Citrus Sinensis ID: 018964

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MGSLKNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF
ccccccccHHHHHHHHHcccccccccccccccccccEEcccccHHHHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccccccccccHHccccccccccccccccccccccc
cccccccccccccccccccccccHHccccccccccccccccccHHHHHHHHHHHcccccHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccHHHcHHcccccccHHHHHHHHHHHccccccccccccccEEEEcccc
mgslknetenevnqreqgeqeqedqepILMEQNqrfcmfpiRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARflndiqipEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLkkrglmpgltfsnelisrdeglhcDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCqrkynvenpfdwMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF
mgslknetenevnqreqgeqeqedqepILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASvmsslqngeknfvfkldedf
MGSLKNETenevnqreqgeqeqedqePILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF
********************************NQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQK**********************
*****************************MEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGD***********NGEKNFVFKLDEDF
*************************EPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF
*************************EPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMS*****************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGSLxxxxxxxxxxxxxxxxxxxxxEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query348 2.2.26 [Sep-21-2011]
P50651341 Ribonucleoside-diphosphat yes no 0.979 1.0 0.801 1e-165
P49730329 Ribonucleoside-diphosphat N/A no 0.931 0.984 0.75 1e-146
Q6Y657333 Putative ribonucleoside-d no no 0.931 0.972 0.734 1e-144
Q9LSD0332 Ribonucleoside-diphosphat no no 0.931 0.975 0.743 1e-138
P07201384 Ribonucleoside-diphosphat N/A no 0.925 0.838 0.663 1e-127
P79733386 Ribonucleoside-diphosphat yes no 0.979 0.883 0.617 1e-126
O15910337 Ribonucleoside-diphosphat N/A no 0.936 0.967 0.639 1e-125
Q4KLN6390 Ribonucleoside-diphosphat yes no 0.922 0.823 0.653 1e-124
Q9C167410 Ribonucleoside-diphosphat N/A no 0.945 0.802 0.635 1e-124
P11157390 Ribonucleoside-diphosphat yes no 0.922 0.823 0.653 1e-124
>sp|P50651|RIR2A_ARATH Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis thaliana GN=RNR2A PE=1 SV=2 Back     alignment and function desciption
 Score =  582 bits (1501), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 279/348 (80%), Positives = 307/348 (88%), Gaps = 7/348 (2%)

Query: 1   MGSLKNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTA 60
           MGSLK   E +    E+GE E    EP+LM QNQRF MFPIRYK +WEMYKKA+ASFWTA
Sbjct: 1   MGSLK---EGQGRDMEEGESE----EPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTA 53

Query: 61  EEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGF 120
           EEVDLS DVQ WE L DSEKHFISH+LAFFAASDGIVLENLAARFLND+Q+PEARAFYGF
Sbjct: 54  EEVDLSTDVQQWEALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGF 113

Query: 121 QIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERL 180
           QIAMENIHSEMYSLLLET+IKDSKEK RLFNAIE IPC+++KAKW LDWI S  SFA RL
Sbjct: 114 QIAMENIHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQSPMSFAVRL 173

Query: 181 VGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240
           V FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL+K+L 
Sbjct: 174 VAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLP 233

Query: 241 WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVEN 300
            +KV+ +VHEAVEIET+FVC+ALPC LIGMNS+LMSQYI+FVADRLLV LGC+R Y  EN
Sbjct: 234 LEKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYKAEN 293

Query: 301 PFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF 348
           PFDWMEFISLQGK NFFE+RVG+YQKASVMS+LQNG +N+ F  +EDF
Sbjct: 294 PFDWMEFISLQGKTNFFEKRVGEYQKASVMSNLQNGNQNYEFTTEEDF 341
Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 7EC: .EC: 4EC: .EC: 1
>sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q6Y657|RIR2B_ARATH Putative ribonucleoside-diphosphate reductase small chain B OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1 Back     alignment and function description
>sp|Q9LSD0|RIR2C_ARATH Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis thaliana GN=TSO2 PE=2 SV=1 Back     alignment and function description
>sp|P07201|RIR2_SPISO Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2 Back     alignment and function description
>sp|P79733|RIR2_DANRE Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio GN=rrm2 PE=1 SV=1 Back     alignment and function description
>sp|O15910|RIR2_TRYBB Ribonucleoside-diphosphate reductase small chain OS=Trypanosoma brucei brucei GN=RNR2 PE=2 SV=1 Back     alignment and function description
>sp|Q4KLN6|RIR2_RAT Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus norvegicus GN=Rrm2 PE=2 SV=1 Back     alignment and function description
>sp|Q9C167|RIR2_NEUCR Ribonucleoside-diphosphate reductase small chain OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rnr-2 PE=3 SV=2 Back     alignment and function description
>sp|P11157|RIR2_MOUSE Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus GN=Rrm2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
224100309342 predicted protein [Populus trichocarpa] 0.982 1.0 0.856 1e-175
388508294351 unknown [Lotus japonicus] 0.997 0.988 0.840 1e-173
351721787339 ribonucleotide reductase small subunit [ 0.974 1.0 0.859 1e-173
255551489342 ribonucleoside-diphosphate reductase sma 0.925 0.941 0.906 1e-173
225432510340 PREDICTED: ribonucleoside-diphosphate re 0.977 1.0 0.856 1e-172
297831106341 RNR2/RNR2A [Arabidopsis lyrata subsp. ly 0.979 1.0 0.795 1e-164
15229476341 Ribonucleoside-diphosphate reductase sma 0.979 1.0 0.801 1e-164
840719340 ribonucleotide reductase R2 [Arabidopsis 0.977 1.0 0.787 1e-159
356558708330 PREDICTED: ribonucleoside-diphosphate re 0.931 0.981 0.778 1e-151
356571527329 PREDICTED: ribonucleoside-diphosphate re 0.931 0.984 0.768 1e-150
>gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa] gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 298/348 (85%), Positives = 324/348 (93%), Gaps = 6/348 (1%)

