs=26.1

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+..
T Consensus        26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G   56 (207)
T cd03369          26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFR   56 (207)
T ss_pred             CceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3446788999999999999999999986543

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=94.54  E-value=0.036  Score=55.31  Aligned_cols=31  Identities=29%  Similarity=0.485  Sum_probs=26.6

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG   50 (353)
T PRK10851         20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAG   50 (353)
T ss_pred             EeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4557899999999999999999999976553

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=94.54  E-value=0.037  Score=51.51  Aligned_cols=30  Identities=27%  Similarity=0.471  Sum_probs=25.7

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|+|++|+|||||+..++-
T Consensus        40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~G   69 (236)
T cd03267          40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSG   69 (236)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            336788999999999999999999976653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=94.54  E-value=0.035  Score=53.74  Aligned_cols=29  Identities=34%  Similarity=0.551  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+..+.
T Consensus        23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~   51 (303)
T TIGR01288        23 LSFTIARGECFGLLGPNGAGKSTIARMLL   51 (303)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            34689999999999999999999997654

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=94.54  E-value=0.034  Score=45.37  Aligned_cols=21  Identities=43%  Similarity=0.627  Sum_probs=18.8

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+|.|.+|+|||||+..+...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988765

...

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.53  E-value=0.037  Score=52.46  Aligned_cols=30  Identities=23%  Similarity=0.381  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~   56 (269)
T PRK13648         27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMI   56 (269)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            444788999999999999999999997554

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.53  E-value=0.036  Score=51.51  Aligned_cols=28  Identities=25%  Similarity=0.327  Sum_probs=24.0

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+..++
T Consensus        15 sl~i~~Ge~~~l~G~sGsGKSTL~~~~i   42 (226)
T cd03270          15 DVDIPRNKLVVITGVSGSGKSSLAFDTI   42 (226)
T ss_pred             eeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence            3689999999999999999999974333

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=94.52  E-value=0.04  Score=49.67  Aligned_cols=29  Identities=31%  Similarity=0.448  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   47 (198)
T TIGR01189        19 LSFTLNAGEALQVTGPNGIGKTTLLRILA   47 (198)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            44678899999999999999999997554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=94.52  E-value=0.034  Score=52.66  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+..+.
T Consensus        26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~   54 (265)
T PRK10253         26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLS   54 (265)
T ss_pred             cceEECCCCEEEEECCCCCCHHHHHHHHc
Confidence            33788999999999999999999997554

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=94.52  E-value=0.038  Score=52.17  Aligned_cols=29  Identities=24%  Similarity=0.466  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+..|+
T Consensus        23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~   51 (251)
T PRK09544         23 VSLELKPGKILTLLGPNGAGKSTLVRVVL   51 (251)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            33778999999999999999999997654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=94.52  E-value=0.039  Score=52.37  Aligned_cols=29  Identities=21%  Similarity=0.375  Sum_probs=25.4

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      =+.+.+|+.++|.|++|+|||||+.-|.-
T Consensus        40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~G   68 (267)
T PRK14237         40 DMQFEKNKITALIGPSGSGKSTYLRSLNR   68 (267)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            36888999999999999999999976553

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=94.50  E-value=0.035  Score=50.47  Aligned_cols=31  Identities=26%  Similarity=0.419  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+-+|+..+|+|++|+|||||+..+.-
T Consensus        25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   55 (202)
T cd03233          25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALAN   55 (202)
T ss_pred             eEEEEECCCcEEEEECCCCCCHHHHHHHhcc
Confidence            3346788999999999999999999976543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.49  E-value=0.039  Score=51.63  Aligned_cols=28  Identities=14%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.+.+|+.++|.|++|+|||||+.-+.-
T Consensus        25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G   52 (252)
T PRK14256         25 MDFPENSVTAIIGPSGCGKSTVLRSINR   52 (252)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            5788999999999999999999976653

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=94.49  E-value=0.04  Score=50.48  Aligned_cols=28  Identities=25%  Similarity=0.447  Sum_probs=24.6

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+-+|+.++|+|++|+|||||+.-+.
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   47 (223)
T TIGR03740        20 SLTVPKNSVYGLLGPNGAGKSTLLKMIT   47 (223)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            3678899999999999999999997554

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=94.48  E-value=0.04  Score=50.80  Aligned_cols=31  Identities=26%  Similarity=0.488  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|.|++|+|||||+..|.-
T Consensus        19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G   49 (236)
T cd03253          19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFR   49 (236)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4446788999999999999999999976653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=94.47  E-value=0.039  Score=52.29  Aligned_cols=29  Identities=14%  Similarity=0.292  Sum_probs=25.6

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+..++
T Consensus        29 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   57 (264)
T PRK14243         29 VWLDIPKNQITAFIGPSGCGKSTILRCFN   57 (264)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            44778899999999999999999997665

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.47  E-value=0.041  Score=51.35  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   50 (250)
T PRK14266         21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLN   50 (250)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            444778899999999999999999997664

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=94.47  E-value=0.038  Score=51.65  Aligned_cols=30  Identities=23%  Similarity=0.328  Sum_probs=25.6

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus        23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~   52 (255)
T PRK11300         23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLT   52 (255)
T ss_pred             eeeeEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence            334688999999999999999999997554

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.46  E-value=0.039  Score=52.44  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=24.3

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.++|.|++|+|||||+.-++
T Consensus        30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~   56 (271)
T PRK13632         30 FEINEGEYVAILGHNGSGKSTISKILT   56 (271)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            688999999999999999999997554

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=94.46  E-value=0.048  Score=53.88  Aligned_cols=35  Identities=31%  Similarity=0.610  Sum_probs=30.9

Q ss_pred             eeeeece-eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          214 IKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       214 IkvID~l-~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++||.+ +.+.+|+.++|+|.+|+|||+++..++.
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~   53 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG   53 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHh
Confidence            6777765 7899999999999999999999987765

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=94.45  E-value=0.038  Score=52.31  Aligned_cols=30  Identities=30%  Similarity=0.603  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus        29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~   58 (265)
T TIGR02769        29 NVSLSIEEGETVGLLGRSGCGKSTLARLLL   58 (265)
T ss_pred             CceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            445789999999999999999999997554

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.44  E-value=0.039  Score=53.01  Aligned_cols=30  Identities=23%  Similarity=0.461  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-++
T Consensus        25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~   54 (287)
T PRK13641         25 NISFELEEGSFVALVGHTGSGKSTLMQHFN   54 (287)
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence            344788999999999999999999997655

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=94.44  E-value=0.041  Score=52.40  Aligned_cols=30  Identities=20%  Similarity=0.317  Sum_probs=25.7

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-|+-
T Consensus        43 vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~G   72 (271)
T PRK14238         43 INLDIHENEVTAIIGPSGCGKSTYIKTLNR   72 (271)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            336788999999999999999999976553

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=94.44  E-value=0.038  Score=50.07  Aligned_cols=31  Identities=23%  Similarity=0.413  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-++-
T Consensus        18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G   48 (200)
T cd03217          18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMG   48 (200)
T ss_pred             ccceEECCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3446899999999999999999999976543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=94.44  E-value=0.039  Score=51.99  Aligned_cols=29  Identities=17%  Similarity=0.329  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        32 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~   60 (260)
T PRK10744         32 INLDIAKNQVTAFIGPSGCGKSTLLRTFN   60 (260)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678899999999999999999997665

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.43  E-value=0.037  Score=52.54  Aligned_cols=29  Identities=34%  Similarity=0.535  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~   48 (271)
T PRK13638         20 LNLDFSLSPVTGLVGANGCGKSTLFMNLS   48 (271)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence            34678899999999999999999997554

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=94.42  E-value=0.04  Score=51.75  Aligned_cols=30  Identities=30%  Similarity=0.544  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~   50 (254)
T PRK10418         21 GVSLTLQRGRVLALVGGSGSGKSLTCAAAL   50 (254)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344789999999999999999999987554

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.42  E-value=0.041  Score=51.41  Aligned_cols=30  Identities=13%  Similarity=0.320  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus        21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~   50 (250)
T PRK14245         21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFN   50 (250)
T ss_pred             eeeEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence            344678999999999999999999997664

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=94.41  E-value=0.035  Score=51.19  Aligned_cols=27  Identities=33%  Similarity=0.688  Sum_probs=23.6

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+.+|+.++|+|++|+|||||+.-+..
T Consensus         2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G   28 (223)
T TIGR03771         2 SADKGELLGLLGPNGAGKTTLLRAILG   28 (223)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            577999999999999999999976553

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.40  E-value=0.043  Score=51.32  Aligned_cols=30  Identities=17%  Similarity=0.286  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus        23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~   52 (251)
T PRK14244         23 DINLDIYKREVTAFIGPSGCGKSTFLRCFN   52 (251)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            344689999999999999999999997554

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.40  E-value=0.042  Score=51.74  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus        30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~   59 (258)
T PRK14268         30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLN   59 (258)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344789999999999999999999997654

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=94.40  E-value=0.04  Score=54.96  Aligned_cols=29  Identities=28%  Similarity=0.465  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+..++
T Consensus        25 isl~i~~Ge~~~llGpsGsGKSTLLr~Ia   53 (351)
T PRK11432         25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVA   53 (351)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence            45788999999999999999999997554

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=94.40  E-value=0.041  Score=49.71  Aligned_cols=30  Identities=23%  Similarity=0.427  Sum_probs=25.7

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+..+|.|++|+|||||+.-++.
T Consensus        28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~G   57 (194)
T cd03213          28 VSGKAKPGELTAIMGPSGAGKSTLLNALAG   57 (194)
T ss_pred             ceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            346789999999999999999999976543

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=94.38  E-value=0.096  Score=47.24  Aligned_cols=49  Identities=29%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE  279 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~  279 (348)
                      +.+|+-+.|+|++|+|||.|+..+++...+ ++--+.|+       ...++++++++
T Consensus        44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~-------~~~~L~~~l~~   92 (178)
T PF01695_consen   44 IENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFI-------TASDLLDELKQ   92 (178)
T ss_dssp             -SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEE-------EHHHHHHHHHC
T ss_pred             cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEe-------ecCceeccccc
Confidence            347888999999999999999988876554 33334444       24555666543

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=94.37  E-value=0.044  Score=48.40  Aligned_cols=28  Identities=29%  Similarity=0.532  Sum_probs=24.7

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+..+|.|++|+|||||+.-+.
T Consensus        22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~   49 (171)
T cd03228          22 SLTIKPGEKVAIVGPSGSGKSTLLKLLL   49 (171)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            3678899999999999999999997554

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.37  E-value=0.043  Score=52.53  Aligned_cols=31  Identities=23%  Similarity=0.365  Sum_probs=26.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus        39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G   69 (276)
T PRK14271         39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNR   69 (276)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            5557889999999999999999999976653

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.36  E-value=0.043  Score=51.19  Aligned_cols=28  Identities=32%  Similarity=0.430  Sum_probs=24.7

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~   51 (252)
T PRK14272         24 NLDVQRGTVNALIGPSGCGKTTFLRAIN   51 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3678999999999999999999997554

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=94.36  E-value=0.041  Score=52.29  Aligned_cols=30  Identities=27%  Similarity=0.537  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-|.
T Consensus        30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   59 (268)
T PRK10419         30 NVSLSLKSGETVALLGRSGCGKSTLARLLV   59 (268)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344789999999999999999999997554

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.35  E-value=0.04  Score=49.98  Aligned_cols=28  Identities=36%  Similarity=0.510  Sum_probs=24.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+| .++|+|++|+|||||+..+.
T Consensus        19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~   46 (211)
T cd03264          19 VSLTLGPG-MYGLLGPNGAGKTTLMRILA   46 (211)
T ss_pred             eeEEEcCC-cEEEECCCCCCHHHHHHHHh
Confidence            34678889 99999999999999997665

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=94.34  E-value=0.035  Score=52.77  Aligned_cols=28  Identities=32%  Similarity=0.538  Sum_probs=23.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +..+.+|++++|.|++|+|||||+.-+.
T Consensus        20 i~~i~~Ge~~~IvG~nGsGKSTLlk~l~   47 (255)
T cd03236          20 LPVPREGQVLGLVGPNGIGKSTALKILA   47 (255)
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHh
Confidence            3348899999999999999999997554

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=94.34  E-value=0.035  Score=57.52  Aligned_cols=31  Identities=26%  Similarity=0.526  Sum_probs=26.3

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+-+|++++|.|++|+|||||+.-+..
T Consensus       353 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g  383 (529)
T TIGR02868       353 GVSLDLPPGERVAILGPSGSGKSTLLMLLTG  383 (529)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3447899999999999999999999975543

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=94.33  E-value=0.041  Score=54.92  Aligned_cols=30  Identities=27%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..|+
T Consensus        22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~ia   51 (356)
T PRK11650         22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVA   51 (356)
T ss_pred             eeeEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence            355789999999999999999999997554

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=94.33  E-value=0.045  Score=49.90  Aligned_cols=31  Identities=19%  Similarity=0.399  Sum_probs=27.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.-
T Consensus        16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   46 (213)
T TIGR01277        16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAG   46 (213)
T ss_pred             eeEEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence            5568899999999999999999999976653

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK08760 replicative DNA helicase; Provisional

Probab=94.33  E-value=0.054  Score=56.29  Aligned_cols=46  Identities=24%  Similarity=0.218  Sum_probs=40.2

Q ss_pred             ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhh
Q 018957          208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA  253 (348)
Q Consensus       208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~  253 (348)
                      .-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.+.+..
T Consensus       210 ~Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~  256 (476)
T PRK08760        210 TGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK  256 (476)
T ss_pred             CcccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh
Confidence            34789999999986 48889999999999999999999999988753

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=94.31  E-value=0.044  Score=50.43  Aligned_cols=30  Identities=23%  Similarity=0.453  Sum_probs=26.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-+..
T Consensus        26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G   55 (226)
T cd03234          26 VSLHVESGQVMAILGSSGSGKTTLLDAISG   55 (226)
T ss_pred             ceEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999999999999986653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=94.31  E-value=0.043  Score=54.24  Aligned_cols=31  Identities=23%  Similarity=0.494  Sum_probs=27.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus        39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G   69 (331)
T PRK15079         39 GVTLRLYEGETLGVVGESGCGKSTFARAIIG   69 (331)
T ss_pred             eEEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4567899999999999999999999976653

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.31  E-value=0.045  Score=51.24  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=25.0

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+..+|.|++|+|||||+.-+.
T Consensus        26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   53 (253)
T PRK14261         26 TISIPKNRVTALIGPSGCGKSTLLRCFN   53 (253)
T ss_pred             EEEECCCcEEEEECCCCCCHHHHHHHHh
Confidence            3688999999999999999999997664

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=94.30  E-value=0.047  Score=50.77  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=24.4

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.++|.|++|+|||||+.-|.
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~   47 (237)
T TIGR00968        21 LEVPTGSLVALLGPSGSGKSTLLRIIA   47 (237)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            579999999999999999999987554

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=94.29  E-value=0.042  Score=50.86  Aligned_cols=28  Identities=32%  Similarity=0.474  Sum_probs=24.8

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   52 (237)
T PRK11614         25 SLHINQGEIVTLIGANGAGKTTLLGTLC   52 (237)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence            3788999999999999999999997554

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=94.26  E-value=0.045  Score=54.60  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..|+
T Consensus        22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~ia   51 (353)
T TIGR03265        22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIA   51 (353)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            355788899999999999999999997554

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=94.24  E-value=0.045  Score=51.54  Aligned_cols=29  Identities=28%  Similarity=0.478  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~   51 (262)
T PRK09984         23 VDLNIHHGEMVALLGPSGSGKSTLLRHLS   51 (262)
T ss_pred             ceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            34678899999999999999999997554

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.24  E-value=0.047  Score=50.88  Aligned_cols=28  Identities=29%  Similarity=0.363  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+..+|+|++|+|||||+.-+.
T Consensus        23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~   50 (249)
T PRK14253         23 NLPIPARQVTALIGPSGCGKSTLLRCLN   50 (249)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999999997654

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.24  E-value=0.048  Score=50.87  Aligned_cols=30  Identities=20%  Similarity=0.375  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~   49 (246)
T PRK14269         20 DINMQIEQNKITALIGASGCGKSTFLRCFN   49 (246)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            444788899999999999999999997554

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.24  E-value=0.2  Score=51.65  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=23.1

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .++..+.+.|++|+||||++..++...
T Consensus       221 ~~~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        221 NQRKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356679999999999999999998654

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=94.24  E-value=0.13  Score=49.60  Aligned_cols=96  Identities=21%  Similarity=0.341  Sum_probs=50.3

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccc-----cCcccCCCeeEEEE
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK-----LGDKQADSKCALVY  298 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~-----~~~~~~~~rtvvV~  298 (348)
                      ..|+-+++.|++|+|||+++.+.+.+.  .+..+.+. -+=-....-...+.++.|..+-+     ++. ...++.++++
T Consensus        31 ~~~~pvLl~G~~GtGKT~li~~~l~~l--~~~~~~~~-~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP-~~~k~lv~fi  106 (272)
T PF12775_consen   31 SNGRPVLLVGPSGTGKTSLIQNFLSSL--DSDKYLVI-TINFSAQTTSNQLQKIIESKLEKRRGRVYGP-PGGKKLVLFI  106 (272)
T ss_dssp             HCTEEEEEESSTTSSHHHHHHHHHHCS--TTCCEEEE-EEES-TTHHHHHHHHCCCTTECECTTEEEEE-ESSSEEEEEE
T ss_pred             HcCCcEEEECCCCCchhHHHHhhhccC--Ccccccee-EeeccCCCCHHHHHHHHhhcEEcCCCCCCCC-CCCcEEEEEe
Confidence            468889999999999999999887543  12232221 11112223333345555544322     111 1345778888


Q ss_pred             ecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957          299 GQMNEPPGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       299 ~tsdep~~~r~~a~~~a~tiAEyfrd  324 (348)
                      ---|.|..+.|-+-. .+.+=..+.|
T Consensus       107 DDlN~p~~d~ygtq~-~iElLRQ~i~  131 (272)
T PF12775_consen  107 DDLNMPQPDKYGTQP-PIELLRQLID  131 (272)
T ss_dssp             ETTT-S---TTS--H-HHHHHHHHHH
T ss_pred             cccCCCCCCCCCCcC-HHHHHHHHHH
Confidence            888888877765544 2344444444

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.23  E-value=0.05  Score=52.62  Aligned_cols=48  Identities=29%  Similarity=0.545  Sum_probs=35.7

Q ss_pred             eeeee-ceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEE
Q 018957          214 IKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG  262 (348)
Q Consensus       214 IkvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~  262 (348)
                      ++++| .=+.|.+|..+||+|.+|+|||||...++. .-+...+-+.|-+
T Consensus        26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~-L~~pt~G~i~f~g   74 (268)
T COG4608          26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG-LEEPTSGEILFEG   74 (268)
T ss_pred             eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHc-CcCCCCceEEEcC
Confidence            46666 668999999999999999999999876654 2232334555553

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.22  E-value=0.053  Score=46.96  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=26.8

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -|.-+.+.+|+..+|.|++|+|||||+.-+..
T Consensus        16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g   47 (157)
T cd00267          16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG   47 (157)
T ss_pred             eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34557788999999999999999999976543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.22  E-value=0.046  Score=51.96  Aligned_cols=30  Identities=27%  Similarity=0.498  Sum_probs=26.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+-+|+.++|.|++|+|||||+..+.-
T Consensus        32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   61 (269)
T PRK14259         32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNR   61 (269)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            347899999999999999999999976653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=94.22  E-value=0.046  Score=52.16  Aligned_cols=30  Identities=33%  Similarity=0.380  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|++++|.|++|+|||||+.-++
T Consensus        42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~   71 (264)
T PRK13546         42 DISLKAYEGDVIGLVGINGSGKSTLSNIIG   71 (264)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            455689999999999999999999997554

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.22  E-value=0.23  Score=52.59  Aligned_cols=32  Identities=44%  Similarity=0.707  Sum_probs=27.5

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      -++.+|+.++|.|+.|+||||++..++...+.
T Consensus       345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~  376 (559)
T PRK12727        345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAA  376 (559)
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999988876544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.21  E-value=0.043  Score=51.90  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=22.7

Q ss_pred             eecccCceeEeecCCCCcHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      +.+.+|+.+.|+||+|+|||||+.
T Consensus        23 l~v~~Gevv~iiGpSGSGKSTlLR   46 (240)
T COG1126          23 LSVEKGEVVVIIGPSGSGKSTLLR   46 (240)
T ss_pred             eeEcCCCEEEEECCCCCCHHHHHH
Confidence            579999999999999999999996

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=94.21  E-value=0.043  Score=54.13  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=27.6

Q ss_pred             eeeec-eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          215 KVVDL-LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       215 kvID~-l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++|. =+.+.+|+.++|+|++|+|||||+.-++.
T Consensus        30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~G   64 (330)
T PRK09473         30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMG   64 (330)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence            34433 47899999999999999999999976653

>PHA02542 41 41 helicase; Provisional

Probab=94.21  E-value=0.052  Score=56.42  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=47.8

Q ss_pred             cceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       207 ~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      ..-+.||+.-+|-++  -+.+|+=+.|-|.+|+|||+++.+++.+.++. +.-++|.-.-++..++
T Consensus       169 ~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~~~ql  233 (473)
T PHA02542        169 ANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMAEEVI  233 (473)
T ss_pred             CCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHH
Confidence            356889999999998  48899999999999999999999999988743 2223344444444433

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.20  E-value=0.048  Score=52.46  Aligned_cols=30  Identities=17%  Similarity=0.252  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~   86 (286)
T PRK14275         57 KVNADILSKYVTAIIGPSGCGKSTFLRAIN   86 (286)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            455689999999999999999999997655

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=94.19  E-value=0.049  Score=50.31  Aligned_cols=30  Identities=37%  Similarity=0.596  Sum_probs=25.6

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+-+|+.++|.|++|+|||||+.-++.
T Consensus        41 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   70 (224)
T cd03220          41 VSFEVPRGERIGLIGRNGAGKSTLLRLLAG   70 (224)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            336899999999999999999999975543

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.19  E-value=0.05  Score=50.79  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~   51 (251)
T PRK14251         23 ISLDFEEKELTALIGPSGCGKSTFLRCLN   51 (251)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678899999999999999999997554

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.19  E-value=0.047  Score=52.58  Aligned_cols=30  Identities=30%  Similarity=0.499  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~   53 (288)
T PRK13643         24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLN   53 (288)
T ss_pred             eeEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            555789999999999999999999997554

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=94.19  E-value=0.049  Score=51.80  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus        42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~   71 (269)
T cd03294          42 DVSLDVREGEIFVIMGLSGSGKSTLLRCIN   71 (269)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344788999999999999999999997554

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=94.18  E-value=0.047  Score=52.31  Aligned_cols=30  Identities=33%  Similarity=0.515  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~la   48 (272)
T PRK13547         19 DLSLRIEPGRVTALLGRNGAGKSTLLKALA   48 (272)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            334679999999999999999999997554

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.17  E-value=0.05  Score=50.86  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=24.7

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|.|++|+|||||+.-++
T Consensus        24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~   51 (251)
T PRK14270         24 NLPIYENKITALIGPSGCGKSTFLRCLN   51 (251)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            3678899999999999999999997654

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=94.17  E-value=0.047  Score=53.76  Aligned_cols=30  Identities=23%  Similarity=0.548  Sum_probs=26.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-++.
T Consensus        26 vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~G   55 (326)
T PRK11022         26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMG   55 (326)
T ss_pred             eEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence            347999999999999999999999976654

>PRK05595 replicative DNA helicase; Provisional

Probab=94.17  E-value=0.064  Score=54.97  Aligned_cols=62  Identities=16%  Similarity=0.270  Sum_probs=45.3

Q ss_pred             ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957          208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE  269 (348)
Q Consensus       208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE  269 (348)
                      .-+.||+..+|-++- +.+|+=+.|-|.+|+|||+++.+++.+.+..++.-+.|.-.-+..++
T Consensus       182 ~gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~  244 (444)
T PRK05595        182 TGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQ  244 (444)
T ss_pred             CcccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHH
Confidence            357899999999864 77888888999999999999999998876433333333333333333

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=94.17  E-value=0.051  Score=51.53  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=26.1

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+-+|+.++|.|++|+|||||+.-+.-
T Consensus        37 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   67 (267)
T PRK14235         37 DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNR   67 (267)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3446788999999999999999999976553

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=94.17  E-value=0.044  Score=51.08  Aligned_cols=29  Identities=24%  Similarity=0.367  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus        26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~   54 (252)
T CHL00131         26 LNLSINKGEIHAIMGPNGSGKSTLSKVIA   54 (252)
T ss_pred             ceeEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence            33678999999999999999999997544

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=94.15  E-value=0.048  Score=53.18  Aligned_cols=30  Identities=30%  Similarity=0.484  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~   54 (305)
T PRK13651         25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLN   54 (305)
T ss_pred             eeEEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence            345789999999999999999999997554

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=94.15  E-value=0.049  Score=52.11  Aligned_cols=29  Identities=28%  Similarity=0.612  Sum_probs=25.6

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      |.=+.+-+|.++||+|..|+|||||+.-+
T Consensus        45 disf~i~~Ge~vGiiG~NGaGKSTLlkli   73 (249)
T COG1134          45 DISFEIYKGERVGIIGHNGAGKSTLLKLI   73 (249)
T ss_pred             CceEEEeCCCEEEEECCCCCcHHHHHHHH
Confidence            45678999999999999999999999643

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.15  E-value=0.05  Score=51.23  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=26.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-++.
T Consensus        26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~G   55 (259)
T PRK14260         26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNR   55 (259)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            347889999999999999999999986654

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.14  E-value=0.05  Score=51.93  Aligned_cols=30  Identities=23%  Similarity=0.332  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        38 ~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~   67 (274)
T PRK14265         38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFN   67 (274)
T ss_pred             eeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344678999999999999999999997554

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.13  E-value=0.046  Score=52.38  Aligned_cols=42  Identities=21%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEE
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF  260 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~  260 (348)
                      .=+.+-||.-.+|.||+|+|||||+..|+-...-.++.+-|+
T Consensus        27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~   68 (263)
T COG1127          27 VDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID   68 (263)
T ss_pred             ceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEc
Confidence            346789999999999999999999986654332233345555

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=94.13  E-value=0.05  Score=51.03  Aligned_cols=27  Identities=26%  Similarity=0.412  Sum_probs=24.4

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+..+|+|++|+|||||+.-+.
T Consensus        23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~   49 (255)
T PRK11231         23 LSLPTGKITALIGPNGCGKSTLLKCFA   49 (255)
T ss_pred             eEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            678999999999999999999997554

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=94.13  E-value=0.066  Score=56.53  Aligned_cols=30  Identities=33%  Similarity=0.524  Sum_probs=26.3

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+++-+||++.|.|.+|+|||||+.-+.
T Consensus       339 ~l~~t~~~g~~talvG~SGaGKSTLl~lL~  368 (559)
T COG4988         339 DLNLTIKAGQLTALVGASGAGKSTLLNLLL  368 (559)
T ss_pred             CceeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence            566789999999999999999999986544

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.12  E-value=0.26  Score=54.13  Aligned_cols=113  Identities=18%  Similarity=0.227  Sum_probs=59.6

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccch----hHHHHHHHHHHcCccccCc--------ccC
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR----EGNDLYREMIESGVIKLGD--------KQA  290 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~r----Ev~~~~~e~~~~~v~~~~~--------~~~  290 (348)
                      +.+|+-++++|+.|+||||++..++......++...|........|    |-...|.++..-.+....+        +..
T Consensus       182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~  261 (767)
T PRK14723        182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL  261 (767)
T ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh
Confidence            3468899999999999999999888655333332233333333333    3323333322111100000        012


Q ss_pred             CCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhH
Q 018957          291 DSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR  339 (348)
Q Consensus       291 ~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR  339 (348)
                      .++-+|++-|+-.++......-.... +.+   ...-.+++|++|..++
T Consensus       262 ~~~D~VLIDTAGRs~~d~~l~eel~~-l~~---~~~p~e~~LVLsAt~~  306 (767)
T PRK14723        262 GDKHLVLIDTVGMSQRDRNVSEQIAM-LCG---VGRPVRRLLLLNAASH  306 (767)
T ss_pred             cCCCEEEEeCCCCCccCHHHHHHHHH-Hhc---cCCCCeEEEEECCCCc
Confidence            34567888888766644332222111 111   1134578999988875

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.12  E-value=0.051  Score=51.87  Aligned_cols=27  Identities=33%  Similarity=0.602  Sum_probs=24.6

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.++|+|++|+|||||+.-+.
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~   52 (274)
T PRK13647         26 LSIPEGSKTALLGPNGAGKSTLLLHLN   52 (274)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            689999999999999999999997554

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=94.11  E-value=0.052  Score=48.89  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=24.4

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+-+|+.++|.|++|+|||||+.-+.
T Consensus        28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~   54 (192)
T cd03232          28 GYVKPGTLTALMGESGAGKTTLLDVLA   54 (192)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence            588899999999999999999997654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=94.11  E-value=0.21  Score=51.52  Aligned_cols=34  Identities=21%  Similarity=0.418  Sum_probs=23.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEE
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFA  261 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~  261 (348)
                      .+.|.|++|+|||.|++.+.+...+.+.+. ++|+
T Consensus       143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv  177 (450)
T PRK14087        143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM  177 (450)
T ss_pred             ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence            478999999999999987766443334444 3444

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.09  E-value=0.053  Score=50.69  Aligned_cols=29  Identities=21%  Similarity=0.387  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+..+|+|++|+|||||+.-++
T Consensus        23 ~s~~i~~G~~~~i~G~nGsGKSTLl~~l~   51 (251)
T PRK14249         23 INMDFPERQITAIIGPSGCGKSTLLRALN   51 (251)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34578999999999999999999997554

>PRK08506 replicative DNA helicase; Provisional

Probab=94.08  E-value=0.056  Score=56.02  Aligned_cols=62  Identities=16%  Similarity=0.176  Sum_probs=46.2

Q ss_pred             ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      .-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.++. +.-++|.-.-....++
T Consensus       173 ~Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEMs~~ql  235 (472)
T PRK08506        173 IGLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEMPAEQL  235 (472)
T ss_pred             CcccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcCCHHHH
Confidence            34889999999986 47789999999999999999999999987643 2223344444444443

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=94.08  E-value=0.054  Score=50.89  Aligned_cols=29  Identities=21%  Similarity=0.398  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-++
T Consensus        24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~   52 (257)
T PRK10619         24 VSLQANAGDVISIIGSSGSGKSTFLRCIN   52 (257)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678899999999999999999997554

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.07  E-value=0.053  Score=52.17  Aligned_cols=28  Identities=14%  Similarity=0.258  Sum_probs=24.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        59 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~   86 (285)
T PRK14254         59 SMDIPENQVTAMIGPSGCGKSTFLRCIN   86 (285)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3678999999999999999999997665

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=94.06  E-value=0.056  Score=49.50  Aligned_cols=29  Identities=28%  Similarity=0.312  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+..+|.|++|+|||||+.-+.
T Consensus        24 vs~~i~~G~~~~I~G~nGsGKStLl~~l~   52 (220)
T TIGR02982        24 INLEINPGEIVILTGPSGSGKTTLLTLIG   52 (220)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678899999999999999999997654

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=94.05  E-value=0.056  Score=49.31  Aligned_cols=29  Identities=31%  Similarity=0.655  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus        23 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~   51 (221)
T cd03244          23 ISFSIKPGEKVGIVGRTGSGKSSLLLALF   51 (221)
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHH
Confidence            34788899999999999999999997554

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.05  E-value=0.053  Score=51.73  Aligned_cols=30  Identities=23%  Similarity=0.482  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~   49 (275)
T PRK13639         20 GINFKAEKGEMVALLGPNGAGKSTLFLHFN   49 (275)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344789999999999999999999997554

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.05  E-value=0.62  Score=44.11  Aligned_cols=107  Identities=24%  Similarity=0.241  Sum_probs=60.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCC
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP  304 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep  304 (348)
                      -|+=+.|.|+.|+|||.|+++++-....  .+..|....-|-  .+.++++.|...+. ...+ .......+++...-+|
T Consensus        27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~--~g~~v~yvsTe~--T~refi~qm~sl~y-dv~~-~~l~G~l~~~~~~~~~  100 (235)
T COG2874          27 VGSLILIEGDNGTGKSVLSQRFAYGFLM--NGYRVTYVSTEL--TVREFIKQMESLSY-DVSD-FLLSGRLLFFPVNLEP  100 (235)
T ss_pred             cCeEEEEECCCCccHHHHHHHHHHHHHh--CCceEEEEEech--hHHHHHHHHHhcCC-CchH-HHhcceeEEEEecccc
Confidence            4788999999999999999999876654  366666655554  45667777766542 1111 1223344555432222


Q ss_pred             HHH---HHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          305 PGA---RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       305 ~~~---r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                      .-.   ..+.-+-=  +.|+-+- .-+||+ ++||++-++
T Consensus       101 ~~~~~~~~~~~L~~--l~~~~k~-~~~dVi-IIDSls~~~  136 (235)
T COG2874         101 VNWGRRSARKLLDL--LLEFIKR-WEKDVI-IIDSLSAFA  136 (235)
T ss_pred             cccChHHHHHHHHH--HHhhHHh-hcCCEE-EEecccHHh
Confidence            211   11111111  2233332 345664 679998776

>PF13245 AAA_19: Part of AAA domain

Probab=94.04  E-value=0.075  Score=41.56  Aligned_cols=26  Identities=27%  Similarity=0.426  Sum_probs=20.1

Q ss_pred             Ccee-EeecCCCCcHHHHHHHHHHHHH
Q 018957          226 GGKI-GLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       226 GQr~-gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      |+++ .|-|++|+|||+++.+.+....
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3444 4599999999988888887665

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.04  E-value=0.053  Score=52.23  Aligned_cols=31  Identities=32%  Similarity=0.523  Sum_probs=27.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+-+|.-.+|+||.|+|||||+.-+..
T Consensus        20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             cceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3457899999999999999999999987654

>PRK07004 replicative DNA helicase; Provisional

Probab=94.03  E-value=0.077  Score=54.86  Aligned_cols=60  Identities=22%  Similarity=0.139  Sum_probs=45.5

Q ss_pred             ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccc
Q 018957          208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT  267 (348)
Q Consensus       208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~  267 (348)
                      .-+.||++-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.+..++.-++|.-.-...
T Consensus       194 ~gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~  254 (460)
T PRK07004        194 TGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG  254 (460)
T ss_pred             CCccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence            35789999999986 4889999999999999999999999988764333333343333333

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.03  E-value=0.054  Score=51.92  Aligned_cols=28  Identities=25%  Similarity=0.321  Sum_probs=24.8

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+.+|+.++|+|++|+|||||+.-++
T Consensus        27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~   54 (282)
T PRK13640         27 SFSIPRGSWTALIGHNGSGKSTISKLIN   54 (282)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            3578899999999999999999997654

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=94.03  E-value=0.054  Score=51.40  Aligned_cols=30  Identities=27%  Similarity=0.436  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~   60 (267)
T PRK15112         31 PLSFTLREGQTLAIIGENGSGKSTLAKMLA   60 (267)
T ss_pred             eeeEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence            445788999999999999999999997554

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.03  E-value=0.094  Score=50.91  Aligned_cols=39  Identities=31%  Similarity=0.454  Sum_probs=30.3

Q ss_pred             ceeeee-ceeecccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          213 GIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       213 GIkvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      +-+++| .-++|-+|.-+.++|++|+||||++. ||++..+
T Consensus        13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLk-MINrLie   52 (309)
T COG1125          13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLK-MINRLIE   52 (309)
T ss_pred             CceeeeeeeEEecCCeEEEEECCCCCcHHHHHH-HHhcccC
Confidence            334554 45789999999999999999999996 5665543

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=94.02  E-value=0.062  Score=48.92  Aligned_cols=29  Identities=24%  Similarity=0.472  Sum_probs=26.5

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+ +.++|.|++|+|||||+..+.
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~   44 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIA   44 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHh
Confidence            88899999 999999999999999997554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.01  E-value=0.056  Score=51.06  Aligned_cols=31  Identities=16%  Similarity=0.239  Sum_probs=26.3

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      -|.=+.+-+|+.++|+|++|+|||||+.-+.
T Consensus        33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   63 (265)
T PRK14252         33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFN   63 (265)
T ss_pred             eeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            3455678899999999999999999997554

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=94.01  E-value=0.054  Score=52.46  Aligned_cols=29  Identities=24%  Similarity=0.453  Sum_probs=25.5

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+..+|.|+.|+|||||+..+.
T Consensus        21 is~~i~~Gei~~l~G~NGaGKTTLl~~l~   49 (301)
T TIGR03522        21 VSFEAQKGRIVGFLGPNGAGKSTTMKIIT   49 (301)
T ss_pred             eEEEEeCCeEEEEECCCCCCHHHHHHHHh
Confidence            34778999999999999999999997654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.00  E-value=0.072  Score=56.11  Aligned_cols=30  Identities=23%  Similarity=0.489  Sum_probs=26.9

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ++|.+|.|++|.|++|+||||++..+.+-.
T Consensus       373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~  402 (591)
T KOG0057|consen  373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFF  402 (591)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            789999999999999999999998776643

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.00  E-value=0.055  Score=52.55  Aligned_cols=30  Identities=20%  Similarity=0.287  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-|+
T Consensus        63 ~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~   92 (305)
T PRK14264         63 GVSMDIPEKSVTALIGPSGCGKSTFLRCLN   92 (305)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            345788999999999999999999997665

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.98  E-value=0.056  Score=52.02  Aligned_cols=29  Identities=34%  Similarity=0.537  Sum_probs=25.5

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+..+.
T Consensus        26 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~   54 (287)
T PRK13637         26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLN   54 (287)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            33788999999999999999999997654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=93.97  E-value=0.055  Score=46.74  Aligned_cols=28  Identities=32%  Similarity=0.601  Sum_probs=24.4

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.+-+|+..+|.|++|+|||||+.-+..
T Consensus        21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G   48 (144)
T cd03221          21 LTINPGDRIGLVGRNGAGKSTLLKLIAG   48 (144)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence            5788999999999999999999975543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.96  E-value=0.057  Score=51.69  Aligned_cols=30  Identities=20%  Similarity=0.338  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   54 (279)
T PRK13650         25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLID   54 (279)
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence            455789999999999999999999997554

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=93.95  E-value=0.05  Score=51.36  Aligned_cols=26  Identities=35%  Similarity=0.592  Sum_probs=22.7

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .+.+|+.++|+|++|+|||||+.-+.
T Consensus        21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~   46 (246)
T cd03237          21 SISESEVIGILGPNGIGKTTFIKMLA   46 (246)
T ss_pred             CcCCCCEEEEECCCCCCHHHHHHHHh
Confidence            36689999999999999999997554

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=93.94  E-value=0.06  Score=49.82  Aligned_cols=30  Identities=27%  Similarity=0.413  Sum_probs=25.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+..+|.|++|+|||||+.-+..
T Consensus        19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g   48 (232)
T cd03300          19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAG   48 (232)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            347789999999999999999999976654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=93.92  E-value=0.058  Score=52.12  Aligned_cols=30  Identities=27%  Similarity=0.563  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|++++|+|++|+|||||+.-|.
T Consensus        55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~   84 (282)
T cd03291          55 NINLKIEKGEMLAITGSTGSGKTSLLMLIL   84 (282)
T ss_pred             eeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            455688999999999999999999997554

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=93.92  E-value=0.054  Score=55.56  Aligned_cols=37  Identities=32%  Similarity=0.628  Sum_probs=31.3

Q ss_pred             eeeeece-eecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          214 IKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       214 IkvID~l-~PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ++++|.+ +++.+||.+||.|.+|+|||||-..+.+=.
T Consensus       300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~  337 (534)
T COG4172         300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI  337 (534)
T ss_pred             eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc
Confidence            5677655 799999999999999999999988777643

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=93.92  E-value=0.056  Score=54.49  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=26.1

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..|+
T Consensus        32 ~vsl~i~~Ge~~~LlGpsGsGKSTLLr~Ia   61 (375)
T PRK09452         32 NLDLTINNGEFLTLLGPSGCGKTTVLRLIA   61 (375)
T ss_pred             eeEEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence            355789999999999999999999997554

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.91  E-value=0.087  Score=49.94  Aligned_cols=30  Identities=27%  Similarity=0.520  Sum_probs=25.6

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        26 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~   55 (261)
T PRK14263         26 DSHVPIRKNEITGFIGPSGCGKSTVLRSLN   55 (261)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            345778999999999999999999997553

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.91  E-value=0.059  Score=51.44  Aligned_cols=31  Identities=29%  Similarity=0.546  Sum_probs=26.5

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+-+|+.++|.|++|+|||||+.-+.-
T Consensus        20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   50 (274)
T PRK13644         20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNG   50 (274)
T ss_pred             eeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4447899999999999999999999976653

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=93.91  E-value=0.057  Score=53.80  Aligned_cols=30  Identities=27%  Similarity=0.428  Sum_probs=25.4

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus        23 ~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~   52 (343)
T TIGR02314        23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVN   52 (343)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344689999999999999999999997443

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=93.89  E-value=0.46  Score=48.87  Aligned_cols=29  Identities=34%  Similarity=0.530  Sum_probs=24.9

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.+|++++++|+.|+||||++..++...
T Consensus       187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        187 IIEQGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998887543

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=93.88  E-value=0.072  Score=52.93  Aligned_cols=30  Identities=33%  Similarity=0.443  Sum_probs=26.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+..+|+|++|+|||||+.-|+
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~ia   44 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA   44 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            667889999999999999999999997554

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=93.88  E-value=0.054  Score=50.30  Aligned_cols=29  Identities=24%  Similarity=0.326  Sum_probs=25.0

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      =+.+.+|+.++|.|++|+|||||+.-+.-
T Consensus        21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   49 (248)
T PRK09580         21 NLEVRPGEVHAIMGPNGSGKSTLSATLAG   49 (248)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence            36788999999999999999999975543

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=93.88  E-value=0.057  Score=54.09  Aligned_cols=30  Identities=23%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..|.
T Consensus        21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL~~ia   50 (369)
T PRK11000         21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIA   50 (369)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            344688999999999999999999997554

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.86  E-value=0.06  Score=51.85  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=24.7

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.|.+|+.++|+|++|+|||||+..+.
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~   54 (290)
T PRK13634         28 VSIPSGSYVAIIGHTGSGKSTLLQHLN   54 (290)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            689999999999999999999997665

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=93.85  E-value=0.72  Score=47.50  Aligned_cols=28  Identities=29%  Similarity=0.424  Sum_probs=23.7

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .++.+++|+|+.|+||||++..++....
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~  266 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFH  266 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4568999999999999999998876543

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.85  E-value=0.055  Score=50.40  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=25.5

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      -+++-+||.++|+|..|+|||||+.+++
T Consensus        33 SFtL~~~QTlaiIG~NGSGKSTLakMla   60 (267)
T COG4167          33 SFTLREGQTLAIIGENGSGKSTLAKMLA   60 (267)
T ss_pred             EEEecCCcEEEEEccCCCcHhHHHHHHh
Confidence            4789999999999999999999998764

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=93.84  E-value=0.064  Score=49.77  Aligned_cols=30  Identities=27%  Similarity=0.503  Sum_probs=25.6

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+..+|.|++|+|||||+.-+.
T Consensus        17 ~is~~i~~Ge~~~i~G~nG~GKStLl~~l~   46 (235)
T cd03299          17 NVSLEVERGDYFVILGPTGSGKSVLLETIA   46 (235)
T ss_pred             eeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            334788899999999999999999997554

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=93.80  E-value=0.061  Score=50.51  Aligned_cols=27  Identities=33%  Similarity=0.506  Sum_probs=24.2

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.++|.|++|+|||||+.-+.
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~   48 (256)
T TIGR03873        22 VTAPPGSLTGLLGPNGSGKSTLLRLLA   48 (256)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence            678899999999999999999997554

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK07773 replicative DNA helicase; Validated

Probab=93.79  E-value=0.092  Score=58.51  Aligned_cols=62  Identities=18%  Similarity=0.189  Sum_probs=48.2

Q ss_pred             ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957          208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE  269 (348)
Q Consensus       208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE  269 (348)
                      ..+.||+..+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.+..++.-+.|...-+..++
T Consensus       198 ~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q  260 (886)
T PRK07773        198 RGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ  260 (886)
T ss_pred             CCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence            56899999999987 478999999999999999999999999987654333444444444443

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=93.79  E-value=0.067  Score=50.41  Aligned_cols=29  Identities=31%  Similarity=0.552  Sum_probs=25.2

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      =+.+.+|+.++|+|++|+|||||+.-+.-
T Consensus        41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   69 (257)
T cd03288          41 KAYIKPGQKVGICGRTGSGKSSLSLAFFR   69 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            36788999999999999999999976543

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=93.79  E-value=0.14  Score=43.14  Aligned_cols=22  Identities=41%  Similarity=0.513  Sum_probs=19.1

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.|.|++|+|||+|+..++...
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5799999999999999887654

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK05636 replicative DNA helicase; Provisional

Probab=93.77  E-value=0.11  Score=54.52  Aligned_cols=59  Identities=24%  Similarity=0.276  Sum_probs=44.9

Q ss_pred             ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccc
Q 018957          208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT  267 (348)
Q Consensus       208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~  267 (348)
                      .-+.||+.-+|-++- +.+|+=+.|-|.+|+|||+++.+++.+.+..++. .|.....|=.
T Consensus       246 ~Gi~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~-~v~~fSlEMs  305 (505)
T PRK05636        246 TGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNK-ASVIFSLEMS  305 (505)
T ss_pred             CceecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCC-eEEEEEeeCC
Confidence            458999999999864 7788889999999999999999999887644433 3333344443

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=93.76  E-value=0.066  Score=50.92  Aligned_cols=30  Identities=20%  Similarity=0.351  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        43 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~la   72 (272)
T PRK14236         43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFN   72 (272)
T ss_pred             eEEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            334678899999999999999999997654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.76  E-value=0.11  Score=49.72  Aligned_cols=57  Identities=23%  Similarity=0.412  Sum_probs=37.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEE---eeccchhHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG---VGERTREGNDLYRE  276 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~---IGER~rEv~~~~~e  276 (348)
                      .=+.|-+|+-+.|+|++|+|||||+..+.. ......+-+.+-+   ++-++.|..++..+
T Consensus        23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng-l~d~t~G~i~~~g~~i~~~~~k~lr~~r~~   82 (258)
T COG3638          23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPTSGEILFNGVQITKLKGKELRKLRRD   82 (258)
T ss_pred             EeEEeCCCcEEEEECCCCCcHHHHHHHHhc-ccCCCcceEEecccchhccchHHHHHHHHh
Confidence            336789999999999999999999976533 2111122233333   56667777654433

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=93.74  E-value=0.12  Score=46.06  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=34.7

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHH------hhcCCEEEEEEeeccchhHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVA------KAHGGFSVFAGVGERTREGNDLYREMIE  279 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a------~~~~~~~V~~~IGER~rEv~~~~~e~~~  279 (348)
                      ..|-||+|+|||+++..++....      ....+- -+..+......+..+++.|.+
T Consensus        20 ~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~-~il~~~~sN~avd~~~~~l~~   75 (236)
T PF13086_consen   20 TLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGK-KILVVSPSNAAVDNILERLKK   75 (236)
T ss_dssp             EEEE-STTSSHHHHHHHHHHHH-------HCCCSS--EEEEESSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCChHHHHHHHHHHhccchhhhhhhccc-cceeecCCchhHHHHHHHHHh
Confidence            57899999999999999888761      122222 333456777888888888877

>PRK10867 signal recognition particle protein; Provisional

Probab=93.73  E-value=0.71  Score=47.65  Aligned_cols=39  Identities=21%  Similarity=0.182  Sum_probs=27.0

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG  264 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG  264 (348)
                      -..+.+.|.+|+||||++..++...++.++.-+.++.+.
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D  138 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD  138 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            356789999999999999999876644313333444444

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.69  E-value=0.069  Score=51.18  Aligned_cols=29  Identities=24%  Similarity=0.303  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-++
T Consensus        26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~   54 (279)
T PRK13635         26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLN   54 (279)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            33788999999999999999999997554

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=93.68  E-value=0.92  Score=37.90  Aligned_cols=21  Identities=38%  Similarity=0.499  Sum_probs=17.9

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.+.|++|+||||++..+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999887643

...