Query: 1   MGSLKNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTA 60
           MGSL+N TE+E  +      E++ QEPIL EQNQRFCMFPIRYK++WEMYKKA+ASFWTA
Sbjct: 1   MGSLRNGTESERIR------EEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTA 54

Query: 61  EEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGF 120
           EEVDLS+D+Q WE L DSEKHFISHVLAFFAASDGIVLENLAARFL D+QIPEARAFYGF
Sbjct: 55  EEVDLSRDMQQWEALSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFYGF 114

Query: 121 QIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERL 180
           QIAMENIHSEMYSLLLETYIKDS+EKHRLFNAIENIPCVA+KAKWALDWI SS  FAERL
Sbjct: 115 QIAMENIHSEMYSLLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQSSMVFAERL 174

Query: 181 VGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLH 240
           V FAC+EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL+++LH
Sbjct: 175 VAFACIEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQRQLH 234

Query: 241 WQKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVEN 300
           WQKV+H+V EAVEIET+FVCEALPCALIGMN++LM  YIKFVADRLLVALG Q+KYNVEN
Sbjct: 235 WQKVYHIVGEAVEIETKFVCEALPCALIGMNATLMGDYIKFVADRLLVALGYQKKYNVEN 294

Query: 301 PFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF 348
           PFDWMEFISLQGKANFFERRVGDYQKASVMSSLQ+G KN+VFK+DEDF
Sbjct: 295 PFDWMEFISLQGKANFFERRVGDYQKASVMSSLQDGGKNYVFKMDEDF 342

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388508294|gb|AFK42213.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351721787|ref|NP_001237733.1| ribonucleotide reductase small subunit [Glycine max] gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max] Back     alignment and taxonomy information
>gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225432510|ref|XP_002279943.1| PREDICTED: ribonucleoside-diphosphate reductase small chain A [Vitis vinifera] Back     alignment and taxonomy information
>gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15229476|ref|NP_189000.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis thaliana] gi|27735240|sp|P50651.2|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A; AltName: Full=Ribonucleoside-diphosphate reductase R2A subunit; Short=AtRNR2; Short=Protein R2at; AltName: Full=Ribonucleotide reductase small subunit A gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana] gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana] gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana] gi|332643258|gb|AEE76779.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356558708|ref|XP_003547645.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] Back     alignment and taxonomy information
>gi|356571527|ref|XP_003553928.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
TAIR|locus:2088040341 RNR2A "ribonucleotide reductas 0.925 0.944 0.832 5.5e-148
TAIR|locus:2092030332 TSO2 "TSO MEANING 'UGLY' IN CH 0.925 0.969 0.744 8.1e-131
DICTYBASE|DDB_G0274021338 rnrB-2 "ribonucleoside-diphosp 0.925 0.952 0.656 1.7e-114
DICTYBASE|DDB_G0272616338 rnrB-1 "ribonucleoside-diphosp 0.925 0.952 0.656 1.7e-114
RGD|2323655390 LOC100359539 "ribonucleotide r 0.913 0.815 0.659 6.6e-113
ZFIN|ZDB-GENE-990415-25386 rrm2 "ribonucleotide reductase 0.913 0.823 0.656 8.4e-113
RGD|1598310390 Rrm2 "ribonucleotide reductase 0.913 0.815 0.656 1.4e-112
MGI|MGI:98181390 Rrm2 "ribonucleotide reductase 0.913 0.815 0.656 2.2e-112
UNIPROTKB|E1BI58390 RRM2 "Uncharacterized protein" 0.913 0.815 0.656 5.9e-112
UNIPROTKB|I3LUY0329 RRM2 "Uncharacterized protein" 0.913 0.966 0.656 7.6e-112
TAIR|locus:2088040 RNR2A "ribonucleotide reductase 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1445 (513.7 bits), Expect = 5.5e-148, P = 5.5e-148
 Identities = 268/322 (83%), Positives = 294/322 (91%)

Query:    27 PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHV 86
             P+LM QNQRF MFPIRYK +WEMYKKA+ASFWTAEEVDLS DVQ WE L DSEKHFISH+
Sbjct:    20 PLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDSEKHFISHI 79

Query:    87 LAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146
             LAFFAASDGIVLENLAARFLND+Q+PEARAFYGFQIAMENIHSEMYSLLLET+IKDSKEK
Sbjct:    80 LAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDSKEK 139

Query:   147 HRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGL 206
              RLFNAIE IPC+++KAKW LDWI S  SFA RLV FACVEGIFFSGSFCAIFWLKKRGL
Sbjct:   140 DRLFNAIETIPCISKKAKWCLDWIQSPMSFAVRLVAFACVEGIFFSGSFCAIFWLKKRGL 199

Query:   207 MPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPCA 266
             MPGLTFSNELISRDEGLHCDFACLLYSLL+K+L  +KV+ +VHEAVEIET+FVC+ALPC 
Sbjct:   200 MPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPLEKVYQIVHEAVEIETEFVCKALPCD 259

Query:   267 LIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQK 326
             LIGMNS+LMSQYI+FVADRLLV LGC+R Y  ENPFDWMEFISLQGK NFFE+RVG+YQK
Sbjct:   260 LIGMNSNLMSQYIQFVADRLLVTLGCERTYKAENPFDWMEFISLQGKTNFFEKRVGEYQK 319

Query:   327 ASVMSSLQNGEKNFVFKLDEDF 348
             ASVMS+LQNG +N+ F  +EDF
Sbjct:   320 ASVMSNLQNGNQNYEFTTEEDF 341
GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009186 "deoxyribonucleoside diphosphate metabolic process" evidence=IEA;ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0046914 "transition metal ion binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005971 "ribonucleoside-diphosphate reductase complex" evidence=ISS
GO:0009259 "ribonucleotide metabolic process" evidence=TAS
GO:0006281 "DNA repair" evidence=TAS
GO:0007275 "multicellular organismal development" evidence=IMP
GO:0051726 "regulation of cell cycle" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TAIR|locus:2092030 TSO2 "TSO MEANING 'UGLY' IN CHINESE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274021 rnrB-2 "ribonucleoside-diphosphate reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272616 rnrB-1 "ribonucleoside-diphosphate reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|2323655 LOC100359539 "ribonucleotide reductase M2 polypeptide" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-25 rrm2 "ribonucleotide reductase M2 polypeptide" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1598310 Rrm2 "ribonucleotide reductase M2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:98181 Rrm2 "ribonucleotide reductase M2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BI58 RRM2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LUY0 RRM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O46310RIR2_LEIAM1, ., 1, 7, ., 4, ., 10.61960.92520.9333N/Ano
Q4R741RIR2B_MACFA1, ., 1, 7, ., 4, ., 10.62190.92810.9202N/Ano
P50650RIR2_PLAF41, ., 1, 7, ., 4, ., 10.61760.95680.9541N/Ano
P50651RIR2A_ARATH1, ., 1, 7, ., 4, ., 10.80170.97981.0yesno
Q4KLN6RIR2_RAT1, ., 1, 7, ., 4, ., 10.65330.92240.8230yesno
P49730RIR2_TOBAC1, ., 1, 7, ., 4, ., 10.750.93100.9848N/Ano
P42521RIR2_DICDI1, ., 1, 7, ., 4, ., 10.65130.92810.9556yesno
P11157RIR2_MOUSE1, ., 1, 7, ., 4, ., 10.65330.92240.8230yesno
Q9QTF2RIR2_RSIV1, ., 1, 7, ., 4, ., 10.55040.85630.9551N/Ano
Q9LSD0RIR2C_ARATH1, ., 1, 7, ., 4, ., 10.74310.93100.9759nono
P50649RIR2_PLAFG1, ., 1, 7, ., 4, ., 10.62840.91090.9844N/Ano
P79733RIR2_DANRE1, ., 1, 7, ., 4, ., 10.61710.97980.8834yesno
P36603RIR2_SCHPO1, ., 1, 7, ., 4, ., 10.61070.95110.8465yesno
Q9DHU2RIR2_YLDV1, ., 1, 7, ., 4, ., 10.65120.91660.9815N/Ano
Q6Y657RIR2B_ARATH1, ., 1, 7, ., 4, ., 10.73470.93100.9729nono
O15910RIR2_TRYBB1, ., 1, 7, ., 4, ., 10.63930.93670.9673N/Ano
P31350RIR2_HUMAN1, ., 1, 7, ., 4, ., 10.64720.92240.8251yesno
Q9C167RIR2_NEUCR1, ., 1, 7, ., 4, ., 10.63520.94540.8024N/Ano
P07201RIR2_SPISO1, ., 1, 7, ., 4, ., 10.66350.92520.8385N/Ano
Q8SRR2RIR2_ENCCU1, ., 1, 7, ., 4, ., 10.59930.91950.9846yesno
Q60561RIR2_MESAU1, ., 1, 7, ., 4, ., 10.65030.91090.8212N/Ano
P09938RIR2_YEAST1, ., 1, 7, ., 4, ., 10.61020.94250.8220yesno
P48592RIR2_DROME1, ., 1, 7, ., 4, ., 10.63380.91370.8091yesno
P42170RIR2_CAEEL1, ., 1, 7, ., 4, ., 10.58400.94540.8635yesno
Q4R7Q7RIR2_MACFA1, ., 1, 7, ., 4, ., 10.64410.92240.8251N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.4.10.994
3rd Layer1.17.40.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
PLN02492324 PLN02492, PLN02492, ribonucleoside-diphosphate red 0.0
PTZ00211330 PTZ00211, PTZ00211, ribonucleoside-diphosphate red 0.0
pfam00268281 pfam00268, Ribonuc_red_sm, Ribonucleotide reductas 1e-133
cd01049288 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta 1e-128
COG0208348 COG0208, NrdF, Ribonucleotide reductase, beta subu 2e-97
PRK07209369 PRK07209, PRK07209, ribonucleotide-diphosphate red 2e-50
PRK09614324 PRK09614, nrdF, ribonucleotide-diphosphate reducta 3e-47
PRK12759410 PRK12759, PRK12759, bifunctional gluaredoxin/ribon 3e-27
PRK13967322 PRK13967, nrdF1, ribonucleotide-diphosphate reduct 4e-12
TIGR04171313 TIGR04171, RNR_1b_NrdF, ribonucleoside-diphosphate 6e-12
PRK13966324 PRK13966, nrdF2, ribonucleotide-diphosphate reduct 1e-10
PRK08326311 PRK08326, PRK08326, ribonucleotide-diphosphate red 2e-09
PRK13965335 PRK13965, PRK13965, ribonucleotide-diphosphate red 4e-09
cd07911280 cd07911, RNRR2_Rv0233_like, Ribonucleotide Reducta 4e-06
PRK09101376 PRK09101, nrdB, ribonucleotide-diphosphate reducta 5e-06
>gnl|CDD|215272 PLN02492, PLN02492, ribonucleoside-diphosphate reductase Back     alignment and domain information 
 Score =  684 bits (1768), Expect = 0.0
 Identities = 256/324 (79%), Positives = 285/324 (87%), Gaps = 1/324 (0%)

Query: 26  EPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISH 85
           EP+L E   RFCMFPI+Y Q+WEMYKKA+ASFWTAEEVDLS D++ WE+L D E+HFISH
Sbjct: 1   EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWEKLTDDERHFISH 60