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.65  E-value=0.07  Score=50.37  Aligned_cols=31  Identities=16%  Similarity=0.269  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..+..
T Consensus        25 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G   55 (261)
T PRK14258         25 GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNR   55 (261)
T ss_pred             ceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3447789999999999999999999976553

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=93.65  E-value=0.15  Score=52.22  Aligned_cols=37  Identities=24%  Similarity=0.446  Sum_probs=26.3

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEe
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGV  263 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~I  263 (348)
                      .-+.|.|++|+|||+|+..+.+...+.+.+. ++|+-.
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~  186 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS  186 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence            4478999999999999988877654443344 455533

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=93.65  E-value=0.068  Score=52.95  Aligned_cols=30  Identities=27%  Similarity=0.464  Sum_probs=25.6

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~   52 (343)
T PRK11153         23 NVSLHIPAGEIFGVIGASGAGKSTLIRCIN   52 (343)
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            334688999999999999999999997554

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.64  E-value=0.069  Score=50.51  Aligned_cols=29  Identities=28%  Similarity=0.461  Sum_probs=25.3

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      |.=+.+.+|.-+.|.|++|+|||||+..+
T Consensus        23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLnii   51 (226)
T COG1136          23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLL   51 (226)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            45578999999999999999999999643

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=93.61  E-value=0.07  Score=52.96  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=27.2

Q ss_pred             ee-eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          216 VV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       216 vI-D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      ++ |.=+.+.+|+.++|.|+.|+|||||+..|.-
T Consensus        56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G   89 (340)
T PRK13536         56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILG   89 (340)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence            44 3346899999999999999999999976643

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=93.61  E-value=0.071  Score=51.32  Aligned_cols=28  Identities=29%  Similarity=0.647  Sum_probs=25.4

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.|.+|++++|+|++|+|||||+..+..
T Consensus        25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~g   52 (275)
T cd03289          25 FSISPGQRVGLLGRTGSGKSTLLSAFLR   52 (275)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            6899999999999999999999986654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=93.60  E-value=0.069  Score=53.34  Aligned_cols=29  Identities=24%  Similarity=0.403  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+..|.-+.|+||+|||||||+..|+
T Consensus        22 i~l~i~~Gef~vllGPSGcGKSTlLr~IA   50 (338)
T COG3839          22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIA   50 (338)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            44689999999999999999999997543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=93.60  E-value=0.069  Score=52.02  Aligned_cols=30  Identities=40%  Similarity=0.557  Sum_probs=25.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+..+|.|+.|+|||||+..+..
T Consensus        26 vsl~i~~Gei~gllGpNGaGKSTLl~~l~G   55 (306)
T PRK13537         26 LSFHVQRGECFGLLGPNGAGKTTTLRMLLG   55 (306)
T ss_pred             ceEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence            347889999999999999999999976653

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=93.57  E-value=0.25  Score=50.30  Aligned_cols=21  Identities=29%  Similarity=0.667  Sum_probs=17.6

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +||+||+|||||.++..+++.
T Consensus       151 llL~GPPGcGKTllAraiA~e  171 (413)
T PLN00020        151 LGIWGGKGQGKSFQCELVFKK  171 (413)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999998766543

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=93.56  E-value=0.06  Score=56.56  Aligned_cols=30  Identities=27%  Similarity=0.521  Sum_probs=26.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+++.+|+|+.|.|.+|+|||||++-+..
T Consensus       357 ~~l~l~~GEkvAIlG~SGsGKSTllqLl~~  386 (573)
T COG4987         357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAG  386 (573)
T ss_pred             cceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence            347899999999999999999999986664

>PRK08727 hypothetical protein; Validated

Probab=93.56  E-value=0.13  Score=48.00  Aligned_cols=51  Identities=24%  Similarity=0.247  Sum_probs=33.9

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI  278 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~  278 (348)
                      +-+.|.|++|+|||.|+..+.+...+ ++-.++|.-..+..+...+.++.+.
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~l~   92 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQ-AGRSSAYLPLQAAAGRLRDALEALE   92 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEeHHHhhhhHHHHHHHHh
Confidence            34899999999999999987765433 3334567766655544444444443

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=93.55  E-value=0.14  Score=46.01  Aligned_cols=41  Identities=27%  Similarity=0.517  Sum_probs=27.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      +.+|+|++|+|||.|++...-+.  ..+.+.--.++.-+-|.|
T Consensus        10 kllIigDsgVGKssLl~rF~ddt--Fs~sYitTiGvDfkirTv   50 (198)
T KOG0079|consen   10 KLLIIGDSGVGKSSLLLRFADDT--FSGSYITTIGVDFKIRTV   50 (198)
T ss_pred             HHHeecCCcccHHHHHHHHhhcc--cccceEEEeeeeEEEEEe
Confidence            56899999999999998665431  223455556666555554

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=93.55  E-value=0.067  Score=50.18  Aligned_cols=30  Identities=30%  Similarity=0.482  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus        14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~   43 (248)
T PRK03695         14 PLSAEVRAGEILHLVGPNGAGKSTLLARMA   43 (248)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence            444688999999999999999999997554

>PRK00300 gmk guanylate kinase; Provisional

Probab=93.55  E-value=0.069  Score=48.05  Aligned_cols=26  Identities=38%  Similarity=0.590  Sum_probs=23.0

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+|+-++|.|++|+|||||+..++..
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            47999999999999999999887654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.54  E-value=0.074  Score=50.29  Aligned_cols=30  Identities=27%  Similarity=0.474  Sum_probs=25.6

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        28 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia   57 (257)
T PRK14246         28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLN   57 (257)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344678999999999999999999997554

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=93.53  E-value=0.067  Score=48.46  Aligned_cols=53  Identities=28%  Similarity=0.439  Sum_probs=32.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcC--CEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHG--GFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~--~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      |+.|+|++|+||||++..+....---|=  +...-..+-++ .|.....+.+.+.|
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-t~lg~~~k~~i~~g   56 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-TELGEEIKKYIDKG   56 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-ChHHHHHHHHHHcC
Confidence            7899999999999999988765211111  12233444444 44444445555554

>TIGR00959 ffh signal recognition particle protein

Probab=93.49  E-value=0.84  Score=47.04  Aligned_cols=44  Identities=20%  Similarity=0.163  Sum_probs=29.6

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      .-+.+.|.+|+||||++..++.......+.-+.++.+.-+....
T Consensus       100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a  143 (428)
T TIGR00959       100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA  143 (428)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence            35788999999999999999876432223345556666443333

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK08084 DNA replication initiation factor; Provisional

Probab=93.47  E-value=0.17  Score=47.38  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=21.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+..+.|+|++|+|||+|+..+.+..
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~   69 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAEL   69 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34578999999999999998776644

>TIGR03263 guanyl_kin guanylate kinase

Probab=93.47  E-value=0.064  Score=47.19  Aligned_cols=23  Identities=39%  Similarity=0.603  Sum_probs=20.8

Q ss_pred             CceeEeecCCCCcHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.+.|.|++|+|||||+..++.
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~   23 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLE   23 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHc
Confidence            67899999999999999988765

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK08233 hypothetical protein; Provisional

Probab=93.46  E-value=0.076  Score=46.41  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=21.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.-++|.|++|+|||||+..++..
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhh
Confidence            4567899999999999999888754

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=93.45  E-value=0.2  Score=46.62  Aligned_cols=35  Identities=34%  Similarity=0.579  Sum_probs=26.7

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEE
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFA  261 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~  261 (348)
                      .-+-|+|++|+|||.|++.+.+...+.+++. ++|.
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~   70 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL   70 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence            4578999999999999998887665555554 4554

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>TIGR00235 udk uridine kinase

Probab=93.45  E-value=0.069  Score=48.68  Aligned_cols=24  Identities=38%  Similarity=0.648  Sum_probs=21.5

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +|..++|.|++|+|||||+..+..
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999987764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.44  E-value=0.078  Score=52.35  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=26.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|++++|.|++|+|||||+.-+..
T Consensus       101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g  130 (329)
T PRK14257        101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ  130 (329)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            346788999999999999999999986654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=93.44  E-value=0.078  Score=50.70  Aligned_cols=30  Identities=17%  Similarity=0.334  Sum_probs=25.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-+.-
T Consensus        29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   58 (280)
T PRK13633         29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNA   58 (280)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            346788999999999999999999976653

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.44  E-value=0.079  Score=52.08  Aligned_cols=27  Identities=19%  Similarity=0.416  Sum_probs=24.5

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.++|.|++|+|||||+.-+.
T Consensus        47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~   73 (320)
T PRK13631         47 YTFEKNKIYFIIGNSGSGKSTLVTHFN   73 (320)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            788999999999999999999997554

>PRK06893 DNA replication initiation factor; Validated

Probab=93.43  E-value=0.12  Score=48.27  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .+.|+|++|+|||+|+..+++...+
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~   65 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLL   65 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3689999999999999888765443

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=93.42  E-value=0.96  Score=46.44  Aligned_cols=29  Identities=38%  Similarity=0.651  Sum_probs=25.0

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      +.+|..+.+.|+.|+||||++..++...+
T Consensus       218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~  246 (424)
T PRK05703        218 LKQGGVVALVGPTGVGKTTTLAKLAARYA  246 (424)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999998887654

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=93.41  E-value=0.079  Score=53.11  Aligned_cols=30  Identities=33%  Similarity=0.555  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus        23 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia   52 (362)
T TIGR03258        23 DLSLEIEAGELLALIGKSGCGKTTLLRAIA   52 (362)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            344678899999999999999999997654

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.40  E-value=0.083  Score=50.45  Aligned_cols=31  Identities=23%  Similarity=0.390  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|.|++|+|||||+.-+..
T Consensus        22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G   52 (277)
T PRK13652         22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFNG   52 (277)
T ss_pred             EeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3347889999999999999999999975543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=93.39  E-value=0.07  Score=57.18  Aligned_cols=30  Identities=37%  Similarity=0.581  Sum_probs=26.1

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|++++|+|+.|+|||||+.-|+
T Consensus        19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~   48 (638)
T PRK10636         19 NATATINPGQKVGLVGKNGCGKSTLLALLK   48 (638)
T ss_pred             CcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            444789999999999999999999997554

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=93.38  E-value=0.08  Score=53.38  Aligned_cols=29  Identities=28%  Similarity=0.489  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+..|+
T Consensus        38 vsl~i~~Ge~~~llGpsGsGKSTLLr~Ia   66 (377)
T PRK11607         38 VSLTIYKGEIFALLGASGCGKSTLLRMLA   66 (377)
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            44788999999999999999999997554

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.37  E-value=0.083  Score=50.43  Aligned_cols=27  Identities=19%  Similarity=0.302  Sum_probs=24.4

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+-+|+.++|.|++|+|||||+.-+.
T Consensus        28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~   54 (277)
T PRK13642         28 FSITKGEWVSIIGQNGSGKSTTARLID   54 (277)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            688899999999999999999997554

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=93.32  E-value=0.078  Score=55.05  Aligned_cols=31  Identities=29%  Similarity=0.579  Sum_probs=26.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|++++|+|++|+|||||+..+.-
T Consensus        18 ~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~G   48 (520)
T TIGR03269        18 NISFTIEEGEVLGILGRSGAGKSVLMHVLRG   48 (520)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            3456899999999999999999999976654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=93.32  E-value=0.31  Score=43.56  Aligned_cols=89  Identities=26%  Similarity=0.267  Sum_probs=56.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCC
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP  304 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep  304 (348)
                      ||--+-|.|-+|+|||||+..+.....  +.++.+|.+=|..-|..      | ..+   +                .-.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LDgD~lR~~------l-~~d---l----------------~fs   52 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLDGDNLRHG------L-NAD---L----------------GFS   52 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEEHHHHCTT------T-TTT---------------------SS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEecCcchhhc------c-CCC---C----------------CCC
Confidence            566788999999999999998876542  23678888877532221      1 000   0                113


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957          305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       305 ~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~  342 (348)
                      ...|..-..-.-.+|.-|.+ +|..|++=.-+.++=.+
T Consensus        53 ~~dR~e~~rr~~~~A~ll~~-~G~ivIva~isp~~~~R   89 (156)
T PF01583_consen   53 KEDREENIRRIAEVAKLLAD-QGIIVIVAFISPYREDR   89 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTSEEEEE----SHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCeEEEeeccCchHHH
Confidence            45677777777888899998 79988887777765433

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK08840 replicative DNA helicase; Provisional

Probab=93.28  E-value=0.12  Score=53.68  Aligned_cols=57  Identities=23%  Similarity=0.145  Sum_probs=45.1

Q ss_pred             ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957          208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE  265 (348)
Q Consensus       208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE  265 (348)
                      .-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.+..+ +..|...--|
T Consensus       198 ~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~-~~~v~~fSlE  255 (464)
T PRK08840        198 TGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ-DKPVLIFSLE  255 (464)
T ss_pred             CCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC-CCeEEEEecc
Confidence            45899999999986 788999999999999999999999999887433 3344333444

>PLN03073 ABC transporter F family; Provisional

Probab=93.27  E-value=0.07  Score=58.15  Aligned_cols=30  Identities=30%  Similarity=0.457  Sum_probs=26.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.|..|.|+||+|+.|+|||||+..|.
T Consensus       195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~  224 (718)
T PLN03073        195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMA  224 (718)
T ss_pred             CCEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence            556899999999999999999999998664

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=93.24  E-value=0.08  Score=55.49  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+-+||+++|.|++|+|||||+.-+..
T Consensus       361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~g  391 (582)
T PRK11176        361 NINFKIPAGKTVALVGRSGSGKSTIANLLTR  391 (582)
T ss_pred             CceEEeCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3446788999999999999999999975543

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=93.24  E-value=0.27  Score=48.61  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=21.4

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++++.|+|++|+|||||+..+.+.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~  185 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAV  185 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999999887753

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.22  E-value=0.091  Score=50.40  Aligned_cols=30  Identities=27%  Similarity=0.529  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~   53 (283)
T PRK13636         24 GININIKKGEVTAILGGNGAGKSTLFQNLN   53 (283)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            444788999999999999999999997554

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=93.22  E-value=0.089  Score=46.39  Aligned_cols=24  Identities=29%  Similarity=0.356  Sum_probs=20.8

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.+.|.|++|+|||||+..++..
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999999877654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK06217 hypothetical protein; Validated

Probab=93.15  E-value=0.087  Score=47.08  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.6

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +||.|+|.+|+|||||+..+...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988754

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=93.13  E-value=0.079  Score=56.65  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|++++|+|+.|+|||||+.-+.
T Consensus        21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriia   50 (635)
T PRK11147         21 NAELHIEDNERVCLVGRNGAGKSTLMKILN   50 (635)
T ss_pred             CcEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence            345788999999999999999999997544

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=93.10  E-value=0.16  Score=53.05  Aligned_cols=34  Identities=38%  Similarity=0.611  Sum_probs=27.5

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcC
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG  255 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~  255 (348)
                      .+.+|+-++++|+.|+||||++..++......++
T Consensus       252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G  285 (484)
T PRK06995        252 LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG  285 (484)
T ss_pred             cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence            3568999999999999999999999876543333

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=93.10  E-value=0.084  Score=55.45  Aligned_cols=30  Identities=37%  Similarity=0.565  Sum_probs=25.9

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|++++|.|++|+|||||+.-+..
T Consensus       369 i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g  398 (588)
T PRK11174        369 LNFTLPAGQRIALVGPSGAGKTSLLNALLG  398 (588)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            337899999999999999999999976554

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=93.09  E-value=0.086  Score=56.83  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=26.3

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+-+|++++|.|++|+|||||+.-+..
T Consensus       492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~g  522 (708)
T TIGR01193       492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVG  522 (708)
T ss_pred             ceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3447899999999999999999999975543

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PF12846 AAA_10: AAA-like domain

Probab=93.07  E-value=0.21  Score=46.60  Aligned_cols=44  Identities=23%  Similarity=0.408  Sum_probs=30.3

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYR  275 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~  275 (348)
                      -++|+|.+|+|||++++.++.+.......+.||    ....|...+.+
T Consensus         3 h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~----D~~g~~~~~~~   46 (304)
T PF12846_consen    3 HTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF----DPKGDYSPLAR   46 (304)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE----cCCchHHHHHH
Confidence            368999999999999998887765543233344    55566655433

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=93.06  E-value=0.09  Score=54.77  Aligned_cols=29  Identities=28%  Similarity=0.558  Sum_probs=25.5

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|++++|+|++|+|||||+.-+.
T Consensus        20 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~   48 (530)
T PRK15064         20 ISVKFGGGNRYGLIGANGCGKSTFMKILG   48 (530)
T ss_pred             CEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            34689999999999999999999997554

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=93.05  E-value=0.086  Score=54.52  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus        22 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~   51 (501)
T PRK10762         22 GAALNVYPGRVMALVGENGAGKSTMMKVLT   51 (501)
T ss_pred             eeeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence            345689999999999999999999997554

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=93.05  E-value=0.092  Score=52.75  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=26.4

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+..+|+|++|+|||||+..+..
T Consensus        11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~G   41 (363)
T TIGR01186        11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNR   41 (363)
T ss_pred             eeEEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence            4447899999999999999999999975543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.03  E-value=0.092  Score=48.44  Aligned_cols=26  Identities=31%  Similarity=0.586  Sum_probs=23.0

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      +-+.+|+.++|+|++|+|||||++-+
T Consensus        31 L~v~~Ge~vaiVG~SGSGKSTLl~vl   56 (228)
T COG4181          31 LVVKRGETVAIVGPSGSGKSTLLAVL   56 (228)
T ss_pred             EEecCCceEEEEcCCCCcHHhHHHHH
Confidence            45789999999999999999998744

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.01  E-value=0.1  Score=49.51  Aligned_cols=29  Identities=31%  Similarity=0.539  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      |.-+.+.+|++++|+|++|+|||||+..+
T Consensus        22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l   50 (235)
T COG1122          22 DVSLEIEKGERVLLIGPNGSGKSTLLKLL   50 (235)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence            66678999999999999999999998744

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=92.96  E-value=0.093  Score=54.65  Aligned_cols=30  Identities=33%  Similarity=0.626  Sum_probs=26.3

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.-+.+.+|++++|+|++|+|||||+.-+.
T Consensus       337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~  366 (530)
T PRK15064        337 NLNLLLEAGERLAIIGENGVGKTTLLRTLV  366 (530)
T ss_pred             CcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            355889999999999999999999997554

>PRK14530 adenylate kinase; Provisional

Probab=92.95  E-value=0.1  Score=47.82  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=21.5

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .|-++.|+|++|+||||++..++..
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999887654

>PRK14531 adenylate kinase; Provisional

Probab=92.93  E-value=0.099  Score=46.77  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|+.|+|++|+||||++..++..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999877654

>PRK06904 replicative DNA helicase; Validated

Probab=92.93  E-value=0.13  Score=53.44  Aligned_cols=60  Identities=25%  Similarity=0.164  Sum_probs=46.1

Q ss_pred             ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccch
Q 018957          208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR  268 (348)
Q Consensus       208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~r  268 (348)
                      .-+.||++-+|-++ -+.+|+=+.|=|.+|+|||+++.+++.|.+..+ +..|....-|=..
T Consensus       202 ~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~-g~~Vl~fSlEMs~  262 (472)
T PRK06904        202 TGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS-EKPVLVFSLEMPA  262 (472)
T ss_pred             CCccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCH
Confidence            45789999999984 688899999999999999999999999887543 3344444555433

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=92.92  E-value=0.096  Score=55.05  Aligned_cols=29  Identities=31%  Similarity=0.581  Sum_probs=25.5

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|++++|.|++|+|||||+.-+.
T Consensus        26 vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~   54 (556)
T PRK11819         26 ISLSFFPGAKIGVLGLNGAGKSTLLRIMA   54 (556)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            34789999999999999999999997554

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=92.91  E-value=0.19  Score=48.60  Aligned_cols=31  Identities=35%  Similarity=0.587  Sum_probs=26.2

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhh
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKA  253 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~  253 (348)
                      +.+|+.++|.|+.|+||||++..++...+..
T Consensus       191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~  221 (282)
T TIGR03499       191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLE  221 (282)
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            3578899999999999999999998766543

>PTZ00301 uridine kinase; Provisional

Probab=92.89  E-value=0.15  Score=47.32  Aligned_cols=22  Identities=32%  Similarity=0.708  Sum_probs=19.2

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +||-|++|+|||||+..+....
T Consensus         6 IgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          6 IGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEECCCcCCHHHHHHHHHHHH
Confidence            7899999999999998877554

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=92.88  E-value=0.089  Score=56.67  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=25.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+-+|++++|.|++|+|||||+.-+..
T Consensus       498 isl~i~~Ge~vaIvG~sGsGKSTLlklL~g  527 (710)
T TIGR03796       498 FSLTLQPGQRVALVGGSGSGKSTIAKLVAG  527 (710)
T ss_pred             eeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            446789999999999999999999975553

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=92.88  E-value=0.096  Score=53.89  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=26.6

Q ss_pred             eeec-eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          216 VVDL-LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       216 vID~-l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      ++|- =+.+.+|+.++|+|++|+|||||+..+.
T Consensus        18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~   50 (490)
T PRK10938         18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALA   50 (490)
T ss_pred             ecccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            4433 4789999999999999999999997554

>TIGR00750 lao LAO/AO transport system ATPase

Probab=92.87  E-value=0.18  Score=49.02  Aligned_cols=31  Identities=23%  Similarity=0.374  Sum_probs=26.6

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      ...+++..++|.|++|+|||||+..++....
T Consensus        29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~   59 (300)
T TIGR00750        29 PYTGNAHRVGITGTPGAGKSTLLEALGMELR   59 (300)
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999998887543

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=92.83  E-value=0.11  Score=47.14  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=23.1

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .++..++|.|++|+|||||+..+....
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            477889999999999999998776543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=92.83  E-value=0.097  Score=56.13  Aligned_cols=30  Identities=37%  Similarity=0.592  Sum_probs=26.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|++++|+|+.|+|||||+..++-
T Consensus       331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G  360 (638)
T PRK10636        331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAG  360 (638)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            446899999999999999999999976653

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=92.81  E-value=0.1  Score=53.09  Aligned_cols=29  Identities=31%  Similarity=0.505  Sum_probs=25.5

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      =+.+.+|+.++|+|++|+|||||+..+..
T Consensus        23 s~~i~~Geiv~liGpNGaGKSTLLk~LaG   51 (402)
T PRK09536         23 DLSVREGSLVGLVGPNGAGKTTLLRAING   51 (402)
T ss_pred             EEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence            36789999999999999999999986653

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=92.81  E-value=0.87  Score=45.41  Aligned_cols=29  Identities=31%  Similarity=0.413  Sum_probs=24.1

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      -++.-+++|.|++|+|||||+..++....
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~   81 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLI   81 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34567899999999999999998876653

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=92.80  E-value=0.099  Score=54.43  Aligned_cols=31  Identities=26%  Similarity=0.546  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.-
T Consensus        27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G   57 (529)
T PRK15134         27 DVSLQIEAGETLALVGESGSGKSVTALSILR   57 (529)
T ss_pred             ceEEEEeCCCEEEEECCCCCcHHHHHHHHhc
Confidence            3457788999999999999999999976543

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=92.78  E-value=0.15  Score=47.40  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=18.7

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +||.|++|+|||||+..+....
T Consensus         2 igI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            6899999999999998776543

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK06321 replicative DNA helicase; Provisional

Probab=92.78  E-value=0.15  Score=52.98  Aligned_cols=60  Identities=13%  Similarity=0.073  Sum_probs=45.0

Q ss_pred             ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccc
Q 018957          208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT  267 (348)
Q Consensus       208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~  267 (348)
                      .-+.||+.-+|-++- +.+|+=+.|=|.+|+|||+++.+++.|.+..++.-+.|.-.-...
T Consensus       207 ~Gi~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~  267 (472)
T PRK06321        207 SGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV  267 (472)
T ss_pred             CccccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence            357899999999874 888999999999999999999999998864333223333333333

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=92.77  E-value=0.1  Score=55.11  Aligned_cols=31  Identities=35%  Similarity=0.581  Sum_probs=26.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+|++|+|+.|+|||||+.-++-
T Consensus       340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g  370 (530)
T COG0488         340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG  370 (530)
T ss_pred             CceEEecCCCEEEEECCCCCCHHHHHHHHhh
Confidence            4557788999999999999999999986643

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=92.77  E-value=0.15  Score=46.35  Aligned_cols=34  Identities=29%  Similarity=0.236  Sum_probs=28.3

Q ss_pred             eeeeceeecccCce-eEeecCCCCcHHHHHHHHHH
Q 018957          215 KVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       215 kvID~l~PigkGQr-~gIfg~~GvGKT~L~~~ii~  248 (348)
                      ..++.=+.+..|.| ++|.|+.|+|||||+..+..
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~   50 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGL   50 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHH
Confidence            45666677888865 99999999999999987763

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=92.77  E-value=0.099  Score=53.92  Aligned_cols=29  Identities=31%  Similarity=0.468  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~   48 (500)
T TIGR02633        20 IDLEVRPGECVGLCGENGAGKSTLMKILS   48 (500)
T ss_pred             eEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence            34689999999999999999999997554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>CHL00195 ycf46 Ycf46; Provisional

Probab=92.76  E-value=0.56  Score=49.10  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=18.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -+++.|++|||||.++..++..
T Consensus       261 GILL~GPpGTGKTllAkaiA~e  282 (489)
T CHL00195        261 GLLLVGIQGTGKSLTAKAIAND  282 (489)
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3899999999999999766543

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=92.75  E-value=0.94  Score=40.22  Aligned_cols=27  Identities=33%  Similarity=0.421  Sum_probs=23.1

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+|-.+.|.|.+|+||||++..+....
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l   42 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKL   42 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            567888999999999999998887654

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.71  E-value=0.42  Score=53.50  Aligned_cols=59  Identities=22%  Similarity=0.330  Sum_probs=40.7

Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHHHHHH--hhcCCEEEEEEeeccchhHHHHHHH
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGFSVFAGVGERTREGNDLYRE  276 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a--~~~~~~~V~~~IGER~rEv~~~~~e  276 (348)
                      +.+.|....- |-++|+|-.|+|||||+.++-+...  +.+-|+.+.+.+++ .-.+.+++.+
T Consensus       170 l~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk-~f~~~~iq~~  230 (889)
T KOG4658|consen  170 LWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK-EFTTRKIQQT  230 (889)
T ss_pred             HHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcc-cccHHhHHHH
Confidence            3344444444 9999999999999999998776542  34457888888887 3334444444

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=92.70  E-value=0.1  Score=54.89  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+-+||+++|.|++|+|||||+.-+..
T Consensus       359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g  389 (592)
T PRK10790        359 NINLSVPSRGFVALVGHTGSGKSTLASLLMG  389 (592)
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4457899999999999999999999875543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=92.69  E-value=0.11  Score=55.60  Aligned_cols=31  Identities=32%  Similarity=0.607  Sum_probs=26.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..+.-
T Consensus        34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~G   64 (623)
T PRK10261         34 NLSFSLQRGETLAIVGESGSGKSVTALALMR   64 (623)
T ss_pred             eeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence            4557899999999999999999999986653

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=92.68  E-value=0.094  Score=44.05  Aligned_cols=22  Identities=45%  Similarity=0.813  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|+|||+|+..++.+
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999888764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=92.66  E-value=0.11  Score=46.59  Aligned_cols=24  Identities=38%  Similarity=0.504  Sum_probs=20.9

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .|+.+.|.|++|+|||||+..+..
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~   24 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQ   24 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            378899999999999999987754

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=92.65  E-value=0.11  Score=54.71  Aligned_cols=30  Identities=23%  Similarity=0.435  Sum_probs=25.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+-+|++++|.|++|+|||||+.-+..
T Consensus       334 i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g  363 (569)
T PRK10789        334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQR  363 (569)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            346789999999999999999999976554

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=92.63  E-value=0.11  Score=55.80  Aligned_cols=31  Identities=26%  Similarity=0.481  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+-+|++++|.|++|+|||||+.-+..
T Consensus       471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g  501 (686)
T TIGR03797       471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG  501 (686)
T ss_pred             eeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3447899999999999999999999975543

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=92.62  E-value=0.11  Score=42.43  Aligned_cols=21  Identities=33%  Similarity=0.646  Sum_probs=19.3

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |++|+|.+|+|||||+..+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999988875

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=92.57  E-value=0.11  Score=53.84  Aligned_cols=29  Identities=31%  Similarity=0.425  Sum_probs=25.7

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+..++
T Consensus       282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~  310 (510)
T PRK09700        282 ISFSVCRGEILGFAGLVGSGRTELMNCLF  310 (510)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            44689999999999999999999997665

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=92.57  E-value=0.11  Score=55.99  Aligned_cols=30  Identities=27%  Similarity=0.536  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+-+|++++|.|++|+|||||+.-+.
T Consensus       483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~  512 (694)
T TIGR03375       483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLL  512 (694)
T ss_pred             eeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            444778899999999999999999997554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=92.55  E-value=0.2  Score=45.55  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=23.0

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ...+.-+.|.|++|||||+|+..+.+..
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~   62 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAA   62 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3456778999999999999998877653

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=92.54  E-value=0.13  Score=46.75  Aligned_cols=29  Identities=17%  Similarity=0.109  Sum_probs=24.5

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.+|.++.|.|+.|+||||++..+..++
T Consensus        25 ~l~~~~~~~l~G~Ng~GKStll~~i~~~~   53 (202)
T cd03243          25 NLGSGRLLLITGPNMGGKSTYLRSIGLAV   53 (202)
T ss_pred             EEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence            45578999999999999999998887443

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=92.49  E-value=0.11  Score=55.49  Aligned_cols=29  Identities=45%  Similarity=0.685  Sum_probs=25.5

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|++++|.|+.|+|||||+..++
T Consensus       338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~  366 (635)
T PRK11147        338 FSAQVQRGDKIALIGPNGCGKTTLLKLML  366 (635)
T ss_pred             cEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            34689999999999999999999997655

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=92.48  E-value=0.21  Score=43.34  Aligned_cols=52  Identities=27%  Similarity=0.425  Sum_probs=33.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec----cchhHHHHHHHHHHcC
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE----RTREGNDLYREMIESG  281 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE----R~rEv~~~~~e~~~~~  281 (348)
                      ++.|+|+.++|||||+..+++...+..-.+.++.=.+.    -..+..|-++ | +.|
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r-~-~aG   57 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWR-F-KAG   57 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHH-H-HCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCccccc-c-ccc
Confidence            57899999999999999999876543223445554444    2245555444 4 666

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=92.47  E-value=0.11  Score=56.64  Aligned_cols=30  Identities=30%  Similarity=0.526  Sum_probs=25.7

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.|-.||+++|+|.+|+|||||+.-+..
T Consensus       492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~g  521 (709)
T COG2274         492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLG  521 (709)
T ss_pred             eeEEeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence            336789999999999999999999986543

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=92.46  E-value=0.11  Score=53.68  Aligned_cols=29  Identities=28%  Similarity=0.426  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+..+.
T Consensus        24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~   52 (506)
T PRK13549         24 VSLKVRAGEIVSLCGENGAGKSTLMKVLS   52 (506)
T ss_pred             eeEEEeCCeEEEEECCCCCCHHHHHHHHh
Confidence            34678999999999999999999997554

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=92.42  E-value=0.12  Score=52.54  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..+..
T Consensus        46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I~G   76 (400)
T PRK10070         46 DASLAIEEGEIFVIMGLSGSGKSTMVRLLNR   76 (400)
T ss_pred             eEEEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence            3445788999999999999999999975543

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=92.40  E-value=0.11  Score=53.48  Aligned_cols=33  Identities=36%  Similarity=0.565  Sum_probs=27.6

Q ss_pred             eeee-ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          215 KVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       215 kvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      ++++ .=+.+.+|+.++|+|++|+|||||+..++
T Consensus       274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~  307 (500)
T TIGR02633       274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALF  307 (500)
T ss_pred             cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHh
Confidence            3453 44689999999999999999999998665

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PHA00729 NTP-binding motif containing protein

Probab=92.36  E-value=0.061  Score=50.84  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.5

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..+.|+|.+|||||+|+..+++.
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988764

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=92.35  E-value=0.13  Score=53.83  Aligned_cols=29  Identities=28%  Similarity=0.477  Sum_probs=25.6

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      =+.+-+|++++|.|++|+|||||+.-+..
T Consensus       360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~g  388 (576)
T TIGR02204       360 NLTVRPGETVALVGPSGAGKSTLFQLLLR  388 (576)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence            37899999999999999999999975553

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=92.35  E-value=0.15  Score=45.79  Aligned_cols=24  Identities=38%  Similarity=0.600  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      ++.|-|++|+|||||+..++....
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~   24 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELK   24 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhh
Confidence            578999999999999999987653

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=92.33  E-value=0.13  Score=53.88  Aligned_cols=30  Identities=37%  Similarity=0.531  Sum_probs=25.3

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+-+|++++|.|++|+|||||+.-+.
T Consensus       341 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~  370 (547)
T PRK10522        341 PINLTIKRGELLFLIGGNGSGKSTLAMLLT  370 (547)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344678899999999999999999996554

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=92.31  E-value=0.13  Score=53.88  Aligned_cols=30  Identities=30%  Similarity=0.537  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+-+|++++|.|++|+|||||+.-+.+
T Consensus       348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r  377 (567)
T COG1132         348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLR  377 (567)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            345599999999999999999999875544

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=92.30  E-value=0.18  Score=48.45  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHh
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .+|+|++|+|||||+.+++++.+.
T Consensus       140 tLiigpP~~GKTTlLRdiaR~~s~  163 (308)
T COG3854         140 TLIIGPPQVGKTTLLRDIARLLSD  163 (308)
T ss_pred             eEEecCCCCChHHHHHHHHHHhhc
Confidence            589999999999999999998764

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=92.29  E-value=0.22  Score=44.78  Aligned_cols=22  Identities=36%  Similarity=0.662  Sum_probs=19.6

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ++|-|++|+|||||+..++...
T Consensus         2 i~i~G~sgsGKttla~~l~~~l   23 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQL   23 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999888665

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=92.26  E-value=0.12  Score=45.67  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=19.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+||||++..++..
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999877653

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=92.26  E-value=0.12  Score=53.42  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~   52 (510)
T PRK09700         23 SVNLTVYPGEIHALLGENGAGKSTLMKVLS   52 (510)
T ss_pred             eeeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence            445788999999999999999999997554

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=92.26  E-value=0.14  Score=53.25  Aligned_cols=32  Identities=31%  Similarity=0.489  Sum_probs=26.9

Q ss_pred             eee-ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          216 VVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       216 vID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      ++| .=+.+.+|+.++|+|++|+|||||+..+.
T Consensus       299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~  331 (520)
T TIGR03269       299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIA  331 (520)
T ss_pred             EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            444 44689999999999999999999997554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=92.24  E-value=0.13  Score=53.94  Aligned_cols=30  Identities=33%  Similarity=0.614  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|++++|.|++|+|||||+..+.
T Consensus        23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~   52 (552)
T TIGR03719        23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMA   52 (552)
T ss_pred             CceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            344789999999999999999999997554

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=92.21  E-value=0.13  Score=53.27  Aligned_cols=30  Identities=27%  Similarity=0.496  Sum_probs=25.6

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|++++|.|++|+|||||+.-+..
T Consensus       341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g  370 (529)
T TIGR02857       341 VSFTVPPGERVALVGPSGAGKSTLLNLLLG  370 (529)
T ss_pred             eeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            346789999999999999999999975543

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK08006 replicative DNA helicase; Provisional

Probab=92.21  E-value=0.21  Score=51.96  Aligned_cols=57  Identities=23%  Similarity=0.137  Sum_probs=44.3

Q ss_pred             ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957          208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE  265 (348)
Q Consensus       208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE  265 (348)
                      .-+.||+.-+|-++ -+.+|+=+.|=|.+|.|||+++.+++.|.+..+ +..|....-|
T Consensus       205 ~Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~-g~~V~~fSlE  262 (471)
T PRK08006        205 TGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ-DKPVLIFSLE  262 (471)
T ss_pred             CcccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecc
Confidence            34899999999964 788899999999999999999999999987433 3333333444

>cd04155 Arl3 Arl3 subfamily

Probab=92.20  E-value=0.12  Score=44.47  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +-.+--|++|+|++|+|||+|+..+..
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~   36 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLAS   36 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhc
Confidence            334456899999999999999987765

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00101 ureG urease accessory protein UreG

Probab=92.20  E-value=1  Score=41.25  Aligned_cols=23  Identities=48%  Similarity=0.690  Sum_probs=20.4

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +++|.|+.|+|||||+..++...
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRAL   25 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            78999999999999998887654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=92.18  E-value=0.13  Score=53.03  Aligned_cols=29  Identities=24%  Similarity=0.326  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        17 vs~~i~~Ge~~~liG~nGsGKSTLl~~l~   45 (491)
T PRK10982         17 VNLKVRPHSIHALMGENGAGKSTLLKCLF   45 (491)
T ss_pred             eeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence            44678999999999999999999997554

>PRK00889 adenylylsulfate kinase; Provisional

Probab=92.18  E-value=0.26  Score=43.38  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=23.0

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +|.-+.|.|.+|+||||++..+....
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l   28 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKL   28 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68889999999999999999887654

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=92.13  E-value=0.14  Score=53.49  Aligned_cols=31  Identities=23%  Similarity=0.433  Sum_probs=26.5

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+|++++|+|++|+|||||+.-+..
T Consensus       336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g  366 (544)
T TIGR01842       336 GISFRLQAGEALAIIGPSGSGKSTLARLIVG  366 (544)
T ss_pred             cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4457888999999999999999999976554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
1mab_B	479	Rat Liver F1-Atpase Length = 479		1e-117
2w6e_D	528	Low Resolution Structures Of Bovine Mitochondrial F		1e-115
1nbm_D	480	The Structure Of Bovine F1-Atpase Covalently Inhibi		1e-115
1cow_D	482	Bovine Mitochondrial F1-Atpase Complexed With Aurov		1e-115
1nbm_E	480	The Structure Of Bovine F1-Atpase Covalently Inhibi		1e-115
4asu_D	480	F1-Atpase In Which All Three Catalytic Sites Contai		1e-115
2xnd_D	467	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		1e-115
2xok_D	511	Refined Structure Of Yeast F1c10 Atpase Complex To		1e-106
3oeh_D	484	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		1e-106
3fks_D	484	Yeast F1 Atpase In The Absence Of Bound Nucleotides		1e-106
2hld_D	478	Crystal Structure Of Yeast Mitochondrial F1-Atpase		1e-106
4b2q_E	473	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		1e-106
4b2q_D	470	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		1e-106
2qe7_D	462	Crystal Structure Of The F1-Atpase From The Thermoa		7e-90
1sky_E	473	Crystal Structure Of The Nucleotide Free Alpha3beta		8e-90
3oaa_D	459	Structure Of The E.Coli F1-Atp Synthase Inhibited B		3e-82
1fx0_B	498	Crystal Structure Of The Chloroplast F1-Atpase From		1e-80
3oaa_A	513	Structure Of The E.Coli F1-Atp Synthase Inhibited B		7e-18
2obl_A	347	Structural And Biochemical Analysis Of A Prototypic		2e-17
2qe7_A	502	Crystal Structure Of The F1-Atpase From The Thermoa		8e-15
1sky_B	502	Crystal Structure Of The Nucleotide Free Alpha3beta		3e-14
2r9v_A	515	Crystal Structure Of Atp Synthase Subunit Alpha (Tm		5e-14
3mfy_A	588	Structural Characterization Of The Subunit A Mutant		4e-13
2xnd_A	492	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		4e-13
1cow_A	510	Bovine Mitochondrial F1-Atpase Complexed With Aurov		4e-13
2w6e_A	553	Low Resolution Structures Of Bovine Mitochondrial F		5e-13
1bmf_A	510	Bovine Mitochondrial F1-Atpase Length = 510		5e-13
1ohh_B	487	Bovine Mitochondrial F1-Atpase Complexed With The I		5e-13
2jiz_A	510	The Structure Of F1-Atpase Inhibited By Resveratrol		5e-13
3oee_A	510	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		6e-13
3ofn_A	510	Structure Of Four Mutant Forms Of Yeast F1 Atpase:		6e-13
4b2q_A	485	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		7e-13
2hld_A	510	Crystal Structure Of Yeast Mitochondrial F1-Atpase		7e-13
4b2q_B	486	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		7e-13
2xok_A	545	Refined Structure Of Yeast F1c10 Atpase Complex To		7e-13
3m4y_A	588	Structural Characterization Of The Subunit A Mutant		1e-12
2f43_A	510	Rat Liver F1-atpase Length = 510		1e-12
1mab_A	510	Rat Liver F1-Atpase Length = 510		1e-12
3ikj_A	588	Structural Characterization For The Nucleotide Bind		2e-12
1vdz_A	588	Crystal Structure Of A-Type Atpase Catalytic Subuni		2e-12
3se0_A	588	Structural Characterization Of The Subunit A Mutant		2e-12
3sdz_A	588	Structural Characterization Of The Subunit A Mutant		2e-12
3i4l_A	588	Structural Characterization For The Nucleotide Bind		2e-12
3qjy_A	588	Crystal Structure Of P-Loop G234a Mutant Of Subunit		8e-12
3qia_A	588	Crystal Structure Of P-Loop G237a Mutant Of Subunit		8e-12
3qg1_A	588	Crystal Structure Of P-Loop G239a Mutant Of Subunit		8e-12
3nd9_A	588	Structural Characterization For The Nucleotide Bind		9e-12
3nd8_A	588	Structural Characterization For The Nucleotide Bind		1e-11
2dpy_A	438	Crystal Structure Of The Flagellar Type Iii Atpase		5e-11
3a5c_A	578	Inter-Subunit Interaction And Quaternary Rearrangem		5e-10
1fx0_A	507	Crystal Structure Of The Chloroplast F1-Atpase From		9e-10
3vr6_A	600	Crystal Structure Of Amp-pnp Bound Enterococcus Hir		1e-09
3vr2_A	600	Crystal Structure Of Nucleotide-free A3b3 Complex F		2e-09
3gqb_A	578	Crystal Structure Of The A3b3 Complex From V-atpase		2e-09
3vr6_D	465	Crystal Structure Of Amp-pnp Bound Enterococcus Hir		2e-08
3gqb_B	464	Crystal Structure Of The A3b3 Complex From V-atpase		4e-07
3a5c_D	478	Inter-Subunit Interaction And Quaternary Rearrangem		7e-07
3ssa_A	460	Crystal Structure Of Subunit B Mutant N157t Of The		2e-06
3vr2_D	465	Crystal Structure Of Nucleotide-free A3b3 Complex F		5e-06
2rkw_A	469	Intermediate Position Of Atp On Its Trail To The Bi		6e-06
3tgw_A	460	Crystal Structure Of Subunit B Mutant H156a Of The		6e-06
2c61_A	469	Crystal Structure Of The Non-Catalytic B Subunit Of		6e-06
3tiv_A	460	Crystal Structure Of Subunit B Mutant N157a Of The		6e-06

>pdb|1MAB|B Chain B, Rat Liver F1-Atpase Length = 479

Iteration: 1
 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/257 (80%), Positives = 226/257 (87%), Gaps = 2/257 (0%)
Query: 86  AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
           A GQ+  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEG
Sbjct: 9   ATGQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEG 68
Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
           LVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + 
Sbjct: 69  LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSV 128
Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
           EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGE
Sbjct: 129 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188
Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
           RTREGNDLY EMIESGVI L D  A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD 
Sbjct: 189 RTREGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 246
Query: 326 EGQDVLLFIDNIFRFTQ 342
           EGQDVLLFIDNIFRFTQ
Sbjct: 247 EGQDVLLFIDNIFRFTQ 263

>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 528

Iteration: 1
 Score =  412 bits (1060), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/255 (80%), Positives = 224/255 (87%), Gaps = 2/255 (0%)
Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLV
Sbjct: 61  GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 120
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
           RGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ
Sbjct: 121 RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 180
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
           +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 181 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 240
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
           REGNDLY EMIESGVI L D  A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 241 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 298
Query: 328 QDVLLFIDNIFRFTQ 342
           QDVLLFIDNIFRFTQ
Sbjct: 299 QDVLLFIDNIFRFTQ 313

>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited With 4-Chloro-7-Nitrobenzofurazan Length = 480

Iteration: 1
 Score =  412 bits (1060), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/255 (80%), Positives = 224/255 (87%), Gaps = 2/255 (0%)
Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLV
Sbjct: 15  GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 74
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
           RGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ
Sbjct: 75  RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 134
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
           +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 135 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 194
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
           REGNDLY EMIESGVI L D  A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 195 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 252
Query: 328 QDVLLFIDNIFRFTQ 342
           QDVLLFIDNIFRFTQ
Sbjct: 253 QDVLLFIDNIFRFTQ 267

>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 482

Iteration: 1
 Score =  412 bits (1060), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/255 (80%), Positives = 224/255 (87%), Gaps = 2/255 (0%)
Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLV
Sbjct: 15  GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 74
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
           RGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ
Sbjct: 75  RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 134
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
           +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 135 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 194
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
           REGNDLY EMIESGVI L D  A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 195 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 252
Query: 328 QDVLLFIDNIFRFTQ 342
           QDVLLFIDNIFRFTQ
Sbjct: 253 QDVLLFIDNIFRFTQ 267

>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited With 4-Chloro-7-Nitrobenzofurazan Length = 480

Iteration: 1
 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/255 (80%), Positives = 224/255 (87%), Gaps = 2/255 (0%)
Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLV
Sbjct: 15  GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 74
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
           RGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ
Sbjct: 75  RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 134
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
           +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 135 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 194
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
           REGNDLY EMIESGVI L D  A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 195 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 252
Query: 328 QDVLLFIDNIFRFTQ 342
           QDVLLFIDNIFRFTQ
Sbjct: 253 QDVLLFIDNIFRFTQ 267

>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound Nucleotide, With Magnesium Ion Released In The Empty Site Length = 480

Iteration: 1
 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/255 (80%), Positives = 224/255 (87%), Gaps = 2/255 (0%)
Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLV
Sbjct: 13  GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 72
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
           RGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ
Sbjct: 73  RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 132
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
           +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 133 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 192
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
           REGNDLY EMIESGVI L D  A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 193 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 250
Query: 328 QDVLLFIDNIFRFTQ 342
           QDVLLFIDNIFRFTQ
Sbjct: 251 QDVLLFIDNIFRFTQ 265

>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 467

Iteration: 1
 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/255 (80%), Positives = 224/255 (87%), Gaps = 2/255 (0%)
Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLV
Sbjct: 3   GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 62
Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQ 207
           RGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ
Sbjct: 63  RGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 122
Query: 208 QILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267
           +ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERT
Sbjct: 123 EILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 182
Query: 268 REGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327
           REGNDLY EMIESGVI L D  A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EG
Sbjct: 183 REGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 240
Query: 328 QDVLLFIDNIFRFTQ 342
           QDVLLFIDNIFRFTQ
Sbjct: 241 QDVLLFIDNIFRFTQ 255

>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 511

Iteration: 1
 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/256 (74%), Positives = 217/256 (84%), Gaps = 4/256 (1%)
Query: 88  GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
           G+V  VIGA+VDV F++  LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGL
Sbjct: 44  GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 103
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
           VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++   PIH + P+F EQ+T 
Sbjct: 104 VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 163
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
            +IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 164 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 223
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
           TREGNDLYREM E+GVI L   + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 224 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 280
Query: 327 GQDVLLFIDNIFRFTQ 342
           GQDVLLFIDNIFRFTQ
Sbjct: 281 GQDVLLFIDNIFRFTQ 296

>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Beta-V279f Length = 484

Iteration: 1
 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/256 (74%), Positives = 217/256 (84%), Gaps = 4/256 (1%)
Query: 88  GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
           G+V  VIGA+VDV F++  LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGL
Sbjct: 17  GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 76
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
           VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++   PIH + P+F EQ+T 
Sbjct: 77  VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 136
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
            +IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 137 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 196
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
           TREGNDLYREM E+GVI L   + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 197 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 253
Query: 327 GQDVLLFIDNIFRFTQ 342
           GQDVLLFIDNIFRFTQ
Sbjct: 254 GQDVLLFIDNIFRFTQ 269

>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides Length = 484

Iteration: 1
 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/256 (74%), Positives = 217/256 (84%), Gaps = 4/256 (1%)
Query: 88  GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
           G+V  VIGA+VDV F++  LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGL
Sbjct: 17  GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 76
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
           VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++   PIH + P+F EQ+T 
Sbjct: 77  VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 136
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
            +IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 137 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 196
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
           TREGNDLYREM E+GVI L   + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 197 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 253
Query: 327 GQDVLLFIDNIFRFTQ 342
           GQDVLLFIDNIFRFTQ
Sbjct: 254 GQDVLLFIDNIFRFTQ 269

>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 478

Iteration: 1
 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/256 (74%), Positives = 217/256 (84%), Gaps = 4/256 (1%)
Query: 88  GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
           G+V  VIGA+VDV F++  LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGL
Sbjct: 11  GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 70
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
           VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++   PIH + P+F EQ+T 
Sbjct: 71  VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 130
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
            +IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 131 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 190
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
           TREGNDLYREM E+GVI L   + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 191 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 247
Query: 327 GQDVLLFIDNIFRFTQ 342
           GQDVLLFIDNIFRFTQ
Sbjct: 248 GQDVLLFIDNIFRFTQ 263

>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 473

Iteration: 1
 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/256 (74%), Positives = 217/256 (84%), Gaps = 4/256 (1%)
Query: 88  GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
           G+V  VIGA+VDV F++  LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGL
Sbjct: 6   GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 65
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
           VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++   PIH + P+F EQ+T 
Sbjct: 66  VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 125
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
            +IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 126 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 185
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
           TREGNDLYREM E+GVI L   + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 186 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 242
Query: 327 GQDVLLFIDNIFRFTQ 342
           GQDVLLFIDNIFRFTQ
Sbjct: 243 GQDVLLFIDNIFRFTQ 258

>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 470

Iteration: 1
 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/256 (74%), Positives = 217/256 (84%), Gaps = 4/256 (1%)
Query: 88  GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
           G+V  VIGA+VDV F++  LP IL ALE+     +LVLEVAQH+GE  VRTIAMDGTEGL
Sbjct: 6   GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGL 65
Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
           VRG++VL+TG PI+VPVGR TLGRI+NVIGEPIDE+G +K++   PIH + P+F EQ+T 
Sbjct: 66  VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTS 125
Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
            +IL TGIKVVDLLAPY RGGKIGLFGGAGVGKTV I ELINN+AKAHGGFSVF GVGER
Sbjct: 126 AEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGER 185
Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
           TREGNDLYREM E+GVI L   + +SK ALV+GQMNEPPGARARV LTGLT+AE+FRD E
Sbjct: 186 TREGNDLYREMKETGVINL---EGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEE 242
Query: 327 GQDVLLFIDNIFRFTQ 342
           GQDVLLFIDNIFRFTQ
Sbjct: 243 GQDVLLFIDNIFRFTQ 258

>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 462

Iteration: 1
 Score =  327 bits (837), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 166/257 (64%), Positives = 200/257 (77%), Gaps = 10/257 (3%)
Query: 88  GQVCQVIGAVVDVRFDEG-LPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
           G++ QV+G VVD++F+ G LP I  A+ +       L +E A H+G+ VVR +AM  T+G
Sbjct: 4   GRIIQVMGPVVDIQFESGQLPDIYNAITIERPQGGTLTVEAAVHLGDNVVRCVAMASTDG 63
Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
           LVRG   ++TG+PI+VPVG+ TLGR+ NV+GEPIDE+G++  E   PIHR AP F E +T
Sbjct: 64  LVRGLEAVDTGAPISVPVGKATLGRVFNVLGEPIDEQGEVNAEERHPIHRPAPEFEELST 123
Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
             +IL TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINNVA+ HGG SVFAGVGE
Sbjct: 124 ADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGE 183
Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
           RTREGNDLY EM +SGVI        SK ++V+GQMNEPPGAR RV LTGLT+AE+FRD 
Sbjct: 184 RTREGNDLYHEMKDSGVI--------SKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDR 235
Query: 326 EGQDVLLFIDNIFRFTQ 342
           EGQDVLLFIDNIFRFTQ
Sbjct: 236 EGQDVLLFIDNIFRFTQ 252

>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3 Sub-Complex Of F1-Atpase From The Thermophilic Bacillus Ps3 Length = 473

Iteration: 1
 Score =  327 bits (837), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 174/265 (65%), Positives = 205/265 (77%), Gaps = 19/265 (7%)
Query: 88  GQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVR--------LVLEVAQHMGEGVVRTI 138
           G+V QV+G VVDV+F+ G LP I  AL++  H  R        L LEVA H+G+  VRTI
Sbjct: 4   GRVIQVMGPVVDVKFENGHLPAIYNALKI-QHKARNENEVDIDLTLEVALHLGDDTVRTI 62
Query: 139 AMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREA 197
           AM  T+GL+RG  V++TG+PI+VPVG+VTLGR+ NV+GEPID +GD+  +    PIHR A
Sbjct: 63  AMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPA 122
Query: 198 PAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF 257
           P F E ATE +IL TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELI+N+A+ HGG 
Sbjct: 123 PKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182
Query: 258 SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317
           SVFAGVGERTREGNDLY EM +SGVI        SK A+V+GQMNEPPGAR RV LTGLT
Sbjct: 183 SVFAGVGERTREGNDLYHEMKDSGVI--------SKTAMVFGQMNEPPGARMRVALTGLT 234
Query: 318 VAEHFRDAEGQDVLLFIDNIFRFTQ 342
           +AE+FRD +GQD LLFIDNIFRFTQ
Sbjct: 235 MAEYFRDEQGQDGLLFIDNIFRFTQ 259

>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 459

Iteration: 1
 Score =  301 bits (772), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/257 (60%), Positives = 191/257 (74%), Gaps = 10/257 (3%)
Query: 86  AIGQVCQVIGAVVDVRF-DEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTE 144
           A G++ QVIGAVVDV F  + +P +  ALEV + + RLVLEV Q +G G+VRTIAM  ++
Sbjct: 1   ATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQQQLGGGIVRTIAMGSSD 60
Query: 145 GLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQA 204
           GL RG  V +   PI VPVG  TLGRIMNV+GEP+D KG++  E    IHR AP++ E +
Sbjct: 61  GLRRGLDVKDLEHPIEVPVGEATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELS 120
Query: 205 TEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264
             Q++L TGIKV+DL+ P+ +GGK+GLFGGAGVGKTV +MELI N+A  H G+SVFAGVG
Sbjct: 121 NSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 180
Query: 265 ERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324
           ERTREGND Y EM +S VI         K +LVYGQMNEPPG R RV LTGLT+AE FRD
Sbjct: 181 ERTREGNDFYHEMTDSNVI--------DKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRD 232
Query: 325 AEGQDVLLFIDNIFRFT 341
            EG+DVLLF+DNI+R+T
Sbjct: 233 -EGRDVLLFVDNIYRYT 248

>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From Spinach Length = 498

Iteration: 1
 Score =  296 bits (757), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 164/265 (61%), Positives = 193/265 (72%), Gaps = 7/265 (2%)
Query: 84  KGAIGQVCQVIGAVVDVRFDEG-LPPILTAL-----EVVDHSVRLVLEVAQHMGEGVVRT 137
           K  +G++ Q+IG V++V F  G +P I  AL     +     + +  EV Q +G   VR 
Sbjct: 17  KKNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRA 76
Query: 138 IAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREA 197
           +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+D    + T    PIHR A
Sbjct: 77  VAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSA 136
Query: 198 PAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF 257
           PAF +  T+  I  TGIKVV+LLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAHGG 
Sbjct: 137 PAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGV 196
Query: 258 SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317
           SVF GVGERTREGNDLY EM ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT
Sbjct: 197 SVFGGVGERTREGNDLYMEMKESGVIN-EQNIAESKVALVYGQMNEPPGARMRVGLTALT 255
Query: 318 VAEHFRDAEGQDVLLFIDNIFRFTQ 342
           +AE+FRD   QDVLLFIDNIFRF Q
Sbjct: 256 MAEYFRDVNEQDVLLFIDNIFRFVQ 280

>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 513

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 14/226 (6%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
           +A ++    V  + M     L  G +V  TG  + VPVGR  LGR++N +G PID KG L
Sbjct: 62  IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
             + +  +   AP  +E+ +  Q + TG K VD + P  RG +  + G    GKT L ++
Sbjct: 122 DHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAID 181
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
            I N  +  G   ++  +G++    +++ R++ E G +        +   +V    +E  
Sbjct: 182 AIIN-QRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL--------ANTIVVVATASESA 232
Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
             +      G  + E+FRD  G+D L+  D++ +    + Q+S +L
Sbjct: 233 ALQYLAPYAGCAMGEYFRD-RGEDALIIYDDLSKQAVAYRQISLLL 277

>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical Atpase From The Type Iii Secretion System Of Pathogenic Bacteria Length = 347

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 20/186 (10%)
Query: 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHR----EAPAFVEQATEQQILVTGIKVVD 218
           VG   LGR+++ IG P++         YLP  R    E P  + +    Q  + G++ +D
Sbjct: 7   VGDALLGRLIDGIGRPMESN---IVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAID 63
Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278
            L     G +IG+F G+GVGK+ L+  + N    A     V A +GER RE N+    + 
Sbjct: 64  GLLTCGIGQRIGIFAGSGVGKSTLLGMICNG---ASADIIVLALIGERGREVNEFLALLP 120
Query: 279 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIF 338
           +S +         SKC LV    + P   R +   T  T+AE+FRD +G++VLL +D++ 
Sbjct: 121 QSTL---------SKCVLVVTTSDRPALERMKAAFTATTIAEYFRD-QGKNVLLMMDSVT 170
Query: 339 RFTQVS 344
           R+ + +
Sbjct: 171 RYARAA 176