Query: 86  VLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKE 145
           VLAFFAASDGIVLENLAARF+ ++Q+PEARAFYGFQIA+ENIHSEMYSLLL+TYIKD KE
Sbjct: 61  VLAFFAASDGIVLENLAARFMKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKE 120

Query: 146 KHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
           K RLFNAIE IPCVA+KA WAL WI SS SFAERLV FACVEGIFFSGSFCAIFWLKKRG
Sbjct: 121 KDRLFNAIETIPCVAKKADWALRWIDSSASFAERLVAFACVEGIFFSGSFCAIFWLKKRG 180

Query: 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265
           LMPGLTFSNELISRDEGLHCDFACLLYSLL+ +L  ++V  +V EAVEIE +FVC+ALPC
Sbjct: 181 LMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLSEERVKEIVCEAVEIEKEFVCDALPC 240

Query: 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQ 325
           AL+GMN+ LMSQYI+FVADRLLVALG ++ YNV NPFDWME ISLQGK NFFE+RVG+YQ
Sbjct: 241 ALVGMNADLMSQYIEFVADRLLVALGYEKVYNVVNPFDWMELISLQGKTNFFEKRVGEYQ 300

Query: 326 KASVMSSLQNGE-KNFVFKLDEDF 348
           KA VMSSL  G   N VF LDEDF
Sbjct: 301 KAGVMSSLNGGGADNHVFSLDEDF 324

Length = 324
>gnl|CDD|240315 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>gnl|CDD|144013 pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain Back     alignment and domain information
>gnl|CDD|153108 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|223286 COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|235968 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|236591 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|140023 PRK13967, nrdF1, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|213892 TIGR04171, RNR_1b_NrdF, ribonucleoside-diphosphate reductase, class 1b, beta subunit Back     alignment and domain information
>gnl|CDD|140022 PRK13966, nrdF2, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|236242 PRK08326, PRK08326, ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|184425 PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|153120 cd07911, RNRR2_Rv0233_like, Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 348
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 100.0
PLN02492324 ribonucleoside-diphosphate reductase 100.0
KOG1567344 consensus Ribonucleotide reductase, beta subunit [ 100.0
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 100.0
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 100.0
PRK09101376 nrdB ribonucleotide-diphosphate reductase subunit 100.0
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 100.0
PRK12759410 bifunctional gluaredoxin/ribonucleoside-diphosphat 100.0
PRK13966324 nrdF2 ribonucleotide-diphosphate reductase subunit 100.0
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 100.0
PRK13965335 ribonucleotide-diphosphate reductase subunit beta; 100.0
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 100.0
PRK13967322 nrdF1 ribonucleotide-diphosphate reductase subunit 100.0
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 100.0
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 100.0
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 98.47
cd01057 465 AAMH_A Aromatic and Alkene Monooxygenase Hydroxyla 97.81
PF02332233 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; 97.39
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 97.17
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 97.16
cd01058304 AAMH_B Aromatic and Alkene Monooxygenase Hydroxyla 97.14
TIGR02156289 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subu 96.96
PF05138263 PaaA_PaaC: Phenylacetic acid catabolic protein; In 96.9
PRK13778314 paaA phenylacetate-CoA oxygenase subunit PaaA; Pro 96.64
PF11266219 DUF3066: Protein of unknown function (DUF3066); In 95.76
PF03405330 FA_desaturase_2: Fatty acid desaturase; InterPro: 95.72
PRK13654355 magnesium-protoporphyrin IX monomethyl ester cycla 95.33
CHL00185351 ycf59 magnesium-protoporphyrin IX monomethyl ester 95.2
PRK14983231 aldehyde decarbonylase; Provisional 94.97
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 94.85
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 94.09
PLN02508357 magnesium-protoporphyrin IX monomethyl ester [oxid 93.36
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 92.93
PRK13654 355 magnesium-protoporphyrin IX monomethyl ester cycla 92.92
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 92.87
COG1633176 Uncharacterized conserved protein [Function unknow 92.21
CHL00185 351 ycf59 magnesium-protoporphyrin IX monomethyl ester 92.21
PLN02508 357 magnesium-protoporphyrin IX monomethyl ester [oxid 91.58
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 91.18
PF04305253 DUF455: Protein of unknown function (DUF455); Inte 91.11
PLN00179390 acyl- [acyl-carrier protein] desaturase 90.61
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 89.45
COG3396265 Uncharacterized conserved protein [Function unknow 85.69
cd01045139 Ferritin_like_AB Uncharacterized family of ferriti 84.88
TIGR03225 471 benzo_boxB benzoyl-CoA oxygenase, B subunit. Membe 80.28
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-86  Score=638.55  Aligned_cols=328  Identities=69%  Similarity=1.205  Sum_probs=315.2

Q ss_pred             hcccccccCccccccCCCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 018964           17 QGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGI   96 (348)
Q Consensus        17 ~~~~~~~~~e~il~~~~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~   96 (348)
                      ..+++.|++|+||+||++|++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+++|++
T Consensus         3 ~~~~~~~~~e~il~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~   82 (330)
T PTZ00211          3 EAMKENEEEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWEKLNDGERHFIKHVLAFFAASDGI   82 (330)
T ss_pred             hhhhcccccCccccCCCCcceecCCccHHHHHHHHHHHHcCCChhhcchhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHH
Q 018964           97 VLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSF  176 (348)
Q Consensus        97 v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~  176 (348)
                      |++++.+.+++.++.||+++|+++|+++|+||+++||+++++++.|+.++.++|+++.++|++++|++|+.++++++.++
T Consensus        83 v~~~~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~~~~~  162 (330)
T PTZ00211         83 VLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKKAEWAAKWINSSNSF  162 (330)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcchHH
Confidence            99999888999999999999999999999999999999999999889999999999999999999999999999988889


Q ss_pred             HHHHHHHHHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 018964          177 AERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIET  256 (348)
Q Consensus       177 ~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eav~~E~  256 (348)
                      ++++++++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++++||++|.
T Consensus       163 ~~~lv~~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~~ave~E~  242 (330)
T PTZ00211        163 AERLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPRERVQEIIKEAVEIER  242 (330)
T ss_pred             HHHHHHHHHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhcccccCCCcccccccccccccccccccCC
Q 018964          257 QFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNG  336 (348)
Q Consensus       257 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFE~~~t~Y~~~~~~~~~~~~  336 (348)
                      +|+.+++|++++||+.+++++||+|+||+||++||++|+|+++||+|||+.....+++||||+++|+|+|++.+.+.   
T Consensus       243 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~f~~~nP~~w~~~~~~~~~tnFFe~~~t~Y~k~~~~~~~---  319 (330)
T PTZ00211        243 EFICDALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYNSKNPFDWMDMISLQGKTNFFEKRVGEYQKAGVMAER---  319 (330)
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCchHHHhccccccccccccchhhhhcccccccc---
Confidence            99999999999999999999999999999999999999999999999998877788999999999999999776433   


Q ss_pred             CcccccccCCCC
Q 018964          337 EKNFVFKLDEDF  348 (348)
Q Consensus       337 ~~~~~~~~~~df  348 (348)
                       ++++|+|||||
T Consensus       320 -~~~~~~~~~df  330 (330)
T PTZ00211        320 -TSKVFSLDADF  330 (330)
T ss_pred             -ccccccccCCC
Confidence             25679999998

>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>KOG1567 consensus Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain Back     alignment and domain information
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1 Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain Back     alignment and domain information
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit Back     alignment and domain information
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid [] Back     alignment and domain information
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional Back     alignment and domain information
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide [] Back     alignment and domain information
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids Back     alignment and domain information
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>PRK14983 aldehyde decarbonylase; Provisional Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins Back     alignment and domain information
>PLN00179 acyl- [acyl-carrier protein] desaturase Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>COG3396 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria Back     alignment and domain information
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1h0n_A390 Cobalt Substitution Of Mouse R2 Ribonucleotide Redu 1e-125
2uw2_A332 Crystal Structure Of Human Ribonucleotide Reductase 1e-122
2p1i_A349 Plasmodium Yoelii Ribonucleotide Reductase Subunit 1e-120
3hf1_A351 Crystal Structure Of Human P53r2 Length = 351 1e-120
1jk0_A419 Ribonucleotide Reductase Y2y4 Heterodimer Length = 1e-117
1smq_A399 Structure Of The Ribonucleotide Reductase Rnr2 Homo 1e-117
2vux_A326 Human Ribonucleotide Reductase, Subunit M2 B Length 1e-112
3olj_A286 Crystal Structure Of Human Ribonucleotide Reductase 1e-109
2o1z_A311 Plasmodium Vivax Ribonucleotide Reductase Subunit R 1e-108
4djn_A311 Crystal Structure Of A Ribonucleotide Reductase M2 1e-106
1jk0_B345 Ribonucleotide Reductase Y2y4 Heterodimer Length = 1e-80
2ani_A346 Crystal Structure Of The F127y Mutant Of Ribonucleo 2e-35
4d8f_A366 Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PR 7e-35
1syy_A346 Crystal Structure Of The R2 Subunit Of Ribonucleoti 8e-35
2rcc_A346 Crystal Structure Of Putative Class I Ribonucleotid 5e-15
1piy_A375 Ribonucleotide Reductase R2 Soaked With Ferrous Ion 3e-10
1mrr_A375 Substitution Of Manganese For Iron In Ribonucleotid 3e-10
1pm2_A339 Crystal Structure Of Manganese Substituted R2-d84e 1e-09
1pim_A375 Dithionite Reduced E. Coli Ribonucleotide Reductase 1e-09
1av8_A340 Ribonucleotide Reductase R2 Subunit From E. Coli Le 2e-09
2alx_A340 Ribonucleotide Reductase R2 From Escherichia Coli I 2e-09
1xik_A375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain L 2e-09
1rnr_A375 Autocatalytic Generation Of Dopa In The Engineered 3e-09
1pfr_A340 Ribonucleoside-Diphosphate Reductase 1 Beta Chain L 4e-09
2av8_A340 Y122f Mutant Of Ribonucleotide Reductase From Esche 5e-09
1yfd_A375 Crystal Structure Of The Y122h Mutant Of Ribonucleo 8e-09
2xof_A375 Ribonucleotide Reductase Y122no2y Modified R2 Subun 2e-08
1pj0_A375 Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED 2e-08
1biq_B375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain M 3e-08
3mjo_A296 Small Subunit (R2f) Of Native Ribonucleotide Reduct 3e-08
2r2f_A319 Ribonucleotide Reductase R2f Protein From Salmonell 4e-08
1kgn_A329 R2f From Corynebacterium Ammoniagenes In Its Oxidis 4e-08
1rsr_A375 Azide Complex Of The Diferrous F208a Mutant R2 Subu 6e-08
1biq_A375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain M 2e-07
1uzr_A296 Crystal Structure Of The Class Ib Ribonucleotide Re 3e-07
4dr0_A350 Crystal Structure Of Bacillus Subtilis Dimanganese( 2e-06
3n37_A319 Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From 5e-06
3ee4_A323 R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCU 6e-04
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State Length = 390 Back     alignment and structure 
Iteration: 1