>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 502

Iteration: 1
 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 16/230 (6%)
Query: 123 VLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK 182
           V+ +AQ++ E  V  + +     +  G +V  TG  + VPVG   LGR++N +G+P+D +
Sbjct: 59  VMGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGR 118
Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
           G ++T  Y PI   AP  +++ +  + L TGIK +D + P  RG +  + G    GKT +
Sbjct: 119 GPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTI 178
Query: 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK-LGDKQADSKCALVYGQM 301
            ++ I N  K      ++  +G+         ++   +GV++ L    A     +V    
Sbjct: 179 AIDTIIN-QKGQDVICIYVAIGQ---------KQSTVAGVVETLRQHDALDYTIVVTASA 228
Query: 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
           +EP          G  + E+F   +G+  L+  D++ +    + ++S +L
Sbjct: 229 SEPAPLLYLAPYAGCAMGEYFM-YKGKHALVVYDDLSKQAAAYRELSLLL 277

>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3 Sub-Complex Of F1-Atpase From The Thermophilic Bacillus Ps3 Length = 502

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 14/229 (6%)
Query: 123 VLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEK 182
           V+ +A ++ E  V  + +    G+  G  V  TG  + VPVG   +GR++N +G+P+D  
Sbjct: 59  VMGMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGL 118
Query: 183 GDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
           G ++T    PI   AP  +++ +  + L TGIK +D L P  RG +  + G    GKT +
Sbjct: 119 GPVETTETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSV 178
Query: 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302
            ++ I N  K      ++  +G++           + + V  L    A     +V    +
Sbjct: 179 AIDTIIN-QKDQNMICIYVAIGQK--------ESTVATVVETLAKHGAPDYTIVVTASAS 229
Query: 303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
           +P          G+ + E+F    G+ VL+ ID++ +    + Q+S +L
Sbjct: 230 QPAPLLFLAPYAGVAMGEYFM-IMGKHVLVVIDDLSKQAAAYRQLSLLL 277

>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612) From Thermotoga Maritima At 2.10 A Resolution Length = 515

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 14/225 (6%)
Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
           VA ++ E  V  I +   + +  G  V      I VPVG   LGR++N +GEP+D KG +
Sbjct: 75  VAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPI 134
Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
             +++ PI  +AP  + +      L TGIK +D   P  RG +  + G    GKT + ++
Sbjct: 135 NAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIAID 194
Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
            I N  K  G + ++  +G++        +  I   + KL    A     +V    ++P 
Sbjct: 195 TIIN-QKGQGVYCIYVAIGQK--------KSAIARIIDKLRQYGAXEYTTVVVASASDPA 245
Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFI 346
             +      G    E+F  + G+D L+  D++ +    + Q+S +
Sbjct: 246 SLQYIAPYAGCAXGEYFAYS-GRDALVVYDDLSKHAVAYRQLSLL 289

>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a Of The A-Atp Synthase From Pyrococcus Horikoshii Length = 588

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G AG GKTV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGPAGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 492

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
           G + L++ G  V  TG+ + VPVG   LGR+++ +G  ID KG + ++    +  +AP  
Sbjct: 59  GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 118
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
           + + + ++ + TGIK VD L P  RG +  + G    GKT + ++ I N  + + G    
Sbjct: 119 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 178
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
              + ++  +G++        R  +   V +L D  A     +V    ++    +     
Sbjct: 179 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 230
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
           +G ++ E+FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 231 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLL 267

>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 510

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
           G + L++ G  V  TG+ + VPVG   LGR+++ +G  ID KG + ++    +  +AP  
Sbjct: 77  GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
           + + + ++ + TGIK VD L P  RG +  + G    GKT + ++ I N  + + G    
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
              + ++  +G++        R  +   V +L D  A     +V    ++    +     
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
           +G ++ E+FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLL 285

>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 553

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
           G + L++ G  V  TG+ + VPVG   LGR+++ +G  ID KG + ++    +  +AP  
Sbjct: 120 GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 179
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
           + + + ++ + TGIK VD L P  RG +  + G    GKT + ++ I N  + + G    
Sbjct: 180 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 239
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
              + ++  +G++        R  +   V +L D  A     +V    ++    +     
Sbjct: 240 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 291
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
           +G ++ E+FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 292 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLL 328

>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase Length = 510

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
           G + L++ G  V  TG+ + VPVG   LGR+++ +G  ID KG + ++    +  +AP  
Sbjct: 77  GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
           + + + ++ + TGIK VD L P  RG +  + G    GKT + ++ I N  + + G    
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
              + ++  +G++        R  +   V +L D  A     +V    ++    +     
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
           +G ++ E+FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLL 285

>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor Protein If1 Length = 487

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
           G + L++ G  V  TG+ + VPVG   LGR+++ +G  ID KG + ++    +  +AP  
Sbjct: 54  GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 113
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
           + + + ++ + TGIK VD L P  RG +  + G    GKT + ++ I N  + + G    
Sbjct: 114 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 173
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
              + ++  +G++        R  +   V +L D  A     +V    ++    +     
Sbjct: 174 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 225
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
           +G ++ E+FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 226 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLL 262

>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol. Length = 510

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
           G + L++ G  V  TG+ + VPVG   LGR+++ +G  ID KG + ++    +  +AP  
Sbjct: 77  GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
           + + + ++ + TGIK VD L P  RG +  + G    GKT + ++ I N  + + G    
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
              + ++  +G++        R  +   V +L D  A     +V    ++    +     
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
           +G ++ E+FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLL 285

>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-F405s Length = 510

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 21/222 (9%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
           I + G++ LV+ G+ V  TG+ + VPVG   LGR+++ +G PID KG +          +
Sbjct: 75  IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
           AP  + + +  + + TG+K VD L P  RG +  + G    GKT + ++ I N  + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
                  + V+  VG++        R  +   V  L    A     +V    +E    + 
Sbjct: 195 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 246
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
               T  ++ E FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 247 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLL 287

>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-N67i Length = 510

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 21/222 (9%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
           I + G++ LV+ G+ V  TG+ + VPVG   LGR+++ +G PID KG +          +
Sbjct: 75  IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
           AP  + + +  + + TG+K VD L P  RG +  + G    GKT + ++ I N  + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
                  + V+  VG++        R  +   V  L    A     +V    +E    + 
Sbjct: 195 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 246
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
               T  ++ E FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 247 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLL 287

>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 485

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 21/222 (9%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
           I + G++ LV+ G+ V  TG+ + VPVG   LGR+++ +G PID KG +          +
Sbjct: 50  IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 109
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
           AP  + + +  + + TG+K VD L P  RG +  + G    GKT + ++ I N  + + G
Sbjct: 110 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 169
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
                  + V+  VG++        R  +   V  L    A     +V    +E    + 
Sbjct: 170 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 221
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
               T  ++ E FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 222 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLL 262

>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 510

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 21/222 (9%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
           I + G++ LV+ G+ V  TG+ + VPVG   LGR+++ +G PID KG +          +
Sbjct: 75  IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 134
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
           AP  + + +  + + TG+K VD L P  RG +  + G    GKT + ++ I N  + + G
Sbjct: 135 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 194
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
                  + V+  VG++        R  +   V  L    A     +V    +E    + 
Sbjct: 195 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 246
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
               T  ++ E FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 247 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLL 287

>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 486

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 21/222 (9%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
           I + G++ LV+ G+ V  TG+ + VPVG   LGR+++ +G PID KG +          +
Sbjct: 51  IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 110
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
           AP  + + +  + + TG+K VD L P  RG +  + G    GKT + ++ I N  + + G
Sbjct: 111 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 170
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
                  + V+  VG++        R  +   V  L    A     +V    +E    + 
Sbjct: 171 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 222
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
               T  ++ E FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 223 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLL 263

>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 545

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 21/222 (9%)
Query: 138 IAMDGTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHRE 196
           I + G++ LV+ G+ V  TG+ + VPVG   LGR+++ +G PID KG +          +
Sbjct: 110 IVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVK 169
Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
           AP  + + +  + + TG+K VD L P  RG +  + G    GKT + ++ I N  + + G
Sbjct: 170 APGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNG 229
Query: 257 -------FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309
                  + V+  VG++        R  +   V  L    A     +V    +E    + 
Sbjct: 230 SDESKKLYCVYVAVGQK--------RSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQY 281
Query: 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
               T  ++ E FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 282 LAPFTAASIGEWFRD-NGKHALIVYDDLSKQAVAYRQLSLLL 322

>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a Of The A-Atp Synthase Length = 588

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G  G GKTV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGAFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|2F43|A Chain A, Rat Liver F1-atpase Length = 510

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
           G + L++ G  V  TG+ + VPVG   LGR+++ +G  ID KG + ++    +  +AP  
Sbjct: 77  GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
           + + + ++ + TGIK VD L P  RG +  + G    GKT + ++ I N  + + G    
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
              + ++  +G++        R  +   V +L D  A     +V    ++    +     
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
           +G ++ E+FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLL 285

>pdb|1MAB|A Chain A, Rat Liver F1-Atpase Length = 510

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 142 GTEGLVR-GQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAF 200
           G + L++ G  V  TG+ + VPVG   LGR+++ +G  ID KG + ++    +  +AP  
Sbjct: 77  GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGI 136
Query: 201 VEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---- 256
           + + + ++ + TGIK VD L P  RG +  + G    GKT + ++ I N  + + G    
Sbjct: 137 IPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEK 196
Query: 257 ---FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
              + ++  +G++        R  +   V +L D  A     +V    ++    +     
Sbjct: 197 KKLYCIYVAIGQK--------RSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPY 248
Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFR----FTQVSFIL 347
           +G ++ E+FRD  G+  L+  D++ +    + Q+S +L
Sbjct: 249 SGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLL 285

>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A Mutant S238a Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G  G GKTV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGPFGAGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A From Pyrococcus Horikoshii Ot3 Length = 588

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G  G GKTV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w Of The A-Atp Synthase From Pyrococcus Horikoshii Length = 588

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G  G GKTV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w Of The A-Atp Synthase From Pyrococcus Horikoshii Length = 588

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G  G GKTV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A With Amp-Pnp Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G  G GKTV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   +    G GKTV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPAPFGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G    GKTV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGPFASGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G  G  KTV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGPFGSAKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G  G GK V   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGPFGSGKAVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A Of The A1ao Atp Synthase Length = 588

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPY 223
           G  T+  ++  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P 
Sbjct: 166 GDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQ 224
Query: 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283
            +GG   + G  G G TV   +L      +     ++ G GER  E  D+  E  +    
Sbjct: 225 AKGGTAAIPGPFGSGATVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDP 281
Query: 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           K G K    +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 282 KTG-KPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM-GYDVALMADSTSRWAE 338

>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii Length = 438

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 39/221 (17%)
Query: 138 IAMDGTEGLVRGQRV---------LNTGSPITVPVGRVTLGRIMNVIGEPID-------- 180
           + ++  EG++ G RV         L +G    +P+G   LGR+++  G+P+D        
Sbjct: 62  MPLEEVEGILPGARVYARNGHGDGLQSGK--QLPLGPALLGRVLDGGGKPLDGLPAPDTL 119
Query: 181 EKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240
           E G L T  + P+ R           + +L TG++ ++ L    RG ++GLF G+GVGK+
Sbjct: 120 ETGALITPPFNPLQR--------TPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKS 171
Query: 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ 300
           VL + ++    +A     V   +GER RE  D    ++             ++  ++   
Sbjct: 172 VL-LGMMARYTRAD--VIVVGLIGERGREVKDFIENIL--------GPDGRARSVVIAAP 220
Query: 301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341
            +  P  R +       +AE FRD  GQ VLL +D++ R+ 
Sbjct: 221 ADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLIMDSLTRYA 260

>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement Defined By The Central Stalk Of Prokaryotic V1-Atpase Length = 578

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 8/165 (4%)
Query: 179 IDEKGDLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGV 237
           +++  +LK  H  P+ R  P  V++  +     +TG++++D+L P   GG   + G  G 
Sbjct: 175 LEDGTELKMYHTWPVRRARP--VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGS 232
Query: 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297
           GKTV    L      ++    V+ G GER  E  D+  E  E    K G      +  L+
Sbjct: 233 GKTVTQQSLAK---WSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTGGPLM-HRTVLI 288
Query: 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
               N P  AR      G+T+AE+FRD +G  V L  D+  R+ +
Sbjct: 289 ANTSNMPVAAREASIYVGVTIAEYFRD-QGFSVALMADSTSRWAE 332

>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From Spinach Length = 507

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 37/255 (14%)
Query: 100 VRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159
           V F+EG   I  AL +  ++V +VL     MG+G++          +  G  V  TG   
Sbjct: 54  VEFEEG--TIGIALNLESNNVGVVL-----MGDGLM----------IQEGSSVKATGRIA 96
Query: 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDL 219
            +PV    LGR++N + +PID +G++       I   AP  + + +  + L TG+  +D 
Sbjct: 97  QIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDA 156
Query: 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279
           + P  RG +  + G    GKT +  + I N  +      V+  +G++      +     E
Sbjct: 157 MIPVGRGQRELIIGDRQTGKTAVATDTILN-QQGQNVICVYVAIGQKASSVAQVVTNFQE 215
Query: 280 SGVIKLG---DKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN 336
            G ++      + ADS   L Y               TG  +AE+F   E   ++++ D+
Sbjct: 216 RGAMEYTIVVAETADSPATLQY-----------LAPYTGAALAEYFMYRERHTLIIY-DD 263
Query: 337 IFR----FTQVSFIL 347
           + +    + Q+S +L
Sbjct: 264 LSKQAQAYRQMSLLL 278

>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae V1-atpase [bv1] Length = 600

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 10/161 (6%)
Query: 184 DLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
           +L      P+ R  P  ++Q     + ++TG +V+D   P  +GG   + G  G GKTV 
Sbjct: 191 ELTMMQKWPVRRGRP--IKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTV- 247
Query: 243 IMELINNVAKAHG-GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301
              + + +AK       V+ G GER  E  D+  E  E      G+   + +  L+    
Sbjct: 248 ---VQHQIAKWSDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLME-RTVLIANTS 303
Query: 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           N P  AR     TG+T+AE+FRD  G DV +  D+  R+ +
Sbjct: 304 NMPVAAREASIYTGITIAEYFRDM-GYDVAIMADSTSRWAE 343

>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From Enterococcus Hirae V-atpase [ea3b3] Length = 600

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 10/161 (6%)
Query: 184 DLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242
           +L      P+ R  P  ++Q     +  +TG +V+D   P  +GG   + G  G GKTV 
Sbjct: 191 ELTXXQKWPVRRGRP--IKQKLNPDVPXITGQRVIDTFFPVTKGGAAAVPGPFGAGKTV- 247
Query: 243 IMELINNVAKAHG-GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301
              + + +AK       V+ G GER  E  D+  E  E      G+   + +  L+    
Sbjct: 248 ---VQHQIAKWSDVDLVVYVGCGERGNEXTDVVNEFPELIDPNTGESLXE-RTVLIANTS 303
Query: 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           N P  AR     TG+T+AE+FRD  G DV +  D+  R+ +
Sbjct: 304 NXPVAAREASIYTGITIAEYFRDX-GYDVAIXADSTSRWAE 343

>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase Length = 578

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 8/165 (4%)
Query: 179 IDEKGDLKTEHYLPIHREAPAFVEQATEQQI-LVTGIKVVDLLAPYQRGGKIGLFGGAGV 237
           +++  +LK  H  P+ R  P  V++  +     +TG++++D+L P   GG   + G  G 
Sbjct: 175 LEDGTELKMYHTWPVRRARP--VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGS 232
Query: 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297
           GK+V    L      ++    V+ G GER  E  D+  E  E    K G      +  L+
Sbjct: 233 GKSVTQQSLAK---WSNADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLM-HRTVLI 288
Query: 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
               N P  AR      G+T+AE+FRD +G  V L  D+  R+ +
Sbjct: 289 ANTSNMPVAAREASIYVGVTIAEYFRD-QGFSVALMADSTSRWAE 332

>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae V1-atpase [bv1] Length = 465

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 12/207 (5%)
Query: 140 MDGTEGL-VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 198
            +GT G+ ++   V   G P+ + V    +GR+ + +G P D   ++  E YL I+ E  
Sbjct: 64  FEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVI 123
Query: 199 AFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN--VAKAHGG 256
             + +    + + TGI  +D L    RG K+ +F G+G+    L  ++     V  +   
Sbjct: 124 NPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDD 183
Query: 257 FS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315
           F+ VFA +G    E      +  ++G I         +  +     N+P   R       
Sbjct: 184 FAVVFAAIGITFEEAEFFMEDFRQTGAI--------DRSVMFMNLANDPAIERIATPRMA 235
Query: 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           LT AE+    +G  VL+ + ++  + +
Sbjct: 236 LTAAEYLAYEKGMHVLVIMTDMTNYAE 262

>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase Length = 464

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAP 222
           V +  LGR  N IG+PID    +  E  LPI       V +   +Q + TGI  +D++  
Sbjct: 84  VSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNT 143
Query: 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA----------KAHGGFSVFAGVGERTREGND 272
             RG K+ +F G+G+    +  ++               K      VFA +G   RE + 
Sbjct: 144 LVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSY 203
Query: 273 LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLL 332
             +E   +G +        S+  L   + ++P   R       LTVAE+        VL+
Sbjct: 204 FIQEFERTGAL--------SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLV 255
Query: 333 FIDNIFRFTQ 342
            + ++  +++
Sbjct: 256 ILTDMTNYSE 265

>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement Defined By The Central Stalk Of Prokaryotic V1-Atpase Length = 478

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 18/190 (9%)
Query: 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAP 222
           V +  LGR  N IG+PID    +  E  LPI       V +   +Q + TGI  +D++  
Sbjct: 84  VSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNT 143
Query: 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA----------KAHGGFSVFAGVGERTREGND 272
             RG K+ +F G+G+    +  ++               K      VFA +G   RE + 
Sbjct: 144 LVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSY 203
Query: 273 LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLL 332
             +E   +G +        S+  L   + ++P   R       LTVAE+        VL+
Sbjct: 204 FIQEFERTGAL--------SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLV 255
Query: 333 FIDNIFRFTQ 342
            + ++  + +
Sbjct: 256 ILTDMTNYCE 265

>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao Atp Synthase Length = 460

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 11/206 (5%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
            +GT GL +   V+ TG  + +P     LGRI++  GEP D    +  +  L I+  A  
Sbjct: 57  FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
              +   +  + TGI  +D      RG K+ +F  +G+  T + +++    +V  +   F
Sbjct: 117 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHTEIALQIARQASVPGSESAF 176
Query: 258 S-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
           + VFA +G    E      +  ++G ++        +  +     ++P   R       L
Sbjct: 177 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 228
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           T AE+     G  VL+ + +I  + +
Sbjct: 229 TAAEYLAYEHGMHVLVILTDITNYAE 254

>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From Enterococcus Hirae V-atpase [ea3b3] Length = 465

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 12/207 (5%)
Query: 140 MDGTEGL-VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAP 198
            +GT G+ ++   V   G P+ + V    +GR+ + +G P D   ++  E YL I+ E  
Sbjct: 64  FEGTSGINLKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRPKDNGPEILPEKYLDINGEVI 123
Query: 199 AFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN--VAKAHGG 256
             + +    + + TGI  +D L    RG K+ +F G+G+    L  ++     V  +   
Sbjct: 124 NPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDD 183
Query: 257 FS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315
           F+ VFA +G    E      +  ++G I         +        N+P   R       
Sbjct: 184 FAVVFAAIGITFEEAEFFXEDFRQTGAI--------DRSVXFXNLANDPAIERIATPRXA 235
Query: 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           LT AE+    +G  VL+   +   + +
Sbjct: 236 LTAAEYLAYEKGXHVLVIXTDXTNYAE 262

>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding Pocket Inside The Subunit B Mutant R416w Of The Energy Converter A1ao Atp Synthase Length = 469

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 11/206 (5%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
            +GT GL +   V+ TG  + +P     LGRI++  GEP D    +  +  L I+  A  
Sbjct: 66  FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
              +   +  + TGI  +D      RG K+ +F  +G+    + +++    +V  +   F
Sbjct: 126 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAF 185
Query: 258 S-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
           + VFA +G    E      +  ++G ++        +  +     ++P   R       L
Sbjct: 186 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 237
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           T AE+     G  VL+ + +I  + +
Sbjct: 238 TAAEYLAYEHGMHVLVILTDITNYAE 263

>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao Atp Synthase Length = 460

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 11/206 (5%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
            +GT GL +   V+ TG  + +P     LGRI++  GEP D    +  +  L I+  A  
Sbjct: 57  FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
              +   +  + TGI  +D      RG K+ +F  +G+    + +++    +V  +   F
Sbjct: 117 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPANEIALQIARQASVPGSESAF 176
Query: 258 S-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
           + VFA +G    E      +  ++G ++        +  +     ++P   R       L
Sbjct: 177 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 228
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           T AE+     G  VL+ + +I  + +
Sbjct: 229 TAAEYLAYEHGMHVLVILTDITNYAE 254

>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type Atpase From M. Mazei Go1 Length = 469

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 11/206 (5%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
            +GT GL +   V+ TG  + +P     LGRI++  GEP D    +  +  L I+  A  
Sbjct: 66  FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
              +   +  + TGI  +D      RG K+ +F  +G+    + +++    +V  +   F
Sbjct: 126 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAF 185
Query: 258 S-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
           + VFA +G    E      +  ++G ++        +  +     ++P   R       L
Sbjct: 186 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 237
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           T AE+     G  VL+ + +I  + +
Sbjct: 238 TAAEYLAYEHGMHVLVILTDITNYAE 263

>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao Atp Synthase Length = 460

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 11/206 (5%)
Query: 140 MDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
            +GT GL +   V+ TG  + +P     LGRI++  GEP D    +  +  L I+  A  
Sbjct: 57  FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 116
Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGF 257
              +   +  + TGI  +D      RG K+ +F  +G+    + +++    +V  +   F
Sbjct: 117 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHAEIALQIARQASVPGSESAF 176
Query: 258 S-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
           + VFA +G    E      +  ++G ++        +  +     ++P   R       L
Sbjct: 177 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 228
Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           T AE+     G  VL+ + +I  + +
Sbjct: 229 TAAEYLAYEHGMHVLVILTDITNYAE 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	0.0
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	1e-180
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	1e-168
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	3e-82
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	1e-06
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	3e-76
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	3e-12
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	5e-55
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	7e-38
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	1e-34
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	5e-34
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	2e-18
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	3e-18
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	4e-18
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	3e-17
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	3e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1pyv_A	54	ATP synthase beta chain, mitochondrial precursor;	1e-05

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... Length = 482

 Score =  525 bits (1355), Expect = 0.0
 Identities = 206/269 (76%), Positives = 226/269 (84%), Gaps = 2/269 (0%)

Query: 74  GGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEG 133
             + +         G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE 
Sbjct: 1   AAQASPSPKAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGES 60

Query: 134 VVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPI 193
            VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  I
Sbjct: 61  TVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAI 120

Query: 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253
           H EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct: 121 HAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 180

Query: 254 HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
           HGG+SVFAGVGERTREGNDLY EMIESGVI L D  A SK ALVYGQMNEPPGARARV L
Sbjct: 181 HGGYSVFAGVGERTREGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVAL 238

Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           TGLTVAE+FRD EGQDVLLFIDNIFRFTQ
Sbjct: 239 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQ 267

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* Length = 498

 Score =  506 bits (1306), Expect = e-180
 Identities = 165/267 (61%), Positives = 193/267 (72%), Gaps = 7/267 (2%)

Query: 82  TGKGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVV 135
             K  +G++ Q+IG V++V F  G +P I  AL V         + +  EV Q +G   V
Sbjct: 15  LEKKNLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRV 74

Query: 136 RTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHR 195
           R +AM  T+GL RG  V++TG+P++VPVG  TLGRI NV+GEP+D    + T    PIHR
Sbjct: 75  RAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHR 134

Query: 196 EAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG 255
            APAF +  T+  I  TGIKVV+LLAPY+RGGKIGLFGGAGVGKTVLIMELINN+AKAHG
Sbjct: 135 SAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHG 194

Query: 256 GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315
           G SVF GVGERTREGNDLY EM ESGVI      A+SK ALVYGQMNEPPGAR RVGLT 
Sbjct: 195 GVSVFGGVGERTREGNDLYMEMKESGVINE-QNIAESKVALVYGQMNEPPGARMRVGLTA 253

Query: 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           LT+AE+FRD   QDVLLFIDNIFRF Q
Sbjct: 254 LTMAEYFRDVNEQDVLLFIDNIFRFVQ 280

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Length = 473

 Score =  477 bits (1230), Expect = e-168
 Identities = 172/266 (64%), Positives = 205/266 (77%), Gaps = 17/266 (6%)

Query: 86  AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-------VRLVLEVAQHMGEGVVRT 137
             G+V QV+G VVDV+F+ G LP I  AL++   +       + L LEVA H+G+  VRT
Sbjct: 2   TRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRT 61

Query: 138 IAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHRE 196
           IAM  T+GL+RG  V++TG+PI+VPVG+VTLGR+ NV+GEPID +GD+  +    PIHR 
Sbjct: 62  IAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRP 121

Query: 197 APAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 256
           AP F E ATE +IL TGIKVVDLLAPY +GGKIGLFGGAGVGKTVLI ELI+N+A+ HGG
Sbjct: 122 APKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGG 181

Query: 257 FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
            SVFAGVGERTREGNDLY EM +SGVI        SK A+V+GQMNEPPGAR RV LTGL
Sbjct: 182 ISVFAGVGERTREGNDLYHEMKDSGVI--------SKTAMVFGQMNEPPGARMRVALTGL 233

Query: 317 TVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           T+AE+FRD +GQD LLFIDNIFRFTQ
Sbjct: 234 TMAEYFRDEQGQDGLLFIDNIFRFTQ 259

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Length = 578

 Score =  260 bits (665), Expect = 3e-82
 Identities = 65/286 (22%), Positives = 106/286 (37%), Gaps = 29/286 (10%)

Query: 80  EFTGKGAIGQVCQVIGAVVDVRFDEG-LPPILTALEVV------DHSVRLVLEVAQHMGE 132
           E T    +G+     G  + V    G L  I   ++           + +   V  H  +
Sbjct: 53  EDTSGLKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLERIREKTGIYITRGVVVHALD 112

Query: 133 GVVR---TIAMDGTEGLVRGQ---RVLNTGSPITVPVGRVTLGRIMNVIGE--------- 177
              +   T  +   + +  G     V   G    + V     GR+  V            
Sbjct: 113 REKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYTVEEPV 172

Query: 178 -PIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236
             +++  +LK  H  P+ R  P    +       +TG++++D+L P   GG   + G  G
Sbjct: 173 VVLEDGTELKMYHTWPVRRARPVQ-RKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFG 231

Query: 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCAL 296
            GK+V    L      ++    V+ G GER  E  D+  E  E    K G      +  L
Sbjct: 232 SGKSVTQQSLAKW---SNADVVVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMH-RTVL 287

Query: 297 VYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
           +    N P  AR      G+T+AE+FRD +G  V L  D+  R+ +
Sbjct: 288 IANTSNMPVAAREASIYVGVTIAEYFRD-QGFSVALMADSTSRWAE 332

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Length = 578

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G + ++ G  V  +   G   +    +V +    LV E+ +  G+     +  D T GL 
Sbjct: 4   GVIQKIAGPAVIAKGMLG-ARMYDISKVGEE--GLVGEIIRLDGDTAFVQVYED-TSGLK 59

Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE 181
            G+ V++TG P+ V +G   L  I + I  P++ 
Sbjct: 60  VGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLER 93

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Length = 588

 Score =  244 bits (624), Expect = 3e-76
 Identities = 66/291 (22%), Positives = 110/291 (37%), Gaps = 34/291 (11%)

Query: 80  EFTGKGAIGQVCQVIGAVVDVRFDEG-LPPILTALEV---------------------VD 117
           E T     G+     GA + V      L  I   ++                      + 
Sbjct: 54  EETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALP 113

Query: 118 HSVRLVLEVAQHMGEGVVR--TIAMDGTEGLVRGQRVLNTGSPITV----PVGRVTLGRI 171
              +        +G+ VV    I       ++  + ++  G    +      G  T+  +
Sbjct: 114 RDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEV 173

Query: 172 MNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL 231
           +  +  P  E  +LK     P+  + P + E+   +  L+TG +V+D   P  +GG   +
Sbjct: 174 IAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAI 232

Query: 232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291
            G AG GKTV   +L      +     ++ G GER  E  D+  E  +    K G    +
Sbjct: 233 PGPAGSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLME 289

Query: 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
            +  L+    N P  AR     TG+T+AE+FRD  G DV L  D+  R+ +
Sbjct: 290 -RTVLIANTSNMPVAAREASIYTGITIAEYFRD-MGYDVALMADSTSRWAE 338

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Length = 588

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 5/112 (4%)

Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G++ +V G +V     +G   +   + V +    L+ E+ +  G+  V  +  + T G+ 
Sbjct: 5   GRIIRVTGPLVVADGMKG-AKMYEVVRVGEL--GLIGEIIRLEGDKAVIQVYEE-TAGVR 60

Query: 148 RGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
            G+ V+ TG+ ++V +G   L  I + I  P++   + KT  ++     APA
Sbjct: 61  PGEPVVGTGASLSVELGPRLLTSIYDGIQRPLEVIRE-KTGDFIARGVTAPA 111

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* Length = 464

 Score =  185 bits (472), Expect = 5e-55
 Identities = 57/270 (21%), Positives = 102/270 (37%), Gaps = 28/270 (10%)

Query: 88  GQVCQVIGAVVDVRFDEGLPPI--LTALEVVDHSVRL--VLEVAQHMGEGVVRTIAMDGT 143
             +  + G ++ V   +       +  ++     VR   V+EV+    E        + T
Sbjct: 9   TGITYISGPLLFVENAKD-LAYGAIVDIKDGTGRVRGGQVIEVS----EEYAVIQVFEET 63

Query: 144 EGLVRGQ-RVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVE 202
            GL      V        + V +  LGR  N IG+PID    +  E  LPI       V 
Sbjct: 64  TGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVA 123

Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA----------K 252
           +   +Q + TGI  +D++    RG K+ +F G+G+    +  ++               K
Sbjct: 124 RRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEK 183

Query: 253 AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVG 312
                 VFA +G   RE +   +E   +G +         +  L   + ++P   R    
Sbjct: 184 EEPFAVVFAAMGITQRELSYFIQEFERTGALS--------RSVLFLNKADDPTIERILTP 235

Query: 313 LTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
              LTVAE+        VL+ + ++  +++
Sbjct: 236 RMALTVAEYLAFEHDYHVLVILTDMTNYSE 265

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Length = 469

 Score =  140 bits (354), Expect = 7e-38
 Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 28/264 (10%)

Query: 88  GQVCQVIGAVVDVRFDEGLPPI----LTALEVVDHSVRL--VLEVAQHMGEGVVRTIAM- 140
             + Q+ G ++ V   E   P+    +  +++ D +VR   VL+ +          +   
Sbjct: 15  KTITQIAGPLIFV---EKTEPVGYNEIVNIKMGDGTVRRGQVLDSSAD------IVVVQV 65

Query: 141 -DGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPA 199
            +GT GL +   V+ TG  + +P     LGRI++  GEP D    +  +  L I+  A  
Sbjct: 66  FEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMN 125

Query: 200 FVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS- 258
              +   +  + TGI  +D      RG K+ +F  +G+    + +++    +      + 
Sbjct: 126 PYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAF 185

Query: 259 --VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316
             VFA +G    E      +  ++G ++        +  +     ++P   R       L
Sbjct: 186 AVVFAAMGITNEEAQYFMSDFEKTGALE--------RAVVFLNLADDPAVERIVTPRMAL 237

Query: 317 TVAEHFRDAEGQDVLLFIDNIFRF 340
           T AE+     G  VL+ + +I  +
Sbjct: 238 TAAEYLAYEHGMHVLVILTDITNY 261

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Length = 438

 Score =  130 bits (330), Expect = 1e-34
 Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 17/247 (6%)

Query: 94  IGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVL 153
           +GA   +   +G        EVV  + + +  +     EG++      G     R     
Sbjct: 30  LGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILP-----GARVYARNGHGD 84

Query: 154 NTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTG 213
              S   +P+G   LGR+++  G+P+D      T     +       +++   + +L TG
Sbjct: 85  GLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTG 144

Query: 214 IKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDL 273
           ++ ++ L    RG ++GLF G+GVGK+VL+  +            V   +GER RE    
Sbjct: 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY---TRADVIVVGLIGERGRE---- 197

Query: 274 YREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLF 333
            ++ IE+    LG     ++  ++    +  P  R +       +AE FRD  GQ VLL 
Sbjct: 198 VKDFIEN---ILGP-DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-RGQHVLLI 252

Query: 334 IDNIFRF 340
           +D++ R+
Sbjct: 253 MDSLTRY 259

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Length = 347

 Score =  127 bits (321), Expect = 5e-34
 Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 14/184 (7%)

Query: 158 PITVPVGRVTLGRIMNVIGEPIDEKGDL-KTEHYLPIHREAPAFVEQATEQQILVTGIKV 216
              + VG   LGR+++ IG P++             ++ E P  + +    Q  + G++ 
Sbjct: 2   SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRA 61

Query: 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE 276
           +D L     G +IG+F G+GVGK+ L+  + N    A     V A +GER RE      E
Sbjct: 62  IDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG---ASADIIVLALIGERGRE----VNE 114

Query: 277 MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN 336
            +      L      SKC LV    + P   R +   T  T+AE+FRD +G++VLL +D+
Sbjct: 115 FLA----LLPQ-STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD-QGKNVLLMMDS 168

Query: 337 IFRF 340
           + R+
Sbjct: 169 VTRY 172

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Length = 515

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 14/249 (5%)

Query: 87  IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGL 146
            G+V QV   +       GL  ++   E+V+     V  VA ++ E  V  I +   + +
Sbjct: 40  TGKVIQVGDGIARA---YGLNKVM-VSELVEFVETGVKGVAFNLEEDNVGIIILGEYKDI 95

Query: 147 VRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATE 206
             G  V      I VPVG   LGR++N +GEP+D KG +  +++ PI  +AP  + +   
Sbjct: 96  KEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPV 155

Query: 207 QQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266
              L TGIK +D + P  RG +  + G    GKT + ++ I N  K  G + ++  +G++
Sbjct: 156 DTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIIN-QKGQGVYCIYVAIGQK 214

Query: 267 TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326
                   +  I   + KL    A     +V    ++P   +      G  + E+F    
Sbjct: 215 --------KSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAY-S 265

Query: 327 GQDVLLFID 335
           G+D L+  D
Sbjct: 266 GRDALVVYD 274

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Length = 502

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 10/210 (4%)

Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
           +AQ++ E  V  + +     +  G +V  TG  + VPVG   LGR++N +G+P+D +G +
Sbjct: 62  MAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPI 121

Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
           +T  Y PI   AP  +++ +  + L TGIK +D + P  RG +  + G    GKT + ++
Sbjct: 122 ETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAID 181

Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
            I N  K      ++  +G++        +  +   V  L    A     +V    +EP 
Sbjct: 182 TIIN-QKGQDVICIYVAIGQK--------QSTVAGVVETLRQHDALDYTIVVTASASEPA 232

Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFID 335
                    G  + E+F   +G+  L+  D
Sbjct: 233 PLLYLAPYAGCAMGEYFMY-KGKHALVVYD 261

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* Length = 507

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 10/210 (4%)

Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
           +A ++    V  + M     +  G  V  TG    +PV    LGR++N + +PID +G++
Sbjct: 63  IALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEI 122

Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
                  I   AP  + + +  + L TG+  +D + P  RG +  + G    GKT +  +
Sbjct: 123 TASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATD 182

Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
            I N  +      V+  +G++           +   V    ++ A     +V    + P 
Sbjct: 183 TILN-QQGQNVICVYVAIGQK--------ASSVAQVVTNFQERGAMEYTIVVAETADSPA 233

Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFID 335
             +     TG  +AE+F     +  L+  D
Sbjct: 234 TLQYLAPYTGAALAEYFMY-RERHTLIIYD 262

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... Length = 510

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 20/219 (9%)

Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
           ++ ++    V  +     + +  G  V  TG+ + VPVG   LGR+++ +G  ID KG +
Sbjct: 62  MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 121

Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
            ++    +  +AP  + + + ++ + TGIK VD L P  RG +  + G    GKT + ++
Sbjct: 122 GSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 181

Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLY---------REMIESGVIKLGDKQADSKCAL 296
            I N  + + G          T E   LY         R  +   V +L D  A     +
Sbjct: 182 TIINQKRFNDG----------TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231

Query: 297 VYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFID 335
           V    ++    +     +G ++ E+FRD  G+  L+  D
Sbjct: 232 VSATASDAAPLQYLAPYSGCSMGEYFRD-NGKHALIIYD 269

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A Length = 513

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 10/210 (4%)

Query: 126 VAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDL 185
           +A ++    V  + M     L  G +V  TG  + VPVGR  LGR++N +G PID KG L
Sbjct: 62  IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121

Query: 186 KTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245
             + +  +   AP  +E+ +  Q + TG K VD + P  RG +  + G    GKT L ++
Sbjct: 122 DHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAID 181

Query: 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPP 305
            I N  +  G   ++  +G++           I + V KL +  A +   +V    +E  
Sbjct: 182 AIIN-QRDSGIKCIYVAIGQK--------ASTISNVVRKLEEHGALANTIVVVATASESA 232

Query: 306 GARARVGLTGLTVAEHFRDAEGQDVLLFID 335
             +      G  + E+FRD  G+D L+  D
Sbjct: 233 ALQYLAPYAGCAMGEYFRD-RGEDALIIYD 261

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 6e-12
 Identities = 35/256 (13%), Positives = 81/256 (31%), Gaps = 53/256 (20%)

Query: 99  DVRFDEGLP-PILTALEVVDH---------SVRLVLEVAQHMGEGVVRTIAMDGTEGLVR 148
           D +  + +P  IL+  E +DH             +        E +V             
Sbjct: 34  DCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV------------- 79

Query: 149 GQRVLNTGSPITVPVGRVTLGRIMNVI-GEPIDEKGDLKTEHYL----PIHREAPAFVEQ 203
            Q+ +         V R+    +M+ I  E         T  Y+     ++ +   F + 
Sbjct: 80  -QKFVEE-------VLRINYKFLMSPIKTEQRQPSMM--TRMYIEQRDRLYNDNQVFAKY 129

Query: 204 ATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGFSVF-A 261
              +      ++    L   +    + + G  G GKT + +++  +   +    F +F  
Sbjct: 130 NVSRLQPYLKLR--QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 262 GVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321
            +         L  EM++  + ++ D    S+        +     + R+      +   
Sbjct: 188 NLKNCNSPETVL--EMLQKLLYQI-DPNWTSRS-------DHSSNIKLRIHSIQAELRRL 237

Query: 322 FRDAEGQDVLLFIDNI 337
            +    ++ LL + N+
Sbjct: 238 LKSKPYENCLLVLLNV 253

>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1 Length = 54

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 28/54 (51%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 1  MASRRLLSSLLRSSVRR--SPSKSSLSNSSVFSPA-ATRRASPYGHLLSRVSEY 51
          MASRRLL+SLLR S +R       SL NS   S + A+ RASP G LL+R  +Y
Sbjct: 1  MASRRLLASLLRQSAQRGGGLISRSLGNSIPKSASRASSRASPKGFLLNRAVQY 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	100.0
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	100.0
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	100.0
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	100.0
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	100.0
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	100.0
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	100.0
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	100.0
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	100.0
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	100.0
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	100.0
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	100.0
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	100.0
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	100.0
3l0o_A	427	Transcription termination factor RHO; helicase, RH	100.0
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	100.0
3ice_A	422	Transcription termination factor RHO; transcriptio	100.0
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	100.0
3io5_A	333	Recombination and repair protein; storage dimer, i	97.83
1pyv_A	54	ATP synthase beta chain, mitochondrial precursor;	97.8
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.77
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.73
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.64
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.6
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.59
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.58
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.58
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.56
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.54
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.45
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.4
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.39
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.38
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.34
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.31
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.21
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.99
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.86
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.72
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	96.69
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.65
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.59
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.56
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.47
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.42
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.39
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.22
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.21
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.21
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.08
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.97
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	95.9
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.86
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.85
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.85
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.74
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.73
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.72
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.69
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.66
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	95.65
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.61
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.52
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.48
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.34
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.32
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.31
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.27
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.18
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.18
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.14
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.13
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.11
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.08
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.04
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.04
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.03
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.03
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.01
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.96
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	94.94
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.94
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.93
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.9
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.9
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.9
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.89
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	94.89
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.89
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.87
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.87
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.85
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.85
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.85
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.85
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.83
1g6h_A	257	High-affinity branched-chain amino acid transport	94.82
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.82
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.76
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.76
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.75
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.74
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.7
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.7
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.7
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.65
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.6
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.58
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.56
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	94.53
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.53
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	94.5
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.5
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.49
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.46
3pvs_A	447	Replication-associated recombination protein A; ma	94.44
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.43
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.41
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.4
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	94.37
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.34
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.29
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	94.27
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.25
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.24
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.22
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.22
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.2
3bos_A	242	Putative DNA replication factor; P-loop containing	94.19
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.09
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.03
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.01
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	94.0
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	93.93
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	93.93
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.89
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	93.89
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	93.88
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.87
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	93.85
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	93.84
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.83
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.83
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	93.74
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	93.69
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	93.68
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	93.67
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	93.67
2og2_A	359	Putative signal recognition particle receptor; nuc	93.62
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	93.59
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	93.52
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	93.51
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	93.48
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	93.42
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	93.38
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	93.35
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.33
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	93.32
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	93.32
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.28
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	93.27
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	93.26
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	93.25
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	93.24
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.22
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	93.16
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.05
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.81
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	92.8
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	92.74
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	92.72
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	92.69
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	92.65
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	92.65
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	92.63
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	92.63
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	92.61
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	92.6
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	92.6
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	92.57
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	92.56
2ewv_A	372	Twitching motility protein PILT; pilus retraction	92.55
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	92.55
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	92.48
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	92.42
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	92.4
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	92.35
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	92.32
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	92.32
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	92.31
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	92.23
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	92.22
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.2
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	92.16
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	92.07
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.04
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	91.99
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	91.97
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	91.97
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	91.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	91.92
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	91.91
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.9
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	91.86
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.86
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	91.84
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	91.79
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.77
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	91.73
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	91.73
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	91.64
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	91.64
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	91.64
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	91.6
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	91.59
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	91.56
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	91.54
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	91.53
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	91.48
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	91.47
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	91.45
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	91.45
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	91.45
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	91.44
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	91.43
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	91.43
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	91.4
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	91.36
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	91.36
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	91.35
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	91.35
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.34
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	91.34
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	91.33
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	91.22
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	91.22
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	91.22
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	91.22
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	91.21
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	91.13
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	91.13
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.13
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	91.11
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	91.11
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	91.1
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	91.07
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.07
3kta_A	182	Chromosome segregation protein SMC; structural mai	91.04
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	91.01
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	90.97
2xxa_A	433	Signal recognition particle protein; protein trans	90.96
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	90.93
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	90.91
1p9r_A	418	General secretion pathway protein E; bacterial typ	90.91
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	90.86
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	90.82
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	90.82
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	90.82
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	90.78
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	90.78
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	90.77
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	90.76
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	90.75
2qgz_A	308	Helicase loader, putative primosome component; str	90.71
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	90.71
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	90.7
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	90.68
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	90.66
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	90.65
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	90.64
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	90.6
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	90.58
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	90.56
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	90.55
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	90.54
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	90.51
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	90.51
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	90.49
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	90.48
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	90.46
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	90.46
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	90.45
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	90.44
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	90.43
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	90.4
2vli_A	183	Antibiotic resistance protein; transferase, tunica	90.39
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	90.37
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	90.35
2ged_A	193	SR-beta, signal recognition particle receptor beta	90.34
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	90.32
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	90.31
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	90.31
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	90.3
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	90.24
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	90.23
1via_A	175	Shikimate kinase; structural genomics, transferase	90.21
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	90.2
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	90.19
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	90.19
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	90.18
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	90.15
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	90.13
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	90.13
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	90.08
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	90.07
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	90.04
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	90.04
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	89.97
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	89.96
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	89.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	89.91
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	89.91
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	89.9
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	89.89
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	89.86
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	89.86
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	89.83
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	89.81
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	89.77
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	89.76
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	89.75
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	89.69
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	89.69
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	89.66
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	89.66
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	89.65
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	89.64
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	89.61
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	89.59
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	89.57
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	89.56
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	89.54
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	89.52
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	89.39
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	89.37
2hf9_A	226	Probable hydrogenase nickel incorporation protein	89.27
2fh5_B	214	SR-beta, signal recognition particle receptor beta	89.27
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	89.23
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	89.17
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	89.17
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	89.17
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	89.13
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	89.11
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	89.09
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	89.08
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	89.06
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	89.03
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	89.03
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	89.03
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	89.02
1nrj_B	218	SR-beta, signal recognition particle receptor beta	89.01
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	88.99
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	88.91
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	88.88
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	88.86
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	88.82
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	88.82
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	88.76
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	88.71
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	88.71
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	88.65
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	88.6
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	88.5
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	88.47
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	88.46
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	88.46
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	88.44
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	88.43
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	88.4
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	88.39
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	88.39
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	88.36
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	88.34
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	88.33
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	88.33
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	88.32
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	88.29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	88.27
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	88.27
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	88.26
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	88.23
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	88.2
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	88.19
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	88.18
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	88.15
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	88.14
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	88.14
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	88.14
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	88.12
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	88.05
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	88.05
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	88.01
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	87.96
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	87.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	87.93
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	87.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	87.91
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	87.89
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	87.84
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	87.74
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	87.7
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	87.7
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	87.66
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	87.65
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	87.54
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	87.52
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	87.45
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	87.42
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	87.4
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	87.4
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	87.4
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	87.38
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	87.35
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	87.24
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	87.22
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	87.18
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	87.12
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	87.1
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	86.96
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	86.92
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	86.92
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	86.82
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	86.81
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	86.81
2fna_A	357	Conserved hypothetical protein; structural genomic	86.79
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	86.75
2r44_A	331	Uncharacterized protein; putative ATPase, structur	86.74
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	86.67
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	86.55
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	86.49
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	86.44
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	86.42
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	86.4
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	86.32
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	86.28
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	86.23
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	86.12
1tue_A	212	Replication protein E1; helicase, replication, E1E	86.11
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	86.07
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	85.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	85.89
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	85.83
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	85.79
3llu_A	196	RAS-related GTP-binding protein C; structural geno	85.77
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	85.74
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	85.72
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	85.55
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	85.33
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	85.29
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	85.28
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	85.1
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	85.06
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	84.96
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	84.78
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	84.69
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	84.41
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	84.4
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	84.35
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	84.14
3co5_A	143	Putative two-component system transcriptional RES	84.09
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	84.08
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	84.04
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	84.39
3lfu_A	647	DNA helicase II; SF1 helicase, ATP-binding, DNA da	83.9
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	83.88
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	83.73
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	83.69
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	83.57
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	83.56
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	83.51
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	83.35
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	83.26
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	83.21
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	83.15
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	83.02
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	82.97
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	82.94
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	82.83
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	82.81
2chq_A	319	Replication factor C small subunit; DNA-binding pr	82.74
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	82.52
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	82.5
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	82.49
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	82.48
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	82.4
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	82.31
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	82.31
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	82.3
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	82.13
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	82.09
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	82.06
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	81.57
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	81.46
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	81.2
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	81.02
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	80.79
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	80.79
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	80.71
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	80.69

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=100.00  E-value=2.2e-70  Score=554.97  Aligned_cols=264  Identities=78%  Similarity=1.183  Sum_probs=242.8

Q ss_pred             ccCCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCcee
Q 018957           82 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV  161 (348)
Q Consensus        82 ~~~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~V  161 (348)
                      +...++|+|++|.|++|+++|+..+|.+++.+++...+.++++||++|++++.+++++|++++||++|++|.+||++++|
T Consensus         9 ~~~~~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~v   88 (482)
T 2ck3_D            9 KAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRI   88 (482)
T ss_dssp             ----CEEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEE
T ss_pred             ccCCcceEEEEEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCccee
Confidence            44556899999999999999975588898777764323468999999999999999999999999999999999999999


Q ss_pred             cCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957          162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV  241 (348)
Q Consensus       162 pVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~  241 (348)
                      |||++|||||+|++|+|||+++++...++||+++++|++.+|.++++||+||||+||+|+||+||||++|||++|+|||+
T Consensus        89 pvG~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~  168 (482)
T 2ck3_D           89 PVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV  168 (482)
T ss_dssp             ECSGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHH
T ss_pred             eccccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHH
Confidence            99999999999999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957          242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH  321 (348)
Q Consensus       242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy  321 (348)
                      |++++|+|++++|+++|||++||||+||++||+++|.+.++++..  ..++||++|++|+|+||.+|++++|+|+|+|||
T Consensus       169 L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~--~~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEy  246 (482)
T 2ck3_D          169 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLK--DATSKVALVYGQMNEPPGARARVALTGLTVAEY  246 (482)
T ss_dssp             HHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSS--SSCCCEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccc--cCCceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999888889999999999999999999999999876421  134699999999999999999999999999999


Q ss_pred             hhhcCCCcEEEEEechhHHHhhhccc
Q 018957          322 FRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       322 frd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||++|||||||+|||||||+|+||+
T Consensus       247 frd~~G~dVLll~DsitR~A~A~rEi  272 (482)
T 2ck3_D          247 FRDQEGQDVLLFIDNIFRFTQAGSEV  272 (482)
T ss_dssp             HHHTTCSCEEEEEECTHHHHHHHHHH
T ss_pred             HHHhcCCcEEEEeccHHHHHHHHHHh
Confidence            99977999999999999999999986

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=100.00  E-value=1.3e-70  Score=558.37  Aligned_cols=260  Identities=62%  Similarity=0.975  Sum_probs=241.4

Q ss_pred             ceeeEEEEECCEEEEEeCC-CChhhhhceEEee-c--Cc--eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCc
Q 018957           86 AIGQVCQVIGAVVDVRFDE-GLPPILTALEVVD-H--SV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI  159 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~-glp~i~~~lev~~-~--~~--~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l  159 (348)
                      ++|+|++|+|++|+++|.+ .+|.+++.+++.. .  ..  ++++||++|++++.+++++|++++||++|++|.+||+++
T Consensus        19 ~~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~   98 (498)
T 1fx0_B           19 NLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPL   98 (498)
T ss_dssp             CCEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSC
T ss_pred             CCceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcc
Confidence            4699999999999999875 4788888787743 1  12  579999999999999999999999999999999999999


Q ss_pred             eecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcH
Q 018957          160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK  239 (348)
Q Consensus       160 ~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGK  239 (348)
                      +||||++|||||+|++|+|||+++++...++|||+++||+|++|.++++||+||||+||+|+||+||||+||||++|+||
T Consensus        99 ~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGK  178 (498)
T 1fx0_B           99 SVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGK  178 (498)
T ss_dssp             EEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSH
T ss_pred             eEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCc
Confidence            99999999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCC-CeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957          240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD-SKCALVYGQMNEPPGARARVGLTGLTV  318 (348)
Q Consensus       240 T~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~-~rtvvV~~tsdep~~~r~~a~~~a~ti  318 (348)
                      |+|++++|+|++++|+++|||++||||+||++||+++|.+.++++.  +..+ +||+||++|+|+||.+|++++|+|+|+
T Consensus       179 T~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~--~~l~~~rtvvV~~t~d~p~~~R~~~~~~alti  256 (498)
T 1fx0_B          179 TVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINE--QNIAESKVALVYGQMNEPPGARMRVGLTALTM  256 (498)
T ss_dssp             HHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCS--STTCCCCEEEEEECTTSCHHHHTTHHHHHHHT
T ss_pred             hHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhccccccc--ccccccceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            9999999999988888999999999999999999999999987631  1111 399999999999999999999999999


Q ss_pred             HHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          319 AEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       319 AEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||||||++|||||||+|||||||+|+|||
T Consensus       257 AEyfrd~~G~dVLl~~DsitR~A~A~rEv  285 (498)
T 1fx0_B          257 AEYFRDVNEQDVLLFIDNIFRFVQAGSEV  285 (498)
T ss_dssp             HHHHTTTSCCEEEEEEECSHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEeccHHHHHHHHHHH
Confidence            99999977999999999999999999986