 Score =  443 bits (1140), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/323 (65%), Positives = 254/323 (78%), Gaps = 5/323 (1%)
Query: 27  PILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHV 86
           P+L E  +RF +FPI Y  +W+MYKKA+ASFWTAEEVDLS+D+QHWE L   E+HFISHV
Sbjct: 72  PLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHV 131
Query: 87  LAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEK 146
           LAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAMENIHSEMYSLL++TYIKD KE+
Sbjct: 132 LAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKER 191
Query: 147 HRLFNAIENIPCVAQKAKWALDWIHSSD-SFAERLVGFACVEGIFFSGSFCAIFWLKKRG 205
             LFNAIE +PCV +KA WAL WI   + ++ ER+V FA VEGIFFSGSF +IFWLKKRG
Sbjct: 192 EYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRG 251
Query: 206 LMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEALPC 265
           LMPGLTFSNELISRDEGLHCDFACL++  L  +   Q+V  ++  AV IE +F+ EALP 
Sbjct: 252 LMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPV 311
Query: 266 ALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQ 325
            LIGMN +LM QYI+FVADRL++ LG  + + VENPFD+ME ISL+GK NFFE+RVG+YQ
Sbjct: 312 KLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEKRVGEYQ 371
Query: 326 KASVMSSLQNGEKNFVFKLDEDF 348
           +  VMS   N  +N  F LD DF
Sbjct: 372 RMGVMS---NSTEN-SFTLDADF 390
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit R2 Length = 332 Back     alignment and structure
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) Length = 349 Back     alignment and structure
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2 Length = 351 Back     alignment and structure
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer Length = 419 Back     alignment and structure
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae Length = 399 Back     alignment and structure
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B Length = 326 Back     alignment and structure
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit M2 (Hrrm2) Length = 286 Back     alignment and structure
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) Length = 311 Back     alignment and structure
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B (Rnrr2) From Homo Sapiens At 2.20 A Resolution Length = 311 Back     alignment and structure
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer Length = 345 Back     alignment and structure
>pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide Reductase R2 From Chlamydia Trachomatis Length = 346 Back     alignment and structure
>pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE 1 - High Mn) Length = 366 Back     alignment and structure
>pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide Reductase From Chlamydia Trachomatis Length = 346 Back     alignment and structure
>pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution Length = 346 Back     alignment and structure
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At Neutral Ph Length = 375 Back     alignment and structure
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization Length = 375 Back     alignment and structure
>pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-d84e (d84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) Length = 339 Back     alignment and structure
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant Length = 375 Back     alignment and structure
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli Length = 340 Back     alignment and structure
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space Group P6(1)22 Length = 340 Back     alignment and structure
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 375 Back     alignment and structure
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein R2 F208y From Escherichia Coli Ribonucleotide Reductase And Crystal Structure Of The Dopa-208 Protein Length = 375 Back     alignment and structure
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 340 Back     alignment and structure
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli Length = 340 Back     alignment and structure
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide Reductase R2 Protein From E. Coli Length = 375 Back     alignment and structure
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of E. Coli Length = 375 Back     alignment and structure
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH FERROUS IONS At Neutral Ph Length = 375 Back     alignment and structure
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Back     alignment and structure
>pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase From Corynebacterium Ammoniagenes Length = 296 Back     alignment and structure
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) Length = 319 Back     alignment and structure
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form Length = 329 Back     alignment and structure
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Back     alignment and structure
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Back     alignment and structure
>pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis Length = 296 Back     alignment and structure
>pdb|4DR0|A Chain A, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii) Nrdf Length = 350 Back     alignment and structure
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli Length = 319 Back     alignment and structure
>pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 0.0
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 1e-180
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 1e-175
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 1e-173
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 1e-173
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 1e-165
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 1e-162
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 1e-154
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 1e-134
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 1e-117
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 1e-115
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 1e-109
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 1e-108
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 1e-107
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 1e-95
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Length = 390 Back     alignment and structure
 Score =  506 bits (1305), Expect = 0.0
 Identities = 211/345 (61%), Positives = 259/345 (75%), Gaps = 5/345 (1%)

Query: 5   KNETENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVD 64
           +   ++   + +       + EP+L E  +RF +FPI Y  +W+MYKKA+ASFWTAEEVD
Sbjct: 50  RIFQDSAELESKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVD 109

Query: 65  LSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAM 124
           LS+D+QHWE L   E+HFISHVLAFFAASDGIV ENL  RF  ++Q+ EAR FYGFQIAM
Sbjct: 110 LSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAM 169

Query: 125 ENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSD-SFAERLVGF 183
           ENIHSEMYSLL++TYIKD KE+  LFNAIE +PCV +KA WAL WI   + ++ ER+V F
Sbjct: 170 ENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAF 229

Query: 184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQK 243
           A VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L  +   Q+
Sbjct: 230 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQR 289

Query: 244 VHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFD 303
           V  ++  AV IE +F+ EALP  LIGMN +LM QYI+FVADRL++ LG  + + VENPFD
Sbjct: 290 VREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFD 349

Query: 304 WMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFKLDEDF 348
           +ME ISL+GK NFFE+RVG+YQ+  VMS+         F LD DF
Sbjct: 350 FMENISLEGKTNFFEKRVGEYQRMGVMSNSTENS----FTLDADF 390
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Length = 349 Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Length = 419 Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Length = 345 Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Length = 346 Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Length = 311 Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} Length = 286 Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Length = 350 Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} Length = 323 Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Length = 319 Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Length = 329 Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Length = 346 Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Length = 375 Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A* Length = 296 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 100.0
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 100.0
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 100.0
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 100.0
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 100.0
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 100.0
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 100.0
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 100.0
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 100.0
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 100.0
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 100.0
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 100.0
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 100.0
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 100.0
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 100.0
2inc_A 491 Toluene, O-xylene monooxygenase oxygenase subunit; 98.24
1mty_D 512 Methane monooxygenase hydroxylase; dinuclear iron 97.92
3ge3_A 500 Toluene-4-monooxygenase system protein A; DIIRON h 97.64
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 97.55
2inc_B322 Toluene, O-xylene monooxygenase oxygenase subunit; 97.52
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 97.44
1mhy_B395 Methane monooxygenase hydroxylase; oxidoreductase, 97.08
3u52_C333 Phenol hydroxylase component PHL; 4-helix bundle, 96.87
3ge3_B327 Toluene-4-monooxygenase system protein E; DIIRON h 96.8
3u52_A 511 Phenol hydroxylase component PHN; 4-helix bundle, 96.79
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 96.63
1mty_B384 Methane monooxygenase hydroxylase; dinuclear iron 96.55
3chh_A336 P-aminobenzoate N-oxygenase; DI-iron oxygenase, ox 95.68
2oc5_A244 Hypothetical protein; DUF3066 family protein, stru 95.67
3pf7_A 481 Benzoyl-COA oxygenase component B; DIIRON center, 94.92
1zpy_A95 Hypothetical protein NE0167; structural genomics, 90.79
1rcw_A231 CT610, CADD; iron, DI-iron, redox enzyme, metallo 86.7
3bjd_A332 Putative 3-oxoacyl-(acyl-carrier-protein) synthas; 86.11
3qhb_A179 Symerythrin, ORF180; four-helix bundle, carboxylat 80.79
3k6c_A95 Uncharacterized protein NE0167; structural genomic 80.56
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
Probab=100.00  E-value=1.3e-86  Score=640.51  Aligned_cols=321  Identities=64%  Similarity=1.112  Sum_probs=253.1

Q ss_pred             cCccccccCCCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018964           24 DQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLENLAA  103 (348)
Q Consensus        24 ~~e~il~~~~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~~L~~~er~~~~~~la~l~~~d~~v~~~l~~  103 (348)
                      .+||||+||+.|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++++
T Consensus        29 ~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~l~~  108 (349)
T 2p1i_A           29 SNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLAS  108 (349)
T ss_dssp             ------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCSHHHHHSCTTTHHHHHHHHHHHTTC-----CCCHH
T ss_pred             ccCccccCCCcccccCCCcchHHHHHHHHHHHcCCchhhcCccccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 018964          104 RFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDSFAERLVGF  183 (348)
Q Consensus       104 ~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~~~~~~~~lv~~  183 (348)
                      .+++.++.||+++|+++|+++|+||+++||+|+++++.||++++++|+++.++|+|++|++|+.++++++.+++++++++
T Consensus       109 ~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~lva~  188 (349)
T 2p1i_A          109 KFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVAN  188 (349)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCSSCHHHHHHHH
T ss_pred             HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            99999999999999999999999999999999999988999999999999999999999999999998777899999999


Q ss_pred             HHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 018964          184 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEAL  263 (348)
Q Consensus       184 ~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~eav~~E~~~~~~~~  263 (348)
                      +++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.++++++|++++++||++|++|+.+++
T Consensus       189 ~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~v~~l~~eave~E~~~~~~~l  268 (349)
T 2p1i_A          189 ACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESL  268 (349)
T ss_dssp             HHHTTTTTHHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999888899999999999999999999889


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhcccccCCCcccccccccccccccccccCCCcccccc
Q 018964          264 PCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGEKNFVFK  343 (348)
Q Consensus       264 ~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFE~~~t~Y~~~~~~~~~~~~~~~~~~~  343 (348)
                      |.+++||+.+++++||+|+||+||.+||++|+|++.||+|||+.++..+|+||||+++++|+|++++...    .+.+|+
T Consensus       269 ~~~~~Gl~~~~~~~Yi~y~an~~L~~LG~~~~y~~~nP~~wm~~~~~~~k~nFFe~r~~~Y~k~~~~~~~----~~~~~~  344 (349)
T 2p1i_A          269 PCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMDLISLQGKTNFFEKRVADYQKSGVMAQR----KEQVFS  344 (349)
T ss_dssp             CSTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCSCCC---------------------------------------
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHhcccccCCcccCCccccccccccccC----CCCeee
Confidence            9999999999999999999999999999999999999999999988888899999999999999877654    277899


Q ss_pred             cCCCC
Q 018964          344 LDEDF  348 (348)
Q Consensus       344 ~~~df  348 (348)
                      |||||
T Consensus       345 ~~~~f  349 (349)
T 2p1i_A          345 LNTDF  349 (349)
T ss_dssp             -----
T ss_pred             cCCCC
Confidence            99998
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A Back     alignment and structure
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A Back     alignment and structure
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ... Back     alignment and structure
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A Back     alignment and structure
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Back     alignment and structure
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B* Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B Back     alignment and structure
>3u52_C Phenol hydroxylase component PHL; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_C* 2inp_C Back     alignment and structure
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B Back     alignment and structure
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ... Back     alignment and structure
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A Back     alignment and structure
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6 Back     alignment and structure
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4 Back     alignment and structure
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1} Back     alignment and structure
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 348
d1jk0a_334 a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's 5e-97
d1w68a_281 a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse ( 4e-86
d1syya_317 a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamyd 5e-77
d1jk0b_285 a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's 9e-76
d1mxra_339 a.25.1.2 (A:) Ribonucleotide reductase R2 {Escheri 6e-71
d1r2fa_283 a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmone 2e-61
d3dhza1284 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {C 1e-60
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Length = 334 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]

 Score =  288 bits (739), Expect = 5e-97
 Identities = 177/288 (61%), Positives = 226/288 (78%), Gaps = 2/288 (0%)

Query: 21  EQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLL-DSE 79
           E E +EP+L E  +R  +FPI+Y ++W+ YK+A+ASFWTAEE+DLS+D+  W   + ++E
Sbjct: 46  EMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENE 105