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=100.00  E-value=5.5e-67  Score=531.74  Aligned_cols=249  Identities=26%  Similarity=0.426  Sum_probs=226.3

Q ss_pred             CCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957           84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV  163 (348)
Q Consensus        84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV  163 (348)
                      ...+|+|++|.|+++.++   |++++. ..|++.+..+.. +.+.+++++.+++++|+++.||++|++|++||++++|||
T Consensus        25 ~~~~G~V~~v~g~i~~v~---Gl~~~~-~gElv~~~~~~~-g~v~~l~~d~v~~~~~~~~~gi~~G~~V~~tg~~~~Vpv   99 (513)
T 3oaa_A           25 AHNEGTIVSVSDGVIRIH---GLADCM-QGEMISLPGNRY-AIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPV   99 (513)
T ss_dssp             CTTEEEEEEEETTEEEEE---ECTTCB-TTCEEEETTTEE-EEEEEECSSCEEEEESSCCSSCCTTCEEECCSCSSEEEC
T ss_pred             ceeEEEEEEEECcEEEEE---CCccCC-cCCEEEECCCCE-EEEEEeeCCEEEEEEeCCccCCCCCCEEEEcCCCCeEee
Confidence            445899999999999997   887554 234433333444 455567888999999999999999999999999999999


Q ss_pred             CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957          164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI  243 (348)
Q Consensus       164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~  243 (348)
                      |++|||||+|++|+|||+++++....++||+++||++++|.++++||+||||+||+|+|||||||++|||++|+|||+|+
T Consensus       100 G~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~  179 (513)
T 3oaa_A          100 GRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALA  179 (513)
T ss_dssp             SGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHH
T ss_pred             CHHHhccchhhcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecCCCCCcchHH
Confidence            99999999999999999999998889999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957          244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR  323 (348)
Q Consensus       244 ~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr  323 (348)
                      +++|.|++ .++.+|||++||||+||+++|+++|.+.|+        ++||+||++|+|+||.+|+++||+|+|+|||||
T Consensus       180 l~~I~n~~-~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~--------m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfr  250 (513)
T 3oaa_A          180 IDAIINQR-DSGIKCIYVAIGQKASTISNVVRKLEEHGA--------LANTIVVVATASESAALQYLAPYAGCAMGEYFR  250 (513)
T ss_dssp             HHHHHTTS-SSSCEEEEEEESCCHHHHHHHHHHHHHHSC--------STTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhc-cCCceEEEEEecCChHHHHHHHHHHhhcCc--------ccceEEEEECCCCChHHHHHHHHHHHHHHHHHH
Confidence            88888873 334579999999999999999999999985        469999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEechhHHHhhhccc
Q 018957          324 DAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       324 d~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      | +|+|||++||||||||+|++|+
T Consensus       251 d-~G~dVLli~Dsltr~A~A~REi  273 (513)
T 3oaa_A          251 D-RGEDALIIYDDLSKQAVAYRQI  273 (513)
T ss_dssp             H-TTCEEEEEEETHHHHHHHHHHH
T ss_pred             h-cCCCEEEEecChHHHHHHHHHH
Confidence            9 8999999999999999999986

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=100.00  E-value=1.6e-66  Score=529.68  Aligned_cols=248  Identities=23%  Similarity=0.395  Sum_probs=226.7

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR  165 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~  165 (348)
                      .+|+|++|.|++++++   |+|++. ..|++....+. .+++.+++++.+++++|+++.||++|+.|++||++++||||+
T Consensus        27 ~~G~V~~v~g~iv~v~---gl~~~~-~ge~~~i~~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~  101 (510)
T 2ck3_A           27 ETGRVLSIGDGIARVH---GLRNVQ-AEEMVEFSSGL-KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGE  101 (510)
T ss_dssp             SEEEEEEEETTEEEEE---ECTTCB-TTCEEEETTSC-EEEEEEECSSCEEEEESSCGGGCCTTCEEEECCCCCEEEESG
T ss_pred             EEeEEEEEECcEEEEe---eCCCCC-CCCEEEECCCC-eEEEEeccCCeEEEEEECCcccccCCCEEEEeCCcceeecCc
Confidence            5899999999999997   887665 12232222233 477778899999999999999999999999999999999999


Q ss_pred             cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957          166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME  245 (348)
Q Consensus       166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~  245 (348)
                      +|||||+|++|+|||+++++...++|||+++||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++
T Consensus       102 ~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~  181 (510)
T 2ck3_A          102 ELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID  181 (510)
T ss_dssp             GGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHH
T ss_pred             cceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEecCCCCCchHHHHH
Confidence            99999999999999999999888899999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhh-------cCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957          246 LINNVAKA-------HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV  318 (348)
Q Consensus       246 ii~n~a~~-------~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ti  318 (348)
                      +|.|+++.       ++.+|||++||||+||+++|+++|++.+++        +||+||++|+|+||.+|+++||+|+|+
T Consensus       182 ~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m--------~~tvvV~atad~p~~~r~~a~~~a~ti  253 (510)
T 2ck3_A          182 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM--------KYTIVVSATASDAAPLQYLAPYSGCSM  253 (510)
T ss_dssp             HHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG--------GGEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc--------ccceEEEECCCCCHHHHHHHHHHHHHH
Confidence            88888763       334799999999999999999999998854        699999999999999999999999999


Q ss_pred             HHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          319 AEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       319 AEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||||| +|+|||++||||||||+|+||+
T Consensus       254 AEyfrd-~G~dVLli~Dsltr~A~A~REi  281 (510)
T 2ck3_A          254 GEYFRD-NGKHALIIYDDLSKQAVAYRQM  281 (510)
T ss_dssp             HHHHHT-TTCEEEEEEETHHHHHHHHHHH
T ss_pred             HHHHHH-cCCcEEEEEcCHHHHHHHHHHH
Confidence            999999 7999999999999999999986

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=100.00  E-value=1.8e-66  Score=528.47  Aligned_cols=246  Identities=25%  Similarity=0.427  Sum_probs=226.3

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR  165 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~  165 (348)
                      .+|+|++|.|++++++   |+|++. ..|++....+. .+++.+++++.+++++|+++.||++|+.|++||++++||||+
T Consensus        27 ~~G~V~~v~g~iv~v~---gl~~~~-~ge~~~i~~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~  101 (502)
T 2qe7_A           27 EVGTVIQVGDGIARVH---GLEKVM-AGELLEFENGV-MGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGE  101 (502)
T ss_dssp             CEEEEEEEETTEEEEE---CCTTCB-TTEEEEETTSC-EEEEEEEETTEEEEEECSCCSSCCTTCEEEEEEEESEEECSG
T ss_pred             EEEEEEEecCcEEEEE---ECCCCC-CCCEEEECCCC-EEEEEEecCCeEEEEEecCccCCcCCCEEEEeCCcceEEccc
Confidence            5899999999999997   887665 22333332233 477778899999999999999999999999999999999999


Q ss_pred             cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957          166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME  245 (348)
Q Consensus       166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~  245 (348)
                      +|||||+|++|+|||+++++...++|||+++||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++
T Consensus       102 ~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~  181 (502)
T 2qe7_A          102 ALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAID  181 (502)
T ss_dssp             GGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHH
T ss_pred             ccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEECCCCCCchHHHHH
Confidence            99999999999999999999888899999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957          246 LINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       246 ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd  324 (348)
                      +|.|++.  .| +|||++||||+||+++|+++|.+.++        ++||+||++|+|+||.+|+++||+|+|+||||||
T Consensus       182 ~I~~~~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~--------m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd  251 (502)
T 2qe7_A          182 TIINQKG--QDVICIYVAIGQKQSTVAGVVETLRQHDA--------LDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMY  251 (502)
T ss_dssp             HHHGGGS--CSEEEEEEEESCCHHHHHHHHHHHHHTTC--------STTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhc--CCcEEEEEECCCcchHHHHHHHHHhhCCC--------cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8888753  45 78999999999999999999999885        4699999999999999999999999999999999


Q ss_pred             cCCCcEEEEEechhHHHhhhccc
Q 018957          325 AEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       325 ~~G~dVLli~DslTR~A~A~~e~  347 (348)
                       +|||||++||||||||+|+||+
T Consensus       252 -~G~dVLl~~Dsltr~A~A~REi  273 (502)
T 2qe7_A          252 -KGKHALVVYDDLSKQAAAYREL  273 (502)
T ss_dssp             -TTCEEEEEEECHHHHHHHHHHH
T ss_pred             -cCCcEEEEEecHHHHHHHHHHH
Confidence             7999999999999999999986

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=100.00  E-value=6.8e-66  Score=524.81  Aligned_cols=246  Identities=25%  Similarity=0.433  Sum_probs=225.7

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEeec-CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      .+|+|++|.|++++++   |+|.+. ..|++.. ..+. .+++.+++++.+++++|+++.||++|+.|++||++++||||
T Consensus        39 ~~G~V~~V~g~iv~v~---gl~~~~-~gEl~~i~~~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG  113 (515)
T 2r9v_A           39 DTGKVIQVGDGIARAY---GLNKVM-VSELVEFVETGV-KGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVG  113 (515)
T ss_dssp             TEEEEEEEETTEEEEE---ECTTCC-TTEEEEETTTCC-EEEEEECCTTCEEEEEESCCTTCCTTCEEEEEEEECEEEES
T ss_pred             eeeEEEEEECcEEEEe---cCCCCC-CCCEEEEecCCe-EEEEEEecCCeEEEEEecCcccccCCCEEEEeCCcceeecC
Confidence            5899999999999997   887665 2233333 2233 46677789999999999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957          165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      ++|||||+|++|+|||+++++...++|||+++||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|++
T Consensus       114 ~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal  193 (515)
T 2r9v_A          114 EELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAI  193 (515)
T ss_dssp             GGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHHH
T ss_pred             ccceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccCCCcchhcCccccccccccccCCEEEEEcCCCCCccHHHH
Confidence            99999999999999999999988889999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957          245 ELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR  323 (348)
Q Consensus       245 ~ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr  323 (348)
                      ++|.|++.  .| +|||++||||+||+++|+++|.+.+++        +||+||++|+|+||.+|+++||+|+|+|||||
T Consensus       194 ~~I~~~~~--~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m--------~rtvvV~atad~p~~~r~~a~~~a~tiAEyfr  263 (515)
T 2r9v_A          194 DTIINQKG--QGVYCIYVAIGQKKSAIARIIDKLRQYGAM--------EYTTVVVASASDPASLQYIAPYAGCAMGEYFA  263 (515)
T ss_dssp             HHHHTTTT--TTEEEEEEEESCCHHHHHHHHHHHHHTTGG--------GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhc--CCcEEEEEEcCCCcHHHHHHHHHHHhCCCc--------ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88888753  45 689999999999999999999998854        69999999999999999999999999999999


Q ss_pred             hcCCCcEEEEEechhHHHhhhccc
Q 018957          324 DAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       324 d~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      | +|||||++||||||||+|+||+
T Consensus       264 d-~G~dVLli~DslTr~A~A~REi  286 (515)
T 2r9v_A          264 Y-SGRDALVVYDDLSKHAVAYRQL  286 (515)
T ss_dssp             T-TTCEEEEEEETHHHHHHHHHHH
T ss_pred             H-cCCcEEEEeccHHHHHHHHHHH
Confidence            9 7999999999999999999986

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=100.00  E-value=1.9e-65  Score=516.58  Aligned_cols=250  Identities=22%  Similarity=0.346  Sum_probs=224.4

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhh-hceEEee--cCceeEEEEeeeccCceEEEEeecCCCCCC-CCCEEEecCCCce
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT  160 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~-~~lev~~--~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~-~G~~V~~tg~~l~  160 (348)
                      ..+|+|++|.|++++++   |++.+. +++..+.  ++.....||+.+ +++.+.+++|+++.||+ .|++|.+||++++
T Consensus        10 ~~~g~v~~v~g~~v~v~---gl~~~~~ge~v~i~~~~g~~~~geVv~~-~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~   85 (465)
T 3vr4_D           10 KEYRTIKEVVGPLMAVE---KVSGVKYEELIEVRMQNGEIRRGQVLEV-QEDKAMVQIFEGTSGINLKNSSVRFLGHPLQ   85 (465)
T ss_dssp             -CBCCEEEEETTEEEEE---SCCSCCTTCEEEEECTTSCEEEEEEEEE-ESSEEEEEETTCCTTCCTTTCEEEECSSCCE
T ss_pred             ceEEEEEEEECCEEEEe---cCCCCCcCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEecCccccccCCCEEEECCCcce
Confidence            35899999999999997   765433 3433332  223567888866 66678899999999999 9999999999999


Q ss_pred             ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957          161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (348)
Q Consensus       161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT  240 (348)
                      ||||++|||||+|++|+|||+++++..+.++||++.||+|++|.++++||+||||+||+|+||+||||++|||++|+|||
T Consensus        86 vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt  165 (465)
T 3vr4_D           86 LGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHK  165 (465)
T ss_dssp             EEECGGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHH
T ss_pred             eecchhhccceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChH
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCC----EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957          241 VLIMELINNVAKAHGG----FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL  316 (348)
Q Consensus       241 ~L~~~ii~n~a~~~~~----~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~  316 (348)
                      +|+++|++ ++++|++    +|||++||||+||+++|+++|.+.+++        +||++|++|+|+||.+|+++||+|+
T Consensus       166 ~L~~~Ia~-~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~--------~rtvvV~atsd~p~~~r~~a~~~a~  236 (465)
T 3vr4_D          166 ELAAQIAR-QATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAI--------DRSVMFMNLANDPAIERIATPRMAL  236 (465)
T ss_dssp             HHHHHHHH-HCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGG--------GGEEEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCc--------cceEEEEECCCCCHHHHHHHHHHHH
Confidence            99987665 5555445    899999999999999999999999854        6999999999999999999999999


Q ss_pred             HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |+||||||++|+||||+|||+||||+|+||+
T Consensus       237 tiAEyfrd~~G~~VLl~~DslTr~A~A~REi  267 (465)
T 3vr4_D          237 TAAEYLAYEKGMHVLVIMTDMTNYAEALREI  267 (465)
T ss_dssp             HHHHHHHHTTCCEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEEEcChHHHHHHHHHH
Confidence            9999999956999999999999999999986

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=100.00  E-value=3e-66  Score=527.42  Aligned_cols=246  Identities=22%  Similarity=0.350  Sum_probs=225.3

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhh-hceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~-~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      .+|+|++|.|++++++   |+|.+. +++.  ....+. .+++.+++++.+++++|+++.||++|+.|++||++++||||
T Consensus        28 ~~G~V~~v~g~iv~v~---gl~~~~~ge~~--~i~~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG  101 (507)
T 1fx0_A           28 NTGTVLQVGDGIARIH---GLDEVMAGELV--EFEEGT-IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVS  101 (507)
T ss_dssp             TEEEECCCCSSEEEEE---ECTTCCTTCCE--EETTCC-EEEEEEECSSEEEEEECSCGGGCCTTCEEECCCCCCEEEES
T ss_pred             EEEEEEEEeCCEEEEE---ECCCccCCCEE--EECCCc-eEEEEeccCCeEEEEEecCccCCcCCCEEEEeCCcceeecC
Confidence            5899999999999997   886655 2222  222233 46777889999999999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957          165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM  244 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~  244 (348)
                      ++|||||+|++|+|||+++++...++|||+++||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|++
T Consensus       102 ~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal  181 (507)
T 1fx0_A          102 EAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVAT  181 (507)
T ss_dssp             SSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHHHHHH
T ss_pred             ccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEecCCCCCccHHHH
Confidence            99999999999999999999988889999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957          245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD  324 (348)
Q Consensus       245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd  324 (348)
                      ++|.|++. ++.+|||++||||+||+++|+++|.+.++        ++||+||++|+|+||.+|+++||+|+|+||||||
T Consensus       182 ~~I~~~~~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~--------m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd  252 (507)
T 1fx0_A          182 DTILNQQG-QNVICVYVAIGQKASSVAQVVTNFQERGA--------MEYTIVVAETADSPATLQYLAPYTGAALAEYFMY  252 (507)
T ss_dssp             HHHHTCCT-TTCEEEEEEESCCHHHHHHHHHHTGGGTG--------GGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhc-CCcEEEEEEcCCCchHHHHHHHHHHhcCc--------cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888753 33479999999999999999999998875        4699999999999999999999999999999999


Q ss_pred             cCCCcEEEEEechhHHHhhhccc
Q 018957          325 AEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       325 ~~G~dVLli~DslTR~A~A~~e~  347 (348)
                       +|||||++||||||||+|+||+
T Consensus       253 -~G~dVLli~Dsltr~A~A~REi  274 (507)
T 1fx0_A          253 -RERHTLIIYDDLSKQAQAYRQM  274 (507)
T ss_dssp             -TTCEEEEEEECHHHHHHHHHHH
T ss_pred             -cCCcEEEEEecHHHHHHHHHHH
Confidence             7999999999999999999986

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=100.00  E-value=1.2e-65  Score=519.73  Aligned_cols=253  Identities=20%  Similarity=0.291  Sum_probs=202.5

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEee-cCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV  163 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV  163 (348)
                      ..+|+|++|.|+++++++.. .+.+.+.+++.. .+.....||+.+ .++.+.+++|+++.||++|++|.+||++++|||
T Consensus        12 ~~~g~V~~V~g~vv~v~g~~-~~~~ge~v~i~~~~g~~~~geV~~~-~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpv   89 (469)
T 2c61_A           12 KEYKTITQIAGPLIFVEKTE-PVGYNEIVNIKMGDGTVRRGQVLDS-SADIVVVQVFEGTGGLDKDCGVIFTGETLKLPA   89 (469)
T ss_dssp             ----------CCEEEEECCS-CCCTTCEEEEECTTSCEEEEEEEEE-CSSEEEEEEC-------------CEEEBCEEEE
T ss_pred             ccccEEEEEECcEEEEeeCC-CCCcCCEEEEEeCCCCEEEEEEEEE-eCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEEc
Confidence            34799999999999998432 234443344421 222355777765 677889999999999999999999999999999


Q ss_pred             CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957          164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI  243 (348)
Q Consensus       164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~  243 (348)
                      |++|||||+|++|+|||+++++..+.++|+++.||+|++|.++++||+||||+||+|+||+||||++|||++|+|||+|+
T Consensus        90 g~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~Ll  169 (469)
T 2c61_A           90 SVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIA  169 (469)
T ss_dssp             CGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHH
T ss_pred             cccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHHHHH
Confidence            99999999999999999999988888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc---CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957          244 MELINNVAKAH---GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE  320 (348)
Q Consensus       244 ~~ii~n~a~~~---~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE  320 (348)
                      .+|+++...++   +++|||++||||+||++||+++|.+.+++        +||+||++|+|+||.+|++++|+|+|+||
T Consensus       170 ~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m--------~rtvvV~~tsd~p~~~r~~~~~~a~tiAE  241 (469)
T 2c61_A          170 LQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGAL--------ERAVVFLNLADDPAVERIVTPRMALTAAE  241 (469)
T ss_dssp             HHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGG--------GGEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCc--------cceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            98887643222   36999999999999999999999998854        69999999999999999999999999999


Q ss_pred             HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          321 HFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       321 yfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||||++|+|||||||||||||+|+||+
T Consensus       242 yfrdd~G~dVLl~~DsltR~A~A~rEi  268 (469)
T 2c61_A          242 YLAYEHGMHVLVILTDITNYAEALRQM  268 (469)
T ss_dssp             HHHHHHCCEEEEEEECHHHHHHHHTTS
T ss_pred             HHHHhcCCeEEEEEeCHHHHHHHHHHH
Confidence            999547999999999999999999997

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=100.00  E-value=4.7e-65  Score=513.59  Aligned_cols=250  Identities=22%  Similarity=0.300  Sum_probs=223.9

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhh-hce-EEee-cCceeEEEEeeeccCceEEEEeecCCCCCC-CCCEEEecCCCce
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TAL-EVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT  160 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~-~~l-ev~~-~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~-~G~~V~~tg~~l~  160 (348)
                      ..+|+|++|.|++++++   |++.+. +++ ++.. ++.....||+.+ +++.+.+++|+++.||+ .|+.|.+||++++
T Consensus         6 ~~~g~V~~v~g~~v~v~---gl~~~~~ge~v~i~~~~g~~~~geVv~~-~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~   81 (464)
T 3gqb_B            6 KEYTGITYISGPLLFVE---NAKDLAYGAIVDIKDGTGRVRGGQVIEV-SEEYAVIQVFEETTGLDLATTSVSLVEDVAR   81 (464)
T ss_dssp             CCBCCEEEEETTEEEEE---SCTTSCTTCEEEEECTTSCEEEEEEEEE-ESSEEEEEESSCCTTCCSSSCEEEEEESSCE
T ss_pred             ceeeEEEEEECCEEEEe---cCCCCCcCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEecCccccccCCCEEEECCCCcE
Confidence            35799999999999997   766443 333 3321 223467888865 66778899999999999 9999999999999


Q ss_pred             ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957          161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (348)
Q Consensus       161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT  240 (348)
                      ||||++|||||+|++|+|||+++++..+.++||++.||+|++|.++++||+||||+||+|+||+||||++|||++|+|||
T Consensus        82 vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt  161 (464)
T 3gqb_B           82 LGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPAN  161 (464)
T ss_dssp             EEECSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHH
T ss_pred             EEeChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCch
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcC-------C----EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHH
Q 018957          241 VLIMELINNVAKAHG-------G----FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA  309 (348)
Q Consensus       241 ~L~~~ii~n~a~~~~-------~----~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~  309 (348)
                      +|+.+|++ ++++|+       |    +|||++||||+||+++|+++|.+.|++        +||++|++|+|+||.+|+
T Consensus       162 ~L~~~Ia~-~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~--------~rtvvv~~t~d~p~~~r~  232 (464)
T 3gqb_B          162 EIAAQIAR-QATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGAL--------SRSVLFLNKADDPTIERI  232 (464)
T ss_dssp             HHHHHHHH-HCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGG--------GGEEEEEEETTSCTHHHH
T ss_pred             HHHHHHHH-HHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccc--------cceEEEEECCCCCHHHHH
Confidence            99987665 444421       3    899999999999999999999999854        699999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       310 ~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ++||+|+|+||||||++|+||||+|||+||||+|++|+
T Consensus       233 ~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REi  270 (464)
T 3gqb_B          233 LTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREI  270 (464)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHH
Confidence            99999999999999956999999999999999999986

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=100.00  E-value=1.1e-61  Score=491.61  Aligned_cols=254  Identities=68%  Similarity=1.070  Sum_probs=238.6

Q ss_pred             ceeeEEEEECCEEEEEeCCC-ChhhhhceEEee-c--Cc----eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVD-H--SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS  157 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~g-lp~i~~~lev~~-~--~~----~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~  157 (348)
                      .+|+|++|+|++|+++|+++ +|.+++.+++.. .  +.    ++++||+++++++.+++++|+++.||++|+.|.+||+
T Consensus         2 ~~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~   81 (473)
T 1sky_E            2 TRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGA   81 (473)
T ss_dssp             CEEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEE
T ss_pred             CceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCC
Confidence            36999999999999999854 888887777754 2  22    5899999999999999999999999999999999999


Q ss_pred             CceecCCccccccEEeeeCcccccCCCCccc-ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCC
Q 018957          158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG  236 (348)
Q Consensus       158 ~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~-~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~G  236 (348)
                      +++||||++|||||+|++|+|||+++++... ++||+++++|++++|.++++||+||||+||.|+|++||||++|||++|
T Consensus        82 ~~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sG  161 (473)
T 1sky_E           82 PISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAG  161 (473)
T ss_dssp             ECEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSS
T ss_pred             cceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCCC
Confidence            9999999999999999999999999998776 789999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957          237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL  316 (348)
Q Consensus       237 vGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~  316 (348)
                      +|||+|+.++++|+++.+.++|||++||||++|+.+++++|.+.+++        +||++|++++|+||++|++++++++
T Consensus       162 vGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l--------~~tvvv~~~~~d~pg~r~~~~~~~l  233 (473)
T 1sky_E          162 VGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVI--------SKTAMVFGQMNEPPGARMRVALTGL  233 (473)
T ss_dssp             SCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGG--------GGEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCc--------ceeEEEEEcCCCCHHHHHHHHHHHH
Confidence            99999999999998877789999999999999999999999998854        6999999999999999999999999


Q ss_pred             HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ++||||||++|+|||||+|||||||+|++|+
T Consensus       234 tiAEyFrd~~G~~VLl~~D~itR~a~A~rei  264 (473)
T 1sky_E          234 TMAEYFRDEQGQDGLLFIDNIFRFTQAGSEV  264 (473)
T ss_dssp             HHHHHHHHHSCCEEEEEEECTHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcEEEEeccHHHHHHHHHHH
Confidence            9999999967999999999999999999986

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=100.00  E-value=1.8e-61  Score=497.11  Aligned_cols=251  Identities=25%  Similarity=0.375  Sum_probs=213.1

Q ss_pred             eeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCcc
Q 018957           87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV  166 (348)
Q Consensus        87 ~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~  166 (348)
                      .|+|++|.|++|++++..+ +.++..+++ . +.++..||+.+.++ .+.+++|++|.||++|++|.+||++++||||++
T Consensus        10 ~G~V~~V~G~vv~v~g~~~-~~~gE~v~v-~-~~~l~gEVi~~~~d-~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~   85 (600)
T 3vr4_A           10 IGKIIKVSGPLVMAENMSE-ASIQDMCLV-G-DLGVIGEIIEMRQD-VASIQVYEETSGIGPGEPVRSTGEALSVELGPG   85 (600)
T ss_dssp             CEEEEEEETTEEEEESCTT-SCTTCEEEE-T-TTTEEEEEEEEETT-EEEEEESSCCTTCCTTCEEEECSSSSEEEESTT
T ss_pred             ceEEEEEECcEEEEEcCCC-CccCCEEEE-C-CCcEEEEEEEEcCC-cEEEEEccCCCCCCCCCEEEECCCCCEEEeCHH
Confidence            6999999999999984322 233322333 3 24688999998665 567999999999999999999999999999999


Q ss_pred             ccccEEeeeCcccccC----C-----------CCcc--------------------------------------------
Q 018957          167 TLGRIMNVIGEPIDEK----G-----------DLKT--------------------------------------------  187 (348)
Q Consensus       167 lLGRViD~lG~PiD~~----g-----------~i~~--------------------------------------------  187 (348)
                      |||||+|++|+|||++    +           ++..                                            
T Consensus        86 lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~  165 (600)
T 3vr4_A           86 IISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGT  165 (600)
T ss_dssp             CTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEE
T ss_pred             HHhhhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCCce
Confidence            9999999999999987    4           1211                                            


Q ss_pred             -----------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCc
Q 018957          188 -----------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG  238 (348)
Q Consensus       188 -----------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvG  238 (348)
                                                   .++||++.+ |++.+|.++++||+||||+||+|+||+||||++|||++|+|
T Consensus       166 v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~~-~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~G  244 (600)
T 3vr4_A          166 VQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVRRG-RPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAG  244 (600)
T ss_dssp             EEEECCEEECTTSCCEEEEETTEEEEECSCEEEETTSC-CCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSC
T ss_pred             EEEecCCcceeceeEEEEeccCCcccccccccccccCC-CchhhccCCCceecccchhhhccCCccCCCEEeeecCCCcc
Confidence                                         124566554 44679999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957          239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV  318 (348)
Q Consensus       239 KT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ti  318 (348)
                      ||+|+++|+++   .+.++|||++||||+||++||+++|++.....+| +..++||++|++|+|+||.+|++++|+|+|+
T Consensus       245 KT~L~~~ia~~---~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G-~~~m~rtvvV~~tsd~p~~~R~~~~~~alti  320 (600)
T 3vr4_A          245 KTVVQHQIAKW---SDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTG-ESLMERTVLIANTSNMPVAAREASIYTGITI  320 (600)
T ss_dssp             HHHHHHHHHHH---SSCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTC-SBGGGGEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---cCCCEEEEEEecccHHHHHHHHHHHHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            99999988765   2568999999999999999999999873221122 2357899999999999999999999999999


Q ss_pred             HHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          319 AEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       319 AEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      |||||| +|+|||+++||+||||+|+||+
T Consensus       321 AEyfrd-~G~dVLl~~Ds~tR~A~A~rEi  348 (600)
T 3vr4_A          321 AEYFRD-MGYDVAIMADSTSRWAEALREM  348 (600)
T ss_dssp             HHHHHT-TTCEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHH-cCCCEEEEecchHHHHHHHHHH
Confidence            999999 7999999999999999999986

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=100.00  E-value=2.7e-61  Score=494.13  Aligned_cols=251  Identities=28%  Similarity=0.391  Sum_probs=213.1

Q ss_pred             eeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCcc
Q 018957           87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV  166 (348)
Q Consensus        87 ~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~  166 (348)
                      .|+|++|.|++|++++..+ +.++..+++ . +.++..||+++.+++ +.+++|++|.||++|++|.+||++++||||++
T Consensus         3 ~G~V~~V~G~vv~v~g~~~-~~~gE~v~v-~-~~~l~gEVi~~~~d~-~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~   78 (578)
T 3gqb_A            3 QGVIQKIAGPAVIAKGMLG-ARMYDISKV-G-EEGLVGEIIRLDGDT-AFVQVYEDTSGLKVGEPVVSTGLPLAVELGPG   78 (578)
T ss_dssp             EEEEEEEETTEEEEESCTT-CCTTEEEEE-T-TTTEEEEEEEEETTE-EEEEESSCCTTCCTTCEEEEEEEESEEEESTT
T ss_pred             eeEEEEEECCEEEEEcCCC-CccCCEEEE-C-CCcEEEEEEEEcCCc-EEEEEcCCCCCCCCCCEEEECCCCCEEEeCHH
Confidence            6999999999999984332 233322333 2 246889999986655 56999999999999999999999999999999


Q ss_pred             ccccEEeeeCcccccC----CC----------Cccc--------------------------------------------
Q 018957          167 TLGRIMNVIGEPIDEK----GD----------LKTE--------------------------------------------  188 (348)
Q Consensus       167 lLGRViD~lG~PiD~~----g~----------i~~~--------------------------------------------  188 (348)
                      |||||+|++|+|||++    ++          +..+                                            
T Consensus        79 lLGrV~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~  158 (578)
T 3gqb_A           79 MLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVK  158 (578)
T ss_dssp             CTTCEECTTSCBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEE
T ss_pred             HhhhhhCcCCCcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeE
Confidence            9999999999999987    32          1111                                            


Q ss_pred             --------------------------ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHH
Q 018957          189 --------------------------HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL  242 (348)
Q Consensus       189 --------------------------~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L  242 (348)
                                                ++||++.+ +++.+|.++++||+||||+||+|+||+||||++|||++|+|||+|
T Consensus       159 ~i~~~G~~~v~~~i~~~~~g~~i~~~~~wPv~~~-~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l  237 (578)
T 3gqb_A          159 EVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRA-RPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT  237 (578)
T ss_dssp             EECCSEEECTTSCSEEETTCCEECSCEEEETTSC-CCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHH
T ss_pred             EeccCCcccccceeEEeecCccccccccccccCC-CChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHH
Confidence                                      23556555 346799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 018957          243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF  322 (348)
Q Consensus       243 ~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyf  322 (348)
                      +++|+++   .+.++|||++||||+||++||+++|++.....+| ++.++||++|++|+|+||.+|++++|+|+|+||||
T Consensus       238 ~~~ia~~---~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G-~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyf  313 (578)
T 3gqb_A          238 QQSLAKW---SNADVVVYVGSGERGNEMTDVLVEFPELTDPKTG-GPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYF  313 (578)
T ss_dssp             HHHHHHH---SSCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTS-SBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc---cCCCEEEEEEecccHHHHHHHHHHHHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence            9988765   2568999999999999999999999874221122 23678999999999999999999999999999999


Q ss_pred             hhcCCCcEEEEEechhHHHhhhccc
Q 018957          323 RDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       323 rd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      || +|+|||+++||+||||+|+||+
T Consensus       314 rd-~G~dVLl~~Ds~tR~A~A~rEi  337 (578)
T 3gqb_A          314 RD-QGFSVALMADSTSRWAEALREI  337 (578)
T ss_dssp             HH-TTCEEEECCSCHHHHHHHHHHH
T ss_pred             HH-cCCCEEEEecChHHHHHHHHHH
Confidence            99 7999999999999999999986

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=100.00  E-value=2.1e-61  Score=495.14  Aligned_cols=251  Identities=27%  Similarity=0.393  Sum_probs=168.6

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhh-hceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG  164 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~-~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG  164 (348)
                      ..|+|.+|.|+++.++   |++.+. +++..+. +.++..||+.+ +++.+.+++|+++.||++|++|.+||++++||||
T Consensus         3 ~~G~V~~V~G~iv~~~---g~~~~~~gElv~v~-~~~l~geVi~l-~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG   77 (588)
T 3mfy_A            3 AKGRIIRVTGPLVVAD---GMKGAKMYEVVRVG-ELGLIGEIIRL-EGDKAVIQVYEETAGVRPGEPVVGTGASLSVELG   77 (588)
T ss_dssp             ---------------------------------------------------------------CCCCCSSSSSCCEEEES
T ss_pred             ceeEEEEEECCEEEEE---cCCCCccCCEEEEc-CCceEEEEEEe-cCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeC
Confidence            4699999999999986   776443 3332222 23578888876 5666779999999999999999999999999999


Q ss_pred             ccccccEEeeeCcccccCCCC--------------c--------------------------------------------
Q 018957          165 RVTLGRIMNVIGEPIDEKGDL--------------K--------------------------------------------  186 (348)
Q Consensus       165 ~~lLGRViD~lG~PiD~~g~i--------------~--------------------------------------------  186 (348)
                      ++|||||+|++|+|||+++++              .                                            
T Consensus        78 ~gLLGrV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g  157 (588)
T 3mfy_A           78 PRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEG  157 (588)
T ss_dssp             TTCTTCEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCE
T ss_pred             HHHHhhccCCCCCcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCc
Confidence            999999999999999997431              0                                            


Q ss_pred             -------------------------------ccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCC
Q 018957          187 -------------------------------TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA  235 (348)
Q Consensus       187 -------------------------------~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~  235 (348)
                                                     ..++||++.++| +++|.++++||+||||+||+|+||+||||++|||++
T Consensus       158 ~v~~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~~~p-~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~  236 (588)
T 3mfy_A          158 EIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPA  236 (588)
T ss_dssp             EEEEECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTSCCC-CSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCC
T ss_pred             eEEEeccCCcccccceEEEEecCCCccccccccccccccCCCc-hhhhccCCcccccCcchhhccCCcccCCeEEeecCC
Confidence                                           012467765554 689999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHH
Q 018957          236 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG  315 (348)
Q Consensus       236 GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a  315 (348)
                      |+|||+|+++|+++   .+.++|||++||||+||++||+++|++.....++ +..++||++|++|+|+||.+|++++|+|
T Consensus       237 g~GKT~L~~~ia~~---~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g-~~~m~rtvvV~~tsd~p~~~r~~~~~~a  312 (588)
T 3mfy_A          237 GSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG-KPLMERTVLIANTSNMPVAAREASIYTG  312 (588)
T ss_dssp             SHHHHHHHHHHHHH---SSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTT-EEGGGGEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhc---cCCCEEEEEEecccHHHHHHHHHHHHHhcccccc-cccccceEEEEECCCCCHHHHHHHHHHH
Confidence            99999999987764   3568999999999999999999999873221111 2357899999999999999999999999


Q ss_pred             HHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          316 LTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       316 ~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|+|||||| +|+|||+++||+||||+|+||+
T Consensus       313 ~tiAEyfrd-~G~dVLl~~DsltR~A~A~rEi  343 (588)
T 3mfy_A          313 ITIAEYFRD-MGYDVALMADSTSRWAEALREI  343 (588)
T ss_dssp             HHHHHHHHH-TTCEEEEEEECTTTCCCCC---
T ss_pred             HHHHHHHHH-cCCCEEEeecchHHHHHHHHHH
Confidence            999999999 7999999999999999999997

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=100.00  E-value=3.8e-44  Score=355.51  Aligned_cols=183  Identities=18%  Similarity=0.279  Sum_probs=156.6

Q ss_pred             CCCCCCCEEEecCCCceecCCccccccEEeeeCccccc-CCCCcccccccccCCCcchhhccccc-ceeecceeeeecee
Q 018957          144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQ-QILVTGIKVVDLLA  221 (348)
Q Consensus       144 ~GL~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PiD~-~g~i~~~~~~pi~~~~p~~~~R~~~~-e~l~TGIkvID~l~  221 (348)
                      .+|+.||.|....++.+-.--..-|+||.+++|++.+. ......++..|+     +|.+|..++ ++++||+|+||+|+
T Consensus        96 ~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~~~~r~~fe~l~Pi-----~P~~R~~le~e~~~tGiraID~l~  170 (427)
T 3l0o_A           96 FNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVNFDNLTPD-----YPRERFILETDPKIYSTRLIDLFA  170 (427)
T ss_dssp             TTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC----CCCCGGGSCEE-----CCCSBCCCCCSTTCHHHHHHHHHS
T ss_pred             cCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHHhccccccccCCCC-----Cchhhccccccchhccchhhhhcc
Confidence            69999999998877666544445778999999988775 333334444444     589999998 99999999999999


Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEec
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ  300 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~t  300 (348)
                      |||||||++|||++|+|||+|+++|+++.+++|.+ .|||++||||++|+++|+++|               +.+||++|
T Consensus       171 PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~---------------~G~VV~at  235 (427)
T 3l0o_A          171 PIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIREST---------------NAIVIAAP  235 (427)
T ss_dssp             CCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSC---------------CSEEEECC
T ss_pred             cccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHh---------------CCeEEEEC
Confidence            99999999999999999999999999887766777 579999999999998766554               13799999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       301 sdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|+||.+|++++|+|+|+|||||| +|+|||+++|||||||+|+||+
T Consensus       236 adep~~~r~~~a~~altiAEyfrd-~G~dVLil~DslTR~A~A~rEv  281 (427)
T 3l0o_A          236 FDMPPDKQVKVAELTLEMAKRLVE-FNYDVVILLDSLTRLARVYNIV  281 (427)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHH-TTCEEEEEEECHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEecccchHHHHHHHHH
Confidence            999999999999999999999999 8999999999999999999986

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=100.00  E-value=2.3e-41  Score=340.50  Aligned_cols=247  Identities=23%  Similarity=0.382  Sum_probs=212.8

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEee-cCc---eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCC----
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSV---RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS----  157 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~~~---~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~----  157 (348)
                      .+|+|++|.|+++++++.  .+.+.+.+++.. .+.   ...+||+. ++++.+++++|+++.||++|+.|.+||+    
T Consensus         9 ~~g~v~~v~g~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~ev~~-~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~~   85 (438)
T 2dpy_A            9 RYGRLTRATGLVLEATGL--QLPLGATCIIERQDGPETKEVESEVVG-FNGQRLFLMPLEEVEGILPGARVYARNGHGDG   85 (438)
T ss_dssp             CCEEEEECSSSSEEEESC--CCCSSCEEEEEECSTTSCEEEEEEEEE-CCTTCEEEEESSCCTTCCTTEEEEEC------
T ss_pred             eeeEEEEEECcEEEEEeC--CCCCCCEEEEecCCCCccccEEEEEEE-EcCCEEEEEEccCCCCCCCCCEEEECCCcccc
Confidence            479999999999999854  344444355543 222   57889996 6888999999999999999999999999    


Q ss_pred             ---CceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecC
Q 018957          158 ---PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGG  234 (348)
Q Consensus       158 ---~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~  234 (348)
                         ++++|+|+++||||+|++|+|+|+++++....+||++.++|++.++..++.++.||+++||.++|+++||+++|||+
T Consensus        86 ~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~  165 (438)
T 2dpy_A           86 LQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAG  165 (438)
T ss_dssp             ----CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEEC
T ss_pred             ccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEECC
Confidence               99999999999999999999999998887777899999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHH
Q 018957          235 AGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLT  314 (348)
Q Consensus       235 ~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~  314 (348)
                      +|+|||||+..|+...   +.+..+|.++|+|++|+.++++++.+.+        .+++++.+++|+++|+..++.+++.
T Consensus       166 sGsGKSTLl~~Iag~~---~~~~G~i~~~G~r~~ev~~~~~~~~~~~--------~l~r~i~~v~q~~~~~~~~~~v~~~  234 (438)
T 2dpy_A          166 SGVGKSVLLGMMARYT---RADVIVVGLIGERGREVKDFIENILGPD--------GRARSVVIAAPADVSPLLRMQGAAY  234 (438)
T ss_dssp             TTSSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHHTTTHHH--------HHHTEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhccc---CCCeEEEEEeceecHHHHHHHHhhcccc--------ccCceEEEEECCCCCHHHHHHHHHH
Confidence            9999999987666542   4577899999999999988766543322        2358899999999999999999999


Q ss_pred             HHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          315 GLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       315 a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ++++||||++ ++++|+.++|+++||+++++++
T Consensus       235 ~~~~ae~~~~-~~~~v~~~ld~l~~lS~g~qrv  266 (438)
T 2dpy_A          235 ATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREI  266 (438)
T ss_dssp             HHHHHHHHHT-TTCEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-CCCCHHHHHHhHHHHHHHHHHH
Confidence            9999999999 7999999999999999998654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=100.00  E-value=6e-40  Score=325.77  Aligned_cols=183  Identities=19%  Similarity=0.262  Sum_probs=149.1

Q ss_pred             CCCCCCCEEEecCCCceecCCccccccEEeeeCccccc-CCCCcccccccccCCCcchhhccccc----ceeecceeeee
Q 018957          144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQ----QILVTGIKVVD  218 (348)
Q Consensus       144 ~GL~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PiD~-~g~i~~~~~~pi~~~~p~~~~R~~~~----e~l~TGIkvID  218 (348)
                      .+|+.||.|...-++.+=.--..-|-+|-...|.+.+. ++.+..++..|++     |.+|..++    +|++||||+||
T Consensus        92 ~~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~~pe~~~~ri~Fe~ltp~y-----P~er~~Le~~~~~~~~tGiraID  166 (422)
T 3ice_A           92 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLH-----ANSRLRMERGNGSTEDLTARVLD  166 (422)
T ss_dssp             HTCCTTCEEEEEEECCCSSCCSEEEEEEEEESSSCHHHHTTSCCTTTSCEES-----CCSBCCCCCTTCCTTHHHHHHHH
T ss_pred             cCCCCCCEEEEEEeCCCccchHHHHhccCcccCCChhhhcCCceeccccccC-----CCCccccccCCCCcccccceeee
Confidence            58999999987654433211111222444445555443 4556666667777     45666666    89999999999


Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEE
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV  297 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV  297 (348)
                      +++|++||||++|||++|+|||+|+++++++.+++|.+ .|||++||||++|+++|++++               +++||
T Consensus       167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~---------------~~~vV  231 (422)
T 3ice_A          167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV---------------KGEVV  231 (422)
T ss_dssp             HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC---------------SSEEE
T ss_pred             eeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh---------------CeEEE
Confidence            99999999999999999999999999998887777777 589999999999998865443               58999


Q ss_pred             EecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       298 ~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ++|+|+||.+|++++++|+++|||||| +|+|||+++|||||||+|++|+
T Consensus       232 ~atadep~~~r~~~a~~alt~AEyfrd-~G~dVLil~DslTR~A~A~rev  280 (422)
T 3ice_A          232 ASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTV  280 (422)
T ss_dssp             EECTTSCHHHHHHHHHHHHHHHHHHHH-TSCEEEEEEECHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEeCchHHHHHHHHH
Confidence            999999999999999999999999999 8999999999999999999986

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=100.00  E-value=2e-36  Score=296.21  Aligned_cols=177  Identities=30%  Similarity=0.495  Sum_probs=160.2

Q ss_pred             CceecCCccccccEEeeeCcccccCC-CCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCC
Q 018957          158 PITVPVGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG  236 (348)
Q Consensus       158 ~l~VpVG~~lLGRViD~lG~PiD~~g-~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~G  236 (348)
                      +++||||++|||||+|++|+|||+++ ++...++||++.++|++.+|..+++++.||+++||.++|+++||+++|||++|
T Consensus         2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG   81 (347)
T 2obl_A            2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG   81 (347)
T ss_dssp             CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred             CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence            68999999999999999999999998 88778899999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957          237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL  316 (348)
Q Consensus       237 vGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~  316 (348)
                      +|||||+..|+.+.   +.+..+|.++|||.+|+.+++..+.+         ..+++++++++++++|+.+|+.+++.++
T Consensus        82 aGKTTLl~~I~g~~---~~~~g~i~~~G~~~~ev~~~i~~~~~---------~~~~~~v~~~~~~~~~~~~r~~~~~~~~  149 (347)
T 2obl_A           82 VGKSTLLGMICNGA---SADIIVLALIGERGREVNEFLALLPQ---------STLSKCVLVVTTSDRPALERMKAAFTAT  149 (347)
T ss_dssp             SSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHTTSCH---------HHHTTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCC---CCCEEEEEEecccHHHHHHHHHhhhh---------hhhhceEEEEECCCCCHHHHHHHHHHHH
Confidence            99999987766542   46788999999999999776544211         1246899999999999999999999999


Q ss_pred             HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ++||||+| +|+||++++|+++||++|++++
T Consensus       150 ~~ae~~~~-~~~~vl~~ld~~~~lS~g~r~v  179 (347)
T 2obl_A          150 TIAEYFRD-QGKNVLLMMDSVTRYARAARDV  179 (347)
T ss_dssp             HHHHHHHT-TTCEEEEEEETHHHHHHHHHHH
T ss_pred             HHHHHHHh-ccccHHHHHhhHHHHHHHHHHH
Confidence            99999999 7999999999999999999765

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.83  E-value=3e-05  Score=75.38  Aligned_cols=111  Identities=14%  Similarity=0.220  Sum_probs=73.4

Q ss_pred             ceeecceeeeeceee------cccCceeEeecCCCCcHHHHHHHHHHHHHhhc-CCEEEEEEeeccchhHHHHHHHHHHc
Q 018957          208 QILVTGIKVVDLLAP------YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGFSVFAGVGERTREGNDLYREMIES  280 (348)
Q Consensus       208 e~l~TGIkvID~l~P------igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~-~~~~V~~~IGER~rEv~~~~~e~~~~  280 (348)
                      +.+.||+..+|.++-      +.+| .+.|+|++|+|||+|+.+++.+.++.. +..++|+-.-+..+..     .+.+.
T Consensus         5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~l   78 (333)
T 3io5_A            5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSM   78 (333)
T ss_dssp             -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHT
T ss_pred             CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHh
Confidence            567899999999998      8899 999999999999999999998876542 5678887544443332     24555


Q ss_pred             CccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHh--hhcCCCcEEEEEechhHHH
Q 018957          281 GVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF--RDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       281 ~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyf--rd~~G~dVLli~DslTR~A  341 (348)
                      |+-       .++ ++++ +.+  ..++.     ++.+++.+  .. +++--|||+||++-+.
T Consensus        79 Gvd-------~d~-llv~-~~~--~~E~~-----~l~i~~~l~~i~-~~~~~lvVIDSI~aL~  124 (333)
T 3io5_A           79 GVD-------PER-VIHT-PVQ--SLEQL-----RIDMVNQLDAIE-RGEKVVVFIDSLGNLA  124 (333)
T ss_dssp             TCC-------GGG-EEEE-ECS--BHHHH-----HHHHHHHHHTCC-TTCCEEEEEECSTTCB
T ss_pred             CCC-------HHH-eEEE-cCC--CHHHH-----HHHHHHHHHHhh-ccCceEEEEecccccc
Confidence            531       123 3333 222  23332     13333333  22 4778899999998764

>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1

Probab=97.80  E-value=8.1e-06  Score=56.87  Aligned_cols=51  Identities=53%  Similarity=0.683  Sum_probs=34.0

Q ss_pred             ChhhhHhHHHhhhhcccCCC--CCCCCCCCc-CCCcccccCCchhhhhhhHHHH
Q 018957            1 MASRRLLSSLLRSSVRRSPS--KSSLSNSSV-FSPAATRRASPYGHLLSRVSEY   51 (348)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   51 (348)
                      ||+||+|++|+|.+..+..-  .-++-+|-+ +.....+|++|.|++++|+.+|
T Consensus         1 masrrllasllrqsaqrggglisrslgnsipksasrassraspkgfllnravqy   54 (54)
T 1pyv_A            1 MASRRLLASLLRQSAQRGGGLISRSLGNSIPKSASRASSRASPKGFLLNRAVQY   54 (54)
T ss_dssp             -CCSHHHHHHHHHHHTTSSCSSSSTGGGGTTTTSTTTSTTCSHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHHHHHHhCCceeehhhcccCcchhhhhhcccCccchhhhhhhcC
Confidence            89999999999988776221  111111111 2334578899999999999876

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.77  E-value=2.1e-05  Score=70.06  Aligned_cols=64  Identities=31%  Similarity=0.454  Sum_probs=52.6

Q ss_pred             ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHH
Q 018957          208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGN  271 (348)
Q Consensus       208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~  271 (348)
                      +-+.||++.+|-++.  +.+|+-+.|.|++|+|||+|+.+++.|.+...+..++|.-.-+..+++.
T Consensus        10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~   75 (251)
T 2zts_A           10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLR   75 (251)
T ss_dssp             CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHH
T ss_pred             CeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHH
Confidence            458999999999997  8999999999999999999999998876554455677777777665543

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.73  E-value=8.1e-05  Score=66.17  Aligned_cols=43  Identities=28%  Similarity=0.330  Sum_probs=39.3

Q ss_pred             ceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       208 e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.+.||+..+|-++  -+.+|+-++|.|++|+|||+|+..++.+.
T Consensus         4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~   48 (243)
T 1n0w_A            4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC   48 (243)
T ss_dssp             CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999998  58899999999999999999999988764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.64  E-value=4.2e-05  Score=67.12  Aligned_cols=61  Identities=28%  Similarity=0.373  Sum_probs=47.0

Q ss_pred             ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957          208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE  269 (348)
Q Consensus       208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE  269 (348)
                      +.+.||++.+|-++.  +.+|+-++|.|++|+|||||+..++.+.+.. +.-++|...-+...+
T Consensus         3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~   65 (235)
T 2w0m_A            3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDS   65 (235)
T ss_dssp             CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHH
T ss_pred             ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHH
Confidence            467899999999985  8899999999999999999999988766543 334555554443333

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.59  E-value=0.00025  Score=68.28  Aligned_cols=59  Identities=24%  Similarity=0.213  Sum_probs=46.9

Q ss_pred             cceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec
Q 018957          207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE  265 (348)
Q Consensus       207 ~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE  265 (348)
                      .+.+.||++.+|-++  -+-+|+-+.|+|++|+|||+|+.+++.+.+..     .+.-++|+-.-+
T Consensus       101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            578999999999998  58899999999999999999999998875331     234556664433

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.58  E-value=0.00021  Score=62.78  Aligned_cols=43  Identities=33%  Similarity=0.335  Sum_probs=38.3

Q ss_pred             ceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       208 e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.+.||+..+|-++  -+.+|+.++|+|++|+|||||+..++.+.
T Consensus         5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A            5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999777  68899999999999999999999887644

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.58  E-value=0.00018  Score=69.86  Aligned_cols=111  Identities=23%  Similarity=0.382  Sum_probs=72.1

Q ss_pred             cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957          207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI  283 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~  283 (348)
                      .+.+.||+..+|-++.   +-+|.-+.|+|++|+|||+|+.+++.+.++. +..++|+-..+..+..   +  ..+.|+-
T Consensus        39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~---~--a~~lG~~  112 (349)
T 2zr9_A           39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPE---Y--AKKLGVD  112 (349)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH---H--HHHTTCC
T ss_pred             CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHH---H--HHHcCCC
Confidence            4689999999999886   6699999999999999999999999876543 4456666554433332   1  2334421


Q ss_pred             ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                             .++ +.+.. .+  ..++      .+.+++.+.. +++--+||+|+++.+.
T Consensus       113 -------~~~-l~i~~-~~--~~e~------~l~~~~~l~~-~~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          113 -------TDS-LLVSQ-PD--TGEQ------ALEIADMLVR-SGALDIIVIDSVAALV  152 (349)
T ss_dssp             -------GGG-CEEEC-CS--SHHH------HHHHHHHHHT-TTCCSEEEEECGGGCC
T ss_pred             -------HHH-eEEec-CC--CHHH------HHHHHHHHHh-cCCCCEEEEcChHhhc
Confidence                   122 22332 11  2333      2345665654 3455578999998764

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.56  E-value=0.00016  Score=70.79  Aligned_cols=55  Identities=31%  Similarity=0.580  Sum_probs=46.0

Q ss_pred             cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEE
Q 018957          207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG  262 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~  262 (348)
                      .+.+.||+..+|-++.   +.+|.-+.|+|++|+|||||+.+++.+.+. .+..++|+-
T Consensus        39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId   96 (356)
T 3hr8_A           39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFID   96 (356)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred             CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence            3678999999999988   789999999999999999999999987654 334566654

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.54  E-value=0.00029  Score=67.04  Aligned_cols=125  Identities=15%  Similarity=0.119  Sum_probs=73.7

Q ss_pred             ccceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhc-----CCEEEEEEeecc--chhHHHHHHH
Q 018957          206 EQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGER--TREGNDLYRE  276 (348)
Q Consensus       206 ~~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~-----~~~~V~~~IGER--~rEv~~~~~e  276 (348)
                      ..+.+.||+..+|-++  -+-+|+-+.|+|++|+|||+|+.+++.+.+..+     +.-++|+-.-+.  .+.+.+   -
T Consensus        85 ~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~---~  161 (324)
T 2z43_A           85 NVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN---M  161 (324)
T ss_dssp             SCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH---H
T ss_pred             cCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH---H
Confidence            3578999999999998  588999999999999999999999998754321     345666544432  333333   2


Q ss_pred             HHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957          277 MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV  343 (348)
Q Consensus       277 ~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A  343 (348)
                      +.+.++-   .++.+++ +.+... ..  .++..   ..+..++.+..+.++--+||+|+++.+..+
T Consensus       162 ~~~~g~~---~~~~~~~-l~~~~~-~~--~~~~~---~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~  218 (324)
T 2z43_A          162 AKALGLD---IDNVMNN-IYYIRA-IN--TDHQI---AIVDDLQELVSKDPSIKLIVVDSVTSHFRA  218 (324)
T ss_dssp             HHHTTCC---HHHHHHT-EEEEEC-CS--HHHHH---HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred             HHHhCCC---HHHHhcc-EEEEeC-CC--HHHHH---HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence            3333321   0001112 233322 21  22211   122333333331255678999999988654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.45  E-value=8.6e-05  Score=66.00  Aligned_cols=61  Identities=26%  Similarity=0.364  Sum_probs=47.6

Q ss_pred             ceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957          208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE  269 (348)
Q Consensus       208 e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE  269 (348)
                      +.+.||++.+|-++  -+-+|+-++|.|++|+|||+|+.+++.+.++. +.-++|+..-+...+
T Consensus         3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~   65 (247)
T 2dr3_A            3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQ   65 (247)
T ss_dssp             CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHH
T ss_pred             ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHH
Confidence            46789999999886  47899999999999999999999998877653 344566654444333

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.40  E-value=9.3e-05  Score=64.77  Aligned_cols=51  Identities=25%  Similarity=0.313  Sum_probs=41.6

Q ss_pred             eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957          210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG  264 (348)
Q Consensus       210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG  264 (348)
                      +.||++.+|-++.  +.+|+-++|.|++|+|||+|+.+++.  .  .+.-++|+..-
T Consensus         2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~   54 (220)
T 2cvh_A            2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTE   54 (220)
T ss_dssp             BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESS
T ss_pred             cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECC
Confidence            6799999999985  99999999999999999999998876  1  23445555443

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.39  E-value=0.00036  Score=68.37  Aligned_cols=111  Identities=26%  Similarity=0.373  Sum_probs=73.0

Q ss_pred             cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957          207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI  283 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~  283 (348)
                      .+.+.||+..+|.++.   +-+|.-+.|+|++|+|||+|+.+++.+.++. +..++|+-.-+..+..   +  +.+.++-
T Consensus        52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~---~--a~~~g~d  125 (366)
T 1xp8_A           52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPV---Y--ARALGVN  125 (366)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH---H--HHHTTCC
T ss_pred             CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHH---H--HHHcCCC
Confidence            4689999999999987   7799999999999999999999999887653 3456666555443332   1  2333421


Q ss_pred             ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                             .++ +++. ..+  ..++      .+.+++.+.. ++.--+||+|+++.+.
T Consensus       126 -------~~~-l~i~-~~~--~~e~------~l~~l~~l~~-~~~~~lVVIDsl~~l~  165 (366)
T 1xp8_A          126 -------TDE-LLVS-QPD--NGEQ------ALEIMELLVR-SGAIDVVVVDSVAALT  165 (366)
T ss_dssp             -------GGG-CEEE-CCS--SHHH------HHHHHHHHHT-TTCCSEEEEECTTTCC
T ss_pred             -------HHH-ceee-cCC--cHHH------HHHHHHHHHh-cCCCCEEEEeChHHhc
Confidence                   122 2233 222  1233      3445566655 3555578899998765

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.38  E-value=0.00038  Score=67.88  Aligned_cols=111  Identities=20%  Similarity=0.321  Sum_probs=70.3

Q ss_pred             cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957          207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI  283 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~  283 (348)
                      .+.+.||+..+|-++.   +-+|.-+.|.|++|+|||+|+.+++.+.++. +..++|+-.-+..+..   +  ..+.++-
T Consensus        41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~~---~--a~~~g~~  114 (356)
T 1u94_A           41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPI---Y--ARKLGVD  114 (356)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH---H--HHHTTCC
T ss_pred             CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccHH---H--HHHcCCC
Confidence            4678999999999987   7799999999999999999999999877643 3445555443322221   1  2333421


Q ss_pred             ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                             .++ +.++ ..+  ..++      .+.+++++.. ++.--+||+|+++.+.
T Consensus       115 -------~~~-l~i~-~~~--~~e~------~~~~~~~l~~-~~~~~lVVIDsl~~l~  154 (356)
T 1u94_A          115 -------IDN-LLCS-QPD--TGEQ------ALEICDALAR-SGAVDVIVVDSVAALT  154 (356)
T ss_dssp             -------GGG-CEEE-CCS--SHHH------HHHHHHHHHH-HTCCSEEEEECGGGCC
T ss_pred             -------hhh-eeee-CCC--CHHH------HHHHHHHHHh-ccCCCEEEEcCHHHhc
Confidence                   122 2233 222  2232      3345566654 2444478999998764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.34  E-value=0.00053  Score=64.74  Aligned_cols=46  Identities=20%  Similarity=0.159  Sum_probs=41.0

Q ss_pred             cccceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          205 TEQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       205 ~~~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ...+.+.||+..+|-++  -+-+|+-+.|+|++|+|||+|+.+++.+.
T Consensus        75 ~~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A           75 STVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             TTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578999999999998  58899999999999999999999998764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.31  E-value=0.00049  Score=68.20  Aligned_cols=50  Identities=30%  Similarity=0.322  Sum_probs=42.9

Q ss_pred             hcccccceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          202 EQATEQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       202 ~R~~~~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      ++......+.||+..+|-++  -+-+|+-+.|+|++|+|||||+.+++.+..
T Consensus       152 ~~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~  203 (400)
T 3lda_A          152 MRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ  203 (400)
T ss_dssp             HHHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             hhhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence            34444678999999999998  688999999999999999999998876643

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.21  E-value=0.00095  Score=64.58  Aligned_cols=49  Identities=29%  Similarity=0.299  Sum_probs=41.8

Q ss_pred             hcccccceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          202 EQATEQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       202 ~R~~~~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ++....+.+.||+..+|-++  -+-+|+-++|+|++|+|||||+..++.+.
T Consensus       105 ~~~~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          105 KKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             HHHHTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             hhhccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            33344578999999999985  68899999999999999999999988765

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.99  E-value=0.00088  Score=77.06  Aligned_cols=114  Identities=18%  Similarity=0.297  Sum_probs=77.4

Q ss_pred             cccceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          205 TEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       205 ~~~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      ...+.+.||+..+|-++.   +-+|+-+.|+|++|+|||+|+.+++.+.++ .+.-++|+-.-+...+..     +.+.+
T Consensus        10 ~~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~-~G~~vlYI~te~~~~~l~-----~~~lg   83 (1706)
T 3cmw_A           10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY-----ARKLG   83 (1706)
T ss_dssp             --CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCCCHHH-----HHHTT
T ss_pred             ccCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhh-CCCceEEEEecCccHHHH-----HHhhc
Confidence            345789999999999875   899999999999999999999999887654 345688888877766653     22233


Q ss_pred             ccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957          282 VIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       282 v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~  342 (348)
                      .       ..++- .++.. +  ..++      ...+.+++.. .++.-+||+||++-+..
T Consensus        84 ~-------dl~~i-~i~~p-~--t~e~------l~~ll~~L~~-~~~~~LVVIDSLt~L~~  126 (1706)
T 3cmw_A           84 V-------DIDNL-LCSQP-D--TGEQ------ALEICDALAR-SGAVDVIVVDSVAALTP  126 (1706)
T ss_dssp             C-------CGGGC-EEECC-S--SHHH------HHHHHHHHHH-HTCCSEEEESCSTTCCC
T ss_pred             c-------Cccce-eeecc-C--cHHH------HHHHHHHHHh-ccCCCEEEEcchhhhcc
Confidence            1       11222 23322 1  1222      2345566665 46677999999987644

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.86  E-value=0.00078  Score=62.55  Aligned_cols=54  Identities=20%  Similarity=0.176  Sum_probs=41.8

Q ss_pred             ceeec-ceeeeece-eecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEE
Q 018957          208 QILVT-GIKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA  261 (348)
Q Consensus       208 e~l~T-GIkvID~l-~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~  261 (348)
                      .-+.| |+.++|-+ +.+.+|+-++|.|++|+|||||+..++.+.+..++.-++|.
T Consensus        15 ~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~   70 (296)
T 1cr0_A           15 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA   70 (296)
T ss_dssp             CCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             CCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            45778 99988865 46889999999999999999999998887654333233343

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.72  E-value=0.0016  Score=60.00  Aligned_cols=47  Identities=21%  Similarity=0.326  Sum_probs=38.9

Q ss_pred             ccceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          206 EQQILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       206 ~~e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      ..+.+.||+.-+|-++. +-+|+-++|+|++|+|||||+.+++...+.
T Consensus         9 ~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A            9 ILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             HHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            45668899988887664 559999999999999999999999876543

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=96.69  E-value=0.013  Score=54.84  Aligned_cols=69  Identities=10%  Similarity=-0.053  Sum_probs=55.5

Q ss_pred             eeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          209 ILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       209 ~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      .+.|||.-+|-++-  +-+|--++|.|++|+|||+|+.+++.+.++ .++.++|+..-|...++.   +.+...|
T Consensus         2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~-~Ge~~~~~~~~e~~~~l~---~~~~~~G   72 (260)
T 3bs4_A            2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK-SDNLVGMFSISYPLQLII---RILSRFG   72 (260)
T ss_dssp             CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH-TTCEEEEEECSSCHHHHH---HHHHHTT
T ss_pred             cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH-CCCcEEEEEEeCCHHHHH---HHHHHcC
Confidence            35789999998875  558999999999999999999999887665 478999999999887764   3444444

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.65  E-value=0.0028  Score=73.93  Aligned_cols=116  Identities=17%  Similarity=0.300  Sum_probs=79.5

Q ss_pred             cccccceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHH
Q 018957          203 QATEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE  279 (348)
Q Consensus       203 R~~~~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~  279 (348)
                      +.+..+.+.||+..+|-++-   +-+|.-..|+|++|+|||+|+.+++.+.++ .+.-++|+-.-+..++..     +..
T Consensus         8 ~~~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~-~Ge~vlYI~tEes~~~~r-----a~~   81 (2050)
T 3cmu_A            8 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY-----ARK   81 (2050)
T ss_dssp             ----CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCCCHHH-----HHH
T ss_pred             hccCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhc-cCCceEEEEccCcchhhH-----Hhh
Confidence            33445789999999999874   779999999999999999999999987754 356789988887776653     233


Q ss_pred             cCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957          280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       280 ~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~  342 (348)
                      .+.       ..++- .++.. +  ..++      .+.+.+++.. .+.--+||+||++-+..
T Consensus        82 lG~-------dl~~i-~v~~p-~--~~e~------ll~il~~L~~-~~~~~lVVIDSISaL~~  126 (2050)
T 3cmu_A           82 LGV-------DIDNL-LCSQP-D--TGEQ------ALEICDALAR-SGAVDVIVVDSVAALTP  126 (2050)
T ss_dssp             TTC-------CTTTC-EEECC-S--SHHH------HHHHHHHHHH-HTCCSEEEESCGGGCCC
T ss_pred             hcc-------Ccccc-eecCC-C--cHHH------HHHHHHHHHh-ccCCcEEEEcChHHhhh
Confidence            332       11232 23322 1  1222      2455667766 46677899999997654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.59  E-value=0.0083  Score=56.28  Aligned_cols=99  Identities=11%  Similarity=0.114  Sum_probs=54.6

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhc-----CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEE
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY  298 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~-----~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~  298 (348)
                      ..++-+.|.|++|+|||+|+..+.+......     ....+++-+.. .....+++.++.+.-    +.. .        
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~l----~~~-~--------  107 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH-RETPYRVASAIAEAV----GVR-V--------  107 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT-SCSHHHHHHHHHHHH----SCC-C--------
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc-CCCHHHHHHHHHHHh----CCC-C--------
Confidence            5677899999999999999998876543211     22345554433 233334444443321    100 0        


Q ss_pred             ecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957          299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV  343 (348)
Q Consensus       299 ~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A  343 (348)
                      .....+...-+      -.+.+++.. .|+.++|++|++-++...
T Consensus       108 ~~~~~~~~~~~------~~l~~~l~~-~~~~~vlilDEi~~l~~~  145 (387)
T 2v1u_A          108 PFTGLSVGEVY------ERLVKRLSR-LRGIYIIVLDEIDFLPKR  145 (387)
T ss_dssp             CSSCCCHHHHH------HHHHHHHTT-SCSEEEEEEETTTHHHHS
T ss_pred             CCCCCCHHHHH------HHHHHHHhc-cCCeEEEEEccHhhhccc
Confidence            00111111111      123344555 688999999999887653

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.56  E-value=0.0018  Score=61.44  Aligned_cols=61  Identities=15%  Similarity=0.245  Sum_probs=46.9

Q ss_pred             ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957          208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE  269 (348)
Q Consensus       208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE  269 (348)
                      +.+.||++.+|-++- +.+|+-+.|.|.+|+|||+|+.+++.+.+..+ .-++|...-+..++
T Consensus        49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE~s~~~  110 (315)
T 3bh0_A           49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLEMGKKE  110 (315)
T ss_dssp             CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESSSCHHH
T ss_pred             CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECCCCHHH
Confidence            568899999998874 77999999999999999999999998877532 33444444344333

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.47  E-value=0.0024  Score=74.53  Aligned_cols=113  Identities=19%  Similarity=0.337  Sum_probs=75.0

Q ss_pred             cccceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          205 TEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       205 ~~~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      ...+.+.||+..+|.++.   +-+|.-+.|+|++|+|||+|+..++.+.++ ++..++|.-.-+-.....     ....|
T Consensus      1403 ~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-~G~~v~Fi~~e~~~~~l~-----a~~~G 1476 (2050)
T 3cmu_A         1403 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY-----ARKLG 1476 (2050)
T ss_dssp             TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCCCHHH-----HHHTT
T ss_pred             cccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEEcccccCHHH-----HHHcC
Confidence            346789999999999999   889999999999999999999999876554 455666665544322221     33334


Q ss_pred             ccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          282 VIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       282 v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                      + ++      ++  +.+.+.+  +.+      .++.+++++.+ +++--+||+|++.-|.
T Consensus      1477 ~-dl------~~--l~v~~~~--~~E------~~l~~~~~lvr-~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A         1477 V-DI------DN--LLCSQPD--TGE------QALEICDALAR-SGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp             C-CT------TT--CEEECCS--SHH------HHHHHHHHHHH-HTCCSEEEESCGGGCC
T ss_pred             C-Cc------hh--ceeecCC--hHH------HHHHHHHHHHh-cCCCCEEEEcChhHhc
Confidence            2 11      12  2333444  233      34456666655 3566689999996443

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.42  E-value=0.0021  Score=63.99  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=45.7

Q ss_pred             ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957          208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE  265 (348)
Q Consensus       208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE  265 (348)
                      .-+.||+..+|-++ -+.+|+-+.|.|++|+|||+|+.+++.+.+..++.-++|...-+
T Consensus       184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~  242 (454)
T 2r6a_A          184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM  242 (454)
T ss_dssp             CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred             CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            56889999999887 37799999999999999999999999988754333344444333

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.39  E-value=0.0047  Score=71.18  Aligned_cols=111  Identities=21%  Similarity=0.335  Sum_probs=74.9

Q ss_pred             cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957          207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI  283 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~  283 (348)
                      .+.+.||+..+|-++.   +-+|.-+.|.|++|+|||+|+.+++.+.++ .+..++|+-.-+..+..   +  +.+.|+-
T Consensus       361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~-~G~~vlyis~E~s~~~~---~--a~~lGvd  434 (1706)
T 3cmw_A          361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPI---Y--ARKLGVD  434 (1706)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCCCHH---H--HHHTTCC
T ss_pred             CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchHHH---H--HHHcCCC
Confidence            5789999999999987   889999999999999999999999988765 34567777655555543   1  3444531


Q ss_pred             ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                             .++ +.+ .+.+  ..++.      +.+++.+.. ++.--+||+|+++-+.
T Consensus       435 -------~~~-L~i-~~~~--~~e~~------l~~l~~lv~-~~~~~lVVIDSL~al~  474 (1706)
T 3cmw_A          435 -------IDN-LLC-SQPD--TGEQA------LEICDALAR-SGAVDVIVVDSVAALT  474 (1706)
T ss_dssp             -------GGG-CEE-ECCS--SHHHH------HHHHHHHHH-HTCCSEEEESCSTTCC
T ss_pred             -------HHH-eEE-cCCC--CHHHH------HHHHHHHHH-hcCCCEEEECCHHHhh
Confidence                   122 222 2222  23333      344555554 2444578999998654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.22  E-value=0.021  Score=53.40  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=54.9

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhc--CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecC
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAH--GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM  301 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~--~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~ts  301 (348)
                      .+++-+.|.|++|+|||+|+..++.......  ....+|+-+.+.. ...+++.++.+.    ++..         ....
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~~~----l~~~---------~~~~  108 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLLES----LDVK---------VPFT  108 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTT----TSCC---------CCSS
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHHHH----hCCC---------CCCC
Confidence            5678899999999999999998876543322  2345666554332 233444444222    1110         0001


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957          302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       302 dep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~  342 (348)
                      ..+....+      -.+-+++.. .++.++|++|++..+..
T Consensus       109 ~~~~~~~~------~~l~~~l~~-~~~~~vlilDE~~~l~~  142 (386)
T 2qby_A          109 GLSIAELY------RRLVKAVRD-YGSQVVIVLDEIDAFVK  142 (386)
T ss_dssp             SCCHHHHH------HHHHHHHHT-CCSCEEEEEETHHHHHH
T ss_pred             CCCHHHHH------HHHHHHHhc-cCCeEEEEEcChhhhhc
Confidence            11111111      122345555 57789999999988764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.21  E-value=0.003  Score=62.73  Aligned_cols=56  Identities=21%  Similarity=0.175  Sum_probs=43.5

Q ss_pred             ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEe
Q 018957          208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV  263 (348)
Q Consensus       208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~I  263 (348)
                      ..+.||+..+|-++- +.+|+-+.|.|++|+|||+|+.+++.+.+..++.-++|...
T Consensus       181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            567899999998874 77999999999999999999999999887533333444433

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.21  E-value=0.0037  Score=53.43  Aligned_cols=40  Identities=25%  Similarity=0.384  Sum_probs=29.1

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEE
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA  261 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~  261 (348)
                      .+.+|+.++|+|++|+|||+|+..++.......+..++|.
T Consensus        34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~   73 (180)
T 3ec2_A           34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF   73 (180)
T ss_dssp             CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence            3567999999999999999999888765532233334454

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.08  E-value=0.0032  Score=53.89  Aligned_cols=29  Identities=28%  Similarity=0.360  Sum_probs=23.5

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |..+.+|+.++|.|++|+|||||+..+..
T Consensus         3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A            3 MTDDLGGNILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred             ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence            55688999999999999999999987653

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.97  E-value=0.0049  Score=61.62  Aligned_cols=63  Identities=14%  Similarity=0.228  Sum_probs=48.3

Q ss_pred             cceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          207 QQILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      ..-+.||+..+|-++- +.+|+-+.|.|.+|+|||+|+.+++.+.+.. +.-++|...-+..+++
T Consensus       177 ~~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql  240 (444)
T 3bgw_A          177 ITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKEN  240 (444)
T ss_dssp             CCSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHH
T ss_pred             CCCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHH
Confidence            3568899999998874 7899999999999999999999999988764 3344444444444433

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=95.90  E-value=0.012  Score=59.74  Aligned_cols=55  Identities=18%  Similarity=0.225  Sum_probs=38.6

Q ss_pred             CceeEeecCCCCcHHHHHHHHHH---HHHhhcCCEEEEEEeeccc-hhHHHHHHHHHHc
Q 018957          226 GGKIGLFGGAGVGKTVLIMELIN---NVAKAHGGFSVFAGVGERT-REGNDLYREMIES  280 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~---n~a~~~~~~~V~~~IGER~-rEv~~~~~e~~~~  280 (348)
                      ..-++|.|..|+|||+|+..+.+   ...+.+-+..+++-+.+.. ....++++++.+.
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            35689999999999999998875   1223344778888777654 2455666666544

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.86  E-value=0.004  Score=62.58  Aligned_cols=64  Identities=17%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             cceeec-ceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          207 QQILVT-GIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       207 ~e~l~T-GIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      ...+.| |++.+|-++- +.+|.=+.|.|++|+|||+|+.+++.+.+..++.-++|+..-+..+++
T Consensus       221 ~~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l  286 (503)
T 1q57_A          221 SVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEET  286 (503)
T ss_dssp             TTCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHH
T ss_pred             cCCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence            346788 9999998864 678999999999999999999999998875434445555554444433

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.85  E-value=0.0045  Score=60.07  Aligned_cols=59  Identities=19%  Similarity=0.205  Sum_probs=46.6

Q ss_pred             cceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccc
Q 018957          207 QQILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT  267 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~  267 (348)
                      -.-+.||+..+|-++- +.+|+=+.|.|.+|+|||+|+.+++.+.+. + +..|.....|-.
T Consensus        26 ~~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~-g~~Vl~fSlEms   85 (338)
T 4a1f_A           26 VTGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-D-DRGVAVFSLEMS   85 (338)
T ss_dssp             CCSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-T-TCEEEEEESSSC
T ss_pred             cCcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c-CCeEEEEeCCCC
Confidence            3578899999998874 889999999999999999999999998875 2 334433444543

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.85  E-value=0.024  Score=53.96  Aligned_cols=97  Identities=13%  Similarity=0.149  Sum_probs=54.4

Q ss_pred             cCceeEe--ecCCCCcHHHHHHHHHHHHHhh----cCCE-EEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEE
Q 018957          225 RGGKIGL--FGGAGVGKTVLIMELINNVAKA----HGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV  297 (348)
Q Consensus       225 kGQr~gI--fg~~GvGKT~L~~~ii~n~a~~----~~~~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV  297 (348)
                      .++-+.|  .|++|+|||+|+..+.+.....    +.++ ++|+-+.+. ....++++++.+.    ++.. .       
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~----l~~~-~-------  115 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA-PNLYTILSLIVRQ----TGYP-I-------  115 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC-CSHHHHHHHHHHH----HTCC-C-------
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC-CCHHHHHHHHHHH----hCCC-C-------
Confidence            4566777  8999999999999887654321    1133 466655443 3344566665432    1110 0       


Q ss_pred             EecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957          298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       298 ~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~  342 (348)
                       .....+...      ..-.+.+++.. .++.++|++||+-.+..
T Consensus       116 -~~~~~~~~~------~~~~l~~~l~~-~~~~~llvlDe~~~l~~  152 (412)
T 1w5s_A          116 -QVRGAPALD------ILKALVDNLYV-ENHYLLVILDEFQSMLS  152 (412)
T ss_dssp             -CCTTCCHHH------HHHHHHHHHHH-HTCEEEEEEESTHHHHS
T ss_pred             -CCCCCCHHH------HHHHHHHHHHh-cCCeEEEEEeCHHHHhh
Confidence             000111111      11223345554 58899999999977653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.74  E-value=0.006  Score=61.82  Aligned_cols=57  Identities=23%  Similarity=0.259  Sum_probs=41.5

Q ss_pred             ceeecceeeeece-e-ecccCceeEeecCCCCcHHHHHHHHH-HHHHhhcCCEEEEEEeecc
Q 018957          208 QILVTGIKVVDLL-A-PYQRGGKIGLFGGAGVGKTVLIMELI-NNVAKAHGGFSVFAGVGER  266 (348)
Q Consensus       208 e~l~TGIkvID~l-~-PigkGQr~gIfg~~GvGKT~L~~~ii-~n~a~~~~~~~V~~~IGER  266 (348)
                      +.+.||+.++|-+ + .+.+|+..+|.|++|+|||||+..++ ....+.. .-.||+. |+.
T Consensus        19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~-g~~   78 (525)
T 1tf7_A           19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVT-FEE   78 (525)
T ss_dssp             CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEE-SSS
T ss_pred             ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEE-EeC
Confidence            5678899999865 4 68899999999999999999999863 4433312 2345543 443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.73  E-value=0.0061  Score=52.61  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=22.5

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.+|+.++|.|++|+|||||+..+..
T Consensus         4 m~~g~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            4 MNKANLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCcEEEEECcCCCCHHHHHHHHHh
Confidence            56899999999999999999987664

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.72  E-value=0.037  Score=52.08  Aligned_cols=52  Identities=23%  Similarity=0.195  Sum_probs=32.8

Q ss_pred             cCc--eeEeecCCCCcHHHHHHHHHHHHHhhc-CCEEEEEEeeccchhHHHHHHHHH
Q 018957          225 RGG--KIGLFGGAGVGKTVLIMELINNVAKAH-GGFSVFAGVGERTREGNDLYREMI  278 (348)
Q Consensus       225 kGQ--r~gIfg~~GvGKT~L~~~ii~n~a~~~-~~~~V~~~IGER~rEv~~~~~e~~  278 (348)
                      .+.  -+.|.|++|+|||+|+..+.... ... ....+++-+.. .....++++++.
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~i~~~~-~~~~~~~~~~l~   95 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTTARFVYINGFI-YRNFTAIIGEIA   95 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCCCEEEEEETTT-CCSHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcCeeEEEEeCcc-CCCHHHHHHHHH
Confidence            445  79999999999999998877654 222 23345555433 333445555543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.69  E-value=0.0056  Score=54.74  Aligned_cols=30  Identities=30%  Similarity=0.401  Sum_probs=22.6

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =+.+.+|+.++|+|++|+|||||+..+...
T Consensus        17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             -----CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            356789999999999999999999877653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.66  E-value=0.0065  Score=53.46  Aligned_cols=27  Identities=30%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      ++.+|+.++|+|++|+|||||+..+..
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999999987654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=95.65  E-value=0.018  Score=58.06  Aligned_cols=42  Identities=29%  Similarity=0.436  Sum_probs=29.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH---HhhcCCEEEEEEeecc
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV---AKAHGGFSVFAGVGER  266 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~---a~~~~~~~V~~~IGER  266 (348)
                      ..+-++|.|++|+|||+|+.++.++.   .....+.++++-+++.
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~  190 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ  190 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence            45678999999999999999887532   2222345666666665

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.61  E-value=0.0074  Score=52.71  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=22.5

Q ss_pred             eecceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          210 LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       210 l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |.++--..+.+.+..+|..++|.|++|+|||||+..+...
T Consensus        13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ---------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4455556677777889999999999999999999877643

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.52  E-value=0.01  Score=57.68  Aligned_cols=43  Identities=26%  Similarity=0.194  Sum_probs=36.1

Q ss_pred             cceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          207 QQILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       207 ~e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ...+.||+.-+|-++ -+-+|.-+.|.|++|+|||+|+.+++.+
T Consensus       103 ~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          103 TGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             STTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             hhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            345679999999887 4447888899999999999999998875

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.48  E-value=0.013  Score=58.25  Aligned_cols=37  Identities=24%  Similarity=0.446  Sum_probs=26.3

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEE
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAG  262 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~  262 (348)
                      +.-+.|.|++|+|||+|+..+.+.....+.+. ++|+-
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~  167 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT  167 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence            56789999999999999987776554333343 34443

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.34  E-value=0.016  Score=54.20  Aligned_cols=38  Identities=26%  Similarity=0.349  Sum_probs=26.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEe
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV  263 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~I  263 (348)
                      .+.-+.|.|++|+|||+|+..+++..... +.-++|+-+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~   73 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSA   73 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEH
Confidence            45679999999999999998877654322 233455543

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.32  E-value=0.1  Score=53.29  Aligned_cols=31  Identities=29%  Similarity=0.222  Sum_probs=26.9

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      +.+.+|+.++|+|++|+|||||+..|+....
T Consensus       288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             CCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence            4688999999999999999999988776543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.31  E-value=0.01  Score=50.91  Aligned_cols=25  Identities=20%  Similarity=0.310  Sum_probs=23.0

Q ss_pred             eecccCceeEeecCCCCcHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIME  245 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~  245 (348)
                      +.+.+|+-++|+|++|+|||||+..
T Consensus         4 l~i~~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            4 LTIPELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHH
Confidence            5788999999999999999999983

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.27  E-value=0.012  Score=53.57  Aligned_cols=29  Identities=17%  Similarity=0.350  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~   52 (235)
T 3tif_A           24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIG   52 (235)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred             eeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            44789999999999999999999987443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.18  E-value=0.013  Score=53.36  Aligned_cols=29  Identities=24%  Similarity=0.511  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   52 (237)
T 2cbz_A           24 ITFSIPEGALVAVVGQVGCGKSSLLSALL   52 (237)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            34688999999999999999999997543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.18  E-value=0.011  Score=52.11  Aligned_cols=28  Identities=25%  Similarity=0.311  Sum_probs=23.9

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..+|+.++|.|++|+|||||+..+....
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998766543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.14  E-value=0.012  Score=50.65  Aligned_cols=30  Identities=23%  Similarity=0.335  Sum_probs=25.8

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.+.+|+.++|.|+.|+|||||+..++...
T Consensus        28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            467899999999999999999998776543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.13  E-value=0.014  Score=50.30  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=22.4

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+.+|..++|.|++|+|||||+..+..
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999987654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.11  E-value=0.013  Score=52.96  Aligned_cols=28  Identities=25%  Similarity=0.546  Sum_probs=24.6

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+
T Consensus        23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l   50 (224)
T 2pcj_A           23 ISLSVKKGEFVSIIGASGSGKSTLLYIL   50 (224)
T ss_dssp             EEEEEETTCEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            4468899999999999999999998744

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.08  E-value=0.014  Score=53.59  Aligned_cols=29  Identities=28%  Similarity=0.491  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   56 (247)
T 2ff7_A           28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQ   56 (247)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            44688999999999999999999997543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.04  E-value=0.016  Score=53.27  Aligned_cols=29  Identities=28%  Similarity=0.306  Sum_probs=25.3

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~   50 (250)
T 2d2e_A           22 VNLVVPKGEVHALMGPNGAGKSTLGKILA   50 (250)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34689999999999999999999997554

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.04  E-value=0.014  Score=54.18  Aligned_cols=29  Identities=21%  Similarity=0.407  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~   53 (262)
T 1b0u_A           25 VSLQARAGDVISIIGSSGSGKSTFLRCIN   53 (262)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            44679999999999999999999997543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.03  E-value=0.016  Score=53.81  Aligned_cols=29  Identities=28%  Similarity=0.371  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~   67 (267)
T 2zu0_C           39 LSLDVHPGEVHAIMGPNGSGKSTLSATLA   67 (267)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34689999999999999999999997554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.03  E-value=0.015  Score=50.05  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|..++|.|++|+|||||+..+...
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            6889999999999999999887654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.01  E-value=0.016  Score=50.51  Aligned_cols=29  Identities=28%  Similarity=0.157  Sum_probs=22.8

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.+.+|..+.|.|++|+||||++..+...
T Consensus        20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           20 FQSNAMVRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             EecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999887754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.96  E-value=0.014  Score=54.35  Aligned_cols=33  Identities=21%  Similarity=0.437  Sum_probs=26.9

Q ss_pred             eeee-ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          215 KVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       215 kvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .++| .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~   58 (266)
T 4g1u_C           25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLT   58 (266)
T ss_dssp             EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHT
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            3444 34789999999999999999999997553

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=94.94  E-value=0.014  Score=51.34  Aligned_cols=26  Identities=27%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -+|+.++|+|++|+|||||+..+...
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999877653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.94  E-value=0.015  Score=52.53  Aligned_cols=29  Identities=24%  Similarity=0.354  Sum_probs=22.8

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      =+.+.+|..++|.|++|+|||||+..+..
T Consensus        19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           19 YFQSMRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             ----CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999999986654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.93  E-value=0.017  Score=58.44  Aligned_cols=59  Identities=19%  Similarity=0.322  Sum_probs=43.1

Q ss_pred             cceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc
Q 018957          207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER  266 (348)
Q Consensus       207 ~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER  266 (348)
                      .+.+.||+.-+|-++  .+.+|..++|.|++|+|||||+..++..... .+..++|..-.+.
T Consensus       260 ~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ee~  320 (525)
T 1tf7_A          260 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYEES  320 (525)
T ss_dssp             CCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSSC
T ss_pred             cceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence            356778887777553  7899999999999999999999988866543 3344455443333

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.90  E-value=0.015  Score=52.66  Aligned_cols=29  Identities=31%  Similarity=0.563  Sum_probs=25.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus        27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   55 (229)
T 2pze_A           27 INFKIERGQLLAVAGSTGAGKTSLLMMIM   55 (229)
T ss_dssp             EEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            44678899999999999999999997543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.90  E-value=0.011  Score=56.46  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=27.5

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |.-+.+.+|++++|+|++|+|||||+.-+..-
T Consensus       118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             cceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence            34578999999999999999999999876654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.90  E-value=0.017  Score=52.64  Aligned_cols=29  Identities=24%  Similarity=0.255  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   49 (243)
T 1mv5_A           21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLE   49 (243)
T ss_dssp             EEEEECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678999999999999999999997554

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.89  E-value=0.017  Score=54.24  Aligned_cols=30  Identities=30%  Similarity=0.566  Sum_probs=25.5

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~   55 (275)
T 3gfo_A           26 GINMNIKRGEVTAILGGNGVGKSTLFQNFN   55 (275)
T ss_dssp             EEEEEEETTSEEEEECCTTSSHHHHHHHHT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            344689999999999999999999997543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=94.89  E-value=0.022  Score=54.71  Aligned_cols=28  Identities=7%  Similarity=0.115  Sum_probs=24.6

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      -+++..+.|.|++|||||+++..++...
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4688899999999999999999888765

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.89  E-value=0.016  Score=54.02  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~   71 (263)
T 2olj_A           43 INVHIREGEVVVVIGPSGSGKSTFLRCLN   71 (263)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEEcCCCCcHHHHHHHHH
Confidence            44678999999999999999999997543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.87  E-value=0.01  Score=52.90  Aligned_cols=27  Identities=26%  Similarity=0.256  Sum_probs=19.9

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.++|.|++|+|||||+..+.
T Consensus        22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           22 MLKSVGVILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CCEECCCEEEEECSCC----CHHHHHH
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHH
Confidence            356789999999999999999998776

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.87  E-value=0.016  Score=52.94  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=24.9

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~   53 (240)
T 1ji0_A           25 IDLKVPRGQIVTLIGANGAGKTTTLSAIA   53 (240)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678999999999999999999987543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.85  E-value=0.012  Score=50.81  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=27.5

Q ss_pred             eeeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       215 kvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .+++- +++.+|.+++|+|++|+|||||+..+.
T Consensus        16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~   47 (210)
T 1pui_A           16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLT   47 (210)
T ss_dssp             SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence            45555 899999999999999999999987665

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.85  E-value=0.016  Score=53.96  Aligned_cols=29  Identities=28%  Similarity=0.311  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~   66 (271)
T 2ixe_A           38 LTFTLYPGKVTALVGPNGSGKSTVAALLQ   66 (271)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            34688999999999999999999997543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.85  E-value=0.016  Score=53.62  Aligned_cols=29  Identities=28%  Similarity=0.431  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        34 vsl~i~~Gei~~l~G~NGsGKSTLlk~l~   62 (256)
T 1vpl_A           34 ISFEIEEGEIFGLIGPNGAGKTTTLRIIS   62 (256)
T ss_dssp             EEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred             eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            34688999999999999999999997543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.85  E-value=0.015  Score=52.57  Aligned_cols=29  Identities=24%  Similarity=0.556  Sum_probs=24.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+-+|+.++|+|++|+|||||+.-+.
T Consensus        28 vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~   56 (214)
T 1sgw_A           28 ITMTIEKGNVVNFHGPNGIGKTTLLKTIS   56 (214)
T ss_dssp             EEEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            33678899999999999999999987543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.83  E-value=0.016  Score=54.42  Aligned_cols=30  Identities=33%  Similarity=0.400  Sum_probs=25.5

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~   68 (279)
T 2ihy_A           39 KISWQIAKGDKWILYGLNGAGKTTLLNILN   68 (279)
T ss_dssp             EEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred             eeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            344678999999999999999999987543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.82  E-value=0.015  Score=53.62  Aligned_cols=29  Identities=24%  Similarity=0.382  Sum_probs=25.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~   54 (257)
T 1g6h_A           26 VSISVNKGDVTLIIGPNGSGKSTLINVIT   54 (257)
T ss_dssp             ECCEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred             eEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678999999999999999999997543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.82  E-value=0.019  Score=53.11  Aligned_cols=29  Identities=24%  Similarity=0.295  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~   67 (260)
T 2ghi_A           39 INFFIPSGTTCALVGHTGSGKSTIAKLLY   67 (260)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred             eEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            34678999999999999999999997554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.76  E-value=0.28  Score=47.01  Aligned_cols=40  Identities=33%  Similarity=0.295  Sum_probs=29.1

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEe
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV  263 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~I  263 (348)
                      -.+|+.++|.|++|+||||++..++..... ++.-+.+.+.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~  165 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAAS  165 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEee
Confidence            368999999999999999999988765533 3333334433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.76  E-value=0.022  Score=61.58  Aligned_cols=40  Identities=28%  Similarity=0.534  Sum_probs=29.2

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHH---hhcCCEEEEEEeecc
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVA---KAHGGFSVFAGVGER  266 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a---~~~~~~~V~~~IGER  266 (348)
                      ..++|.|..|+|||+|+.+++++..   ....+.++++-+++.
T Consensus       148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~  190 (1249)
T 3sfz_A          148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ  190 (1249)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence            4578999999999999998876531   113456667777764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.75  E-value=0.017  Score=53.24  Aligned_cols=30  Identities=27%  Similarity=0.461  Sum_probs=25.5

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~   47 (249)
T 2qi9_C           18 PLSGEVRAGEILHLVGPNGAGKSTLLARMA   47 (249)
T ss_dssp             EEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred             eeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            344678999999999999999999997543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.74  E-value=0.019  Score=56.15  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=27.6

Q ss_pred             eee-eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          215 KVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       215 kvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .++ |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia   51 (359)
T 3fvq_A           18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA   51 (359)
T ss_dssp             EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHh
Confidence            444 455789999999999999999999997554

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.70  E-value=0.019  Score=53.27  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~   54 (266)
T 2yz2_A           26 VSLVINEGECLLVAGNTGSGKSTLLQIVA   54 (266)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            34689999999999999999999997543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.70  E-value=0.28  Score=46.72  Aligned_cols=44  Identities=25%  Similarity=0.215  Sum_probs=32.2

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE  265 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE  265 (348)
                      +...+|+.++|.|+.|+||||++..++...+.. +.-+.++...-
T Consensus       100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~  143 (320)
T 1zu4_A          100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADT  143 (320)
T ss_dssp             CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            357889999999999999999999888765543 33344444443

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.70  E-value=0.018  Score=53.17  Aligned_cols=29  Identities=28%  Similarity=0.508  Sum_probs=25.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~   52 (253)
T 2nq2_C           24 LNFDLNKGDILAVLGQNGCGKSTLLDLLL   52 (253)
T ss_dssp             EEEEEETTCEEEEECCSSSSHHHHHHHHT
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence            33678999999999999999999997543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.65  E-value=0.024  Score=52.55  Aligned_cols=34  Identities=29%  Similarity=0.364  Sum_probs=27.5

Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +++-+. +.+|+.++|.|++|+|||||+..++.-.
T Consensus        16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            344444 8899999999999999999998776543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.60  E-value=0.25  Score=41.72  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..+.|.|++|+|||+|+..+++..
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            359999999999999999887654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.58  E-value=0.019  Score=49.96  Aligned_cols=27  Identities=33%  Similarity=0.429  Sum_probs=22.0

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..+|..++|.|++|+|||||+..+...
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999876543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.56  E-value=0.024  Score=55.93  Aligned_cols=33  Identities=24%  Similarity=0.382  Sum_probs=27.2

Q ss_pred             eee-eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          215 KVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       215 kvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .++ |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia   50 (381)
T 3rlf_A           17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA   50 (381)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHH
Confidence            344 444789999999999999999999997554

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=94.53  E-value=0.024  Score=55.32  Aligned_cols=30  Identities=27%  Similarity=0.509  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia   62 (355)
T 1z47_A           33 GVSFQIREGEMVGLLGPSGSGKTTILRLIA   62 (355)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence            455688999999999999999999997554

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.53  E-value=0.025  Score=55.24  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=26.1

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia   50 (359)
T 2yyz_A           21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLA   50 (359)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEcCCCEEEEEcCCCchHHHHHHHHH
Confidence            455789999999999999999999997554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=94.50  E-value=0.13  Score=57.31  Aligned_cols=53  Identities=11%  Similarity=0.080  Sum_probs=35.2

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH--HHhhcCCEEEEEEeeccchhHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN--VAKAHGGFSVFAGVGERTREGNDLYREMIE  279 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n--~a~~~~~~~V~~~IGER~rEv~~~~~e~~~  279 (348)
                      ..-++|.|..|+|||||+.++.+.  ......+-++++-+++... ...++..+.+
T Consensus       150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d-~~~IL~~Ll~  204 (1221)
T 1vt4_I          150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQK  204 (1221)
T ss_dssp             SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS-HHHHHHHHHH
T ss_pred             CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC-HHHHHHHHHH
Confidence            457899999999999999988753  2222223367777777654 3455555544

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.50  E-value=0.025  Score=55.26  Aligned_cols=30  Identities=23%  Similarity=0.486  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia   50 (362)
T 2it1_A           21 NINLKIKDGEFMALLGPSGSGKSTLLYTIA   50 (362)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEECCCCEEEEECCCCchHHHHHHHHh
Confidence            445789999999999999999999997554

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.49  E-value=0.025  Score=55.45  Aligned_cols=30  Identities=27%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia   58 (372)
T 1v43_A           29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIA   58 (372)
T ss_dssp             EEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEECCCCEEEEECCCCChHHHHHHHHH
Confidence            455789999999999999999999997554

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.46  E-value=0.27  Score=46.68  Aligned_cols=41  Identities=24%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG  264 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG  264 (348)
                      ..+|..++|.|++|+||||++..++...+.. +.-+.++...
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D  141 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAAD  141 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccc
Confidence            5678899999999999999999888765432 3334444443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.44  E-value=0.08  Score=52.83  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=19.2

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .-+.|.|++|||||+|+..+.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999866543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.43  E-value=0.044  Score=47.65  Aligned_cols=27  Identities=33%  Similarity=0.395  Sum_probs=23.6

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+|+.+.|.|++|+|||||+..+....
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999998877654

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.41  E-value=0.026  Score=55.28  Aligned_cols=30  Identities=23%  Similarity=0.369  Sum_probs=26.1

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia   50 (372)
T 1g29_1           21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIA   50 (372)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEcCCCEEEEECCCCcHHHHHHHHHH
Confidence            455789999999999999999999997554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.40  E-value=0.04  Score=52.80  Aligned_cols=30  Identities=30%  Similarity=0.387  Sum_probs=26.0

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.+.+|+.++|.|++|+|||||+..++...
T Consensus        50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            568899999999999999999998776543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=94.37  E-value=0.047  Score=51.73  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=26.5

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      +.+.+|+.++|+|++|+||||++..++....
T Consensus        95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A           95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             CCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999988776543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.34  E-value=0.022  Score=55.36  Aligned_cols=30  Identities=23%  Similarity=0.416  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia   47 (348)
T 3d31_A           18 NLSLKVESGEYFVILGPTGAGKTLFLELIA   47 (348)
T ss_dssp             EEEEEECTTCEEEEECCCTHHHHHHHHHHH
T ss_pred             eeEEEEcCCCEEEEECCCCccHHHHHHHHH
Confidence            344689999999999999999999997543

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.29  E-value=0.033  Score=47.94  Aligned_cols=28  Identities=25%  Similarity=0.331  Sum_probs=24.2

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +..+|..++|.|++|+||||++..+...
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4567899999999999999999877654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=94.27  E-value=0.027  Score=49.07  Aligned_cols=29  Identities=28%  Similarity=0.272  Sum_probs=24.7

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      ...+.+|..++|.|++|+||||++..+..
T Consensus        15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           15 VPRGSKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34577899999999999999999987654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.25  E-value=0.028  Score=55.41  Aligned_cols=29  Identities=28%  Similarity=0.629  Sum_probs=25.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|.|++|+|||||+..++
T Consensus        40 vsl~i~~Ge~~~llGpsGsGKSTLLr~ia   68 (390)
T 3gd7_A           40 ISFSISPGQRVGLLGRTGSGKSTLLSAFL   68 (390)
T ss_dssp             EEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred             eeEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            34689999999999999999999997554

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.24  E-value=0.024  Score=50.02  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=21.9

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |++++|+|++|+|||||+..++...
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            7899999999999999998776544

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.22  E-value=0.025  Score=53.35  Aligned_cols=29  Identities=31%  Similarity=0.563  Sum_probs=25.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus        57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~   85 (290)
T 2bbs_A           57 INFKIERGQLLAVAGSTGAGKTSLLMMIM   85 (290)
T ss_dssp             EEEEECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            34678999999999999999999987543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.22  E-value=0.023  Score=54.20  Aligned_cols=29  Identities=24%  Similarity=0.436  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|++++|+|++|+|||||+.-+.
T Consensus        73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~  101 (306)
T 3nh6_A           73 VSFTVMPGQTLALVGPSGAGKSTILRLLF  101 (306)
T ss_dssp             EEEEECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred             eeEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence            34689999999999999999999996543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.20  E-value=0.033  Score=49.91  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=24.0

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .|..+|.-+.|.|++|+|||||+..++..
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            35568999999999999999999888754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=94.19  E-value=0.061  Score=46.72  Aligned_cols=40  Identities=23%  Similarity=0.231  Sum_probs=28.5

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG  264 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG  264 (348)
                      .+++.+.|.|++|+|||+|+..++..... ++..++|+-+.
T Consensus        50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~   89 (242)
T 3bos_A           50 DGVQAIYLWGPVKSGRTHLIHAACARANE-LERRSFYIPLG   89 (242)
T ss_dssp             CSCSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEGG
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence            46889999999999999999988765432 22234444443

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.09  E-value=0.034  Score=54.50  Aligned_cols=33  Identities=27%  Similarity=0.492  Sum_probs=27.2

Q ss_pred             eeee-eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          214 IKVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       214 IkvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      +.++ |.=+.+.+|+..+|+|++|+|||||+.-+
T Consensus        41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i   74 (366)
T 3tui_C           41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV   74 (366)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHH
Confidence            3455 44578999999999999999999998644

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.03  E-value=0.022  Score=55.36  Aligned_cols=30  Identities=23%  Similarity=0.542  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus        23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia   52 (353)
T 1oxx_K           23 NVNINIENGERFGILGPSGAGKTTFMRIIA   52 (353)
T ss_dssp             EEEEEECTTCEEEEECSCHHHHHHHHHHHH
T ss_pred             ceEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence            345688999999999999999999997544

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.01  E-value=0.032  Score=51.90  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=23.3

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+. |+.++|+|++|+|||||+.-+.
T Consensus        25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~   51 (263)
T 2pjz_A           25 NLEVN-GEKVIILGPNGSGKTTLLRAIS   51 (263)
T ss_dssp             EEEEC-SSEEEEECCTTSSHHHHHHHHT
T ss_pred             eEEEC-CEEEEEECCCCCCHHHHHHHHh
Confidence            35677 9999999999999999997554

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=94.00  E-value=0.066  Score=46.74  Aligned_cols=28  Identities=25%  Similarity=0.200  Sum_probs=23.9

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +..+|..++|.|++|+|||||+..+...
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3578899999999999999999877654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=93.93  E-value=0.038  Score=46.58  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -+|..++|.|++|+||||++..+..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999987754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=93.93  E-value=0.059  Score=50.77  Aligned_cols=25  Identities=28%  Similarity=0.521  Sum_probs=21.6

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |.-+.|.|++|+|||+|+..+++..
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5679999999999999998877654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.89  E-value=0.058  Score=50.76  Aligned_cols=27  Identities=22%  Similarity=0.143  Sum_probs=23.2

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +..+|..++|.|++|+|||||+..+..
T Consensus        76 ~~~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999999976654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=93.89  E-value=0.5  Score=44.48  Aligned_cols=40  Identities=28%  Similarity=0.141  Sum_probs=29.0

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG  264 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG  264 (348)
                      .+|..+++.|..|+||||++..++...+.. +.-+.++...
T Consensus        96 ~~~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D  135 (297)
T 1j8m_F           96 KIPYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGAD  135 (297)
T ss_dssp             SSSEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence            358999999999999999999888766543 3333344443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=93.88  E-value=0.038  Score=48.66  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=22.7

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+|.-++|.|++|+|||||+..++..
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            47889999999999999999887653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.87  E-value=0.035  Score=50.07  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=22.1

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-+|+-++|+|++|+|||||+..+...
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            468999999999999999999876543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=93.85  E-value=0.037  Score=46.36  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .|..++|.|++|+|||||+..+..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999987654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.83  E-value=0.07  Score=50.60  Aligned_cols=28  Identities=32%  Similarity=0.389  Sum_probs=24.1

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      ++|+.++|+|++|+|||||+..++....
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4799999999999999999988775543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.83  E-value=0.027  Score=50.48  Aligned_cols=26  Identities=31%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.+|+.++|+|++|+|||||+.-+.-
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhc
Confidence            47999999999999999999976653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=93.74  E-value=0.014  Score=55.76  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +|.|+++-+|+.++|+|++|+|||||+..+.
T Consensus       164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~  194 (307)
T 1t9h_A          164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAIS  194 (307)
T ss_dssp             CTTTGGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred             HHHHHhhcCCCEEEEECCCCCCHHHHHHHhc
Confidence            5778899999999999999999999987664

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=93.69  E-value=0.038  Score=46.64  Aligned_cols=26  Identities=27%  Similarity=0.498  Sum_probs=23.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +|+-++|+|++|+|||+|+..+....
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998776644

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=93.68  E-value=0.74  Score=43.08  Aligned_cols=41  Identities=20%  Similarity=0.140  Sum_probs=29.9

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER  266 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER  266 (348)
                      +|+.++|.|..|+||||++..++...+.. +.-+.++...-+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~  137 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQ  137 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcc
Confidence            89999999999999999999888765543 333344444433

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=93.67  E-value=0.33  Score=45.09  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=21.5

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..+.-++|.|++|+|||+|+..++..
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHH
Confidence            45667999999999999999877653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=93.67  E-value=0.045  Score=47.79  Aligned_cols=27  Identities=30%  Similarity=0.459  Sum_probs=23.9

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.+|.-+.|.|++|+|||||+..+...
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            578899999999999999999887654

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=93.62  E-value=0.077  Score=51.72  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=26.2

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.+.+|+.++|+|++|+||||++..++...
T Consensus       152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             CCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            357899999999999999999998877654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=93.59  E-value=0.04  Score=52.41  Aligned_cols=27  Identities=26%  Similarity=0.186  Sum_probs=23.8

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+.+|..++|.|++|+|||||+..+..
T Consensus        86 ~~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           86 DRPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCchHHHHHHHHHh
Confidence            378999999999999999999976654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=93.52  E-value=0.34  Score=48.56  Aligned_cols=28  Identities=25%  Similarity=0.317  Sum_probs=24.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      ++..+.+.|.+|+||||++..++...++
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            5778999999999999999999876654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=93.51  E-value=0.043  Score=47.77  Aligned_cols=22  Identities=41%  Similarity=0.693  Sum_probs=19.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +++|.|++|+|||||+..++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999876643

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=93.48  E-value=0.047  Score=46.31  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+|..+.|.|++|+||||++..+..
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999987764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=93.42  E-value=0.042  Score=49.37  Aligned_cols=25  Identities=36%  Similarity=0.518  Sum_probs=20.8

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+.+|  ++|+|++|+|||+|+..+..
T Consensus        47 ~~~~g--~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           47 RIPKG--VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             CCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCe--EEEECCCCCCHHHHHHHHHH
Confidence            34566  99999999999999987664

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=93.38  E-value=0.061  Score=44.47  Aligned_cols=27  Identities=30%  Similarity=0.487  Sum_probs=22.8

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..+.-+.|.|++|+|||+|+..+++..
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            445779999999999999999887654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=93.35  E-value=0.057  Score=47.26  Aligned_cols=25  Identities=24%  Similarity=0.290  Sum_probs=21.1

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.+++|.|++|+||||++..+...
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999877653

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.33  E-value=0.089  Score=45.89  Aligned_cols=28  Identities=18%  Similarity=0.170  Sum_probs=23.9

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      +|+-..|.|++|+||||++.+++.+...
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~   29 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKL   29 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5777889999999999999888887643

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=93.32  E-value=0.046  Score=46.73  Aligned_cols=23  Identities=30%  Similarity=0.281  Sum_probs=20.1

Q ss_pred             CceeEeecCCCCcHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.++|+|++|+|||||+..+..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            56789999999999999987753

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=93.32  E-value=0.58  Score=46.71  Aligned_cols=29  Identities=31%  Similarity=0.140  Sum_probs=24.8

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .++..+.+.|++|+||||++..++...++
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~  123 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKK  123 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            36788999999999999999998876654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.28  E-value=0.06  Score=49.22  Aligned_cols=29  Identities=24%  Similarity=0.338  Sum_probs=24.4

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+ +.++|+|++|+|||||+.-+.
T Consensus        17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~   45 (240)
T 2onk_A           17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIA   45 (240)
T ss_dssp             EEEEEECS-SEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEECC-EEEEEECCCCCCHHHHHHHHh
Confidence            44467889 999999999999999997544

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=93.27  E-value=0.03  Score=52.77  Aligned_cols=31  Identities=35%  Similarity=0.483  Sum_probs=28.6

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      ||-|+.+-+|+..+|+|++|+|||||+..+.
T Consensus       156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          156 IDELVDYLEGFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence            6788899999999999999999999998776

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=93.26  E-value=0.45  Score=45.46  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -++|+|++|+|||+|+..+++.
T Consensus        86 ~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999877654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=93.25  E-value=0.045  Score=50.74  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=20.8

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+.+|  ++|+|++|+|||+|+..++.
T Consensus        42 ~~~~G--vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           42 VTPAG--VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             CCCSE--EEEESSTTSCHHHHHHHHHH
T ss_pred             CCCCe--EEEECCCCCcHHHHHHHHHH
Confidence            35566  99999999999999986654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=93.24  E-value=0.049  Score=45.95  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +|.|++|+|.+|+|||+|+..+..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            678999999999999999987764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.22  E-value=0.042  Score=52.77  Aligned_cols=28  Identities=25%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             eccc--CceeEeecCCCCcHHHHHHHHHHH
Q 018957          222 PYQR--GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       222 Pigk--GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+.+  |++.+|+|++|+|||||+..+...
T Consensus       164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          164 EARPFFAKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             TTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             HHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence            3566  999999999999999999876643

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=93.16  E-value=0.054  Score=48.65  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      ++..++|+|++|+|||||+..+..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987763

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.05  E-value=0.12  Score=44.46  Aligned_cols=25  Identities=40%  Similarity=0.579  Sum_probs=21.4

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      +-+.|.|++|+|||+|+..+.+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6799999999999999988776553

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.81  E-value=0.072  Score=54.39  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=26.2

Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +++.+..+.+|+.++|+|++|+|||||+.-+.
T Consensus        37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~   68 (538)
T 1yqt_A           37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILA   68 (538)
T ss_dssp             EEECCCCCCTTSEEEEECCTTSSHHHHHHHHH
T ss_pred             cccCcCcCCCCCEEEEECCCCCCHHHHHHHHh
Confidence            44444468999999999999999999987543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=92.80  E-value=0.14  Score=44.10  Aligned_cols=28  Identities=21%  Similarity=0.182  Sum_probs=23.9

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..+|-.+.|.|++|+||||++..+....
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999887643

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=92.74  E-value=0.059  Score=49.30  Aligned_cols=26  Identities=35%  Similarity=0.510  Sum_probs=21.2

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+.+|  ++|+|++|+|||+|+..+...
T Consensus        71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           71 RIPKG--VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             CCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCe--EEEECCCcChHHHHHHHHHHH
Confidence            34566  999999999999999876643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=92.72  E-value=0.08  Score=44.65  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=21.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +|..+.|.|++|+||||++..+....
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999887643

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=92.65  E-value=0.86  Score=40.69  Aligned_cols=55  Identities=22%  Similarity=0.167  Sum_probs=35.0

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc-chhHHHHHHHHHHcC
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER-TREGNDLYREMIESG  281 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER-~rEv~~~~~e~~~~~  281 (348)
                      .+|--+.|-|+.|+||||++..+......  .++.|+ .+-|. +.+.-+.++++...+
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~--~~~~v~-~~~~p~~~~~g~~i~~~l~~~   59 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE--RGIEVQ-LTREPGGTPLAERIRELLLAP   59 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEE-EEESSCSSHHHHHHHHHHHSC
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCcc-cccCCCCCHHHHHHHHHHhcC
Confidence            36788999999999999999888765432  234443 23333 334445566665543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=92.65  E-value=0.16  Score=46.03  Aligned_cols=25  Identities=24%  Similarity=0.177  Sum_probs=20.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ....++|.|++|+|||+|+..+++.
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3456899999999999999877654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=92.63  E-value=0.071  Score=48.53  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=21.8

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .+|..++|.|++|+|||||+..+.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999998776

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=92.63  E-value=0.79  Score=41.35  Aligned_cols=25  Identities=32%  Similarity=0.457  Sum_probs=20.9

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+.-++|.|++|+|||+|+..+++.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4556999999999999999877654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=92.61  E-value=0.22  Score=46.85  Aligned_cols=28  Identities=32%  Similarity=0.413  Sum_probs=24.7

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .+|+.++|.|+.|+||||++..++...+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999998886654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.60  E-value=0.18  Score=50.44  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=18.4

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++++||+|||||.|+..++..
T Consensus       218 vLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          218 ALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEECcCCCCHHHHHHHHHHH
Confidence            899999999999999877654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.60  E-value=0.19  Score=50.10  Aligned_cols=21  Identities=38%  Similarity=0.714  Sum_probs=18.6

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++++||+|||||.|+..+++.
T Consensus       209 iLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          209 VLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEESCTTTTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999877654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=92.57  E-value=0.081  Score=44.82  Aligned_cols=26  Identities=42%  Similarity=0.356  Sum_probs=22.5

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .++..+.|.|++|+||||++..+...
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            46788999999999999999887654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=92.56  E-value=0.072  Score=44.21  Aligned_cols=27  Identities=30%  Similarity=0.459  Sum_probs=22.5

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ....-+.|.|++|+|||+|+..+++..
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            346678999999999999999887654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=92.55  E-value=0.12  Score=50.10  Aligned_cols=28  Identities=29%  Similarity=0.449  Sum_probs=25.0

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.+|+.++|.|++|+|||||+..++...
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            6789999999999999999998887654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=92.55  E-value=0.062  Score=53.98  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=24.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|++++|+|++|+|||||+.-++.
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            335567999999999999999999975543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=92.48  E-value=0.084  Score=54.93  Aligned_cols=32  Identities=28%  Similarity=0.464  Sum_probs=26.5

Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .++.+..+.+|+.++|+|++|+|||||+.-+.
T Consensus        93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~  124 (608)
T 3j16_B           93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILA  124 (608)
T ss_dssp             EEECCCCCCTTSEEEEECCTTSSHHHHHHHHH
T ss_pred             eecCCCCCCCCCEEEEECCCCChHHHHHHHHh
Confidence            35555568899999999999999999987543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=92.42  E-value=0.16  Score=43.68  Aligned_cols=28  Identities=29%  Similarity=0.344  Sum_probs=23.5

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..+|-.+.|.|++|+||||++..+....
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568889999999999999999887653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=92.40  E-value=0.041  Score=51.68  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=27.6

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      ||-++.+.+|+..+|+|++|+|||||+..+.
T Consensus       160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~  190 (301)
T 1u0l_A          160 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN  190 (301)
T ss_dssp             HHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred             HHHHHHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence            6778888999999999999999999987654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=92.35  E-value=0.2  Score=41.29  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=19.8

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+.-+.|.|++|||||+++..+..
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Confidence            456689999999999999976644

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=92.32  E-value=0.092  Score=43.49  Aligned_cols=22  Identities=23%  Similarity=0.080  Sum_probs=19.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+.|.|++|+||||++..+...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999887654

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.32  E-value=0.28  Score=48.68  Aligned_cols=58  Identities=21%  Similarity=0.379  Sum_probs=36.0

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEE---------eeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEe
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG---------VGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG  299 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~---------IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~  299 (348)
                      ++++||+|||||.|+..++...     +..+|..         +||..+.+.++...-.+.           ..+++|+-
T Consensus       185 vLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~-----------aP~IIFiD  248 (405)
T 4b4t_J          185 VILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH-----------APSIIFMD  248 (405)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT-----------CSEEEEEE
T ss_pred             eEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHHhhccccchHHHHHHHHHHHHHHh-----------CCceEeee
Confidence            8999999999999998776542     3333332         355555555544443332           35777765


Q ss_pred             cCC
Q 018957          300 QMN  302 (348)
Q Consensus       300 tsd  302 (348)
                      -.|
T Consensus       249 EiD  251 (405)
T 4b4t_J          249 EID  251 (405)
T ss_dssp             SSS
T ss_pred             cch
Confidence            544

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=92.31  E-value=0.19  Score=42.80  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=23.8

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..+|..+.|.|.+|+||||++..+....
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4478889999999999999998887654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=92.23  E-value=0.72  Score=43.10  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=19.4

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .-++|+|++|+|||+|+..+++.
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999877653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=92.22  E-value=1.3  Score=43.99  Aligned_cols=28  Identities=25%  Similarity=0.105  Sum_probs=24.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      +|+.+.|.|..|+||||++..++...+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~  124 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG  124 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            7889999999999999999988876654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.20  E-value=0.084  Score=45.27  Aligned_cols=22  Identities=41%  Similarity=0.700  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |++|+|++|+|||||+..++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999887653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=92.16  E-value=0.17  Score=49.01  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=23.9

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..+|+.++|.|++|+|||||+..++...
T Consensus       120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             HCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            5678899999999999999998776544

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=92.07  E-value=0.14  Score=48.06  Aligned_cols=27  Identities=22%  Similarity=0.244  Sum_probs=22.4

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..+.-+.|.|++|+|||+|+..+++..
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345679999999999999998887654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.04  E-value=0.11  Score=42.34  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|+|||+|+..+..+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999888754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=91.99  E-value=0.11  Score=44.12  Aligned_cols=25  Identities=40%  Similarity=0.504  Sum_probs=22.1

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|..++|.|++|+||||++..+...
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999877654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=91.97  E-value=0.094  Score=53.71  Aligned_cols=30  Identities=20%  Similarity=0.379  Sum_probs=25.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.+.+|++++|.|++|+|||||+.-+..
T Consensus       362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          362 VSFSIPQGKTVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             ceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence            446789999999999999999999976543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=91.97  E-value=0.09  Score=45.05  Aligned_cols=22  Identities=41%  Similarity=0.700  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +++|+|++|+|||||+..++.+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999877654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=91.97  E-value=0.11  Score=44.48  Aligned_cols=26  Identities=27%  Similarity=0.284  Sum_probs=22.6

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +|..+.|.|++|+||||++..+....
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l   28 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWI   28 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999887644

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=91.96  E-value=0.1  Score=45.39  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +++|.|++|+||||++..+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999877653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=91.92  E-value=0.098  Score=43.47  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=19.4

Q ss_pred             ceeEeecCCCCcHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -+++|+|++|+|||+|+..+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3789999999999999988764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=91.91  E-value=0.12  Score=43.84  Aligned_cols=24  Identities=33%  Similarity=0.257  Sum_probs=20.8

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +..+.|.|++|+||||++..+...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999999988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.90  E-value=0.095  Score=53.50  Aligned_cols=26  Identities=35%  Similarity=0.669  Sum_probs=23.0

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .+.+|+.++|+|+.|+|||||+.-+.
T Consensus       308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~  333 (538)
T 1yqt_A          308 EIKKGEVIGIVGPNGIGKTTFVKMLA  333 (538)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999999997554

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=91.86  E-value=0.11  Score=45.37  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=18.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++|.|++|+||||++..+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=91.86  E-value=0.096  Score=53.65  Aligned_cols=30  Identities=20%  Similarity=0.397  Sum_probs=25.6

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|++++|.|++|+|||||+.-+.
T Consensus       361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~  390 (582)
T 3b60_A          361 NINLKIPAGKTVALVGRSGSGKSTIASLIT  390 (582)
T ss_dssp             EEEEEECTTCEEEEEECTTSSHHHHHHHHT
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344678999999999999999999997554

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.84  E-value=0.31  Score=48.72  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=18.5

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++++||+|||||.|+..+++.
T Consensus       218 vLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          218 VLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999877654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=91.79  E-value=0.11  Score=42.00  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|+|||+|+..++.+
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999888753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.77  E-value=0.11  Score=54.03  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=26.4

Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +++.+..+.+|+.++|+|++|+|||||+.-+.
T Consensus       107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~  138 (607)
T 3bk7_A          107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA  138 (607)
T ss_dssp             EEECCCCCCTTSEEEEECCTTSSHHHHHHHHT
T ss_pred             eeCCCCCCCCCCEEEEECCCCChHHHHHHHHh
Confidence            45555568999999999999999999997543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=91.73  E-value=0.094  Score=42.40  Aligned_cols=22  Identities=32%  Similarity=0.733  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=91.73  E-value=0.085  Score=44.64  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.|+|++|+|||+|+..++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999987764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=91.64  E-value=0.13  Score=43.07  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |.-+.|.|.+|+||||++..+...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            567899999999999999887653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=91.64  E-value=0.11  Score=42.67  Aligned_cols=21  Identities=38%  Similarity=0.594  Sum_probs=19.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.|+|++|+|||+|+..+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            789999999999999988764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=91.64  E-value=0.38  Score=40.44  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .++|.|++|+||||++..+....
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999998887643

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=91.60  E-value=0.059  Score=52.64  Aligned_cols=31  Identities=29%  Similarity=0.375  Sum_probs=25.7

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +|-|....+|+.++|+|++|+|||||+..+.
T Consensus       206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~  236 (358)
T 2rcn_A          206 LKPLEEALTGRISIFAGQSGVGKSSLLNALL  236 (358)
T ss_dssp             HHHHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence            3455566799999999999999999997665

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=91.59  E-value=0.99  Score=40.92  Aligned_cols=58  Identities=21%  Similarity=0.214  Sum_probs=33.2

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhc--CCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAH--GGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~--~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      .+|--+-|-|+.|+||||++..+.......+  .++.|+..--.++.+.-+.++++...+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~   82 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ   82 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC
Confidence            5788899999999999999988876543220  133333222223445555566665543

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=91.56  E-value=0.13  Score=43.02  Aligned_cols=23  Identities=35%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |-++|.|++|+||||++..+...
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999877653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=91.54  E-value=0.12  Score=41.93  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=91.53  E-value=0.069  Score=51.57  Aligned_cols=28  Identities=32%  Similarity=0.387  Sum_probs=24.9

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.+.+|+.++|.|++|+|||||+.-++.
T Consensus       170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          170 RAVQLERVIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             HHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred             HHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence            4678999999999999999999987664

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=91.48  E-value=0.22  Score=44.76  Aligned_cols=29  Identities=28%  Similarity=0.349  Sum_probs=25.1

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.+|..+.|.|++|+||||++..+....
T Consensus        22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           22 SNAMSAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46689999999999999999998887654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.47  E-value=0.6  Score=46.81  Aligned_cols=21  Identities=38%  Similarity=0.684  Sum_probs=18.6

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++++||+|||||.|+..++..
T Consensus       219 vLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          219 VILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             EEEESSTTTTHHHHHHHHHHH
T ss_pred             CceECCCCchHHHHHHHHHHH
Confidence            899999999999999877654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=91.45  E-value=0.2  Score=47.72  Aligned_cols=31  Identities=16%  Similarity=0.239  Sum_probs=26.2

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      +...+|..++|.|.+|+|||||+..++....
T Consensus        51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3468999999999999999999988875543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=91.45  E-value=0.14  Score=43.88  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +|-.+.|.|++|+||||++..+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            678899999999999999987764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=91.45  E-value=0.14  Score=50.65  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=38.0

Q ss_pred             cccccccCCCcchhhcccccceeecceeeeeceeecccC-ceeEeecCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEeec
Q 018957          188 EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNVAKAHG-GFSVFAGVGE  265 (348)
Q Consensus       188 ~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkG-Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~-~~~V~~~IGE  265 (348)
                      ..+.|+.-...++.++..+...+..          +-.+ +-+.|.|++|+|||+++..++........ .+.+.+..+.
T Consensus        16 ~~~~p~~~~~Ln~~Q~~av~~~~~~----------i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~   85 (459)
T 3upu_A           16 PRGSHMTFDDLTEGQKNAFNIVMKA----------IKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHA   85 (459)
T ss_dssp             -----CCSSCCCHHHHHHHHHHHHH----------HHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHH
T ss_pred             cccCCCccccCCHHHHHHHHHHHHH----------HhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHH
Confidence            3455665555666666554433221          1112 28899999999999999988876543322 3445544443

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=91.44  E-value=0.14  Score=43.22  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++-.+.|.|++|+||||++..+...
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3557899999999999999877653

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=91.43  E-value=0.5  Score=43.87  Aligned_cols=23  Identities=35%  Similarity=0.384  Sum_probs=19.5

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .-++|.|++|||||+|+..+.+.
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999887553

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=91.40  E-value=0.24  Score=47.59  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.+++|.|.+|+|||||+..++...
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            7789999999999999998887643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=91.36  E-value=0.11  Score=42.70  Aligned_cols=19  Identities=32%  Similarity=0.315  Sum_probs=17.2

Q ss_pred             eeEeecCCCCcHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~i  246 (348)
                      .+.|.|++|+||||++..+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999877

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=91.36  E-value=0.1  Score=42.05  Aligned_cols=22  Identities=45%  Similarity=0.813  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|.+|+|||+|+..+..+
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999888754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=91.35  E-value=0.11  Score=42.03  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|.+|+|||+|+..+..+
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999888754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=91.35  E-value=0.11  Score=53.28  Aligned_cols=29  Identities=24%  Similarity=0.418  Sum_probs=24.9

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|++++|.|++|+|||||+.-+.
T Consensus       360 isl~i~~G~~~~ivG~sGsGKSTll~~l~  388 (578)
T 4a82_A          360 INLSIEKGETVAFVGMSGGGKSTLINLIP  388 (578)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred             eEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence            34689999999999999999999986443

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.34  E-value=0.1  Score=42.57  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|+|||+|+..+..+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.34  E-value=0.11  Score=42.23  Aligned_cols=22  Identities=36%  Similarity=0.758  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|+|||+|+..+..+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999888754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=91.33  E-value=0.14  Score=43.55  Aligned_cols=27  Identities=22%  Similarity=0.418  Sum_probs=22.8

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.++-.+.|.|++|+||||++..+...
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            346778999999999999999887653

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=91.22  E-value=0.41  Score=43.94  Aligned_cols=68  Identities=18%  Similarity=0.196  Sum_probs=38.9

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPG  306 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~  306 (348)
                      .-+.|.|++|+|||+|+..+.+.. .  .. .+++-+.. .....++...|.+.         ..+..++|.--.+.-+.
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~-~--~~-~~~~~~~~-~~~~~~l~~~l~~~---------~~~~~~l~lDEi~~l~~  104 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHEL-G--VN-LRVTSGPA-IEKPGDLAAILANS---------LEEGDILFIDEIHRLSR  104 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHH-T--CC-EEEECTTT-CCSHHHHHHHHTTT---------CCTTCEEEETTTTSCCH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh-C--CC-EEEEeccc-cCChHHHHHHHHHh---------ccCCCEEEEECCccccc
Confidence            568999999999999998776543 1  12 22332222 22233444433320         12457888877766554


Q ss_pred             HH
Q 018957          307 AR  308 (348)
Q Consensus       307 ~r  308 (348)
                      ..
T Consensus       105 ~~  106 (324)
T 1hqc_A          105 QA  106 (324)
T ss_dssp             HH
T ss_pred             ch
Confidence            33

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=91.22  E-value=1.1  Score=42.88  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=20.1

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.-++|.|++|+|||+|+..++..
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999877543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=91.22  E-value=0.13  Score=43.11  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=19.5

Q ss_pred             ceeEeecCCCCcHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -|++|+|++|+|||+|+..+..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3789999999999999988764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=91.22  E-value=0.66  Score=43.70  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .-++|+|++|+|||+|+..+++.
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            45899999999999999877654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=91.21  E-value=0.12  Score=44.54  Aligned_cols=21  Identities=33%  Similarity=0.599  Sum_probs=18.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++|.|++|+||||++..+..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999987654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=91.13  E-value=0.15  Score=43.44  Aligned_cols=22  Identities=36%  Similarity=0.721  Sum_probs=19.3

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+.|.|++|+||||++..+...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999887654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=91.13  E-value=0.11  Score=53.18  Aligned_cols=27  Identities=33%  Similarity=0.610  Sum_probs=23.8

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.++|+|++|+|||||+..+.
T Consensus       289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~  315 (538)
T 3ozx_A          289 GEAKEGEIIGILGPNGIGKTTFARILV  315 (538)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred             ceECCCCEEEEECCCCCCHHHHHHHHh
Confidence            467899999999999999999997554

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.13  E-value=0.14  Score=41.47  Aligned_cols=22  Identities=32%  Similarity=0.732  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=91.11  E-value=0.14  Score=45.29  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=20.6

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      ..++..+.|.|++|+||||++..+..
T Consensus         4 ~~~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            4 SARLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             ---CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHHH
Confidence            34667899999999999999987764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=91.11  E-value=0.13  Score=53.49  Aligned_cols=26  Identities=35%  Similarity=0.669  Sum_probs=23.0

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .+.+|+.++|+|++|+|||||+.-+.
T Consensus       378 ~v~~Gei~~i~G~NGsGKSTLlk~l~  403 (607)
T 3bk7_A          378 EIRKGEVIGIVGPNGIGKTTFVKMLA  403 (607)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999999997554

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=91.10  E-value=0.15  Score=43.08  Aligned_cols=26  Identities=31%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .++..+.|.|.+|+||||++..+...
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35678999999999999999887654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.07  E-value=0.11  Score=53.40  Aligned_cols=29  Identities=31%  Similarity=0.523  Sum_probs=25.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|++++|.|++|+|||||+.-+.
T Consensus       374 isl~i~~G~~~~ivG~sGsGKSTll~~l~  402 (598)
T 3qf4_B          374 ITFHIKPGQKVALVGPTGSGKTTIVNLLM  402 (598)
T ss_dssp             EEEECCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            34679999999999999999999987543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.07  E-value=0.14  Score=41.91  Aligned_cols=20  Identities=40%  Similarity=0.537  Sum_probs=18.4

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      |+.|+|++|+|||+|+..+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999998875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=91.04  E-value=0.15  Score=43.02  Aligned_cols=29  Identities=21%  Similarity=0.545  Sum_probs=23.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.-+.+.+| -.+|+|+.|+|||+|+.-+.
T Consensus        19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~   47 (182)
T 3kta_A           19 KVVIPFSKG-FTAIVGANGSGKSNIGDAIL   47 (182)
T ss_dssp             CEEEECCSS-EEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEecCCC-cEEEECCCCCCHHHHHHHHH
Confidence            344566677 88999999999999986553

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=91.01  E-value=0.28  Score=44.59  Aligned_cols=29  Identities=17%  Similarity=0.101  Sum_probs=24.2

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .+|+-+.|.|+.|+||||++.+++.+...
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~   38 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEY   38 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            56888888899999999999999988754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=90.97  E-value=0.15  Score=41.34  Aligned_cols=22  Identities=32%  Similarity=0.703  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..++.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888753

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=90.96  E-value=1.2  Score=44.18  Aligned_cols=29  Identities=21%  Similarity=0.168  Sum_probs=23.8

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhh
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKA  253 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~  253 (348)
                      +...+.+.|..|+||||++..++...++.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~  127 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK  127 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            34578889999999999999998776543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=90.93  E-value=0.13  Score=52.88  Aligned_cols=29  Identities=21%  Similarity=0.389  Sum_probs=25.0

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|++++|.|++|+|||||+.-+.
T Consensus       362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~  390 (587)
T 3qf4_A          362 VNFSVKPGSLVAVLGETGSGKSTLMNLIP  390 (587)
T ss_dssp             EEEEECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            33689999999999999999999986443

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=90.91  E-value=1.2  Score=40.58  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +...+.|.|++|+|||+++..+++..
T Consensus        45 ~~~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           45 SMPHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            33359999999999999998887654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=90.91  E-value=0.21  Score=49.58  Aligned_cols=28  Identities=21%  Similarity=0.316  Sum_probs=24.2

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..+|+-++|.|+.|+|||||+..++...
T Consensus       164 ~~~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          164 KRPHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            3689999999999999999998777544

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=90.86  E-value=0.15  Score=47.92  Aligned_cols=28  Identities=21%  Similarity=0.221  Sum_probs=23.3

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      -.++..++|.|++|+|||||+..+....
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999998776543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=90.82  E-value=0.13  Score=42.42  Aligned_cols=22  Identities=41%  Similarity=0.718  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=90.82  E-value=0.13  Score=43.86  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..++.+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999888764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=90.82  E-value=0.086  Score=48.64  Aligned_cols=28  Identities=25%  Similarity=0.277  Sum_probs=23.8

Q ss_pred             eeccc---CceeEeecCCCCcHHHHHHHHHH
Q 018957          221 APYQR---GGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       221 ~Pigk---GQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.+.+   |..+.|.|++|+||||++..+..
T Consensus        40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             HTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            34555   99999999999999999987765

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=90.78  E-value=0.15  Score=41.52  Aligned_cols=22  Identities=41%  Similarity=0.816  Sum_probs=19.4

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999888743

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=90.78  E-value=0.12  Score=53.80  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=22.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLI  243 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~  243 (348)
                      .=+.+.+|+.++|+|++|+|||||+
T Consensus        37 vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           37 IDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             EEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             cEEEECCCCEEEEECCCCCCHHHHh
Confidence            3468999999999999999999996

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=90.77  E-value=0.17  Score=44.31  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.6

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|-++.|.|++|+||||++..+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999887654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=90.76  E-value=0.16  Score=41.83  Aligned_cols=22  Identities=41%  Similarity=0.764  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7999999999999999888754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.75  E-value=0.15  Score=41.43  Aligned_cols=23  Identities=30%  Similarity=0.806  Sum_probs=20.0

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =|+.++|.+|+|||+|+..+..+
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            37999999999999999887753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=90.71  E-value=0.29  Score=46.09  Aligned_cols=27  Identities=22%  Similarity=0.545  Sum_probs=23.0

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .++-+.|.|++|+|||+|+..+++...
T Consensus       151 ~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          151 EQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            368899999999999999988776554

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=90.71  E-value=0.12  Score=44.05  Aligned_cols=25  Identities=36%  Similarity=0.509  Sum_probs=20.2

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+.-|+.|+|++|+|||+|+..+..
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3455999999999999999988875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=90.70  E-value=0.16  Score=42.98  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=20.0

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .++.|.|++|+||||++..+...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999887654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=90.68  E-value=0.17  Score=41.22  Aligned_cols=22  Identities=32%  Similarity=0.770  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..++.+
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=90.66  E-value=0.16  Score=43.28  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=22.0

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .++..++|.|++|+||||++..+...
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999877654

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=90.65  E-value=0.41  Score=49.49  Aligned_cols=50  Identities=20%  Similarity=0.213  Sum_probs=34.5

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      ..|.||||||||+.+.++|.+..+...  .| ..|.....-+.++.+.+.+.+
T Consensus       208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~--~I-Lv~a~TN~AvD~i~erL~~~~  257 (646)
T 4b3f_X          208 AIIHGPPGTGKTTTVVEIILQAVKQGL--KV-LCCAPSNIAVDNLVERLALCK  257 (646)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHTTC--CE-EEEESSHHHHHHHHHHHHHTT
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhCCC--eE-EEEcCchHHHHHHHHHHHhcC
Confidence            589999999999999999887655322  22 334555666666666665543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=90.64  E-value=0.096  Score=46.75  Aligned_cols=26  Identities=19%  Similarity=0.160  Sum_probs=22.6

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +..+|.-++|.|+.|+||||++..+.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~   41 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFE   41 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999987554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=90.60  E-value=0.17  Score=43.11  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      -+.|.|++|+|||+|+..+++..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999887654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=90.58  E-value=0.14  Score=41.80  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-=|+.|+|++|+|||+|+..+..+
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4458999999999999999888653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=90.56  E-value=0.17  Score=42.04  Aligned_cols=22  Identities=32%  Similarity=0.573  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |++|+|++|+|||+|+..+..+
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999887753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=90.55  E-value=0.14  Score=41.70  Aligned_cols=20  Identities=40%  Similarity=0.551  Sum_probs=18.2

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      |+.|+|++|+|||+|+..+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            78999999999999998775

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=90.54  E-value=0.14  Score=42.41  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|.+|+|||+|+..+..+
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=90.51  E-value=0.16  Score=42.32  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+.|.|++|+||||++..+..
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            478999999999999988765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=90.51  E-value=0.16  Score=43.97  Aligned_cols=20  Identities=40%  Similarity=0.635  Sum_probs=17.6

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      .++|.|++|+||||++..+.
T Consensus         4 ~i~l~G~~GsGKST~~~~La   23 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFT   23 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999998664

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=90.49  E-value=0.8  Score=43.14  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..++|+|++|+|||||+.-++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            67899999999999999866653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=90.48  E-value=0.11  Score=43.16  Aligned_cols=22  Identities=32%  Similarity=0.699  Sum_probs=20.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|+|||+|+..++.+
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7999999999999999988764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=90.46  E-value=1.8  Score=39.47  Aligned_cols=52  Identities=17%  Similarity=0.250  Sum_probs=33.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEE-EEEEeec-cchhHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGE-RTREGNDLYREMIE  279 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~-V~~~IGE-R~rEv~~~~~e~~~  279 (348)
                      +|.-+.|-|++|+||||++..+.......  .+. +.. .-| .+.+.-+.++++..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~-~rep~~t~~g~~ir~~l~   79 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITR-TREPGGTLLAEKLRALVK   79 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEE-EESSCSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeee-ecCCCCCHHHHHHHHHHh
Confidence            67889999999999999998887654322  333 222 223 34455555555543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=90.46  E-value=0.16  Score=55.67  Aligned_cols=29  Identities=24%  Similarity=0.469  Sum_probs=25.9

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|++++|+|++|+|||||+..+.
T Consensus       454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~La  482 (986)
T 2iw3_A          454 TQLRLKRARRYGICGPNGCGKSTLMRAIA  482 (986)
T ss_dssp             EEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            45689999999999999999999998665

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=90.45  E-value=0.2  Score=43.23  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .++-.+.|.|++|+||||++..+...
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999877653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=90.44  E-value=0.2  Score=43.05  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +...++|.|++|+||||++..+..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445689999999999999987764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=90.43  E-value=0.16  Score=41.72  Aligned_cols=23  Identities=39%  Similarity=0.775  Sum_probs=20.1

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            37899999999999999888754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=90.40  E-value=0.14  Score=42.23  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999888753

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=90.39  E-value=0.14  Score=43.07  Aligned_cols=24  Identities=38%  Similarity=0.325  Sum_probs=16.5

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      ++..+.|.|.+|+||||++..+..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            677899999999999999987764

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=90.37  E-value=0.33  Score=44.59  Aligned_cols=37  Identities=24%  Similarity=0.227  Sum_probs=25.4

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE  265 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE  265 (348)
                      ++.+.|.+|||||+++..++...++. +--++++-+..
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~   44 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVET   44 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence            46778999999999999888776543 22233444444

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=90.35  E-value=0.19  Score=43.40  Aligned_cols=23  Identities=26%  Similarity=0.422  Sum_probs=19.8

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -.+.|.|++|+||||++..+...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999887654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=90.34  E-value=0.18  Score=42.47  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =+++|+|++|+|||+|+..+..+
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            48999999999999999887753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=90.32  E-value=0.15  Score=42.37  Aligned_cols=22  Identities=45%  Similarity=0.801  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..++.+
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999888754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=90.31  E-value=0.14  Score=50.27  Aligned_cols=28  Identities=21%  Similarity=0.154  Sum_probs=24.9

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.+.+|+.++|.|++|+|||||+..++.
T Consensus       164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          164 YNIPKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            4688999999999999999999987764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=90.31  E-value=0.15  Score=43.33  Aligned_cols=22  Identities=23%  Similarity=0.671  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..++.+
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            7899999999999999888764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.30  E-value=0.18  Score=42.69  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |+.|+|.+|+|||+|+..+..+.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            78999999999999998887653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=90.24  E-value=1  Score=43.05  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=24.1

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .+.-+++|.|.+|+|||||+..++...+.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~  105 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIE  105 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            35568999999999999999998876543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=90.23  E-value=0.19  Score=41.21  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=90.21  E-value=0.18  Score=42.49  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.|.|++|+||||++..+...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999888654

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=90.20  E-value=0.18  Score=42.34  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.|.|++|+||||++..+....
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999887654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=90.19  E-value=0.16  Score=42.37  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=19.4

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..++.+
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            6899999999999999887753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=90.19  E-value=0.073  Score=50.90  Aligned_cols=28  Identities=29%  Similarity=0.494  Sum_probs=24.3

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.+.+|+.++|.|++|+|||||+.-++.
T Consensus       166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g  193 (330)
T 2pt7_A          166 DGIAIGKNVIVCGGTGSGKTTYIKSIME  193 (330)
T ss_dssp             HHHHHTCCEEEEESTTSCHHHHHHHGGG
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567999999999999999999976654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=90.18  E-value=0.16  Score=42.71  Aligned_cols=22  Identities=45%  Similarity=0.813  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|.+|+|||+|+..++.+
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=90.15  E-value=0.16  Score=42.03  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=19.9

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =|+.|+|++|+|||+|+..+..+
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999877653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=90.13  E-value=0.19  Score=41.83  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=20.3

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =|++|+|.+|+|||+|+..++.+
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            37999999999999999888764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=90.13  E-value=0.16  Score=42.27  Aligned_cols=22  Identities=32%  Similarity=0.687  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999888754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=90.08  E-value=0.16  Score=41.95  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            7899999999999999887753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=90.07  E-value=0.2  Score=44.02  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=21.5

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|-++.|.|++|+||||++..+...
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999877653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=90.04  E-value=2.1  Score=43.52  Aligned_cols=29  Identities=24%  Similarity=0.244  Sum_probs=23.1

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .+...+.|.|.+|+||||++..++...++
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~  127 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR  127 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            44568999999999999999999876544

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=90.04  E-value=0.15  Score=42.88  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=89.97  E-value=0.18  Score=41.40  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7999999999999999888743

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=89.96  E-value=0.21  Score=45.59  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=20.5

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.-++|.|++|+|||+|+..++..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            567899999999999999877653

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.96  E-value=0.55  Score=47.48  Aligned_cols=22  Identities=36%  Similarity=0.526  Sum_probs=18.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -++++||+|||||.|+..++..
T Consensus       245 GILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          245 GILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             EEEECSCTTSSHHHHHHHHHHH
T ss_pred             ceEeeCCCCCcHHHHHHHHHhc
Confidence            3899999999999999877654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=89.91  E-value=0.16  Score=42.34  Aligned_cols=22  Identities=36%  Similarity=0.679  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=89.91  E-value=0.21  Score=42.18  Aligned_cols=22  Identities=45%  Similarity=0.702  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |++|+|.+|+|||+|+..+..+
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999887754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=89.90  E-value=0.22  Score=44.98  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++-++.|+|++|+||||++..+...
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4558999999999999999887653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=89.89  E-value=0.21  Score=41.28  Aligned_cols=22  Identities=32%  Similarity=0.771  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=89.86  E-value=0.16  Score=52.86  Aligned_cols=28  Identities=25%  Similarity=0.395  Sum_probs=24.4

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      .=+.+.+|+.++|+|++|+|||||+..+
T Consensus       341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          341 VSVKIPLGTFVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             EEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred             ceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence            3468999999999999999999998643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=89.86  E-value=0.22  Score=42.71  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=19.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.|+|++|||||+|+..++.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            799999999999999988874

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=89.83  E-value=0.17  Score=47.02  Aligned_cols=21  Identities=29%  Similarity=0.659  Sum_probs=17.8

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++|.|++|||||+|+..+++.
T Consensus        39 lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           39 LGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             EEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567799999999999877754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.81  E-value=0.18  Score=41.67  Aligned_cols=22  Identities=41%  Similarity=0.732  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999887654

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=89.77  E-value=0.17  Score=45.23  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=20.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            7999999999999999988754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=89.76  E-value=0.2  Score=41.26  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.0

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.-++.|+|++|+|||+|+..+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            556899999999999999988764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=89.75  E-value=0.22  Score=44.34  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.6

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+|.+++|.|++|+||||++..+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999887664

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=89.69  E-value=0.18  Score=42.05  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7999999999999999887654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=89.69  E-value=0.18  Score=42.71  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999887754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=89.66  E-value=0.17  Score=42.04  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=89.66  E-value=0.21  Score=44.43  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .-++|.|++|+|||+|+..+++.
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            44899999999999999877654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.65  E-value=0.16  Score=50.76  Aligned_cols=27  Identities=30%  Similarity=0.395  Sum_probs=23.1

Q ss_pred             eecccCce--eEeecCCCCcHHHHHHHHH
Q 018957          221 APYQRGGK--IGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       221 ~PigkGQr--~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.+.+|+.  ++|+|++|+|||||+..+.
T Consensus        35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~   63 (427)
T 2qag_B           35 KSVSQGFCFNILCVGETGLGKSTLMDTLF   63 (427)
T ss_dssp             HSCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred             eEecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence            56889999  9999999999999997664

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=89.64  E-value=0.22  Score=41.51  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=17.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+ ..+.+
T Consensus        16 ki~vvG~~~~GKssL~-~~l~~   36 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNL-KWIYS   36 (198)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            7899999999999999 45543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=89.61  E-value=0.18  Score=45.75  Aligned_cols=28  Identities=25%  Similarity=0.157  Sum_probs=24.1

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +..++..+.|.|++|+||||++..+...
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            5667889999999999999999887653

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=89.59  E-value=0.24  Score=45.26  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=21.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.-+.|.|++|+|||+|+..+++..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34569999999999999998776654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=89.57  E-value=0.26  Score=43.04  Aligned_cols=28  Identities=39%  Similarity=0.449  Sum_probs=23.8

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.+|..+.|.|.+|+||||++..+....
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999998876543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=89.56  E-value=0.21  Score=44.79  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=18.6

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++|.|++|+|||+|+..+...
T Consensus        48 vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           48 VLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHH
Confidence            899999999999999877653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=89.54  E-value=0.2  Score=41.13  Aligned_cols=21  Identities=33%  Similarity=0.744  Sum_probs=18.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.|+|.+|+|||+|+..++.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999987764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=89.52  E-value=0.22  Score=44.00  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=18.3

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-|.||+|+|||||+..++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999988754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=89.39  E-value=0.2  Score=42.25  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=89.37  E-value=0.24  Score=41.56  Aligned_cols=22  Identities=36%  Similarity=0.777  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..++.+
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999888754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=89.27  E-value=0.23  Score=43.14  Aligned_cols=24  Identities=42%  Similarity=0.695  Sum_probs=21.5

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      -++.|.|.+|+|||+|+..++.+.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=89.27  E-value=0.2  Score=43.10  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -|+.|+|++|+|||+|+..++.+
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999888754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=89.23  E-value=0.24  Score=43.50  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=21.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++..+.|.|++|+||||++..+...
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999887654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=89.17  E-value=0.25  Score=41.96  Aligned_cols=22  Identities=41%  Similarity=0.749  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..++.+
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=89.17  E-value=0.21  Score=41.99  Aligned_cols=24  Identities=42%  Similarity=0.533  Sum_probs=20.6

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      --|+.|+|.+|+|||+|+..++.+
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            347999999999999999888753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=89.17  E-value=0.21  Score=42.28  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7999999999999999888764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=89.13  E-value=0.21  Score=42.23  Aligned_cols=22  Identities=32%  Similarity=0.699  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999887753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=89.11  E-value=0.25  Score=41.54  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999887753

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=89.09  E-value=0.16  Score=57.14  Aligned_cols=30  Identities=27%  Similarity=0.443  Sum_probs=25.8

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=+.|-+||+++|.|++|+|||||+.-+.+
T Consensus      1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1098 LSFSVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             EEEEECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred             eeEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence            447899999999999999999999875543

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=89.08  E-value=0.49  Score=41.21  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=20.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .++|.|.+|+|||||+..++....
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhH
Confidence            578999999999999999887653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=89.06  E-value=0.26  Score=43.92  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=18.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.|+|++|+||+|++..++..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999877653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=89.03  E-value=0.29  Score=43.45  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=21.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.++.|.|++|+||||++..+...
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999887654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=89.03  E-value=0.26  Score=41.62  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=89.03  E-value=0.19  Score=45.16  Aligned_cols=21  Identities=33%  Similarity=0.523  Sum_probs=18.7

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++|.|++|+|||+|+..++..
T Consensus        47 vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999877654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=89.02  E-value=0.28  Score=40.61  Aligned_cols=22  Identities=27%  Similarity=0.202  Sum_probs=19.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.|.|.+|+||||++..+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999877653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.01  E-value=0.26  Score=42.51  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -++.|+|++|+|||+|+..+..+
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999888764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.99  E-value=0.26  Score=41.83  Aligned_cols=39  Identities=31%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             eecceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          210 LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       210 l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.||...++.+.+ -+-=|+.|+|.+|+|||+|+..+..+
T Consensus        13 ~~~~~~~~~~~~~-~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           13 LGTENLYFQSMAK-SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             ---------------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCccccchhccCC-CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            3445555555443 23458999999999999999888754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=88.91  E-value=0.22  Score=42.55  Aligned_cols=22  Identities=50%  Similarity=0.696  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999887653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=88.88  E-value=0.27  Score=41.06  Aligned_cols=22  Identities=36%  Similarity=0.751  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=88.86  E-value=0.27  Score=41.85  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=19.9

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +-..++|.|++|+||||++..+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999987654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=88.82  E-value=0.27  Score=40.85  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=19.3

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+.|.|++|+||||++..+...
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999887653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=88.82  E-value=0.25  Score=41.88  Aligned_cols=22  Identities=32%  Similarity=0.777  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |++|+|++|+|||+|+..+..+
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999888754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=88.76  E-value=0.27  Score=43.01  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.|.|++|+||||++..+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999877653

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=88.71  E-value=0.35  Score=44.13  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=25.6

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE  265 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE  265 (348)
                      +-++|.|++|+|||+++..+...... +..-.+++-+.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~-~~~~~~~~~~~~   85 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTE   85 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHS-CGGGEEEEEGGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcC-CCcceEEeeccc
Confidence            46899999999999999877765422 122244444443

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=88.71  E-value=0.26  Score=41.84  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=19.4

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999887653

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=88.65  E-value=0.26  Score=44.85  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=19.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -+.|.|++|+|||||+..++..
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            3689999999999999988754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=88.60  E-value=0.24  Score=41.80  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=19.8

Q ss_pred             CceeEeecCCCCcHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .=|+.|+|++|+|||+|+..+..
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            34899999999999999987764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=88.50  E-value=0.29  Score=44.38  Aligned_cols=25  Identities=32%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+.-+.|.|++|+|||+++..+++.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999877654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=88.47  E-value=0.23  Score=41.95  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999888754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=88.46  E-value=0.26  Score=41.41  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=19.2

Q ss_pred             ceeEeecCCCCcHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -|+.|+|.+|+|||+|+..+..
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3789999999999999987764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=88.46  E-value=0.16  Score=44.07  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.7

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.++|.|++|+|||||+..++...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999998777654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=88.44  E-value=3.1  Score=38.24  Aligned_cols=67  Identities=15%  Similarity=0.190  Sum_probs=37.2

Q ss_pred             eeEeecC-CCCcHHHHHHHHHHHHHhhcCCEE-EEEEee-ccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCC
Q 018957          228 KIGLFGG-AGVGKTVLIMELINNVAKAHGGFS-VFAGVG-ERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP  304 (348)
Q Consensus       228 r~gIfg~-~GvGKT~L~~~ii~n~a~~~~~~~-V~~~IG-ER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep  304 (348)
                      ...+++| +|+|||+++..+++..     +.. +++-.. .+..++.+.+.++.+..-.      ..++.++++--.+.-
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~------~~~~~vliiDEi~~l  117 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNGSDCKIDFVRGPLTNFASAASF------DGRQKVIVIDEFDRS  117 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEETTTCCHHHHHTHHHHHHHBCCC------SSCEEEEEEESCCCG
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEcccccCHHHHHHHHHHHHhhccc------CCCCeEEEEECCccc
Confidence            5566666 9999999998776532     222 333222 2233344444444443211      124778888777765


Q ss_pred             H
Q 018957          305 P  305 (348)
Q Consensus       305 ~  305 (348)
                      .
T Consensus       118 ~  118 (324)
T 3u61_B          118 G  118 (324)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=88.43  E-value=0.28  Score=41.93  Aligned_cols=25  Identities=32%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-=|+.|+|.+|+|||+|+..++.+
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3348999999999999999888754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=88.40  E-value=0.23  Score=42.83  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=20.8

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-=|+.|+|.+|+|||+|+..++.+
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            3448999999999999999888764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=88.39  E-value=0.23  Score=42.15  Aligned_cols=23  Identities=39%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =|+.|+|++|+|||+|+..+..+
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999888754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.39  E-value=0.23  Score=43.15  Aligned_cols=22  Identities=50%  Similarity=0.741  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..++.+
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999888754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=88.36  E-value=0.23  Score=41.58  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =|+.|+|.+|+|||+|+..+..+
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999888753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.34  E-value=0.28  Score=41.21  Aligned_cols=23  Identities=30%  Similarity=0.751  Sum_probs=20.3

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -|+.|+|.+|+|||+|+..+..+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            48999999999999999888753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=88.33  E-value=0.16  Score=42.21  Aligned_cols=22  Identities=36%  Similarity=0.706  Sum_probs=9.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999887754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=88.33  E-value=2.5  Score=37.70  Aligned_cols=52  Identities=19%  Similarity=0.217  Sum_probs=34.5

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEeec-cchhHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGE-RTREGNDLYREMIE  279 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~IGE-R~rEv~~~~~e~~~  279 (348)
                      +|--|.|-|+.|+||||++..+.......  ++ .| ...-| .+....+.++++..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~~v-~~~rep~~t~~g~~ir~~l~   55 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQL--GIRDM-VFTREPGGTQLAEKLRSLLL   55 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCE-EEEESSCSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCcc-eeeeCCCCCHHHHHHHHHHh
Confidence            57778899999999999998877654322  33 23 23344 34556666777655

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=88.32  E-value=0.18  Score=55.30  Aligned_cols=30  Identities=30%  Similarity=0.449  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|++++|+|++|+|||||+.-+.
T Consensus       691 dVSl~I~~GeivaIiGpNGSGKSTLLklLa  720 (986)
T 2iw3_A          691 DINFQCSLSSRIAVIGPNGAGKSTLINVLT  720 (986)
T ss_dssp             EEEEEEETTCEEEECSCCCHHHHHHHHHHT
T ss_pred             ccEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            445689999999999999999999997554

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=88.29  E-value=0.22  Score=42.76  Aligned_cols=22  Identities=41%  Similarity=0.724  Sum_probs=19.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            7899999999999999888743

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=88.27  E-value=0.26  Score=50.34  Aligned_cols=28  Identities=32%  Similarity=0.533  Sum_probs=23.3

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |-...+|+..+|+|++|+|||||+.-+.
T Consensus        19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~   46 (538)
T 3ozx_A           19 LPTPKNNTILGVLGKNGVGKTTVLKILA   46 (538)
T ss_dssp             CCCCCTTEEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHh
Confidence            3445699999999999999999997543

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=88.27  E-value=0.34  Score=40.67  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..+.|.|++|+||||++..+...
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999877653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=88.26  E-value=0.25  Score=41.30  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+.=|+.|+|++|+|||+|+..+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            3456899999999999999988764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.23  E-value=0.28  Score=41.24  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +-=|+.|+|.+|+|||+|+..++.
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            345899999999999999988874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=88.20  E-value=0.23  Score=42.65  Aligned_cols=20  Identities=40%  Similarity=0.537  Sum_probs=18.2

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      |+.|+|++|+|||+|+..++
T Consensus        25 ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999998774

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=88.19  E-value=0.18  Score=51.29  Aligned_cols=28  Identities=14%  Similarity=0.141  Sum_probs=23.9

Q ss_pred             eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          221 APYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.+.+|+.++|.|++|+||||++..++.
T Consensus       255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          255 LAIEHKFSAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             HHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred             HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3467899999999999999999987654

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=88.18  E-value=0.32  Score=45.31  Aligned_cols=28  Identities=25%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-.+|.-+.|.|++|+||||++..+...
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4456777999999999999999887653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=88.15  E-value=0.24  Score=43.06  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7999999999999999888764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=88.14  E-value=0.25  Score=45.74  Aligned_cols=21  Identities=33%  Similarity=0.638  Sum_probs=18.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++|+|++|+|||||+..+..
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999976654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=88.14  E-value=0.44  Score=41.92  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .++|.|+.|+||||++..+...
T Consensus        14 iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999877643

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=88.14  E-value=0.32  Score=44.52  Aligned_cols=23  Identities=26%  Similarity=0.289  Sum_probs=19.7

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -.+.|.|++|+||||++..+...
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999877643

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=88.12  E-value=0.29  Score=44.39  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=22.6

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..|..+.|.|++|+|||+|+.+++..
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45778999999999999999998753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=88.05  E-value=0.59  Score=40.60  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      ..++|.|++|+|||||+..++....
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            4678999999999999998887643

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=88.05  E-value=0.53  Score=45.22  Aligned_cols=28  Identities=14%  Similarity=0.171  Sum_probs=23.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .+.-+.|+|++|+|||+++..++.+...
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~   61 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYM   61 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5677899999999999999988876543

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=88.01  E-value=0.34  Score=44.45  Aligned_cols=24  Identities=29%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+-+.|.|++|+|||+|+.++.+.
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHH
Confidence            578999999999999999988754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=87.96  E-value=0.27  Score=42.85  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..++.+
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999988764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=87.96  E-value=0.31  Score=41.61  Aligned_cols=22  Identities=36%  Similarity=0.767  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999887653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=87.93  E-value=0.2  Score=41.56  Aligned_cols=24  Identities=29%  Similarity=0.475  Sum_probs=20.5

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      -+.=|+.|+|++|+|||+|+..+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            345689999999999999998765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=87.91  E-value=0.24  Score=42.60  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +--|+.|+|++|+|||+|+..+..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            344899999999999999987763

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=87.91  E-value=0.26  Score=46.17  Aligned_cols=26  Identities=31%  Similarity=0.537  Sum_probs=22.2

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -|+.+++|+|.+|+|||||+..++.+
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            36679999999999999999887643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=87.89  E-value=0.31  Score=41.91  Aligned_cols=21  Identities=33%  Similarity=0.621  Sum_probs=18.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.|+|.+|+|||+|+..+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            789999999999999987764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=87.84  E-value=0.85  Score=45.35  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=21.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +...+.|+|++|||||+|+..++...
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            44567999999999999998887665

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=87.74  E-value=0.35  Score=41.19  Aligned_cols=23  Identities=39%  Similarity=0.730  Sum_probs=19.9

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =|+.|+|++|+|||+|+..+..+
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999887743

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=87.70  E-value=0.32  Score=43.11  Aligned_cols=20  Identities=35%  Similarity=0.566  Sum_probs=18.6

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      |+.|+|++|||||+|+..++
T Consensus        39 kVvlvG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999998776

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=87.70  E-value=0.27  Score=42.19  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.1

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =|+.|+|++|+|||+|+..+..+
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999999999888754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=87.66  E-value=0.32  Score=43.14  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=18.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |++|+|.+|+|||+|+..+..
T Consensus        31 ~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            789999999999999987764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=87.65  E-value=0.32  Score=47.89  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=25.1

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |-.+.+|.+++|+|.+|+|||||+..+..
T Consensus        14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            33577899999999999999999988775

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=87.54  E-value=0.33  Score=41.71  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            8999999999999999887753

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=87.52  E-value=0.34  Score=49.36  Aligned_cols=25  Identities=36%  Similarity=0.539  Sum_probs=22.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|.-++|+|++|+|||+|+..+...
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999876654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=87.45  E-value=2.3  Score=38.40  Aligned_cols=53  Identities=21%  Similarity=0.122  Sum_probs=32.9

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHh-hcCCEEEEEEeecc-chhHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGFSVFAGVGER-TREGNDLYREMI  278 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~-~~~~~~V~~~IGER-~rEv~~~~~e~~  278 (348)
                      .+|.-+.|-|..|+||||++..+...... .  ++.|+...=|. +....+.++++.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~--g~~v~~~treP~~t~~g~~ir~~l   73 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIY--GVNNVVLTREPGGTLLNESVRNLL   73 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH--CGGGEEEEESSCSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcc--CceeeEeeeCCCCChHHHHHHHHH
Confidence            36778889999999999999888765432 2  33333323332 234445555554

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=87.42  E-value=0.37  Score=44.15  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=19.9

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -|+||+|++|+||||++..+...
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHH
Confidence            37899999999999999877654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=87.40  E-value=0.4  Score=48.62  Aligned_cols=30  Identities=20%  Similarity=0.326  Sum_probs=24.4

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |.=+.+.+ +.++|+|++|+|||||+..+.-
T Consensus        22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence            33457788 9999999999999999975543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=87.40  E-value=0.17  Score=52.04  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=25.1

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.+|+.+.|+|.+|+|||||+..+....
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence            46799999999999999999998776543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=87.40  E-value=0.28  Score=42.12  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhhC
Confidence            7899999999999999887653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=87.38  E-value=0.34  Score=41.15  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=19.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999887643

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=87.35  E-value=0.36  Score=43.46  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .++|.|++|+||||++..+...
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999877653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=87.24  E-value=0.33  Score=54.48  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+.+|++++|.|++|+|||||+.-+.
T Consensus      1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A         1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp             SCCEEECSSSEEEEECSSSTTHHHHHHHHT
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            344789999999999999999999997554

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=87.22  E-value=0.36  Score=41.27  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999887753

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=87.18  E-value=0.41  Score=42.25  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=26.6

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER  266 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER  266 (348)
                      +.|.|++|+|||+++.+++..     +.-++|+..++.
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~   34 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQI   34 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCC
Confidence            689999999999999887632     234689999876

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=87.12  E-value=0.23  Score=49.25  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=18.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .++|+|++|+|||||+..+..
T Consensus        71 ~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            999999999999999976553

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=87.10  E-value=0.82  Score=40.31  Aligned_cols=30  Identities=17%  Similarity=0.100  Sum_probs=25.2

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      ..+|+-..+.|+.|+||||.+..+++|...
T Consensus         5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~   34 (191)
T 1xx6_A            5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKI   34 (191)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            456778888999999999999999988753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=86.96  E-value=0.34  Score=41.32  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=20.1

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.=|+.|+|++|+|||+|+..+..
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            345799999999999999987753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=86.92  E-value=0.35  Score=41.94  Aligned_cols=22  Identities=41%  Similarity=0.685  Sum_probs=19.3

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7899999999999999888753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=86.92  E-value=0.28  Score=41.29  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.0

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -|+.|+|.+|+|||+|+..+..+
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999887654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=86.82  E-value=0.46  Score=41.42  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=19.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      ++-.++|.|++|+||||++..+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~   25 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFA   25 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            34568999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=86.81  E-value=0.36  Score=46.27  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=18.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -+||.|++|+|||||+..+..
T Consensus        94 iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999976644

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=86.81  E-value=0.45  Score=40.60  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=18.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .++|.|++|+||||++..+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999987765

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=86.79  E-value=0.39  Score=44.11  Aligned_cols=24  Identities=25%  Similarity=0.207  Sum_probs=21.1

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +-+.|.|++|+|||+|+.++.+..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc
Confidence            478999999999999999887654

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=86.75  E-value=0.6  Score=47.98  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=22.8

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .++-+.|.|++|+|||+++..++....
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~  229 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAE  229 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            467889999999999999988876543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=86.74  E-value=0.29  Score=45.54  Aligned_cols=26  Identities=35%  Similarity=0.438  Sum_probs=21.8

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..|.-+.|.|++|+|||+|+..+.+.
T Consensus        44 ~~~~~vll~G~pGtGKT~la~~la~~   69 (331)
T 2r44_A           44 CTGGHILLEGVPGLAKTLSVNTLAKT   69 (331)
T ss_dssp             HHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred             HcCCeEEEECCCCCcHHHHHHHHHHH
Confidence            34678999999999999999877653

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=86.67  E-value=0.47  Score=42.62  Aligned_cols=41  Identities=15%  Similarity=0.180  Sum_probs=26.5

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccc
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT  267 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~  267 (348)
                      +.-+.|.|++|+|||+|+..+.+.... ...-.+++-+..-.
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~-~~~~~~~v~~~~~~   69 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSR-WQGPFISLNCAALN   69 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTT-TTSCEEEEEGGGSC
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCc-cCCCeEEEecCCCC
Confidence            457899999999999999866543211 11234555555443

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=86.55  E-value=0.46  Score=42.05  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=19.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.|.|++|+||||++..+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999877653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=86.49  E-value=0.32  Score=45.62  Aligned_cols=20  Identities=35%  Similarity=0.649  Sum_probs=17.5

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      +++|+|++|+|||||+..+.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~   39 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLF   39 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            44999999999999998765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=86.44  E-value=0.36  Score=54.26  Aligned_cols=29  Identities=24%  Similarity=0.434  Sum_probs=25.2

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.+|++++|.|++|+|||||+.-+.
T Consensus       409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~  437 (1284)
T 3g5u_A          409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQ  437 (1284)
T ss_dssp             EEEEECTTCEEEEECCSSSSHHHHHHHTT
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            44689999999999999999999987543

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=86.42  E-value=0.59  Score=45.45  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=23.4

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .-+-+.|+|++|+|||+++..++.+..+
T Consensus        52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~   79 (437)
T 1e9r_A           52 EPRHLLVNGATGTGKSVLLRELAYTGLL   79 (437)
T ss_dssp             GGGCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3578899999999999998878877654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=86.40  E-value=0.46  Score=43.17  Aligned_cols=25  Identities=32%  Similarity=0.210  Sum_probs=21.4

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++..+.|.|.+|+||||++..+...
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567899999999999999888754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=86.32  E-value=0.37  Score=44.92  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=21.9

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -+++..++|.|++|+||||++..++..
T Consensus        33 ~~~~~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           33 PRDLPHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             TTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            345556999999999999999877664

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=86.28  E-value=0.45  Score=41.10  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=21.6

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      --++.|.|.+|+|||||+..++.+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3478999999999999999988764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=86.23  E-value=0.37  Score=42.28  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =|+.|+|.+|+|||+|+..++.+
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999877643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=86.12  E-value=0.48  Score=41.30  Aligned_cols=22  Identities=45%  Similarity=0.721  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+|||+|+..+..+
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            7899999999999999887753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=86.11  E-value=0.41  Score=43.61  Aligned_cols=27  Identities=22%  Similarity=0.334  Sum_probs=21.6

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .|.-.++|.|++|+|||+++..+++..
T Consensus        56 Pkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           56 PKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            343458999999999999998887653

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=86.07  E-value=0.39  Score=48.78  Aligned_cols=24  Identities=38%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +-+|  ++|+|++|+|||+|+..+..
T Consensus        63 ip~G--vLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           63 IPKG--VLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             CCSE--EEEECSSSSSHHHHHHHHHH
T ss_pred             CCce--EEEECCCCCCHHHHHHHHHH
Confidence            4566  99999999999999986654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=85.91  E-value=0.2  Score=42.45  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=5.0

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      =|+.|+|++|+|||+|+..+..+
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            37999999999999999887755

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=85.89  E-value=0.41  Score=43.62  Aligned_cols=21  Identities=33%  Similarity=0.582  Sum_probs=18.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++|+|.+|+|||||+..+..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g   25 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTG   25 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            789999999999999987764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=85.83  E-value=0.24  Score=42.72  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.|.|++|+||||++..+....
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l   24 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAF   24 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            47899999999999998887654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=85.79  E-value=0.48  Score=42.76  Aligned_cols=26  Identities=27%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .|.--+.|+|++|+||+|++..++..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34444678999999999999877653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=85.77  E-value=0.45  Score=40.48  Aligned_cols=20  Identities=25%  Similarity=0.305  Sum_probs=17.5

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      |+.|+|++|+|||+|+..+.
T Consensus        22 ki~~vG~~~vGKTsLi~~l~   41 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVF   41 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999987544

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=85.74  E-value=0.27  Score=42.61  Aligned_cols=23  Identities=30%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |+.|+|.+|+|||+|+..++.+.
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999998866543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=85.72  E-value=0.48  Score=49.24  Aligned_cols=29  Identities=31%  Similarity=0.480  Sum_probs=23.2

Q ss_pred             ceeecccC-----ceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRG-----GKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkG-----Qr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .-+.+.+|     +.++|+|++|+|||||+..+.
T Consensus       366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~  399 (608)
T 3j16_B          366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLA  399 (608)
T ss_dssp             CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEEecCccccceEEEEECCCCCcHHHHHHHHh
Confidence            34566666     789999999999999997554

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=85.55  E-value=0.55  Score=43.47  Aligned_cols=24  Identities=29%  Similarity=0.553  Sum_probs=20.4

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..++|.|++|+|||+++..+++..
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            349999999999999998877654

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=85.33  E-value=0.53  Score=44.63  Aligned_cols=24  Identities=38%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +..++|.|++|||||+++..++..
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999877653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=85.29  E-value=0.46  Score=42.56  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.6

Q ss_pred             ceeEeecCCCCcHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -+++|+|.+|+|||+|+..++.
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            4799999999999999988764

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=85.28  E-value=0.51  Score=45.03  Aligned_cols=24  Identities=33%  Similarity=0.422  Sum_probs=20.1

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..-++|.|++|+|||+|+..+++.
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999877653

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=85.10  E-value=0.5  Score=44.34  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=19.2

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +++.|++|+|||+++..++...
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7999999999999998777653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=85.06  E-value=0.5  Score=53.26  Aligned_cols=29  Identities=28%  Similarity=0.524  Sum_probs=25.1

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+-+|++++|.|++|+|||||+.-+.
T Consensus       437 isl~i~~G~~vaivG~sGsGKSTll~ll~  465 (1321)
T 4f4c_A          437 MNLRVNAGQTVALVGSSGCGKSTIISLLL  465 (1321)
T ss_dssp             EEEEECTTCEEEEEECSSSCHHHHHHHHT
T ss_pred             eEEeecCCcEEEEEecCCCcHHHHHHHhc
Confidence            34688999999999999999999997554

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=84.96  E-value=0.36  Score=40.53  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=19.8

Q ss_pred             cCceeEeecCCCCcHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +-=|+.|+|++|+|||+|+..+.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            44589999999999999998764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=84.78  E-value=0.47  Score=48.75  Aligned_cols=27  Identities=22%  Similarity=0.366  Sum_probs=23.1

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+..|+.++|.|++|+|||+|+..+..
T Consensus        56 ~i~~g~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           56 AANQKRHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             HHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence            356788999999999999999986654

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=84.69  E-value=0.84  Score=47.07  Aligned_cols=53  Identities=19%  Similarity=0.221  Sum_probs=32.7

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNVAKAHG-GFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~a~~~~-~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      ..-..|.||+|+|||+++..++....+..+ .+.|.   .-...-+.++.+.+.+.+
T Consensus       195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~---a~tn~A~~~l~~~l~~~~  248 (624)
T 2gk6_A          195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC---APSNIAVDQLTEKIHQTG  248 (624)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE---ESSHHHHHHHHHHHHTTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE---eCcHHHHHHHHHHHHhcC
Confidence            446789999999999999998876543222 23333   333444445555554443

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=84.41  E-value=1.3  Score=46.44  Aligned_cols=27  Identities=30%  Similarity=0.444  Sum_probs=22.3

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+...++|.|++|||||+++..++...
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            345568999999999999998877654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=84.40  E-value=0.49  Score=46.90  Aligned_cols=32  Identities=22%  Similarity=0.285  Sum_probs=27.0

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -|.-+.+-.|..++|+|++|+|||||+..+..
T Consensus       148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg  179 (416)
T 1udx_A          148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTR  179 (416)
T ss_dssp             EEEEEEECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred             eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            35556788999999999999999999986654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=84.35  E-value=0.62  Score=41.44  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=22.5

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..|.=++|.|++|+|||||+.+++..
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            35677899999999999999999864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=84.14  E-value=1.8  Score=46.13  Aligned_cols=27  Identities=30%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      +...+.|.|++|+|||+|+..++....
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l~  216 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRIV  216 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence            344589999999999999988877653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=84.09  E-value=0.29  Score=40.32  Aligned_cols=22  Identities=23%  Similarity=0.161  Sum_probs=18.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      .+.-+.|.|++|+|||+++..+
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i   47 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYF   47 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGG
T ss_pred             CCCcEEEECCCCccHHHHHHHH
Confidence            3456899999999999998654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=84.08  E-value=0.63  Score=44.26  Aligned_cols=24  Identities=33%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..-+.|.|++|||||+|+..+++.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            446899999999999999877653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=84.04  E-value=0.55  Score=47.35  Aligned_cols=25  Identities=36%  Similarity=0.566  Sum_probs=20.2

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.+|  ++|.|++|+|||+|+..++..
T Consensus        48 ~p~g--vLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           48 MPKG--ILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             CCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCe--EEEECCCCCCHHHHHHHHHHH
Confidence            3355  899999999999999876643

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=84.39  E-value=0.21  Score=42.75  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=20.6

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.=|+.|+|.+|+|||+|+..+..+
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            4458999999999999999777643

>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*

Probab=83.90  E-value=0.96  Score=45.92  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=22.1

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      .+.+.|.|++|+|||+++..-|.+..+
T Consensus        22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~   48 (647)
T 3lfu_A           22 RSNLLVLAGAGSGKTRVLVHRIAWLMS   48 (647)
T ss_dssp             SSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence            456899999999999998887766554

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=83.88  E-value=0.52  Score=40.56  Aligned_cols=21  Identities=48%  Similarity=0.773  Sum_probs=18.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.|+|.+|+|||+|+..++.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999977663

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=83.73  E-value=0.42  Score=44.27  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+-+.|.|++|+|||+|+..+.+.
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~   68 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAAL   68 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHh
Confidence            345999999999999999877654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=83.69  E-value=0.63  Score=45.94  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=19.6

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .-++|+|++|||||+|+..+++.
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999877654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=83.57  E-value=0.76  Score=44.91  Aligned_cols=27  Identities=26%  Similarity=0.385  Sum_probs=22.4

Q ss_pred             cccCce--eEeecCCCCcHHHHHHHHHHH
Q 018957          223 YQRGGK--IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       223 igkGQr--~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.+|++  +.|+|++|+||||++..++..
T Consensus        19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           19 IEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             TTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            446777  999999999999999877654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=83.56  E-value=0.77  Score=42.84  Aligned_cols=25  Identities=16%  Similarity=0.255  Sum_probs=17.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++-.++|-|++|+||||++..+...
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3446899999999999999877653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=83.51  E-value=0.64  Score=45.94  Aligned_cols=28  Identities=32%  Similarity=0.481  Sum_probs=23.7

Q ss_pred             ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          222 PYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       222 PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -+.+|.+++|+|.+|+|||||+..+...
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4678899999999999999999877643

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=83.35  E-value=0.74  Score=45.43  Aligned_cols=26  Identities=31%  Similarity=0.523  Sum_probs=21.4

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+..+++.|++|||||+|+..+++..
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l   87 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQEL   87 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHh
Confidence            34569999999999999998777653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=83.26  E-value=0.68  Score=42.82  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.4

Q ss_pred             ceeEeecCCCCcHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -+++|+|.+|+|||+|+..+..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHC
Confidence            3789999999999999988764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=83.15  E-value=0.87  Score=48.96  Aligned_cols=20  Identities=40%  Similarity=0.664  Sum_probs=17.4

Q ss_pred             eEeecCCCCcHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++.|++|||||+|+..+++
T Consensus       241 ILL~GPPGTGKT~LAraiA~  260 (806)
T 3cf2_A          241 ILLYGPPGTGKTLIARAVAN  260 (806)
T ss_dssp             EEEECCTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999876653

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=83.02  E-value=0.33  Score=46.71  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=25.7

Q ss_pred             ceeee-eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          213 GIKVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       213 GIkvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      +++.+ |.=+.+.+| ..+|+|+.|+|||||+.-+
T Consensus        47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI   80 (415)
T 4aby_A           47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDAL   80 (415)
T ss_dssp             EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHH
T ss_pred             cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHH
Confidence            44444 334678899 9999999999999998543

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=82.97  E-value=0.34  Score=41.82  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=20.6

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      --|+.|+|.+|+|||+|+..+..+
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            348999999999999999887654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=82.94  E-value=0.82  Score=40.63  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=21.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ||..+.|-|..|+||||++..+...
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4667899999999999999877654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=82.83  E-value=0.67  Score=42.85  Aligned_cols=20  Identities=35%  Similarity=0.516  Sum_probs=18.1

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      .++|.|++|+||||++..+.
T Consensus        77 iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           77 VLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999998776

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=82.74  E-value=0.85  Score=41.34  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ..+.|.|++|+|||+++..+++..
T Consensus        39 ~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECcCCcCHHHHHHHHHHHh
Confidence            358999999999999998887654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=82.52  E-value=0.76  Score=41.91  Aligned_cols=21  Identities=43%  Similarity=0.558  Sum_probs=19.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++++|.+|+|||+|+..+..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            789999999999999988764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=82.50  E-value=3.1  Score=39.06  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.3

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .++.|++|+|||+++..+++..
T Consensus        27 ~L~~G~~G~GKt~~a~~la~~l   48 (334)
T 1a5t_A           27 LLIQALPGMGDDALIYALSRYL   48 (334)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCchHHHHHHHHHHHH
Confidence            7888999999999999887654

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=82.49  E-value=0.94  Score=46.71  Aligned_cols=20  Identities=20%  Similarity=0.385  Sum_probs=17.7

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      -++|.|++|+|||+|+..+.
T Consensus       329 ~vLL~GppGtGKT~LAr~la  348 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFIS  348 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSS
T ss_pred             ceEEECCCchHHHHHHHHHH
Confidence            69999999999999987654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=82.48  E-value=0.68  Score=42.23  Aligned_cols=26  Identities=35%  Similarity=0.599  Sum_probs=18.0

Q ss_pred             ecccCc--eeEeecCCCCcHHHHHHHHH
Q 018957          222 PYQRGG--KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       222 PigkGQ--r~gIfg~~GvGKT~L~~~ii  247 (348)
                      |+-||-  ++.|+|.+|+|||||+..+.
T Consensus         2 p~~~g~~~~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A            2 PLGSGFEFTLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             -----CEEEEEEEECTTSSHHHHHHHHS
T ss_pred             CCcCccEEEEEEECCCCCCHHHHHHHHh
Confidence            444553  79999999999999987653

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=82.40  E-value=1.8  Score=44.08  Aligned_cols=49  Identities=14%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHHHHHhh-cC-CEEEEEEeeccchh
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA-HG-GFSVFAGVGERTRE  269 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-~~-~~~V~~~IGER~rE  269 (348)
                      .+.+.+|..++|.|.+|+|||+++..++...+.. .+ ++.+| ++.-++.|
T Consensus       161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~-liDpK~~e  211 (512)
T 2ius_A          161 VADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFI-MIDPKMLE  211 (512)
T ss_dssp             EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEE-EECCSSSG
T ss_pred             EEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEE-EECCchhh
Confidence            4567889999999999999999999888765432 23 34444 45555433

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=82.31  E-value=0.9  Score=39.36  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=19.7

Q ss_pred             CceeEeecCCCCcHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +..++|.|++|+||||++..+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999987665

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=82.31  E-value=0.8  Score=44.35  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -++|.|++|+|||+|+..++..
T Consensus         9 lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCcHHHHHHHHHHH
Confidence            4799999999999999988764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=82.30  E-value=0.69  Score=43.36  Aligned_cols=25  Identities=28%  Similarity=0.531  Sum_probs=21.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |-.+++|+|.+|+|||||+..++.+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457999999999999999888753

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=82.13  E-value=1.6  Score=38.67  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=22.1

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-+|+-+.|.|+.|+|||+++...+.+
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence            457899999999999999877665544

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=82.09  E-value=1.1  Score=44.50  Aligned_cols=27  Identities=33%  Similarity=0.345  Sum_probs=23.0

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      ...+.|+|.+|+||||++..++...++
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~  125 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQK  125 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999998876543

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=82.06  E-value=0.95  Score=41.09  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.|.|++|+|||+++..+++..
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            48999999999999998887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=81.57  E-value=0.82  Score=44.90  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=19.5

Q ss_pred             ceeEeecCCCCcHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      =|++|+|++|+|||||+..++.
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g  202 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILN  202 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999987764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=81.46  E-value=0.7  Score=45.80  Aligned_cols=20  Identities=35%  Similarity=0.597  Sum_probs=17.2

Q ss_pred             eEeecCCCCcHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~  248 (348)
                      ++|+|++|+|||||+..++.
T Consensus        34 I~lvG~sGaGKSTLln~L~g   53 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFL   53 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            49999999999999976653

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=81.20  E-value=1.2  Score=48.69  Aligned_cols=31  Identities=16%  Similarity=-0.035  Sum_probs=27.3

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      -|.-+.+.+|+-++|.|+.|+||||++..+.
T Consensus       653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             EEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             ccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4667788899999999999999999998873

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=81.02  E-value=0.77  Score=41.98  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=21.4

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.=|+.|+|.+|+|||+|+..++.+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~  178 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTN  178 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhC
Confidence            4458999999999999999888764

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=80.79  E-value=0.65  Score=47.08  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +..|.-++|.|++|+|||+|+..+..
T Consensus        38 l~~~~~VLL~GpPGtGKT~LAraLa~   63 (500)
T 3nbx_X           38 ALSGESVFLLGPPGIAKSLIARRLKF   63 (500)
T ss_dssp             HHHTCEEEEECCSSSSHHHHHHHGGG
T ss_pred             HhcCCeeEeecCchHHHHHHHHHHHH
Confidence            34567899999999999999976654

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=80.79  E-value=1  Score=41.90  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      -+.|.|++|+|||+++..+++..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l   62 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGL   62 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999998877654

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=80.71  E-value=2.2  Score=38.67  Aligned_cols=47  Identities=21%  Similarity=0.167  Sum_probs=28.6

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEE-Eeeccchh
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA-GVGERTRE  269 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~-~IGER~rE  269 (348)
                      -.+|+-..+.|+.|+||||.+.+++.|...+...+.||- .++.|..|
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge   72 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSE   72 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchH
Confidence            356777778899999999999999988754333344432 55666443

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=80.69  E-value=0.95  Score=42.23  Aligned_cols=24  Identities=33%  Similarity=0.578  Sum_probs=20.5

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-|+.++|.+|+|||+|+..+..+
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            358999999999999999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d2jdid3	276	c.37.1.11 (D:82-357) Central domain of beta subuni	5e-79
d2jdia3	285	c.37.1.11 (A:95-379) Central domain of alpha subun	3e-67
d1fx0a3	276	c.37.1.11 (A:97-372) Central domain of alpha subun	7e-48
d2jdid2	72	b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, d	5e-31
d1fx0b2	79	b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, d	2e-28
d1skye2	82	b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, do	3e-27
d1xpua3	289	c.37.1.11 (A:129-417) Transcription termination fa	2e-25

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  241 bits (616), Expect = 5e-79
 Identities = 153/184 (83%), Positives = 163/184 (88%), Gaps = 2/184 (1%)

Query: 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD 218
           I +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ+ILVTGIKVVD
Sbjct: 1   IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVD 60

Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278
           LLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY EMI
Sbjct: 61  LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 120

Query: 279 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIF 338
           ESGVI L D  A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIF
Sbjct: 121 ESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 178

Query: 339 RFTQ 342
           RFTQ
Sbjct: 179 RFTQ 182

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Length = 285

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  211 bits (538), Expect = 3e-67
 Identities = 43/191 (22%), Positives = 90/191 (47%), Gaps = 16/191 (8%)

Query: 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD 218
           + VPVG   LGR+++ +G  ID KG + ++    +  +AP  + + + ++ + TGIK VD
Sbjct: 1   VDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVD 60

Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-------FSVFAGVGERTREGN 271
            L P  RG +  + G    GKT + ++ I N  + + G       + ++  +G++     
Sbjct: 61  SLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVA 120

Query: 272 DLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVL 331
            L + + ++  +K           +V    ++    +     +G ++ E+FRD  G+  L
Sbjct: 121 QLVKRLTDADAMK--------YTIVVSATASDAAPLQYLAPYSGCSMGEYFRD-NGKHAL 171

Query: 332 LFIDNIFRFTQ 342
           +  D++ +   
Sbjct: 172 IIYDDLSKQAV 182

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

 Score =  160 bits (407), Expect = 7e-48
 Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 10/182 (5%)

Query: 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLL 220
           +PV    LGR++N + +PID +G++       I   AP  + + +  + L TG+  +D +
Sbjct: 2   IPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAM 61

Query: 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIES 280
            P  RG +  + G    GKT +  + I N  +      V+  +G++      +     E 
Sbjct: 62  IPVGRGQRELIIGDRQTGKTAVATDTILN-QQGQNVICVYVAIGQKASSVAQVVTNFQER 120

Query: 281 GVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340
           G ++           +V    + P   +     TG  +AE+F     +  L+  D++ + 
Sbjct: 121 GAME--------YTIVVAETADSPATLQYLAPYTGAALAEYFMY-RERHTLIIYDDLSKQ 171

Query: 341 TQ 342
            Q
Sbjct: 172 AQ 173

>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 72

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (276), Expect = 5e-31
 Identities = 53/71 (74%), Positives = 61/71 (85%)

Query: 88  GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLV 147
           G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLV
Sbjct: 2   GRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLV 61

Query: 148 RGQRVLNTGSP 158
           RGQ+VL++G+P
Sbjct: 62  RGQKVLDSGAP 72

>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 79

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

 Score =  103 bits (259), Expect = 2e-28
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 6/78 (7%)

Query: 87  IGQVCQVIGAVVDVRFDEG-LPPILTALEV-----VDHSVRLVLEVAQHMGEGVVRTIAM 140
           +G++ Q+IG V++V F  G +P I  AL V         + +  EV Q +G   VR +AM
Sbjct: 2   LGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAM 61

Query: 141 DGTEGLVRGQRVLNTGSP 158
             T+GL RG  V++TG+P
Sbjct: 62  SATDGLTRGMEVIDTGAP 79

>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]} Length = 82

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Bacillus sp., strain ps3 [TaxId: 1409]

 Score =  100 bits (251), Expect = 3e-27
 Identities = 38/79 (48%), Positives = 53/79 (67%), Gaps = 8/79 (10%)

Query: 88  GQVCQVIGAVVDVRFDEG-LPPILTALEV-------VDHSVRLVLEVAQHMGEGVVRTIA 139
           G+V QV+G VVDV+F+ G LP I  AL++        +  + L LEVA H+G+  VRTIA
Sbjct: 4   GRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIA 63

Query: 140 MDGTEGLVRGQRVLNTGSP 158
           M  T+GL+RG  V++TG+P
Sbjct: 64  MASTDGLIRGMEVIDTGAP 82

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Length = 289

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (253), Expect = 2e-25
 Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 188 EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247
           E+  P+H  +   +E+           +V+DL +P  RG +  +      GKT+L+  + 
Sbjct: 6   ENLTPLHANSRLRMERGNGSTED-LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 64

Query: 248 NNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGA 307
            ++A  H    +   + +   E     + +++  V              V    +EP   
Sbjct: 65  QSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEV--------------VASTFDEPASR 110

Query: 308 RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342
             +V    +  A+   +   +DV++ +D+I R  +
Sbjct: 111 HVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLAR 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	100.0
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	100.0
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	100.0
d1xpua3	289	Transcription termination factor Rho, ATPase domai	100.0
d2jdid2	72	F1 ATP synthase beta subunit, domain 1 {Rat (Rattu	99.75
d1fx0b2	79	F1 ATP synthase beta subunit, domain 1 {Spinach (S	99.71
d1skye2	82	F1 ATP synthase beta subunit, domain 1 {Bacillus s	99.69
d1skyb2	75	F1 ATP synthase alpha subunit, domain 1 {Bacillus	98.5
d2jdia2	71	F1 ATP synthase alpha subunit, domain 1 {Cow (Bos	98.5
d1fx0a2	72	F1 ATP synthase alpha subunit, domain 1 {Spinach (	98.35
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	98.05
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.93
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.77
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.62
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.6
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.6
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.58
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.57
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.48
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.23
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.96
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.98
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.94
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.91
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.9
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.86
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.85
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.84
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.65
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.58
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.48
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.43
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.38
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.34
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.29
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.28
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.24
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.2
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.13
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.12
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.12
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.09
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.08
d1okkd2	207	GTPase domain of the signal recognition particle r	95.06
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.99
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.99
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.94
d1j8yf2	211	GTPase domain of the signal sequence recognition p	94.85
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.85
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.8
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.63
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.62
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.54
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.54
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.53
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.51
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.44
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.42
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.41
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.41
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.33
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.31
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	94.23
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.23
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	94.19
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.18
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.13
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.04
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.02
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.86
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.81
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.76
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	93.67
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.64
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.63
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.59
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.58
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.48
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.34
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.33
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.33
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.32
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.31
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.24
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.24
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	93.22
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	93.17
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.16
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.16
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.12
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.12
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.11
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	93.1
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.1
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.08
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.08
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.06
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.05
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.04
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.98
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.97
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.94
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.88
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	92.87
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.85
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	92.84
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	92.82
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.78
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.77
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.73
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	92.72
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	92.71
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.67
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	92.64
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.61
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.55
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.5
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.49
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.48
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.47
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.43
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.4
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	92.38
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	92.38
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.23
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	92.14
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.12
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.1
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.1
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.09
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	91.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	91.93
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	91.92
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	91.8
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.8
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	91.65
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.65
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.63
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	91.54
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.38
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.36
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	91.33
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.31
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.25
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	91.24
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	91.22
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.21
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.16
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.13
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	91.06
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	90.96
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	90.9
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	90.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.85
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	90.84
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	90.84
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.78
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	90.78
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	90.68
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.63
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	90.55
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.49
d2fh5b1	207	Signal recognition particle receptor beta-subunit	90.42
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	90.38
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	90.36
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	90.21
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	90.06
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.95
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	89.88
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	89.84
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	89.78
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.47
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	89.41
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.01
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	88.78
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	88.72
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	88.59
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	88.35
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	88.28
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	88.24
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	88.13
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	87.81
d1nrjb_	209	Signal recognition particle receptor beta-subunit	87.75
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	87.43
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	87.4
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	87.39
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	87.37
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	87.08
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	86.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	86.86
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	86.76
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	86.18
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.43
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.17
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	84.66
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	84.34
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	84.09
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	84.08
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	83.83
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	82.85
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	82.7
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.13
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	82.04
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	81.19
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	81.18
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	81.02
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	80.89
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	80.54
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	80.16
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	80.14

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.3e-61  Score=454.39  Aligned_cols=187  Identities=82%  Similarity=1.234  Sum_probs=178.9

Q ss_pred             ceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCc
Q 018957          159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG  238 (348)
Q Consensus       159 l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvG  238 (348)
                      ++||||++|||||+|++|+|||+++++...++|||++.+|+|++|..++++|+||||+||+|+||+||||++|||++|+|
T Consensus         1 l~vpVG~~lLGRVid~lG~piDg~~~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGIraID~l~pigkGQr~~If~~~g~G   80 (276)
T d2jdid3           1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG   80 (276)
T ss_dssp             CEEECSGGGBTCEECTTSCBCSSSCCCCCSCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSS
T ss_pred             CeeecCccccCCEeCCCcceeCCCCCCCCcccccccCCCCChhHhcCCCcccccCceeeeeeccccCCCEEEeeCCCCCC
Confidence            58999999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957          239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV  318 (348)
Q Consensus       239 KT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ti  318 (348)
                      ||+|+++|++|+.++|.++|||++||||+||+.+|+++|.+.+++..  ++.++|+++|++|+|+||.+|+++||+|+|+
T Consensus        81 Kt~l~~~i~~~~~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~--~~~~~~tvvv~~~s~~~~~~r~~~~~~a~~i  158 (276)
T d2jdid3          81 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTV  158 (276)
T ss_dssp             HHHHHHHHHHHHTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCS--SSSCCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEEEeccChHHHHHHHHHHHhcCcccc--ccccceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence            99999999999877788999999999999999999999999997653  3468899999999999999999999999999


Q ss_pred             HHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          319 AEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       319 AEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||||||++||||||++|||||||+|+||+
T Consensus       159 AEyf~~~~G~~VLv~~Dsltr~A~A~rei  187 (276)
T d2jdid3         159 AEYFRDQEGQDVLLFIDNIFRFTQAGSEV  187 (276)
T ss_dssp             HHHHHHTTCSCEEEEEECTHHHHHHHHHH
T ss_pred             HHHHHhcCCCeEEEEEcchhHHHHHHHHH
Confidence            99999867999999999999999999986

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.3e-57  Score=431.17  Aligned_cols=180  Identities=23%  Similarity=0.423  Sum_probs=170.8

Q ss_pred             ceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCc
Q 018957          159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG  238 (348)
Q Consensus       159 l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvG  238 (348)
                      ++||||++|||||+|++|+|||+++++..+++||++.++|+|++|..+++||+||||+||+|+||+||||++|||++|+|
T Consensus         1 i~VPVG~~lLGRVid~~G~piDg~~~~~~~~~~~i~~~~p~~~~R~~i~e~l~TGIraID~l~pig~GQr~~If~~~g~G   80 (285)
T d2jdia3           1 VDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTG   80 (285)
T ss_dssp             CEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSS
T ss_pred             CccccCcCccCcEECCCccccCCCCCCCCCccccccCCCcCchhccCCCcccccCceEEecccCccCCCEEEeecCCCCC
Confidence            47999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc-------CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHH
Q 018957          239 KTVLIMELINNVAKAH-------GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARV  311 (348)
Q Consensus       239 KT~L~~~ii~n~a~~~-------~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a  311 (348)
                      ||+|++++++|+.+.|       ..++||++||||+||+.+|++++.+.++        ++||++|++|+|+||.+|+++
T Consensus        81 Kt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~--------~~~tvvv~~ts~~~~~~r~~~  152 (285)
T d2jdia3          81 KTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA--------MKYTIVVSATASDAAPLQYLA  152 (285)
T ss_dssp             HHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC--------GGGEEEEEECTTSCHHHHHHH
T ss_pred             hHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhccccc--------ccceEEEEECCCCCHHHHHHH
Confidence            9999999999986533       2379999999999999999999998874        469999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          312 GLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       312 ~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      +|+|+|+|||||| +||||||++|||||||||+||+
T Consensus       153 ~~~a~tiAEyfrd-~G~~VLll~Dsltr~A~A~rEi  187 (285)
T d2jdia3         153 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQM  187 (285)
T ss_dssp             HHHHHHHHHHHHH-TTCEEEEEEETHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCcEEEEEcChHHHHHHHHHH
Confidence            9999999999999 7999999999999999999996

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=100.00  E-value=5e-57  Score=428.22  Aligned_cols=178  Identities=22%  Similarity=0.396  Sum_probs=170.0

Q ss_pred             eecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcH
Q 018957          160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK  239 (348)
Q Consensus       160 ~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGK  239 (348)
                      +||||++|||||+|++|+|||+++++..+++||++.++|+|++|..+++||+||||+||+|+||+||||++|||++|+||
T Consensus         1 qvPvg~~llGRv~d~~G~piDg~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pig~GQr~~Ifg~~g~GK   80 (276)
T d1fx0a3           1 QIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGK   80 (276)
T ss_dssp             EEEESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSH
T ss_pred             CCCCCccccccEeCCCccccCCCCCCCCCccccccCCCcChhhccCCCccccccceEEeccccccCCceEeeccCCCCCh
Confidence            58999999999999999999999999888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHH
Q 018957          240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA  319 (348)
Q Consensus       240 T~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiA  319 (348)
                      |+|++++++|+ +.+.++|||++||||++|+.++++++.+.+++        +||++|++++|+|+.+|++++|+|+|+|
T Consensus        81 t~l~~~~~~~~-~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~--------~~tvvv~~tsd~p~~~r~~a~~~a~tiA  151 (276)
T d1fx0a3          81 TAVATDTILNQ-QGQNVICVYVAIGQKASSVAQVVTNFQERGAM--------EYTIVVAETADSPATLQYLAPYTGAALA  151 (276)
T ss_dssp             HHHHHHHHHTC-CTTTCEEEEEEESCCHHHHHHHHHHTGGGTGG--------GSEEEEEECTTSCGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHhhh-cccCceeeeeeecchhHHHHHHHHhhccCCcc--------eeeeecccccCccHHHHHHHHHHHHHHH
Confidence            99999988876 34668999999999999999999999888754        6999999999999999999999999999


Q ss_pred             HHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957          320 EHFRDAEGQDVLLFIDNIFRFTQVSFIL  347 (348)
Q Consensus       320 Eyfrd~~G~dVLli~DslTR~A~A~~e~  347 (348)
                      ||||| +||||||++|||||||+|+||+
T Consensus       152 Eyfrd-~G~~Vlll~Dsltr~A~A~rEi  178 (276)
T d1fx0a3         152 EYFMY-RERHTLIIYDDLSKQAQAYRQM  178 (276)
T ss_dssp             HHHHH-TTCEEEEEEECHHHHHHHHHHH
T ss_pred             HHHHH-cCCceeEEeeccHHHHHHHHHH
Confidence            99999 7999999999999999999996

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.7e-40  Score=311.30  Aligned_cols=144  Identities=22%  Similarity=0.330  Sum_probs=124.0

Q ss_pred             ccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC-EEEEEEeec
Q 018957          187 TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-FSVFAGVGE  265 (348)
Q Consensus       187 ~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~-~~V~~~IGE  265 (348)
                      .+...||+...+.+++|... ++++||+|+||+|+|||||||++||||+|+|||+|++++++|+...|.+ ++|++++||
T Consensus         5 fd~l~Pi~p~~r~~le~~~~-~~~~~~~r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~v~~~~~ige   83 (289)
T d1xpua3           5 FENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE   83 (289)
T ss_dssp             GGCCCCCSTTSBCCC----C-CSTHHHHHHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred             CCCCCCCCCCCccccccCCC-CcccccceeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEeece
Confidence            44566777666667777763 4778899999999999999999999999999999999999998765555 678899999


Q ss_pred             cchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhc
Q 018957          266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSF  345 (348)
Q Consensus       266 R~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~  345 (348)
                      |.+|+.++++    .           .+++||++|+|+||.+|++++|+|+++|||||| +|+||||++||+||||+|+|
T Consensus        84 r~~ev~~~~~----~-----------~~~~vv~~t~d~~~~~r~~~~~~a~~iAEyfrd-~G~dVLli~Dsltr~A~A~r  147 (289)
T d1xpua3          84 RPEEVTEMQR----L-----------VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYN  147 (289)
T ss_dssp             CHHHHHHHHH----H-----------CSSEEEEEETTSCHHHHHHHHHHHHHHHHHHHT-TTCEEEEEESCHHHHHHHHH
T ss_pred             eHHHHHhHHh----h-----------cceEEEeccCCCchhHHHHHHHHHHHHHHHHHH-hccCceeecCcHHHHHHHHH
Confidence            9999976443    2           378999999999999999999999999999999 89999999999999999999


Q ss_pred             cc
Q 018957          346 IL  347 (348)
Q Consensus       346 e~  347 (348)
                      |+
T Consensus       148 Ei  149 (289)
T d1xpua3         148 TV  149 (289)
T ss_dssp             HH
T ss_pred             HH
Confidence            97

>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2e-18  Score=131.14  Aligned_cols=72  Identities=74%  Similarity=1.151  Sum_probs=67.8

Q ss_pred             eeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCC
Q 018957           87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSP  158 (348)
Q Consensus        87 ~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~  158 (348)
                      .|+|+||+|+||||+|+++||++++++++...+..+++||+||+|++.||+++|+.|+||++|++|.+||.|
T Consensus         1 TG~VvqV~G~VVDV~F~~~lP~i~~aL~v~~~~~~~vlEV~qhlg~~~VR~IAl~~TdGL~RG~~V~~tG~P   72 (72)
T d2jdid2           1 TGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAP   72 (72)
T ss_dssp             EEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSS
T ss_pred             CceEEEEECCEEEEECCCCCCchheEEEEeCCCceEEEEEeeecCCCeEEEEEecCccCccCCCEEEeCCCC
Confidence            389999999999999998999999999987656679999999999999999999999999999999999976

>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=99.71  E-value=1e-17  Score=129.39  Aligned_cols=73  Identities=40%  Similarity=0.717  Sum_probs=66.0

Q ss_pred             ceeeEEEEECCEEEEEeCC-CChhhhhceEEeec-----CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCC
Q 018957           86 AIGQVCQVIGAVVDVRFDE-GLPPILTALEVVDH-----SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSP  158 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~-glp~i~~~lev~~~-----~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~  158 (348)
                      ++|+|+||+|+||||+|++ .||+|++++++...     +..+++||+||+|++.||+++|++|+||++|++|.+||.|
T Consensus         1 N~G~IvqV~G~VVDV~F~~~~lP~I~~AL~v~~~~~~~~~~~lvlEV~qhlg~~~VR~IAm~sTdGL~RG~~V~dtG~P   79 (79)
T d1fx0b2           1 NLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAP   79 (79)
T ss_dssp             CCEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSS
T ss_pred             CCcEEEEEEcceEEEECCCCCCCCcceeEEEeccCCCCCeeEEEEEEeEccCCCEEEEEEecCCcCccCCCEEEeCCCC
Confidence            4799999999999999986 59999999988532     2368999999999999999999999999999999999976

>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase beta subunit, domain 1
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=99.69  E-value=2.4e-17  Score=128.25  Aligned_cols=73  Identities=52%  Similarity=0.915  Sum_probs=65.5

Q ss_pred             ceeeEEEEECCEEEEEeCCC-ChhhhhceEEeecC-------ceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHS-------VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS  157 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~g-lp~i~~~lev~~~~-------~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~  157 (348)
                      +.|+|+||+|+||||+|+++ ||++++++++....       ..+++||+||+|++.||+++|+.|+||++|++|.+||.
T Consensus         2 ~~G~VvqV~G~VVDV~F~~~~lP~I~~AL~v~~~~~~~~~~~~~lvlEV~qhlg~~~VR~IAm~~TdGL~RG~~V~dTG~   81 (82)
T d1skye2           2 TRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGA   81 (82)
T ss_dssp             CEEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEE
T ss_pred             CCcEEEEEEcceEEEECCCCCCCCcceEEEEEecCCCcccccceEEEEehhhcCCCeEEEEEecCccCccCCCEEEeCCC
Confidence            36999999999999999864 99999999885422       25899999999999999999999999999999999986


Q ss_pred             C
Q 018957          158 P  158 (348)
Q Consensus       158 ~  158 (348)
                      |
T Consensus        82 P   82 (82)
T d1skye2          82 P   82 (82)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1skyb2 b.49.1.1 (B:21-95) F1 ATP synthase alpha subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 1
species: Bacillus sp., strain ps3 [TaxId: 1409]

Probab=98.50  E-value=1.1e-07  Score=71.99  Aligned_cols=69  Identities=25%  Similarity=0.373  Sum_probs=61.7

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCC
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSP  158 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~  158 (348)
                      .++|+|.+|.+.|+.|.   |||++. .-|++.|+. -..+++++|+++.|.+++|+++..|+.|+.|++||+.
T Consensus         6 ~e~G~V~~V~DGIA~v~---GL~~a~-~gElv~F~~-g~~GlvlnLe~d~VgvVllg~~~~i~~G~~V~rTg~v   74 (75)
T d1skyb2           6 SDVGTVIQVGDGIARAH---GLDNVM-SGEAVEFAN-AVMGMALNLEENNVGIVILGPYTGIKEGDEVRRTGRI   74 (75)
T ss_dssp             GGEEEEEEEETTEEEEE---ECTTCC-TTEEEEETT-SCEEEEEEEETTEEEEEESSCCSSCCTTCEEEEEEEE
T ss_pred             EEeEEEEEEcCcEEEEE---CCcccc-cCCeEEeCC-CCEEEEEeccCcEEEEEEECCCCcccCCCEEEecccc
Confidence            36899999999999997   999997 567777764 4789999999999999999999999999999999864

>d2jdia2 b.49.1.1 (A:24-94) F1 ATP synthase alpha subunit, domain 1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.50  E-value=1.3e-07  Score=70.71  Aligned_cols=68  Identities=21%  Similarity=0.278  Sum_probs=60.4

Q ss_pred             CceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCC
Q 018957           85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS  157 (348)
Q Consensus        85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~  157 (348)
                      .++|+|.+|.+.|+.|.   |||++. .-|++.++. -..+++++|+++.|.+++|+++..|+.|++|++||+
T Consensus         3 ~e~G~V~~VgDGIA~V~---GL~~a~-~~Elv~F~~-g~~GlalnL~e~~VgvVllg~~~~i~eG~~V~rTG~   70 (71)
T d2jdia2           3 EETGRVLSIGDGIARVH---GLRNVQ-AEEMVEFSS-GLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGA   70 (71)
T ss_dssp             TTEEEEEEEETTEEEEE---ECTTCB-TTCEEEETT-SCEEEEEEECSSCEEEEESSCGGGCCTTCEEECCCC
T ss_pred             ceEEEEEEEcCcEEEEE---CCcccc-cCCEEEECC-CCEEEEEeecccEEEEEEECCCCccCCCCEEEeccc
Confidence            35799999999999997   999987 457777754 467999999999999999999999999999999996

>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: All beta proteins
fold: Domain of alpha and beta subunits of F1 ATP synthase-like
superfamily: N-terminal domain of alpha and beta subunits of F1 ATP synthase
family: N-terminal domain of alpha and beta subunits of F1 ATP synthase
domain: F1 ATP synthase alpha subunit, domain 1
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=98.35  E-value=1.9e-07  Score=70.00  Aligned_cols=68  Identities=24%  Similarity=0.293  Sum_probs=60.7

Q ss_pred             ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCC
Q 018957           86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSP  158 (348)
Q Consensus        86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~  158 (348)
                      +.|+|.+|.+.|+.|.   |||++. .-|++.|+. -..+++++|+++.|.+++|+++..|+.|+.|++||+.
T Consensus         4 ~~G~V~~VgDGIa~V~---GL~~~~-~~Elv~F~~-g~~G~alnLe~d~VgvVllg~~~~i~~G~~V~rTG~v   71 (72)
T d1fx0a2           4 NTGTVLQVGDGIARIH---GLDEVM-AGELVEFEE-GTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRI   71 (72)
T ss_dssp             TEEEECCCCSSEEEEE---ECTTCC-TTCCEEETT-CCEEEEEEECSSEEEEEECSCGGGCCTTCEEECCCCC
T ss_pred             EEEEEEEecCcEEEEe---CCcccc-cCCEEEeCC-CCeEEEEeccCCEEEEEEECCCCccCCCCEEEecccc
Confidence            5799999999999997   999997 467777764 4689999999999999999999999999999999974

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=98.05  E-value=4.7e-06  Score=72.51  Aligned_cols=73  Identities=18%  Similarity=0.288  Sum_probs=57.2

Q ss_pred             cccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957          205 TEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG  281 (348)
Q Consensus       205 ~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~  281 (348)
                      ..+.-+.||+.-+|-++-  +.+|.-..|+|++|+|||+|+.+++.|.++ ++..++|...-+....+   ++.+.+.+
T Consensus         3 ~~~~ri~TG~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~-~~~~~~~is~e~~~~~~---~~~~~~~~   77 (242)
T d1tf7a2           3 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYEESRAQL---LRNAYSWG   77 (242)
T ss_dssp             CCCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSSCHHHH---HHHHHTTS
T ss_pred             CCCCccCCCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHH-hccccceeeccCCHHHH---HHHHHHcC
Confidence            345568999999999998  889999999999999999999999998765 45567777766655443   44454444

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.93  E-value=1.1e-05  Score=74.04  Aligned_cols=111  Identities=23%  Similarity=0.360  Sum_probs=78.1

Q ss_pred             cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957          207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI  283 (348)
Q Consensus       207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~  283 (348)
                      -+.+.||+..+|.++.   +.+|+=.-|+|++|+|||+|+.+++.+..+ .+..+||+=.=...+.  +   .+++.|+-
T Consensus        38 ~~~i~TG~~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~-~g~~~vyIDtE~~~~~--e---~a~~~GvD  111 (269)
T d1mo6a1          38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHALDP--D---YAKKLGVD  111 (269)
T ss_dssp             SCCBCCSCHHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHH-TTCEEEEEESSCCCCH--H---HHHHHTCC
T ss_pred             cceEccCCHHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhc-CCCEEEEEECCccCCH--H---HHHHhCCC
Confidence            3689999999998886   668899999999999999999999887544 4567777654443332  1   24445642


Q ss_pred             ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                             .++ ++++.. +.  .++      ++.++|.+.. +++..|+|+||++-+.
T Consensus       112 -------~d~-il~~~~-~~--~E~------~~~~~~~l~~-~~~~~liIiDSi~al~  151 (269)
T d1mo6a1         112 -------TDS-LLVSQP-DT--GEQ------ALEIADMLIR-SGALDIVVIDSVAALV  151 (269)
T ss_dssp             -------GGG-CEEECC-SS--HHH------HHHHHHHHHH-TTCEEEEEEECSTTCC
T ss_pred             -------HHH-eEEecC-CC--HHH------HHHHHHHHHh-cCCCCEEEEecccccc
Confidence                   123 344433 21  333      4568888888 6888999999997654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=1.6e-05  Score=72.41  Aligned_cols=109  Identities=17%  Similarity=0.287  Sum_probs=71.9

Q ss_pred             ceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccc
Q 018957          208 QILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK  284 (348)
Q Consensus       208 e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~  284 (348)
                      +++.||+..+|.++-   +-+|+=..|+|++|+|||+|+.+++.+..+ .+..+||+-.=+..+.     +.+++.|+- 
T Consensus        33 ~~isTG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~-~g~~~vyidtE~~~~~-----~~a~~~Gvd-  105 (263)
T d1u94a1          33 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDP-----IYARKLGVD-  105 (263)
T ss_dssp             CEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCH-----HHHHHTTCC-
T ss_pred             CeEccCCHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHc-CCCEEEEEccccccCH-----HHHHHhCCC-
Confidence            689999999998764   338899999999999999999999988654 3455666544333332     225555641 


Q ss_pred             cCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHH
Q 018957          285 LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF  340 (348)
Q Consensus       285 ~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~  340 (348)
                            .++. +++. .+  ..++      .+.+.|.+.. ++.--|+|+||++-+
T Consensus       106 ------~d~v-~~~~-~~--~~E~------~~~~i~~l~~-~~~~~liViDSi~al  144 (263)
T d1u94a1         106 ------IDNL-LCSQ-PD--TGEQ------ALEICDALAR-SGAVDVIVVDSVAAL  144 (263)
T ss_dssp             ------GGGC-EEEC-CS--SHHH------HHHHHHHHHH-HTCCSEEEEECGGGC
T ss_pred             ------HHHE-EEec-CC--CHHH------HHHHHHHHHh-cCCCCEEEEECcccc
Confidence                  1343 3332 22  1333      3445566666 355558889999855

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.62  E-value=7.9e-05  Score=67.99  Aligned_cols=111  Identities=24%  Similarity=0.341  Sum_probs=74.9

Q ss_pred             cceeecceeeeeceeecc---cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957          207 QQILVTGIKVVDLLAPYQ---RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI  283 (348)
Q Consensus       207 ~e~l~TGIkvID~l~Pig---kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~  283 (348)
                      -+.+.||...+|.++-.|   +|.=.-|+|++++|||+|+.+++.+..+ .+..++|.=.=...+.  +   -+++.|+-
T Consensus        35 ~~~i~TGs~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk-~g~~v~yiDtE~~~~~--~---~a~~~Gvd  108 (268)
T d1xp8a1          35 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHALDP--V---YARALGVN  108 (268)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCH--H---HHHHTTCC
T ss_pred             CCeEcCCCHHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHh-CCCEEEEEECCccCCH--H---HHHHhCCC
Confidence            368999999999988644   7778899999999999999999887544 3456677643333332  1   24555642


Q ss_pred             ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957          284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT  341 (348)
Q Consensus       284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A  341 (348)
                             .++. ++ .+.+.  .++      .+.++|.+.. ++..-|+|+||++.+.
T Consensus       109 -------~d~i-~~-~~~~~--~E~------~~~~~~~l~~-~~~~~liIiDSi~al~  148 (268)
T d1xp8a1         109 -------TDEL-LV-SQPDN--GEQ------ALEIMELLVR-SGAIDVVVVDSVAALT  148 (268)
T ss_dssp             -------GGGC-EE-ECCSS--HHH------HHHHHHHHHT-TTCCSEEEEECTTTCC
T ss_pred             -------chhE-EE-EcCCC--HHH------HHHHHHHHHh-cCCCcEEEEecccccc
Confidence                   1333 33 33332  333      3456788877 5777799999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=2.2e-05  Score=67.05  Aligned_cols=133  Identities=20%  Similarity=0.188  Sum_probs=80.5

Q ss_pred             chhhcccccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeeccchhHH
Q 018957          199 AFVEQATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGERTREGN  271 (348)
Q Consensus       199 ~~~~R~~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGER~rEv~  271 (348)
                      ....|..--+.+.|||.-+|.++-  +.+|.-..|.|++|+|||+|+.+++.+.+..     .+..++|.-.-+..... 
T Consensus         5 ~~~~~~~~~~~i~TGi~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-   83 (251)
T d1szpa2           5 DFHMRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV-   83 (251)
T ss_dssp             HHHHHHHSSCEECCSCHHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGG-
T ss_pred             HHHHHhcCCCeecCCCHHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHH-
Confidence            355677777899999999999998  8899999999999999999999998765321     13467777665544332 


Q ss_pred             HHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957          272 DLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV  343 (348)
Q Consensus       272 ~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A  343 (348)
                      .+...+...+.-   ......+..++-....+...       .-...-+.+-. .....++++|++..+...
T Consensus        84 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~ds~~~~~~~  144 (251)
T d1szpa2          84 RLVSIAQRFGLD---PDDALNNVAYARAYNADHQL-------RLLDAAAQMMS-ESRFSLIVVDSVMALYRT  144 (251)
T ss_dssp             GGHHHHHHTCCC---HHHHGGGEEEEECCSTTTHH-------HHHHHTHHHHH-HSCEEEEEEETGGGGGSC
T ss_pred             HHHHHHHhcCCc---hhhhhcceEEEeccchhHHH-------HHHHHHHHHhh-ccccceeeehhhhhhhhh
Confidence            122223333321   11122333333332222211       11111223333 367788999999766543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.60  E-value=2.7e-05  Score=67.25  Aligned_cols=52  Identities=27%  Similarity=0.325  Sum_probs=45.4

Q ss_pred             hhhcccccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          200 FVEQATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       200 ~~~R~~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .+++..--+.+.|||.-+|-++-  +.+|+-..|.|++|+|||+++.+++.|.+
T Consensus         8 ~~~~~~~i~ri~TGi~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2           8 YLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             HHHHHHTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             HHHhhcCCCeECCCCHHHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            34555556789999999999988  88999999999999999999999998765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00011  Score=63.13  Aligned_cols=53  Identities=23%  Similarity=0.173  Sum_probs=46.1

Q ss_pred             hhhcccccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          200 FVEQATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       200 ~~~R~~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      ..+|......+.|||.-+|-++-  +-+|+-+.|.|++|+|||+++.+++.|..+
T Consensus         9 ~~~~~~~~~ri~TGi~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~   63 (258)
T d1v5wa_           9 YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL   63 (258)
T ss_dssp             HHHHGGGCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred             HHHhhcCCceecCCCHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            34555555789999999999997  999999999999999999999999987654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.57  E-value=1.8e-05  Score=67.19  Aligned_cols=64  Identities=20%  Similarity=0.198  Sum_probs=52.7

Q ss_pred             ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHH
Q 018957          208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGN  271 (348)
Q Consensus       208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~  271 (348)
                      +-+.|||.-+|-++-  +.+|.-..|+|++|+|||+|+.+++.+.+..+...+.|+-..+..++..
T Consensus         6 ~~i~TGi~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~   71 (242)
T d1tf7a1           6 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDII   71 (242)
T ss_dssp             CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHH
T ss_pred             CcccCCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHH
Confidence            568899999999987  8899999999999999999999998776655445677777776665543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=1.5e-05  Score=65.66  Aligned_cols=45  Identities=27%  Similarity=0.309  Sum_probs=41.0

Q ss_pred             ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      +-+.||++.+|-++-  +-+|+=..|.|++|+|||+|+.+++.|.+.
T Consensus         3 ~ri~TG~~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~~   49 (242)
T d1n0wa_           3 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQL   49 (242)
T ss_dssp             CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred             CEEcCCCHHHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            357899999999998  889999999999999999999999988654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.23  E-value=4.4e-05  Score=64.87  Aligned_cols=51  Identities=20%  Similarity=0.169  Sum_probs=45.0

Q ss_pred             hcccccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          202 EQATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       202 ~R~~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      ++......+.||+.-+|-++-  +.+|+=..|.|++|+|||+++.+++.|.+.
T Consensus         8 ~~~~~~~~i~TG~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2           8 KQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             HHHTTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             HhhCCCceecCCCHHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            344445789999999999998  999999999999999999999999988764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.96  E-value=0.0003  Score=62.20  Aligned_cols=62  Identities=21%  Similarity=0.238  Sum_probs=47.2

Q ss_pred             ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957          208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE  269 (348)
Q Consensus       208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE  269 (348)
                      ..+.||+..+|-++- +.+|+=+.|.|++|+|||+++.+++.|.+..++.-++|...-+...+
T Consensus        16 ~~i~TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~~~   78 (277)
T d1cr2a_          16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEE   78 (277)
T ss_dssp             CBCCCSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHH
T ss_pred             cccCCCchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccchhh
Confidence            578999999997653 66999999999999999999999998876544443444444444333

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.98  E-value=0.0027  Score=51.50  Aligned_cols=23  Identities=39%  Similarity=0.689  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |++|.|++|+|||||+..++...
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHhcC
Confidence            79999999999999998877644

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.94  E-value=0.0058  Score=54.64  Aligned_cols=42  Identities=19%  Similarity=0.150  Sum_probs=29.8

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHHH---hhcCCEEEEEEeeccc
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNVA---KAHGGFSVFAGVGERT  267 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~a---~~~~~~~V~~~IGER~  267 (348)
                      ..-++|.|..|+|||||+..+.+...   +.+.+.++++-+....
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~   88 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTA   88 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCC
Confidence            34689999999999999998876521   2234667777655443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.91  E-value=0.0051  Score=53.03  Aligned_cols=92  Identities=22%  Similarity=0.200  Sum_probs=65.7

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCC
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNE  303 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsde  303 (348)
                      -||.-+-|.|-+|+|||||+..+.....+. ..+.++.+-|..-|+.      |     -               ..-+-
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~iR~~------l-----~---------------~~l~y   74 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNIRFG------L-----N---------------KDLGF   74 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHHTTT------T-----T---------------TTCCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCceEEEEcchHHHHh------h-----c---------------CCCCC
Confidence            467789999999999999999887654221 2456666666443332      1     0               01123


Q ss_pred             CHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957          304 PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV  343 (348)
Q Consensus       304 p~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A  343 (348)
                      ....|.........+|.++.+ +|..|++-..+.++..+.
T Consensus        75 s~~~r~~~~~r~~~~a~~~~~-~g~~viv~~i~~~~~~R~  113 (208)
T d1m7ga_          75 SEADRNENIRRIAEVAKLFAD-SNSIAITSFISPYRKDRD  113 (208)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH-TTCEEEEECCCCCHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHhc-cCCceeeecccccHHHHH
Confidence            578888889999999999999 899999988888765543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0038  Score=49.82  Aligned_cols=24  Identities=38%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .+.|.|++|+|||||+..++....
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            478999999999999999987654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.86  E-value=0.0021  Score=51.39  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.2

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+|.|+|++|+|||||+..++..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999987753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.85  E-value=0.0034  Score=56.05  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=29.0

Q ss_pred             ceeeee-ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          213 GIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       213 GIkvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +..++| .=+.+-+|+.++|.|++|+|||||+..+.
T Consensus        15 ~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~   50 (240)
T d1g2912          15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA   50 (240)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            345665 45899999999999999999999987553

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0037  Score=54.19  Aligned_cols=24  Identities=33%  Similarity=0.529  Sum_probs=20.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      ...++|++|||||+|+..++....
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHH
Confidence            568999999999999998887664

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.0096  Score=50.85  Aligned_cols=62  Identities=18%  Similarity=0.222  Sum_probs=36.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCC
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP  304 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep  304 (348)
                      -+++.||+|||||+++.-+++..   +.++.++-  |...+...++..-+....          .+++++..-.+.-
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~ide~~~~   98 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASEL---QTNIHVTS--GPVLVKQGDMAAILTSLE----------RGDVLFIDEIHRL   98 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHH---TCCEEEEE--TTTCCSHHHHHHHHHHCC----------TTCEEEEETGGGC
T ss_pred             eEEEECCCCCcHHHHHHHHHhcc---CCCccccc--CcccccHHHHHHHHHhhc----------cCCchHHHHHHHh
Confidence            48999999999999998666543   22444433  333333334333333221          3567777665544

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0038  Score=55.85  Aligned_cols=30  Identities=27%  Similarity=0.340  Sum_probs=25.9

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+-+|++++|+|++|+|||||+.-+.
T Consensus        32 ~isl~i~~Ge~vaivG~sGsGKSTLl~li~   61 (251)
T d1jj7a_          32 GLTFTLRPGEVTALVGPNGSGKSTVAALLQ   61 (251)
T ss_dssp             EEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred             ceEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            455789999999999999999999997443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0046  Score=54.89  Aligned_cols=33  Identities=24%  Similarity=0.382  Sum_probs=27.5

Q ss_pred             eee-eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          215 KVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       215 kvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .++ |.=+.+-+|+.++|.|++|+|||||+..+.
T Consensus        14 ~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~   47 (232)
T d2awna2          14 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA   47 (232)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            344 456889999999999999999999987543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.0045  Score=56.26  Aligned_cols=30  Identities=27%  Similarity=0.560  Sum_probs=26.0

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+-+|++++|.|++|+|||||+..+.
T Consensus        54 ~isl~i~~Ge~vaivG~nGsGKSTLl~~i~   83 (281)
T d1r0wa_          54 NINLNIEKGEMLAITGSTGSGKTSLLMLIL   83 (281)
T ss_dssp             EEEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            445789999999999999999999997554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.38  E-value=0.005  Score=54.56  Aligned_cols=34  Identities=18%  Similarity=0.397  Sum_probs=27.1

Q ss_pred             eeee-ceeecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          215 KVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       215 kvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +++| .=+.+-+|+.++|+|++|+|||||+. ++..
T Consensus        19 ~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~-~i~g   53 (230)
T d1l2ta_          19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGC   53 (230)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHH-HHTT
T ss_pred             EEEeceEEEEcCCCEEEEECCCCCCcchhhH-hccC
Confidence            3443 34789999999999999999999987 4433

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.005  Score=54.80  Aligned_cols=30  Identities=27%  Similarity=0.499  Sum_probs=25.8

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+-+|++++|+|++|+|||||+.-+.
T Consensus        21 ~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~   50 (241)
T d2pmka1          21 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQ   50 (241)
T ss_dssp             EEEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999999987543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.29  E-value=0.0044  Score=53.38  Aligned_cols=29  Identities=24%  Similarity=0.556  Sum_probs=25.5

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+-+|+.++|.|+.|+|||||+..+.
T Consensus        20 is~~i~~Gei~~l~G~NGsGKSTLl~~i~   48 (200)
T d1sgwa_          20 ITMTIEKGNVVNFHGPNGIGKTTLLKTIS   48 (200)
T ss_dssp             EEEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            44689999999999999999999997554

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.28  E-value=0.0059  Score=54.44  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=28.3

Q ss_pred             ceeeee-ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          213 GIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       213 GIkvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +..++| .=+.+-+|+.++|+|++|+|||||+..+.
T Consensus        18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~   53 (239)
T d1v43a3          18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA   53 (239)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHH
Confidence            344554 44789999999999999999999997543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.24  E-value=0.0057  Score=54.35  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=25.7

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+-+|++++|.|++|+|||||+.-+.
T Consensus        20 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~   49 (242)
T d1mv5a_          20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLE   49 (242)
T ss_dssp             EEEEEECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            344789999999999999999999987543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.20  E-value=0.0056  Score=54.77  Aligned_cols=29  Identities=21%  Similarity=0.385  Sum_probs=24.9

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+-+|++++|+|++|+|||||+.-+.
T Consensus        34 isl~i~~Ge~iaivG~sGsGKSTLl~ll~   62 (253)
T d3b60a1          34 INLKIPAGKTVALVGRSGSGKSTIASLIT   62 (253)
T ss_dssp             EEEEECTTCEEEEEECTTSSHHHHHHHHT
T ss_pred             eEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence            34689999999999999999999986443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.13  E-value=0.012  Score=46.69  Aligned_cols=26  Identities=27%  Similarity=0.224  Sum_probs=23.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +|.-+.|.|.+|+||||++..+....
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            68889999999999999999888654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.044  Score=47.64  Aligned_cols=40  Identities=30%  Similarity=0.299  Sum_probs=27.1

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccch
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR  268 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~r  268 (348)
                      +.++|+.|+||||.+..++....+.+..+.++..=-.|.-
T Consensus        12 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~g   51 (211)
T d2qy9a2          12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA   51 (211)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccccc
Confidence            6778999999999999998766543333444444334443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.12  E-value=0.0065  Score=54.54  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=27.5

Q ss_pred             eeeeece-eecccCceeEeecCCCCcHHHHHHHH
Q 018957          214 IKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       214 IkvID~l-~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      ..++|-+ +.+.+|+.++|+|++|+|||||+..+
T Consensus        15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i   48 (258)
T d1b0ua_          15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCI   48 (258)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHH
Confidence            4455443 89999999999999999999999754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.012  Score=46.80  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      ++|.|.+|+|||||+..++.+..
T Consensus         5 i~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999997654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.08  E-value=0.0061  Score=48.55  Aligned_cols=22  Identities=50%  Similarity=0.560  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.|.|++|+||||++..++..
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999988764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.06  E-value=0.052  Score=46.91  Aligned_cols=117  Identities=21%  Similarity=0.183  Sum_probs=60.4

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee-ccchhHHHH--HHHHHHcCccccCcc-c-----------
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG-ERTREGNDL--YREMIESGVIKLGDK-Q-----------  289 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG-ER~rEv~~~--~~e~~~~~v~~~~~~-~-----------  289 (348)
                      +++-+.++|+.|+||||.+..+++...+ ++.-+.++.+. .|.--+..+  |-+..+-.+...... +           
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~-~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~   83 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQA   83 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHH
Confidence            6778899999999999999999876543 33323333333 344333222  222211111100000 0           


Q ss_pred             --CCCeeEEEEecCCCCHHHHHHHHHHH-HHHHHHhhh-cCCCcEEEEEechhHHHh
Q 018957          290 --ADSKCALVYGQMNEPPGARARVGLTG-LTVAEHFRD-AEGQDVLLFIDNIFRFTQ  342 (348)
Q Consensus       290 --~~~rtvvV~~tsdep~~~r~~a~~~a-~tiAEyfrd-~~G~dVLli~DslTR~A~  342 (348)
                        ..++-++++-|+-.++.......... +.-+....+ ++-..++|++|..+...+
T Consensus        84 ~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~  140 (207)
T d1okkd2          84 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG  140 (207)
T ss_dssp             HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH
T ss_pred             HHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchH
Confidence              01346788888876665443333221 111111122 134678999998876543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.0071  Score=53.87  Aligned_cols=29  Identities=28%  Similarity=0.474  Sum_probs=25.3

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      |.=+.+-+|..++|+|++|+|||||+..+
T Consensus        23 ~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i   51 (240)
T d3dhwc1          23 NVSLHVPAGQIYGVIGASGAGKSTLIRCV   51 (240)
T ss_dssp             EEEEEECSSCEEEEEESTTSSHHHHHHHH
T ss_pred             ceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            44478999999999999999999998644

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.006  Score=47.67  Aligned_cols=23  Identities=39%  Similarity=0.556  Sum_probs=20.7

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|++|+|++++|||+|+..++.+
T Consensus         1 ~KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           1 GKLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            69999999999999999987754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.97  E-value=0.0049  Score=55.10  Aligned_cols=34  Identities=21%  Similarity=0.511  Sum_probs=28.3

Q ss_pred             eeee-eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          214 IKVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       214 IkvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +.++ |.=+.+-+|+.++|+|++|+|||||+..+.
T Consensus        18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~   52 (242)
T d1oxxk2          18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIA   52 (242)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHH
Confidence            4555 455899999999999999999999997543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.94  E-value=0.0063  Score=53.88  Aligned_cols=30  Identities=23%  Similarity=0.416  Sum_probs=26.2

Q ss_pred             eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.+-+|+.++|+|++|+|||||+..+.
T Consensus        18 ~vs~~i~~Ge~~~liGpsGaGKSTll~~l~   47 (229)
T d3d31a2          18 NLSLKVESGEYFVILGPTGAGKTLFLELIA   47 (229)
T ss_dssp             EEEEEECTTCEEEEECCCTHHHHHHHHHHH
T ss_pred             eeEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence            355889999999999999999999997553

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=94.85  E-value=0.07  Score=46.21  Aligned_cols=45  Identities=20%  Similarity=-0.000  Sum_probs=24.1

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      -.-+.++|++|+||||.+..++....+....+.++..=-.|.-.+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~   56 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAAL   56 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchh
Confidence            344778899999999999999876543322333333322444443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.85  E-value=0.0094  Score=47.65  Aligned_cols=25  Identities=28%  Similarity=0.403  Sum_probs=21.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ||=+|.|+|++|+||||++..+...
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            4567999999999999999877653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.80  E-value=0.0076  Score=54.02  Aligned_cols=28  Identities=25%  Similarity=0.464  Sum_probs=24.6

Q ss_pred             ceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       219 ~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      .=+.+-+|++++|.|++|+|||||+.-+
T Consensus        37 isl~i~~Ge~vaivG~sGsGKSTLl~ll   64 (255)
T d2hyda1          37 INLSIEKGETVAFVGMSGGGKSTLINLI   64 (255)
T ss_dssp             EEEEECTTCEEEEECSTTSSHHHHHTTT
T ss_pred             eEEEEcCCCEEEEECCCCCcHHHHHHHH
Confidence            4478999999999999999999998643

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.63  E-value=0.037  Score=52.17  Aligned_cols=84  Identities=24%  Similarity=0.309  Sum_probs=39.4

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR  308 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r  308 (348)
                      ..++|++|||||+|+..++..+...                           .+.    +....+.++....+.--++.+
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i~~~---------------------------~vp----~~l~~~~i~~ld~~~l~ag~~   94 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRIVKG---------------------------DVP----EGLKGKRIVSLQMGSLLAGAK   94 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHHHHT---------------------------CSC----TTSTTCEEEEECC--------
T ss_pred             CeEECCCCCCHHHHHHHHHHHHHhC---------------------------CCC----HHHcCceEEEeeHhhhhcccC
Confidence            6788999999999998877655331                           111    012234455555555555555


Q ss_pred             HHHHHHH--HHHHHHhhhcCCCcEEEEEechhHHHhhh
Q 018957          309 ARVGLTG--LTVAEHFRDAEGQDVLLFIDNIFRFTQVS  344 (348)
Q Consensus       309 ~~a~~~a--~tiAEyfrd~~G~dVLli~DslTR~A~A~  344 (348)
                      |+.-+-.  ..+-+.... ...+++||+|++..+..|+
T Consensus        95 ~~g~~e~r~~~i~~~~~~-~~~~~ilfide~h~l~~~g  131 (387)
T d1qvra2          95 YRGEFEERLKAVIQEVVQ-SQGEVILFIDELHTVVGAG  131 (387)
T ss_dssp             ---CHHHHHHHHHHHHHT-TCSSEEEEECCC-------
T ss_pred             cchhHHHHHHHHHHHhcc-CCCceEEEeccHHHHhcCC
Confidence            5544421  233333443 3447999999998886654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.62  E-value=0.0098  Score=46.93  Aligned_cols=21  Identities=33%  Similarity=0.387  Sum_probs=18.4

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.|.|++|+||||++..+...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999888653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.54  E-value=0.051  Score=46.16  Aligned_cols=73  Identities=18%  Similarity=0.249  Sum_probs=40.1

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR  308 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r  308 (348)
                      +++.||+|+|||+++.-+++..     .+..+..-|.-.+........+. ..        ...+++++.-..+.-....
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~i~~iDe~~~~~~~~  103 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHEL-----GVNLRVTSGPAIEKPGDLAAILA-NS--------LEEGDILFIDEIHRLSRQA  103 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH-----TCCEEEEETTTCCSHHHHHHHHH-TT--------CCTTCEEEEETGGGCCHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh-----CCCeEeccCCccccchhhHHHHH-hh--------ccCCCeeeeecccccchhH
Confidence            6899999999999997665432     23333344444444433222222 21        1235677777766554444


Q ss_pred             HHHHHHH
Q 018957          309 ARVGLTG  315 (348)
Q Consensus       309 ~~a~~~a  315 (348)
                      .-..+.+
T Consensus       104 ~~~l~~~  110 (239)
T d1ixsb2         104 EEHLYPA  110 (239)
T ss_dssp             HHHHHHH
T ss_pred             HHhhhhh
Confidence            3333333

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.54  E-value=0.011  Score=52.32  Aligned_cols=34  Identities=26%  Similarity=0.475  Sum_probs=27.5

Q ss_pred             ceeeee-ceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          213 GIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       213 GIkvID-~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      +.+++| .=+.+.+|+-.+|+|++|+|||||+..+
T Consensus        18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i   52 (240)
T d1ji0a_          18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAI   52 (240)
T ss_dssp             TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHH
Confidence            344443 4479999999999999999999998644

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.53  E-value=0.012  Score=48.65  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=21.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ||=|+.|+|++|+||||++..++..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHH
Confidence            6779999999999999999877643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.034  Score=48.06  Aligned_cols=34  Identities=26%  Similarity=0.425  Sum_probs=28.8

Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      +|+.|+|   |+-..|+|++|+|||+|+.+++.+.+.
T Consensus        22 li~G~~p---g~~~~i~G~~G~GKS~l~l~la~~ia~   55 (274)
T d1nlfa_          22 VLPNMVA---GTVGALVSPGGAGKSMLALQLAAQIAG   55 (274)
T ss_dssp             EETTEET---TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             HhCCccC---CcEEEEEeCCCCCHHHHHHHHHHHHHc
Confidence            4667654   679999999999999999999988764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.44  E-value=0.041  Score=46.42  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=22.1

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ...-+.|.|++|+|||+++..+.++.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34678999999999999998877665

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.014  Score=47.51  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=23.0

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ||..|.|.|.+|+|||||+..+....
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            78889999999999999999887654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.012  Score=45.76  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=18.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .|-|.|++|+||||+++.++..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3678899999999999988764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.41  E-value=0.012  Score=47.73  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=19.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ||.|+|++|+||||++..++..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999876553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.33  E-value=0.15  Score=44.10  Aligned_cols=47  Identities=19%  Similarity=0.040  Sum_probs=30.0

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG  270 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv  270 (348)
                      .+-.-+.++|+.|+||||.+..++....+.+..+.++..=-.|.--+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~   55 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAI   55 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchh
Confidence            34456788999999999999999876644332333333333444443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.31  E-value=0.014  Score=45.74  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |+.|.|++|||||+|+..++.+.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78899999999999999887653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.23  E-value=0.024  Score=45.73  Aligned_cols=24  Identities=21%  Similarity=0.302  Sum_probs=21.0

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHh
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      ++|.|.+|+|||||+..++....+
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHh
Confidence            589999999999999999987643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.012  Score=51.56  Aligned_cols=28  Identities=25%  Similarity=0.455  Sum_probs=24.4

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      =+.+-+|+-++|+|++|+|||||+..+.
T Consensus        19 sl~I~~Gei~~iiG~nGaGKSTLl~~l~   46 (231)
T d1l7vc_          19 SGEVRAGEILHLVGPNGAGKSTLLARMA   46 (231)
T ss_dssp             EEEEETTCEEECBCCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence            3578999999999999999999986554

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.19  E-value=0.014  Score=45.84  Aligned_cols=20  Identities=35%  Similarity=0.454  Sum_probs=17.4

Q ss_pred             eEeecCCCCcHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.|.|++|+|||||+..++.
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56899999999999988764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.18  E-value=0.014  Score=48.21  Aligned_cols=25  Identities=20%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |.+.+.|+|++|+||||++..++..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999877653

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.13  E-value=0.24  Score=42.42  Aligned_cols=25  Identities=28%  Similarity=0.151  Sum_probs=21.0

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhh
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKA  253 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~  253 (348)
                      +.++|+.|+||||.+..++....+.
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~~~   37 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYKGK   37 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            5778999999999999998776543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.14  Score=46.99  Aligned_cols=39  Identities=18%  Similarity=0.247  Sum_probs=29.3

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEE
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA  261 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~  261 (348)
                      -++.-++||-|++|+|||||+-.++.........+.|++
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavla   89 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA   89 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeec
Confidence            468899999999999999999999876543212344544

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.016  Score=52.21  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=22.0

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVAK  252 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a~  252 (348)
                      ..+.++|++|||||+|+..++.....
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            46889999999999999988876643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.86  E-value=0.011  Score=50.14  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .++.+.|.|++|+|||+|+.+++++.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            46778999999999999999887653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.81  E-value=0.015  Score=45.68  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999988764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.76  E-value=0.018  Score=51.25  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=28.4

Q ss_pred             ceeee-eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          213 GIKVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       213 GIkvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.+++ |.=+.+.+|+-.+|+|++|+|||||+..+.
T Consensus        16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~   51 (254)
T d1g6ha_          16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT   51 (254)
T ss_dssp             TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred             CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHH
Confidence            44555 455789999999999999999999997543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.67  E-value=0.021  Score=46.75  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ||.|+|++|+||||++..++..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999877654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.64  E-value=0.032  Score=44.39  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.3

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.|.|++|+||||++..+....
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999887654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.63  E-value=0.042  Score=50.45  Aligned_cols=28  Identities=32%  Similarity=0.443  Sum_probs=24.7

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      ++.-++||-|++|+|||||+..++....
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~   76 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLT   76 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence            5778999999999999999999987643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.59  E-value=0.035  Score=44.89  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=19.9

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      +||-|++|+|||||+..+.....
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            78999999999999998876543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.58  E-value=0.023  Score=50.16  Aligned_cols=32  Identities=25%  Similarity=0.478  Sum_probs=26.1

Q ss_pred             eeee-ceeecccCceeEeecCCCCcHHHHHHHH
Q 018957          215 KVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       215 kvID-~l~PigkGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      +++| .=+.+-+|+-.||+|++|+|||||+.-+
T Consensus        16 ~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l   48 (238)
T d1vpla_          16 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRII   48 (238)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH
T ss_pred             EEEccceeEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            3443 3368999999999999999999998644

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.017  Score=46.56  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            8999999999999999988764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.019  Score=46.32  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.33  E-value=0.033  Score=49.43  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=24.9

Q ss_pred             eeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .+|.=+.++ |+.++|+|++|+|||||+..+.
T Consensus        15 ~~~vs~~~~-~e~~~liGpnGaGKSTll~~i~   45 (240)
T d2onka1          15 RLNVDFEMG-RDYCVLLGPTGAGKSVFLELIA   45 (240)
T ss_dssp             EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEEEeC-CEEEEEECCCCChHHHHHHHHH
Confidence            357667776 4699999999999999997554

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.02  Score=46.15  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=20.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.02  Score=46.56  Aligned_cols=22  Identities=32%  Similarity=0.699  Sum_probs=20.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            7899999999999999988765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.02  Score=46.08  Aligned_cols=22  Identities=32%  Similarity=0.733  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.24  E-value=0.029  Score=46.90  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .|.=|+.|+|++|+||||++..++.+
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            35568999999999999999877653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.24  E-value=0.027  Score=46.14  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ||.|+|++|+||||++..++..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999877654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.22  E-value=0.021  Score=45.52  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=17.6

Q ss_pred             CceeEeecCCCCcHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      |.=+.|.|++|+||||++..+.
T Consensus         4 g~iI~l~G~~GsGKSTia~~La   25 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALA   25 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3336788999999999987664

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.17  E-value=0.023  Score=46.82  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=19.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.|.|++|+||||++..+..+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999876654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.022  Score=46.07  Aligned_cols=22  Identities=32%  Similarity=0.703  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999998864

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.16  E-value=0.022  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6889999999999999988864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.021  Score=45.76  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.02  Score=46.11  Aligned_cols=22  Identities=45%  Similarity=0.813  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.11  E-value=0.023  Score=45.48  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=20.3

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999998875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.027  Score=45.93  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|+||||++..++..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999877654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.10  E-value=0.023  Score=45.86  Aligned_cols=22  Identities=32%  Similarity=0.770  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999998764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.08  E-value=0.1  Score=42.92  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=17.6

Q ss_pred             ceeEeecCCCCcHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii  247 (348)
                      .=+.+.|.+|+||||++.++.
T Consensus        15 ~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            346789999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.023  Score=46.07  Aligned_cols=22  Identities=41%  Similarity=0.922  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999998865

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.06  E-value=0.023  Score=45.89  Aligned_cols=22  Identities=41%  Similarity=0.764  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            6899999999999999988753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.026  Score=45.43  Aligned_cols=22  Identities=32%  Similarity=0.902  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999888764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.04  E-value=0.043  Score=48.27  Aligned_cols=20  Identities=40%  Similarity=0.522  Sum_probs=18.2

Q ss_pred             eEeecCCCCcHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++.|++|||||+|+..+++
T Consensus        45 iLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEecCCCCChhHHHHHHHH
Confidence            79999999999999987775

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.98  E-value=0.024  Score=45.71  Aligned_cols=22  Identities=36%  Similarity=0.758  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.022  Score=46.37  Aligned_cols=22  Identities=41%  Similarity=0.832  Sum_probs=20.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988864

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.94  E-value=0.037  Score=42.09  Aligned_cols=28  Identities=25%  Similarity=0.145  Sum_probs=22.3

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +-+||...|.++.|+|||..+...+.+.
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~   31 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAE   31 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHH
Confidence            5689999999999999997765544433

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.88  E-value=0.024  Score=45.22  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=21.5

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      -|--|+.|+|.+|+|||+|+..+..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4556999999999999999988754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.032  Score=45.84  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=18.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.|+||+|+||||++..++..
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999877653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.024  Score=45.91  Aligned_cols=22  Identities=36%  Similarity=0.824  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7999999999999999988764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.84  E-value=0.033  Score=45.66  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.|+|++|+||||++..++.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999987754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.038  Score=43.88  Aligned_cols=25  Identities=24%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+.=+.|.|++|+||||++..+..+
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3455678999999999999988764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.78  E-value=0.069  Score=45.02  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=18.8

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.+.|++|+|||+++.-+++..
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            7899999999999998776543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.027  Score=46.20  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            7899999999999999988865

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.73  E-value=0.032  Score=46.19  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |.|.||+|+||+|++..++.+.
T Consensus         6 I~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999998887654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.72  E-value=0.031  Score=46.28  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=21.2

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .++.-+.|+|++|+||||++..++.
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4567789999999999999987764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.71  E-value=0.038  Score=47.08  Aligned_cols=26  Identities=23%  Similarity=0.245  Sum_probs=21.0

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++..-+.|+||+|+|||+++..+++.
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34456899999999999999877654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.028  Score=45.58  Aligned_cols=22  Identities=41%  Similarity=0.718  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|+++||||+|+..++.+
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999988864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.64  E-value=0.036  Score=46.91  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      -+.|.|++|+|||+++..+++..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            48999999999999998777644

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.029  Score=45.21  Aligned_cols=22  Identities=32%  Similarity=0.732  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999998865

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.028  Score=45.49  Aligned_cols=22  Identities=50%  Similarity=0.741  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.50  E-value=0.032  Score=47.63  Aligned_cols=21  Identities=33%  Similarity=0.382  Sum_probs=18.5

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +++.|++|||||+|+..++..
T Consensus        35 ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999877654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.49  E-value=0.031  Score=45.18  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|+|||+|+..++.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            6899999999999999988765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.48  E-value=0.1  Score=45.92  Aligned_cols=21  Identities=33%  Similarity=0.640  Sum_probs=18.5

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +++.|++|||||+|+..++..
T Consensus        44 iLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          44 VLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             EEEBCCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcchhHHHHHHHH
Confidence            899999999999999877653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.029  Score=45.66  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.43  E-value=0.038  Score=45.19  Aligned_cols=22  Identities=41%  Similarity=0.749  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|.+|||||+|+..++.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999988754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.40  E-value=0.038  Score=45.65  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=18.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .+.|+|++|+||||++..++.
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999987765

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.38  E-value=0.07  Score=43.56  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.3

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.+.|.+|+|||||+..+++..
T Consensus         5 i~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5788999999999999998755

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.029  Score=46.19  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            7899999999999999988765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.23  E-value=0.035  Score=44.99  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            8999999999999999988754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.14  E-value=0.042  Score=49.61  Aligned_cols=25  Identities=32%  Similarity=0.388  Sum_probs=21.2

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.-+++.||+|||||.|+..+++.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            4566899999999999999887764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.036  Score=45.00  Aligned_cols=22  Identities=41%  Similarity=0.700  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7999999999999999888764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.10  E-value=0.034  Score=44.97  Aligned_cols=22  Identities=36%  Similarity=0.679  Sum_probs=20.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999988764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.10  E-value=0.041  Score=47.86  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=19.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      -+.|+|+||+|||+++.+.+....
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHH
Confidence            368999999999998877655443

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.037  Score=44.64  Aligned_cols=22  Identities=41%  Similarity=0.732  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|+++||||+|+..++.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7999999999999999988764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=91.98  E-value=0.047  Score=43.03  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=17.7

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.|-|++|+||||++..+...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566799999999999887653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.97  E-value=0.039  Score=44.21  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++++|||+|+..+..+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999888654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.044  Score=44.73  Aligned_cols=21  Identities=33%  Similarity=0.621  Sum_probs=18.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.|+|++|||||+|+..++.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            689999999999999988764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.92  E-value=0.087  Score=41.88  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=17.7

Q ss_pred             EeecCCCCcHHHHHHHHHHHHH
Q 018957          230 GLFGGAGVGKTVLIMELINNVA  251 (348)
Q Consensus       230 gIfg~~GvGKT~L~~~ii~n~a  251 (348)
                      .|-|.+|+||||++..+.....
T Consensus         5 vi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           5 IVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHH
Confidence            3569999999999988876553

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.80  E-value=0.056  Score=44.25  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             CceeEeecCCCCcHHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |.=+.|.||+|+|||||+..++..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            666788999999999999887754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=91.80  E-value=0.045  Score=43.60  Aligned_cols=21  Identities=19%  Similarity=0.407  Sum_probs=18.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.|+|++|+|||+|+..+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            789999999999999987754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.65  E-value=0.057  Score=43.50  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|+.|||||+|+.++..+
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            7899999999999999988754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.05  Score=43.89  Aligned_cols=21  Identities=38%  Similarity=0.531  Sum_probs=18.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.++|++|||||+|+..+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            789999999999999987764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.63  E-value=0.041  Score=45.19  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999988875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=91.54  E-value=0.055  Score=43.81  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=19.4

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.+-|+|++|+||||++..++..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHH
Confidence            45778999999999999888754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.38  E-value=0.13  Score=45.00  Aligned_cols=20  Identities=40%  Similarity=0.664  Sum_probs=17.6

Q ss_pred             eEeecCCCCcHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++.||+|||||+++..++.
T Consensus        41 iLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             eEEecCCCCCchHHHHHHHH
Confidence            89999999999999876654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.36  E-value=0.049  Score=44.08  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -|+.++|++|+|||+|+..++.+
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            37899999999999999988764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=91.33  E-value=0.18  Score=44.45  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=18.5

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +++.||+|||||+++..+++.
T Consensus        48 iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          48 VLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEeeCCCCCCccHHHHHHHHH
Confidence            789999999999999877753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.31  E-value=0.053  Score=43.29  Aligned_cols=26  Identities=23%  Similarity=0.371  Sum_probs=22.1

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .|-=|+.|+|.+|+|||+|+..+..+
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            45568999999999999999887654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.25  E-value=0.058  Score=43.15  Aligned_cols=22  Identities=41%  Similarity=0.816  Sum_probs=19.4

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|+|||+|+..++.+
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6889999999999999887753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.05  Score=44.77  Aligned_cols=23  Identities=30%  Similarity=0.605  Sum_probs=20.5

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -|+.++|++|||||+|+..++.+
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            38999999999999999988764

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.22  E-value=0.06  Score=43.35  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=18.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+-+.|.+|+||||++..++..
T Consensus         3 ~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5778899999999999877654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.047  Score=45.00  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=20.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |+.++|++|||||+|+..++.+.
T Consensus         5 KvvllG~~~vGKTSli~r~~~~~   27 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTNK   27 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            78999999999999999888653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.16  E-value=0.063  Score=43.42  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |+.++|+.|||||+|+..+..+.
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999987653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.054  Score=44.02  Aligned_cols=22  Identities=36%  Similarity=0.751  Sum_probs=19.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|+|||+|+..+..+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=91.06  E-value=0.064  Score=43.30  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=18.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .|.|+|.+|+||||++..++..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            3778999999999999877654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.96  E-value=0.071  Score=44.36  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=18.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|.|-||+|+||||++..++..
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4678899999999999888764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.90  E-value=0.065  Score=46.92  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=19.0

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+++.||+|||||+|+..+++.
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            4899999999999999877653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.90  E-value=0.05  Score=46.13  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=18.0

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.|.|++|||||+++..+++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            3456999999999999887654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.85  E-value=0.063  Score=43.73  Aligned_cols=19  Identities=32%  Similarity=0.593  Sum_probs=18.1

Q ss_pred             eeEeecCCCCcHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~i  246 (348)
                      |+.|+|++|+|||+|+..+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999988

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.84  E-value=0.069  Score=44.57  Aligned_cols=22  Identities=27%  Similarity=0.604  Sum_probs=19.2

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +||-|++|+|||||+..+....
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999998887654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.84  E-value=0.057  Score=45.79  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=20.1

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.|.|++|+|||+++..++++.
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            47999999999999999888753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.78  E-value=0.038  Score=44.76  Aligned_cols=23  Identities=35%  Similarity=0.677  Sum_probs=9.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |+.|+|.+|||||+|+..++.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~~   30 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSEDA   30 (173)
T ss_dssp             EEEEECCCCC-------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            79999999999999998887643

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.78  E-value=0.054  Score=44.86  Aligned_cols=22  Identities=36%  Similarity=0.767  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.|+|++|||||+|+..++.+
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            6899999999999999988754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=90.68  E-value=0.062  Score=43.12  Aligned_cols=21  Identities=38%  Similarity=0.543  Sum_probs=18.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.++|++|+|||+|+..++.
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            688999999999999987754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.072  Score=43.16  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=18.6

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.++|++|||||+|+..+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            789999999999999987754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=90.55  E-value=0.11  Score=43.48  Aligned_cols=22  Identities=36%  Similarity=0.446  Sum_probs=19.2

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.|.|..|+|||||+..+..+.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            5799999999999999988654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.036  Score=44.98  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=18.7

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++|||||+|+..++.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            7899999999999999887765

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.42  E-value=0.83  Score=37.27  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .+.|+|++++|||+|+..+..+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.078  Score=41.77  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.1

Q ss_pred             CceeEeecCCCCcHHHHHHHHHH
Q 018957          226 GGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       226 GQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |=|++|+|.+++|||+|+..++.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45899999999999999988763

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.36  E-value=0.12  Score=49.42  Aligned_cols=48  Identities=27%  Similarity=0.396  Sum_probs=31.0

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEE-------EEeeccchhHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF-------AGVGERTREGNDLYREMIE  279 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~-------~~IGER~rEv~~~~~e~~~  279 (348)
                      ..++++||+|||||-|+..+++- .    +++++       .-+|=-++.|..++++|.+
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~-l----~VPFv~~daT~fTeaGYvG~DVesii~~L~~  104 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKL-A----NAPFIKVEATKFTEVGYVGKEVDSIIRDLTD  104 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH-T----TCCEEEEEGGGGC----CCCCTHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHHH-h----CCCEEEeecceeeecceeecchhHHHHHHHH
Confidence            47999999999999999877642 1    33322       2345555667777777754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.21  E-value=0.14  Score=43.61  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=24.2

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEe
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV  263 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~I  263 (348)
                      +.|.|++|+|||.|++.+.+...+ ....++|.-.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~-~~~~~~~~~~   72 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKK-RGYRVIYSSA   72 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcc-CccceEEech
Confidence            589999999999999988765533 2334455533

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.06  E-value=0.088  Score=43.75  Aligned_cols=21  Identities=33%  Similarity=0.608  Sum_probs=18.3

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |-|.||+|+|||||+..++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999888764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.95  E-value=0.12  Score=47.46  Aligned_cols=26  Identities=31%  Similarity=0.392  Sum_probs=21.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHHHhh
Q 018957          228 KIGLFGGAGVGKTVLIMELINNVAKA  253 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~a~~  253 (348)
                      -+.|+|++|+|||+++..++.+..+.
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~~~~   77 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTGLLR   77 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHHHhC
Confidence            48999999999999998888776543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.88  E-value=0.094  Score=43.29  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=18.3

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |.|.||+|+|||||+..++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999988754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.84  E-value=0.094  Score=43.91  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=19.3

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +.|.||+|+|||+++.-+++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999998887654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.78  E-value=0.05  Score=47.74  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=26.2

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +|.|..+-+|+...+.|.+|||||||+-.+.
T Consensus        86 ~~~L~~~l~~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          86 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             HHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred             HhhHHHHhcCCeEEEECCCCCCHHHHHHhhc
Confidence            5677777789999999999999999986553

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.47  E-value=0.12  Score=43.96  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .|+.|.|++|+|||+|+.++..+
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999999999988654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.41  E-value=0.1  Score=42.09  Aligned_cols=21  Identities=33%  Similarity=0.681  Sum_probs=18.9

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |++|+|.+++|||||+..+..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            799999999999999977764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.01  E-value=0.11  Score=45.65  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=18.5

Q ss_pred             ceeEeecCCCCcHHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +.+.|.|++|+|||+.+.+-+.+
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~   47 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAY   47 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHHH
Confidence            45899999999999988765443

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=88.78  E-value=0.068  Score=43.12  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |+.++|++++|||+|+..++.+
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999887643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.72  E-value=0.12  Score=43.17  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=19.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.+.|++|+|||+++..+++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHh
Confidence            37999999999999998887653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=88.59  E-value=0.13  Score=41.18  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=18.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +++|+|.+++|||+|+..++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998863

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=88.35  E-value=0.16  Score=43.10  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +|.=+.|.||+|+|||||+..++..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhh
Confidence            3566778999999999999888754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=0.14  Score=42.28  Aligned_cols=21  Identities=33%  Similarity=0.582  Sum_probs=18.2

Q ss_pred             eEeecCCCCcHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      +-|+||+|+|||||+..++..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            678999999999999888753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=88.24  E-value=0.087  Score=42.71  Aligned_cols=29  Identities=28%  Similarity=0.326  Sum_probs=22.9

Q ss_pred             eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957          220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      |+.-.|-=|+.++|.+|+|||+|+..+..
T Consensus        11 l~~~~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          11 LWGSNKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             GTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             HhCCCceEEEEEECCCCCCHHHHHHHHhc
Confidence            34445556899999999999999987654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=88.13  E-value=0.11  Score=41.14  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.1

Q ss_pred             cCceeEeecCCCCcHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~i  246 (348)
                      +.-|++|+|.+++|||+|+..+
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L   36 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTL   36 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHH
Confidence            4667999999999999998655

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.81  E-value=0.059  Score=47.47  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=26.1

Q ss_pred             eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957          217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii  247 (348)
                      +|.|...-+|+...+.|.+|||||||+-.++
T Consensus        88 l~~L~~~l~~~~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          88 LADIIPHFQDKTTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             CTTTGGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred             HHHHHHhhccceEEEECCCCccHHHHHHhhc
Confidence            4667777799999999999999999986554

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.75  E-value=0.14  Score=41.88  Aligned_cols=22  Identities=32%  Similarity=0.382  Sum_probs=19.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ++.|+|.+++|||+|+-.+..+
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999888754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.43  E-value=0.15  Score=40.83  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=18.5

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .++|+|.+++|||||+..++.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999987764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.40  E-value=0.17  Score=40.79  Aligned_cols=22  Identities=32%  Similarity=0.658  Sum_probs=19.4

Q ss_pred             ceeEeecCCCCcHHHHHHHHHH
Q 018957          227 GKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       227 Qr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      +.++|+|.+|+|||+|+..++.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3699999999999999988764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.39  E-value=0.11  Score=42.01  Aligned_cols=20  Identities=35%  Similarity=0.577  Sum_probs=17.5

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      .++|+|.+++|||+|+..+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSE
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            58999999999999987664

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.37  E-value=1.6  Score=36.34  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.2

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      -+++.|++|+|||+++..+++.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            4889999999999999988764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=87.08  E-value=0.16  Score=42.41  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=22.9

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..|+-++|.|++|.|||+++.+++.+
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            45778999999999999999998865

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=86.88  E-value=0.17  Score=41.40  Aligned_cols=20  Identities=45%  Similarity=0.670  Sum_probs=18.5

Q ss_pred             eeEeecCCCCcHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii  247 (348)
                      +++|.|.+|+|||||+..+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            69999999999999998776

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.86  E-value=0.071  Score=41.95  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=19.4

Q ss_pred             eeEeecCCCCcHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      |++++|.+++|||+|+..+...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999887643

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.76  E-value=0.19  Score=39.97  Aligned_cols=20  Identities=35%  Similarity=0.690  Sum_probs=18.3

Q ss_pred             eEeecCCCCcHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~  248 (348)
                      ++|+|.+++|||+|+-.++.
T Consensus         8 I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999988874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.18  E-value=0.14  Score=41.28  Aligned_cols=19  Identities=32%  Similarity=0.628  Sum_probs=17.2

Q ss_pred             eEeecCCCCcHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELI  247 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii  247 (348)
                      ++|+|.+++|||||+..+.
T Consensus         4 VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7999999999999997764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.43  E-value=0.9  Score=37.98  Aligned_cols=54  Identities=17%  Similarity=0.052  Sum_probs=37.4

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHHHh---hcCCEEEEEEeec--cchhHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNVAK---AHGGFSVFAGVGE--RTREGNDLYREM  277 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~---~~~~~~V~~~IGE--R~rEv~~~~~e~  277 (348)
                      ..+..+.+-|++|+|||+++..+++...+   .|+|+..+-.-|.  .-.+++++.+.+
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~   71 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFL   71 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHH
Confidence            35778999999999999999988876532   4678776654332  235555555544

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.17  E-value=0.44  Score=38.66  Aligned_cols=53  Identities=15%  Similarity=0.129  Sum_probs=32.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh-HHHHHHHHHHc
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE-GNDLYREMIES  280 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE-v~~~~~e~~~~  280 (348)
                      +++...|.+|.|+|||.++..++.+....++..++|+.   ..++ +.+..++|.+.
T Consensus        22 ~~~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~---P~~~L~~q~~~~~~~~   75 (200)
T d1wp9a1          22 KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA---PTKPLVLQHAESFRRL   75 (200)
T ss_dssp             GGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC---SSHHHHHHHHHHHHHH
T ss_pred             hcCCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEc---CchHHHHHHHHHHHHh
Confidence            45678899999999998776666554433344444443   2333 34455666654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=84.66  E-value=0.27  Score=41.31  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=22.1

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      ..|.=++|.|++|+|||+++.+++.+
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            34666899999999999999998864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=84.34  E-value=0.34  Score=44.01  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=18.4

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +||-|++|+||||++..+....
T Consensus        83 IGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          83 ISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCCcHHHHHHHHHH
Confidence            6899999999999988776544

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=84.09  E-value=0.28  Score=41.19  Aligned_cols=25  Identities=36%  Similarity=0.549  Sum_probs=22.1

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .|.=++|.|++|+|||+++.+++.+
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            5777999999999999999998864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=84.08  E-value=0.16  Score=45.42  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=20.0

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .|+-++|.|++|+|||+|+..+..
T Consensus        27 ~~h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          27 GIGGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred             CCCeEEEECCCCccHHHHHHHHHH
Confidence            345699999999999999987653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.83  E-value=0.53  Score=42.24  Aligned_cols=22  Identities=27%  Similarity=0.452  Sum_probs=18.4

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      +||-|+.|+|||||+..++...
T Consensus        30 IGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          30 IFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            5788999999999998776544

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=82.85  E-value=0.38  Score=44.46  Aligned_cols=27  Identities=22%  Similarity=0.170  Sum_probs=22.8

Q ss_pred             ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          224 QRGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       224 gkGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      -++-.+++.||+|||||+++..+++..
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            466679999999999999999887643

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=82.70  E-value=0.3  Score=39.68  Aligned_cols=18  Identities=39%  Similarity=0.663  Sum_probs=15.5

Q ss_pred             eEeecCCCCcHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~i  246 (348)
                      +||-|++|+||||++..+
T Consensus         6 IgitG~~gSGKstva~~l   23 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALL   23 (191)
T ss_dssp             EEEEECTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            689999999999998643

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.13  E-value=0.34  Score=39.92  Aligned_cols=53  Identities=23%  Similarity=0.251  Sum_probs=31.1

Q ss_pred             cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh-HHHHHHHHHH
Q 018957          223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE-GNDLYREMIE  279 (348)
Q Consensus       223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE-v~~~~~e~~~  279 (348)
                      +-.|+.+.|.++.|+|||.++.-.+.+.... ..-++|+   ...++ +.+.+++|.+
T Consensus        37 l~~~~~~il~apTGsGKT~~a~l~i~~~~~~-~~~vl~l---~P~~~L~~q~~~~~~~   90 (202)
T d2p6ra3          37 VFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYV---VPLRALAGEKYESFKK   90 (202)
T ss_dssp             HTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEE---ESSHHHHHHHHHHHTT
T ss_pred             HHcCCCEEEEcCCCCchhHHHHHHHHHHhhc-cCcceee---cccHHHHHHHHHHHHH
Confidence            4578999999999999998865444333222 2223333   23333 4455555643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=82.04  E-value=0.36  Score=44.59  Aligned_cols=48  Identities=19%  Similarity=0.342  Sum_probs=26.4

Q ss_pred             eEeecCCCCcHHHHHHHHHHHHHhhcCCEE-----EEEEeeccchhHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNVAKAHGGFS-----VFAGVGERTREGNDLYREMIE  279 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~-----V~~~IGER~rEv~~~~~e~~~  279 (348)
                      ++.+||+|||||.|+..++...   +..++     -|-=.|.-++++...+.++..
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~---~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~  123 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATSLTEAGYVGEDVENILTRLLQ  123 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC--------CTHHHHHHHH
T ss_pred             eeeeCCCCccHHHHHHHHHhhc---ccceeehhhhhcccchhhHhhhccchhhhhh
Confidence            7899999999999998887542   22222     233345555555555555543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.19  E-value=0.42  Score=43.07  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=15.6

Q ss_pred             eEeecCCCCcHHHHHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      |||-|++|+||||++..+....
T Consensus         7 IgIaG~SGSGKTTva~~l~~i~   28 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQIF   28 (288)
T ss_dssp             EEEESCC---CCTHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            7999999999999998765543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=81.18  E-value=0.4  Score=44.13  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=20.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      .+.-..|.||+|+|||+++..++...
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHHHHH
Confidence            34567889999999999987766543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=81.02  E-value=1.8  Score=39.24  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=18.3

Q ss_pred             eeEeecCCCCcHHHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      -+++.|++|||||.|+..++...
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHh
Confidence            34557999999999998877653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=80.89  E-value=0.51  Score=39.60  Aligned_cols=21  Identities=24%  Similarity=0.094  Sum_probs=17.8

Q ss_pred             eeEeecCCCCcHHHHHHHHHH
Q 018957          228 KIGLFGGAGVGKTVLIMELIN  248 (348)
Q Consensus       228 r~gIfg~~GvGKT~L~~~ii~  248 (348)
                      .|||-|+.|+||||++.-+..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999876543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=80.54  E-value=0.43  Score=39.67  Aligned_cols=18  Identities=44%  Similarity=0.756  Sum_probs=15.7

Q ss_pred             eEeecCCCCcHHHHHHHH
Q 018957          229 IGLFGGAGVGKTVLIMEL  246 (348)
Q Consensus       229 ~gIfg~~GvGKT~L~~~i  246 (348)
                      +||.|+.|+||||++..+
T Consensus         5 IgITG~igSGKStv~~~l   22 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEECSTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            799999999999998633

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=80.16  E-value=0.91  Score=37.31  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=22.3

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINNV  250 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n~  250 (348)
                      ||.=|.|-|..|+||||++..+....
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            67778899999999999998887654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=80.14  E-value=0.35  Score=43.93  Aligned_cols=25  Identities=32%  Similarity=0.549  Sum_probs=20.7

Q ss_pred             cCceeEeecCCCCcHHHHHHHHHHH
Q 018957          225 RGGKIGLFGGAGVGKTVLIMELINN  249 (348)
Q Consensus       225 kGQr~gIfg~~GvGKT~L~~~ii~n  249 (348)
                      .|+.+.|.|+.|+||||++..++..
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred             hCCCEEEEeeccccchHHHHHHhhh
Confidence            4567999999999999999877653