Query: 80  KHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY 139
           + FIS VLAFFAASDGIV ENL   F  ++QIPEA++FYGFQI +ENIHSE YSLL++TY
Sbjct: 106 RFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTY 165

Query: 140 IKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAI 198
           IKD KE   LFNAI  IP + +KA+WAL WI  +D+ F ERLV FA +EG+FFSGSF +I
Sbjct: 166 IKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASI 225

Query: 199 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQF 258
           FWLKKRG+MPGLTFSNELI RDEGLH DFACLL++ L+ +     V  +V EAVEIE ++
Sbjct: 226 FWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRY 285

Query: 259 VCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWME 306
             +ALP AL+GMN+ LM+QY++FVADRLLVA G ++ Y VENPFD+ME
Sbjct: 286 FLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFME 333
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317 Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Length = 285 Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Length = 339 Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Length = 283 Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 284 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
d1jk0a_334 Ribonucleotide reductase R2 {Baker's yeast (Saccha 100.0
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 100.0
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 100.0
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 100.0
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 100.0
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 100.0
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 100.0
d2inca1 491 Toluene, o-xylene monooxygenase oxygenase subunit 98.79
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 98.53
d2incb1322 Toluene, o-xylene monooxygenase oxygenase subunit 97.12
d1za0a1267 Possible acyl-[acyl-carrier protein] desaturase {M 96.79
d1mtyb_384 Methane monooxygenase hydrolase beta subunit {Meth 96.37
d1afra_345 delta 9-stearoyl-acyl carrier protein desaturase { 96.32
d2oc5a1222 Hypothetical protein PMT1231 {Prochlorococcus mari 96.16
d1mhyb_383 Methane monooxygenase hydrolase beta subunit {Meth 95.71
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 94.86
d1rcwa_213 Hypothetical protein CT610 {Chlamydia trachomatis 92.55
d1udda_215 Hypothetical transcriptional regulator PH1161 {Pyr 89.86
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 85.55
d1zpya191 Hypothetical protein NE0167 {Nitrosomonas europaea 81.67
d1vjxa_149 Hypothetical protein TM1526 {Thermotoga maritima [ 81.39
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]

Probab=100.00  E-value=1.7e-77  Score=572.35  Aligned_cols=293  Identities=60%  Similarity=1.069  Sum_probs=282.9

Q ss_pred             hhhhcccccccCccccccCCCceeeccCCchHHHHHHHHHhcCCcCccccCcccchHHHh-cCCHHHHHHHHHHHHHHHH
Q 018964           14 QREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWE-RLLDSEKHFISHVLAFFAA   92 (348)
Q Consensus        14 ~~~~~~~~~~~~e~il~~~~~~~~~~pikY~~~~~lykk~~~~fW~peeid~s~D~~d~~-~L~~~er~~~~~~la~l~~   92 (348)
                      -.++++.+.+++||||.+|+.|++++||||||+|++|+++.++||+|+|||+++|+.||+ +||+.||++++++|++|++
T Consensus        39 ~~~~~~~~~~~~e~~l~~~~~r~~~~PikY~~~~~~Ykk~~~~fW~peEIdls~D~~dw~~~Lt~~Er~~i~~il~ffa~  118 (334)
T d1jk0a_          39 VHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAA  118 (334)
T ss_dssp             HHHHHHHHHGGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred             hhHHHhHhhhcCCcccCCCCCceeEeCCcCHHHHHHHHHHHHcCCCchhccCcCCHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence            356778899999999999999999999999999999999999999999999999999996 6999999999999999999


Q ss_pred             HHHHHHhhHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcHHHHHHHHHHHHHhcC
Q 018964           93 SDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWALDWIHS  172 (348)
Q Consensus        93 ~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~esYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~i~~~~~~  172 (348)
                      +|++|++++.+.+++.++.||+++|+++|+++|+||+++||+++++++.|+.++..+|+++.+.|.+++|++|+.+++.+
T Consensus       119 ~D~~v~~~l~~~~~~~v~~pE~~~~~~~q~~~E~IHsesYS~ii~tl~~d~~e~~~lf~~~~~~~~i~~k~~~~~~~~~~  198 (334)
T d1jk0a_         119 SDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQD  198 (334)
T ss_dssp             TSSHHHHHHCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             hhHHHHhHHHHhhhHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHCHHHHHHHHHHHHhhhh
Confidence            99999999987899999999999999999999999999999999999999999989999999999999999999999964


Q ss_pred             c-hHHHHHHHHHHHhhHHHHHhHHHHHHHHHhcCCCCchHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 018964          173 S-DSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEA  251 (348)
Q Consensus       173 ~-~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~l~g~~~~i~~I~rDE~~H~~f~~~l~~~l~~e~~~~~i~~l~~ea  251 (348)
                      . ..+.+++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+++++.|++++++|
T Consensus       199 ~~~~~~~~lva~~~lEgi~F~ssFa~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~i~~i~~eA  278 (334)
T d1jk0a_         199 ADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEA  278 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhHHhhhhhHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            4 458899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhh
Q 018964          252 VEIETQFVCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWME  306 (348)
Q Consensus       252 v~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~nP~~w~~  306 (348)
                      |++|.+|+.++++.+++|||++.+++||+|+||+||++||++|+|+++||+|||+
T Consensus       279 velE~~~~~~~~~~~~~Gln~~~~~~YI~y~Anr~L~~LG~~~~f~~~NP~~wme  333 (334)
T d1jk0a_         279 VEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFME  333 (334)
T ss_dssp             HHHHHHHHHTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSSCCCCCCGGGG
T ss_pred             HHHHHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCccc
Confidence            9999999999999999999999999999999999999999999999999999997
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Back     information, alignment and structure
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure