Citrus Sinensis ID: 019003

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNGSESNDAKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEcccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHHHHHHHHHccccccccEcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
mrsksertnqlepdpnaippgaaytepwwrgvgynsispalaganvsnsssldcpngsesndaksisndglneedddankesqatassrsagnhgqknqnvqqgasamptirdecftqppqlelvghsiacasnpyqdpyyggmmaayghqpvgypqfvgmpharmplplemaqepvyvNAKQYMGILRRRQARAKAELEKKLIKVrkpylhesrHQHAMRRargsggrfakktddaskgnsekkgggsgirpslsgsssgsepvpsdsaetwnssasqqdvggsqahNMHEARNhananggyqnhglqastyhshlgdrgetgdcsgkqwgsissnqasqrplaiq
Flexible Loop (DISEMBL)
mrsksertnqlepdpnaippGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNGSESNDAKSISNDGLNEEDDDANKESQATassrsagnhgqknqnVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIkvrkpylhesrhqhamrrargsggrfakktddaskgnsekkgggsgirpslsgsssgsePVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWgsissnqasqrplaiq
Low Complexity Region (SEG)
MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNGSESNDAKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDAskgnsekkgggsgirpslsgsssgsepvpsdsAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ
Disordered region (IsUnstruct)
*********************AAYTEPWWRGVGYNSISPA**************************************************************************CFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQ**********LIK**********************************************************************************************************************************************
Disordered Region (DISOPRED)
***************************WWR*****************************************************************************************************ASNPYQDPYYGGMMAA***********************EMAQEPVYVNAKQYMGILRRRQAR*********************************************************************************************************************************************************
Disordered Region (DISEMBL)
************PDPNAIPPGAAYTEPWWRGVGYNSISPALAGAN**************************************************************MPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLH***************************************************************************HNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGS**************
Disordered Region (DISPRO)
*****************************************************************************************************************ECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRAR*S**RFA********************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNGSESNDAKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q9LXV5	272	Nuclear transcription fac	yes	no	0.775	0.988	0.560	7e-74
Q945M9	303	Nuclear transcription fac	no	no	0.680	0.778	0.510	4e-64
Q93ZH2	340	Nuclear transcription fac	no	no	0.273	0.279	0.612	7e-27
Q84JP1	190	Nuclear transcription fac	no	no	0.389	0.710	0.489	9e-26
Q9LNP6	328	Nuclear transcription fac	no	no	0.259	0.274	0.581	5e-25
Q8VY64	198	Nuclear transcription fac	no	no	0.314	0.550	0.521	6e-25
Q9LVJ7	308	Nuclear transcription fac	no	no	0.265	0.298	0.578	2e-24
Q9SYH4	308	Nuclear transcription fac	no	no	0.317	0.357	0.483	4e-24
Q8LFU0	269	Nuclear transcription fac	no	no	0.515	0.665	0.339	2e-20
Q9M9X4	295	Nuclear transcription fac	no	no	0.325	0.383	0.436	8e-20

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  277 bits (709), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 157/280 (56%), Positives = 191/280 (68%), Gaps = 11/280 (3%)

Query: 1   MRSKSERTNQLEPDPN-AIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNGSE 59
           M+SK  R N+ E + + A+     Y EPWW+   +  +  A      SNSSSLDCPNGSE
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSE 60

Query: 60  SNDAKSISNDG-LNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQ 118
           SND  S S DG LN E+D   K+SQA  SSRS  NHG +  +    A ++  + D+   Q
Sbjct: 61  SNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDP---ALSIRNMHDQPLVQ 117

Query: 119 PPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVY 178
           PP  ELVGH IAC  NPYQDPYYGG+M AYGHQ +G+  ++GMP  R  LPL+MAQEPVY
Sbjct: 118 PP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVY 175

Query: 179 VNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDAS 238
           VNAKQY GILRRR+ARAKAELE+K+I+ RKPYLHESRH+HAMRRAR SGGRFAKK++  +
Sbjct: 176 VNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEA 235

Query: 239 KGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSAS 278
               E  GG    R S + +SSGSE V +DS ET NSS +
Sbjct: 236 ---GEDAGGRDRERGSAT-NSSGSEQVETDSNETLNSSGA 271

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  245 bits (625), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 150/294 (51%), Positives = 177/294 (60%), Gaps = 58/294 (19%)

Query: 59  ESNDAKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQ 118
           ESN +KS SN      D+  NKESQ T S +SAG++  KNQ         P         
Sbjct: 63  ESNGSKSPSN-----RDNTVNKESQVTTSPQSAGDYSDKNQESLHHGITQP--------- 108

Query: 119 PPQLELVGHSIACAS-NPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPV 177
           PP  +LVGH++  AS NPYQDPYY G+M AYGH P+G+  + GMPH+RMPLP EMAQEPV
Sbjct: 109 PPHPQLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPV 168

Query: 178 YVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD-D 236
           +VNAKQY  ILRRRQARAKAELEKKLIK RKPYLHESRHQHAMRR RG+GGRFAKKT+ +
Sbjct: 169 FVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRFAKKTNTE 228

Query: 237 ASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNH 296
           ASK  +E+K  G      ++ S S S    SD  E W                       
Sbjct: 229 ASKRKAEEKSNG-----HVTQSPSSSN---SDQGEAW----------------------- 257

Query: 297 ANANGGY---QNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ 347
              NG Y   Q   +Q+S Y      R E G+CSG+QW S+SSN  SQ  LAI+
Sbjct: 258 ---NGDYRTPQGDEMQSSAY-----KRREEGECSGQQWNSLSSNHPSQARLAIK 303

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  121 bits (304), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 73/98 (74%), Gaps = 3/98 (3%)

Query: 136 YQDPYYGGMMAA-YGHQ-PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQ 192
           Y DP+YGG++AA Y  Q P   PQ V M   R+PLP E+ + +PV+VNAKQY  I+RRRQ
Sbjct: 137 YADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQ 196

Query: 193 ARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 230
            RAK E + KLI+ RKPYLHESRH HA++R RGSGGRF
Sbjct: 197 QRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRF 234

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  117 bits (294), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 90/139 (64%), Gaps = 4/139 (2%)

Query: 128 SIACASNPYQDPYYGGMMAAYGHQPVG-YPQFVGMPHARMPLPLEMAQEPVYVNAKQYMG 186
           S+A    PY DPYY  + A       G + Q +G+    +PLP +  +EPV+VNAKQY G
Sbjct: 52  SMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHG 111

Query: 187 ILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDASKGNS-E 243
           ILRRRQ+RA+ E + K+IK RKPYLHESRH HA+RR RG GGRF  AKK D+  + +S E
Sbjct: 112 ILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHE 171

Query: 244 KKGGGSGIRPSLSGSSSGS 262
           +K   S  + +++ SS  S
Sbjct: 172 EKSNLSAGKSAMAASSGTS 190

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 71/98 (72%), Gaps = 8/98 (8%)

Query: 136 YQDPYYGGMM-AAYGHQPVGY-PQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQ 192
           Y DP++GG+M AAY  Q   + PQ       R+PLP ++ + EPV+VNAKQ+  I+RRRQ
Sbjct: 135 YADPHFGGLMPAAYLPQATIWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAIMRRRQ 189

Query: 193 ARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 230
            RAK E + KLIK RKPYLHESRH HA++R RGSGGRF
Sbjct: 190 QRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRF 227

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  115 bits (287), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 73/115 (63%), Gaps = 6/115 (5%)

Query: 135 PYQDPYYGGMMAAYGHQPVGYP----QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRR 190
           PY DPYY  + A   + P  YP    Q +GM    +PL  +  +EPV+VNAKQY GILRR
Sbjct: 54  PYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRR 113

Query: 191 RQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDASKGNSE 243
           RQ+RAK E   + IK +KPY+HESRH HA+RR RG GGRF  AKK +   K   E
Sbjct: 114 RQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKENGDHKEEEE 168

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 3/95 (3%)

Query: 139 PYYGGMMAA-YGHQ-PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARA 195
           P++ G ++  Y  Q  V +PQ  G+  +RMPLP  + + EP++VNAKQY  ILRRR+ RA
Sbjct: 132 PHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRA 191

Query: 196 KAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 230
           K E + KLIKVRKPYLHESRH HA++R RGSGGRF
Sbjct: 192 KLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRF 226

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/120 (48%), Positives = 79/120 (65%), Gaps = 10/120 (8%)

Query: 125 VGHSIACASNPYQDPYYGGMMA-AYGHQPVGYP--QFVGMPHARMPLPLEMAQ-EPVYVN 180
           +  S+ CA    +  ++ G +A  Y   P   P  + +G+  +R+PLP  + + EP++VN
Sbjct: 128 ISWSLQCA----ETSHFNGFLAPEYASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVN 183

Query: 181 AKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDAS 238
           AKQY  ILRRR+ RAK E + KLIK RKPYLHESRH HA++RARGSGGRF   KK  ++S
Sbjct: 184 AKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESS 243

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 107/218 (49%), Gaps = 39/218 (17%)

Query: 27  PWWRGVGYNSISPALAGANVSNSSSLDCPNGSESNDAKSISNDGLNEEDDDANKESQATA 86
           PWW   G   ++        S+S +            K+++ +    E    +K++  T 
Sbjct: 13  PWWNAFGSQPLTTESLSGEASDSFT----------GVKAVTTEA---EQGVVDKQTSTTL 59

Query: 87  SSRSAGNHGQKNQNVQQGASAMPTIRDECFTQPPQLEL-VGHSIACASNPYQDPYYGGMM 145
            + S G  G+K+            ++  CF      E      +    +P+ + YYG ++
Sbjct: 60  FTFSPG--GEKSSRDVPKPHVAFAMQSACF------EFGFAQPMMYTKHPHVEQYYG-VV 110

Query: 146 AAYGHQPVGYPQFVGMPHARMPLPLEMAQE---PVYVNAKQYMGILRRRQARAKAELEKK 202
           +AYG Q             R+ +PL+M  E    +YVN+KQY GI+RRRQ+RAKAE   K
Sbjct: 111 SAYGSQ---------RSSGRVMIPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---K 158

Query: 203 LIKVRKPYLHESRHQHAMRRARGSGGRFA-KKTDDASK 239
           L + RKPY+H SRH HAMRR RGSGGRF   KT DA+K
Sbjct: 159 LSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTKTADAAK 196

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 82/142 (57%), Gaps = 29/142 (20%)

Query: 116 FTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQE 175
           F+QPP              PY +  Y G+++AYG Q            +R+ LPL M  E
Sbjct: 96  FSQPP---------IYTKYPYGEQQYYGVVSAYGSQ------------SRVMLPLNMETE 134

Query: 176 --PVYVNAKQYMGILRRRQARAKAE--LEKKLI--KVRKPYLHESRHQHAMRRARGSGGR 229
              +YVN+KQY GI+RRRQ+RAKA   L++K +  + RKPY+H SRH HA+RR RGSGGR
Sbjct: 135 DSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGR 194

Query: 230 F--AKKTDDASKGNSEKKGGGS 249
           F   K  +  + G + KKG GS
Sbjct: 195 FLNTKSQNLENSGTNAKKGDGS 216

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
255544876	350	Nuclear transcription factor Y subunit A	0.997	0.988	0.675	1e-118
356566267	338	PREDICTED: nuclear transcription factor	0.948	0.973	0.665	1e-117
356527208	336	PREDICTED: nuclear transcription factor	0.945	0.976	0.655	1e-114
356527210	338	PREDICTED: nuclear transcription factor	0.945	0.970	0.651	1e-113
359478376	345	PREDICTED: nuclear transcription factor	0.985	0.991	0.634	1e-111
147834809	446	hypothetical protein VITISV_002755 [Viti	0.985	0.766	0.622	1e-107
388523189	329	nuclear transcription factor Y subunit A	0.930	0.981	0.637	1e-107
357460371	349	Nuclear transcription factor Y subunit [	0.930	0.925	0.637	1e-107
356552340	327	PREDICTED: nuclear transcription factor	0.933	0.990	0.6	1e-101
449450972	341	PREDICTED: nuclear transcription factor	0.968	0.985	0.619	1e-100

>gi|255544876|ref|XP_002513499.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis] gi|223547407|gb|EEF48902.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/351 (67%), Positives = 272/351 (77%), Gaps = 5/351 (1%)

Query: 1   MRSKSERTNQLEP-DPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNGSE 59
           M+SKSE  NQLE  D +++PP A ++EPWWR +GY+++S ALAG N SN SS + PNGS 
Sbjct: 1   MQSKSESANQLESRDQHSLPPYAVHSEPWWRTIGYSTVSRALAGGNASNLSSSEGPNGSL 60

Query: 60  SNDAKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQP 119
           SND +S+SN  LNEEDDDA+KESQATASSRS  N GQ+N+N+Q  A +M  +RDE  TQP
Sbjct: 61  SNDDQSMSNGRLNEEDDDASKESQATASSRSVLNGGQENRNLQHVAPSMTAMRDEGLTQP 120

Query: 120 PQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYV 179
            QLELVGHSIACASNPYQDPYYGGMMA YGHQP+GYP F+G    RM LP E+AQEPVYV
Sbjct: 121 TQLELVGHSIACASNPYQDPYYGGMMAPYGHQPLGYP-FLGGHQVRMALPNEIAQEPVYV 179

Query: 180 NAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKT-DDAS 238
           NAKQY GILRRRQARAKAE EKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKT  D S
Sbjct: 180 NAKQYPGILRRRQARAKAEHEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTGGDDS 239

Query: 239 KGNSEKKGGGSGIRP-SLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHA 297
           K N E     +G  P S SGSSSGSE +PSDSA+TWN     Q++  ++ ++  EARNH 
Sbjct: 240 KNNKEGTANDTGAIPSSQSGSSSGSEQLPSDSAQTWNLPHGDQELRSARVYDTSEARNHI 299

Query: 298 NANGGYQNH-GLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ 347
           N    YQNH GLQ   +H H G++GE  DCSG+Q GSISSNQ SQRPLAIQ
Sbjct: 300 NGGSHYQNHSGLQTLKHHPHSGEKGEDEDCSGQQRGSISSNQVSQRPLAIQ 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566267|ref|XP_003551355.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Glycine max]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/335 (66%), Positives = 262/335 (78%), Gaps = 6/335 (1%)

Query: 1   MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNG-SE 59
           M+SKSE  N+L  DP++  PG+ Y+EPWWRG+GYN ++  +AGAN SNSSSL+CPNG SE
Sbjct: 1   MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPVAQTMAGANASNSSSLECPNGDSE 60

Query: 60  SND-AKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQ 118
           SN+  +S+SN G+NEEDDDA K+SQ  A +   GN+GQ+ Q +Q  AS+ P++R+EC TQ
Sbjct: 61  SNEEGQSLSNSGMNEEDDDATKDSQPAAPN-GTGNYGQEQQGMQHTASSAPSMREECLTQ 119

Query: 119 PPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVY 178
            PQLELVGHSIACA+NPYQDPYYGGMMAAYGHQ +GY  F+GMPHARMPLPLEMAQEPVY
Sbjct: 120 TPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVY 179

Query: 179 VNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDAS 238
           VNAKQY GILRRRQARAKAELE+KLIK RKPYLHESRHQHAMRRARG+GGRFAKKTD   
Sbjct: 180 VNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEG 239

Query: 239 KGNS--EKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNH 296
             +S  EK  G   +  S S SSSGSEP+ SDSAETWNS   QQD   S+ HN  +A  +
Sbjct: 240 SNHSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHNRFKAPCY 299

Query: 297 ANANGGYQNH-GLQASTYHSHLGDRGETGDCSGKQ 330
            N +G Y NH GLQ+S YHS  G+R E  DCSG+Q
Sbjct: 300 QNGSGSYHNHNGLQSSVYHSSSGERLEERDCSGQQ 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527208|ref|XP_003532204.1| PREDICTED: nuclear transcription factor Y subunit A-1-like isoform 1 [Glycine max]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/334 (65%), Positives = 259/334 (77%), Gaps = 6/334 (1%)

Query: 1   MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNG-SE 59
           M+SKSE  N+L  DP++  PG  Y+EPWWRG+GYN ++  +AGAN SNSSSL+CPNG SE
Sbjct: 1   MQSKSETANRLRSDPHSFQPGGVYSEPWWRGIGYNPMAQTMAGANASNSSSLECPNGDSE 60

Query: 60  SND-AKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQ 118
           SN+  +S+SN G+NEEDDDA K+S+  A + + GN+ Q+ Q +Q  AS+ P++R+EC TQ
Sbjct: 61  SNEEGQSLSNSGMNEEDDDATKDSKPAAPNET-GNYEQEQQGMQHTASSPPSMREECLTQ 119

Query: 119 PPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVY 178
            PQLELVGHSIAC++NPYQDPYYGGMMAAYGHQ +GY  F+GMPHARMPLPLEMAQEPVY
Sbjct: 120 TPQLELVGHSIACSTNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVY 179

Query: 179 VNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDAS 238
           VNAKQY GILRRRQARAKAELE+KLIK RKPYLHESRHQHAMRRARG+GGRFAKKT D  
Sbjct: 180 VNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKT-DGE 238

Query: 239 KGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHN-MHEARNHA 297
             N   K   +G     S SSSGSEP+ SDSAETWNS   QQD   S+ HN   EA ++ 
Sbjct: 239 GSNHLGKEKDNGTDSVQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHNSRFEAPSYQ 298

Query: 298 NANGGYQNH-GLQASTYHSHLGDRGETGDCSGKQ 330
           N +G Y NH GLQ+S YHS  G+R E  DCSG+Q
Sbjct: 299 NGSGSYHNHNGLQSSVYHSSSGERVEERDCSGQQ 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527210|ref|XP_003532205.1| PREDICTED: nuclear transcription factor Y subunit A-1-like isoform 2 [Glycine max]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/336 (65%), Positives = 258/336 (76%), Gaps = 8/336 (2%)

Query: 1   MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNG-SE 59
           M+SKSE  N+L  DP++  PG  Y+EPWWRG+GYN ++  +AGAN SNSSSL+CPNG SE
Sbjct: 1   MQSKSETANRLRSDPHSFQPGGVYSEPWWRGIGYNPMAQTMAGANASNSSSLECPNGDSE 60

Query: 60  SND-AKSISNDGLNEEDDDANKESQATASSRSAG--NHGQKNQNVQQGASAMPTIRDECF 116
           SN+  +S+SN G+NEEDDDA K+S+  A + +    NH Q+ Q +Q  AS+ P++R+EC 
Sbjct: 61  SNEEGQSLSNSGMNEEDDDATKDSKPAAPNETGALENH-QEQQGMQHTASSPPSMREECL 119

Query: 117 TQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEP 176
           TQ PQLELVGHSIAC++NPYQDPYYGGMMAAYGHQ +GY  F+GMPHARMPLPLEMAQEP
Sbjct: 120 TQTPQLELVGHSIACSTNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEP 179

Query: 177 VYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDD 236
           VYVNAKQY GILRRRQARAKAELE+KLIK RKPYLHESRHQHAMRRARG+GGRFAKKT D
Sbjct: 180 VYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKT-D 238

Query: 237 ASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHN-MHEARN 295
               N   K   +G     S SSSGSEP+ SDSAETWNS   QQD   S+ HN   EA +
Sbjct: 239 GEGSNHLGKEKDNGTDSVQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHNSRFEAPS 298

Query: 296 HANANGGYQNH-GLQASTYHSHLGDRGETGDCSGKQ 330
           + N +G Y NH GLQ+S YHS  G+R E  DCSG+Q
Sbjct: 299 YQNGSGSYHNHNGLQSSVYHSSSGERVEERDCSGQQ 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478376|ref|XP_002282778.2| PREDICTED: nuclear transcription factor Y subunit A-1 [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/350 (63%), Positives = 260/350 (74%), Gaps = 8/350 (2%)

Query: 1   MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNG-SE 59
           M+S S+  NQ+ P P+  PP + Y+EPWWRGVGYN IS  + G N +NS S +CPNG SE
Sbjct: 1   MQSNSKGPNQIGP-PHTAPPSSVYSEPWWRGVGYNPISTTMTGGNTNNSPSSECPNGGSE 59

Query: 60  SNDAKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQP 119
           SND +S SN GLNEEDDD+ KESQATASS+S GN+GQ++QN+Q  A  +     EC TQP
Sbjct: 60  SNDGQSHSNGGLNEEDDDSIKESQATASSQSNGNYGQEHQNLQHIAPNIQIGSSECLTQP 119

Query: 120 PQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYV 179
           PQLELVGHSIACASNPYQDPYYGGMM AYG QP+ +P  +GM  ARMPLPLEM Q+PVYV
Sbjct: 120 PQLELVGHSIACASNPYQDPYYGGMMTAYGPQPLVHPHLLGMHEARMPLPLEMTQDPVYV 179

Query: 180 NAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKT-DDAS 238
           N KQY GILRRRQ+RAKAELEKKLIKVRKPYLHESRHQHA+RRAR SGGRFAKK+  +AS
Sbjct: 180 NPKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHQHALRRARSSGGRFAKKSAAEAS 239

Query: 239 KGNSEKKGGGSG-IRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHA 297
           K  SE+K    G      S SSSGSE +PSDS ETWNSS+ QQ+  G QAH+ HE   + 
Sbjct: 240 KHASEEKVTALGSAPSPQSVSSSGSERLPSDSTETWNSSSRQQEARGPQAHDTHEPPKYK 299

Query: 298 NANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ 347
           N +G YQ+ G   +T HSH  +RGE      +QW S S++Q SQRP A Q
Sbjct: 300 NGSGYYQSPGDSQTTNHSHTSERGE----EDQQWKSFSADQGSQRPHAFQ 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834809|emb|CAN70549.1| hypothetical protein VITISV_002755 [Vitis vinifera]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/350 (62%), Positives = 257/350 (73%), Gaps = 8/350 (2%)

Query: 1   MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNG-SE 59
           ++S S+  NQ+ P P+  PP + Y+EPWWRGVGYN IS  + G N +NS S +CPNG SE
Sbjct: 102 VKSNSKGPNQIGP-PHTAPPSSVYSEPWWRGVGYNPISTTMTGGNTNNSPSSECPNGGSE 160

Query: 60  SNDAKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQP 119
           SND +S SN GLNEEDDD+ KESQATASS+S GN+GQ++QN+Q  A  +     EC TQP
Sbjct: 161 SNDGQSHSNGGLNEEDDDSIKESQATASSQSNGNYGQEHQNLQHIAPNIQIGSSECLTQP 220

Query: 120 PQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYV 179
           PQLELVGHSIACASNPYQDPYYGGMM AYG QP+ +P  +GM  ARMPLPLEM Q+PVYV
Sbjct: 221 PQLELVGHSIACASNPYQDPYYGGMMTAYGPQPLVHPHLLGMHEARMPLPLEMTQDPVYV 280

Query: 180 NAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASK 239
           N KQY GILRRRQ+RAKAELEKKLIKVRKPYLHESRHQHA+RRAR SGGRFAKK    + 
Sbjct: 281 NPKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHQHALRRARSSGGRFAKKXAAEAS 340

Query: 240 GN-SEKKGGGSG-IRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHA 297
            + SE+K    G      S SSSGSE +PSDS ETWNSS+ QQ+  G QAH+ HE   + 
Sbjct: 341 KHASEEKVTALGSAPSPQSVSSSGSERLPSDSTETWNSSSRQQEARGPQAHDTHEPPKYK 400

Query: 298 NANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ 347
           N +G YQ+ G   +T HSH  +RGE      +QW S S++Q SQRP A Q
Sbjct: 401 NGSGYYQSPGDSQTTNHSHTSERGE----EDQQWKSFSADQGSQRPHAFQ 446

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523189|gb|AFK49647.1| nuclear transcription factor Y subunit A5 [Medicago truncatula]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/353 (63%), Positives = 261/353 (73%), Gaps = 30/353 (8%)

Query: 1   MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNG-SE 59
           M+ KSE  NQ    P++  PG  Y+EPWWRGVGYN ++  ++GAN   SSSLDCPNG SE
Sbjct: 1   MQPKSETANQPRSGPHSFQPGGVYSEPWWRGVGYNPVAQTMSGAN---SSSLDCPNGDSE 57

Query: 60  SND-AKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQ 118
           SN+  +S+SN   NEEDDDA K+SQ  A ++S GN+GQ+ Q +Q  AS+   IR+EC TQ
Sbjct: 58  SNEEGQSLSNSERNEEDDDAAKDSQPAAPNQS-GNYGQE-QGMQNTASSA-VIREECLTQ 114

Query: 119 PPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVY 178
            PQLELVGHSIACA+NPYQDPYYGGMMAAY HQP+GYP F+G+PHARMPLPLEMAQEPVY
Sbjct: 115 TPQLELVGHSIACATNPYQDPYYGGMMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVY 174

Query: 179 VNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDAS 238
           VNAKQY GILRRRQARAKAELE+KLIK RKPYLHESRHQHA+RRARG+GGRFAKKTD  +
Sbjct: 175 VNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEA 234

Query: 239 KGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHAN 298
            G   K  G   +  S S SSSGSE +PSDSAETWNS   +QD  GS            N
Sbjct: 235 SG---KDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGS------------N 279

Query: 299 ANGGY----QNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ 347
            NGG      N+G+Q+S Y    G+R E GDCSG+   SISSN+ASQR LAIQ
Sbjct: 280 ENGGSSYHNNNNGMQSSRYQ---GERVEEGDCSGQLRVSISSNEASQRRLAIQ 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460371|ref|XP_003600467.1| Nuclear transcription factor Y subunit [Medicago truncatula] gi|355489515|gb|AES70718.1| Nuclear transcription factor Y subunit [Medicago truncatula]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/353 (63%), Positives = 261/353 (73%), Gaps = 30/353 (8%)

Query: 1   MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNG-SE 59
           M+ KSE  NQ    P++  PG  Y+EPWWRGVGYN ++  ++GAN   SSSLDCPNG SE
Sbjct: 21  MQPKSETANQPRSGPHSFQPGGVYSEPWWRGVGYNPVAQTMSGAN---SSSLDCPNGDSE 77

Query: 60  SND-AKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQ 118
           SN+  +S+SN   NEEDDDA K+SQ  A ++S GN+GQ+ Q +Q  AS+   IR+EC TQ
Sbjct: 78  SNEEGQSLSNSERNEEDDDAAKDSQPAAPNQS-GNYGQE-QGMQNTASSA-VIREECLTQ 134

Query: 119 PPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVY 178
            PQLELVGHSIACA+NPYQDPYYGGMMAAY HQP+GYP F+G+PHARMPLPLEMAQEPVY
Sbjct: 135 TPQLELVGHSIACATNPYQDPYYGGMMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVY 194

Query: 179 VNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDAS 238
           VNAKQY GILRRRQARAKAELE+KLIK RKPYLHESRHQHA+RRARG+GGRFAKKTD  +
Sbjct: 195 VNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEA 254

Query: 239 KGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHAN 298
            G   K  G   +  S S SSSGSE +PSDSAETWNS   +QD  GS            N
Sbjct: 255 SG---KDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGS------------N 299

Query: 299 ANGGY----QNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ 347
            NGG      N+G+Q+S Y    G+R E GDCSG+   SISSN+ASQR LAIQ
Sbjct: 300 ENGGSSYHNNNNGMQSSRYQ---GERVEEGDCSGQLRVSISSNEASQRRLAIQ 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552340|ref|XP_003544526.1| PREDICTED: nuclear transcription factor Y subunit A-9-like isoform 2 [Glycine max]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/350 (60%), Positives = 247/350 (70%), Gaps = 26/350 (7%)

Query: 1   MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNGSES 60
           M+SKSE  NQL  DP +  P  +Y+EPWWRG+  N +  A++G N+SNSSSL+ PNG   
Sbjct: 1   MQSKSETANQLRSDPRSFAPNQSYSEPWWRGIQCNPVPQAMSGVNISNSSSLERPNGDSE 60

Query: 61  NDAKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQPP 120
           +  +           DDA KE Q TA ++  GN+GQ +Q +Q  +S+ P +RD+C TQ P
Sbjct: 61  SSEED----------DDATKEPQPTAPNQ-PGNYGQDHQALQHSSSSAPLVRDDCLTQAP 109

Query: 121 QLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVN 180
           QLELVGHSIACASN Y    YGGMM A+ HQ +GY  F+GMPHARM LPLEMAQEPVYVN
Sbjct: 110 QLELVGHSIACASNLY----YGGMMIAHVHQQLGYAPFIGMPHARMALPLEMAQEPVYVN 165

Query: 181 AKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD-DASK 239
           AKQY GILRRRQARAKAELEKKLIKVRKPYLHESRHQHA+RRARG+GGRFAKKT+ +AS 
Sbjct: 166 AKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAIRRARGNGGRFAKKTEVEASN 225

Query: 240 GNSEKKGGGSGIRP-SLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHAN 298
             +E+K  G+G  P S S SSSG   +PSDSAETWNS + QQ   GSQ H   E RN+AN
Sbjct: 226 HMNEEKDMGTGQVPLSRSISSSGFGSLPSDSAETWNSPSVQQGARGSQVHERFEERNYAN 285

Query: 299 ANGGYQNHGLQ-ASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ 347
                    LQ +ST   H G+R E GDCSG+Q GSISS   SQR LAIQ
Sbjct: 286 V--------LQSSSTSCLHSGERAEEGDCSGQQRGSISSEHTSQRRLAIQ 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450972|ref|XP_004143236.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Cucumis sativus] gi|449482511|ref|XP_004156306.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Cucumis sativus]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/352 (61%), Positives = 257/352 (73%), Gaps = 16/352 (4%)

Query: 1   MRSKSERTNQLEPDPNAIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNG-SE 59
           M+SKS+  NQLE +P  +   ++++EPWWR +GYN ISP  AG NVSNS+SL+C NG SE
Sbjct: 1   MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASE 60

Query: 60  SNDAKSISNDGLNEEDDD-ANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQ 118
           SND +S+SND LNEEDDD   K+S A+         GQ   N Q   SA P +   C TQ
Sbjct: 61  SNDGQSMSNDDLNEEDDDETTKDSHAS--------FGQVQHNCQHAVSAAPIVHSGCITQ 112

Query: 119 PPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVY 178
           PPQLELVGHSIACASNPYQDPYY G+MAAYGHQP GYP F+GMPHARM LPLE+ QEPV+
Sbjct: 113 PPQLELVGHSIACASNPYQDPYYAGVMAAYGHQP-GYPPFLGMPHARMALPLEVTQEPVF 171

Query: 179 VNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDAS 238
           VNAKQY GILRRRQARAKAE+E KLIKVRKPYLHESRHQHAMRRARGSGGRFAKK +  S
Sbjct: 172 VNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNS 231

Query: 239 KGNSEK-KGGGSG-IRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNH 296
            G++ K K  GSG    S S  SSGS+  P   AETWNSS  QQ+   +Q H  +EAR++
Sbjct: 232 LGSTMKDKDSGSGQAISSHSAGSSGSDAAPCALAETWNSSNGQQE-SRTQLHEAYEARSY 290

Query: 297 ANANGGYQNH-GLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ 347
            N +  + N+   QAS+Y    G+RG+ GDCSG+Q  SIS NQA+QR LAI+
Sbjct: 291 MNGSSQFHNYSSFQASSYGLRSGERGDDGDCSGQQ-RSISENQAAQRRLAIK 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.662	0.845	0.586	2.7e-68
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.628	0.719	0.521	1.1e-62
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.452	0.460	0.436	1.9e-26
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.429	0.784	0.445	1.9e-26
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.394	0.691	0.442	1.4e-25
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.512	0.542	0.4	1.8e-25
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.265	0.298	0.578	3.3e-24
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.403	0.454	0.414	5.3e-24
DICTYBASE|DDB_G0282697	517	nfyA "putative CCAAT-binding t	0.775	0.520	0.287	1.7e-22
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.262	0.338	0.518	2.3e-22

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 139/237 (58%), Positives = 168/237 (70%)

Query:     1 MRSKSERTNQLEPDPN-AIPPGAAYTEPWWRGVGYNSISPALAGANVSNSSSLDCPNGSE 59
             M+SK  R N+ E + + A+     Y EPWW+   +  +  A      SNSSSLDCPNGSE
Sbjct:     1 MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSE 60

Query:    60 SNDAKSISNDG-LNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQ 118
             SND  S S DG LN E+D   K+SQA  SSRS  NHG +  +    A ++  + D+   Q
Sbjct:    61 SNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDP---ALSIRNMHDQPLVQ 117

Query:   119 PPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVY 178
             PP  ELVGH IAC  NPYQDPYYGG+M AYGHQ +G+  ++GMP  R  LPL+MAQEPVY
Sbjct:   118 PP--ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVY 175

Query:   179 VNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD 235
             VNAKQY GILRRR+ARAKAELE+K+I+ RKPYLHESRH+HAMRRAR SGGRFAKK++
Sbjct:   176 VNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSE 232

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 124/238 (52%), Positives = 151/238 (63%)

Query:     1 MRSKSERT-NQLEPDPNAIPPGAAYT-EPWWRGVGYNSISPALAGANVSNSSSLDCPNGS 58
             M SKS+   N+++ + +     +  +  PW R     +   A +     + SS       
Sbjct:     6 MHSKSDSGGNKVDSEVHGTVSSSINSLNPWHRAA---AACNANSSVEAGDKSSKSIALAL 62

Query:    59 ESNDAKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTIRDECFTQ 118
             ESN +KS SN      D+  NKESQ T S +SAG++  KNQ         P         
Sbjct:    63 ESNGSKSPSN-----RDNTVNKESQVTTSPQSAGDYSDKNQESLHHGITQP--------- 108

Query:   119 PPQLELVGHSIACAS-NPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPV 177
             PP  +LVGH++  AS NPYQDPYY G+M AYGH P+G+  + GMPH+RMPLP EMAQEPV
Sbjct:   109 PPHPQLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPV 168

Query:   178 YVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD 235
             +VNAKQY  ILRRRQARAKAELEKKLIK RKPYLHESRHQHAMRR RG+GGRFAKKT+
Sbjct:   169 FVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRFAKKTN 226

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 75/172 (43%), Positives = 96/172 (55%)

Query:    74 EDDDANKESQATASSRSAGNHGQKNQNVQQGASAMP----TIRDECFTQPPQLELVG--- 126
             +D D++       S     + G  N + Q   SA      T R    + P Q  + G   
Sbjct:    64 QDQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTGFPN 123

Query:   127 -HSIACASN---PYQDPYYGGMMAA-YGHQ-PVGYPQFVGMPHARMPLPLEMAQ-EPVYV 179
              H     +N    Y DP+YGG++AA Y  Q P   PQ V M   R+PLP E+ + +PV+V
Sbjct:   124 IHFAPAQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFV 183

Query:   180 NAKQYMGILRRRQARAKAELEKKLIKVRK-PYLHESRHQHAMRRARGSGGRF 230
             NAKQY  I+RRRQ RAK E + KLI+ RK PYLHESRH HA++R RGSGGRF
Sbjct:   184 NAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGGRF 235

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 69/155 (44%), Positives = 92/155 (59%)

Query:    88 SRSAGNHGQKNQNVQQGASAMPTIRD-ECFTQPPQLELVG--HSIACASNPYQDPYYGGM 144
             S + G+H ++ Q        +P+ R+ E           G  +S+A    PY DPYY  +
Sbjct:     9 SDNIGSHEKQEQRDSHFQPPIPSARNYESIVTSLVYSDPGTTNSMAPGQYPYPDPYYRSI 68

Query:   145 MAAYGHQPVG-YPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 203
              A       G + Q +G+    +PLP +  +EPV+VNAKQY GILRRRQ+RA+ E + K+
Sbjct:    69 FAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKV 128

Query:   204 IKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDD 236
             IK RKPYLHESRH HA+RR RG GGRF  AKK D+
Sbjct:   129 IKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDE 163

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 66/149 (44%), Positives = 86/149 (57%)

Query:    93 NHGQKNQNVQQGASAMPTIR--DECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGH 150
             +H +K +   Q    +P+ R  +   T     E + H +     PY DPYY  + A   +
Sbjct:    14 SHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGLY----PYPDPYYRSVFAQQAY 69

Query:   151 QPVGYP----QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKV 206
              P  YP    Q +GM    +PL  +  +EPV+VNAKQY GILRRRQ+RAK E   + IK 
Sbjct:    70 LPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKA 129

Query:   207 RKPYLHESRHQHAMRRARGSGGRF--AKK 233
             +KPY+HESRH HA+RR RG GGRF  AKK
Sbjct:   130 KKPYMHESRHLHAIRRPRGCGGRFLNAKK 158

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 80/200 (40%), Positives = 110/200 (55%)

Query:    45 NVSNSSSLDCPNGSESNDAKSISNDGLNEEDDDANKESQATASSRSA-G-NHGQKNQNVQ 102
             N  N S  D  + S  + A+S SND  +  DD+ +++    A S    G    Q+ +   
Sbjct:    52 NTKNISFQDQDSSSTLSSAQS-SNDVTSSGDDNPSRQISFLAHSDVCKGFEETQRKRFAI 110

Query:   103 QGASAMPTIRDECFTQPPQLELVGHSIACASNPYQDPYYGGMM-AAYGHQP-VGYPQFVG 160
             +  S+   I D   + P +     H        Y DP++GG+M AAY  Q  +  PQ   
Sbjct:   111 KSGSSTAGIAD-IHSSPSKANFSFH--------YADPHFGGLMPAAYLPQATIWNPQMT- 160

Query:   161 MPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHA 219
                 R+PLP ++ + EPV+VNAKQ+  I+RRRQ RAK E + KLIK RKPYLHESRH HA
Sbjct:   161 ----RVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHA 216

Query:   220 MRRARGSGGRF--AKKTDDA 237
             ++R RGSGGRF   KK  ++
Sbjct:   217 LKRPRGSGGRFLNTKKLQES 236

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 55/95 (57%), Positives = 70/95 (73%)

Query:   139 PYYGGMMA-AYGHQ-PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARA 195
             P++ G ++  Y  Q  V +PQ  G+  +RMPLP  + + EP++VNAKQY  ILRRR+ RA
Sbjct:   132 PHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRA 191

Query:   196 KAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 230
             K E + KLIKVRKPYLHESRH HA++R RGSGGRF
Sbjct:   192 KLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRF 226

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 63/152 (41%), Positives = 91/152 (59%)

Query:    93 NHGQKNQNVQQGASAMPTI-RDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAA-YGH 150
             N G+  +N  +  +    + +D  F  P   + +  S+ CA    +  ++ G +A  Y  
Sbjct:    96 NLGKPIENYTKSITTSSMVSQDSVFPAPTSGQ-ISWSLQCA----ETSHFNGFLAPEYAS 150

Query:   151 QPVGYP--QFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVR 207
              P   P  + +G+  +R+PLP  + + EP++VNAKQY  ILRRR+ RAK E + KLIK R
Sbjct:   151 TPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCR 210

Query:   208 KPYLHESRHQHAMRRARGSGGRF--AKKTDDA 237
             KPYLHESRH HA++RARGSGGRF   KK  ++
Sbjct:   211 KPYLHESRHLHALKRARGSGGRFLNTKKLQES 242

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

DICTYBASE|DDB_G0282697 nfyA "putative CCAAT-binding transcription factor, chain A" [Dictyostelium discoideum (taxid:44689)]

 Score = 267 (99.0 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 84/292 (28%), Positives = 124/292 (42%)

Query:    52 LDCPNGSESNDAKSISNDGLNEEDDDANKESQATASSRSAGNHGQKNQNVQQGASAMPTI 111
             +D  N + +N+  S++N   N  ++++N  S    ++ +  N+   N N     ++    
Sbjct:   122 IDYGNNNNNNNTNSMNNSN-NNSNNNSNNNSNNNNNNNNNNNNNNNNNNSNNNNNSNNNN 180

Query:   112 RDECFTQPPQLELVGHSIACASNPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLE 171
              +    Q PQ  L    +    N       G ++ + G+     P    M +ARM    E
Sbjct:   181 FNYNIKQQPQQTLQNQIVNM--N-------GNIITSNGNHHYPTPH---MLYARMA---E 225

Query:   172 MAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFA 231
             + +EP+YVNAKQY  IL+RR ARAK E E KL K RK Y HESRHQHA+RR RG GGRF 
Sbjct:   226 IVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAIRRQRGCGGRFL 285

Query:   232 KKTDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETWNSSASQQDVGGSQAHNMH 291
              K D A                                    N++ +  +   +  +N +
Sbjct:   286 TKADQAKLDAQNAANAAAAAANPNASSTSTTTSNIT------NNNNNNNNNNNTNNNNNN 339

Query:   292 EARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRP 343
                N  N +GG       AS+      D     D +  +  S S NQ+S  P
Sbjct:   340 NNTN-VNGSGGSGGSNKIASSDDDIENDVENDSDSANIKNNSNSPNQSSSSP 390

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
 Identities = 56/108 (51%), Positives = 71/108 (65%)

Query:   134 NPYQDPYYGGMMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEP---VYVNAKQYMGILRR 190
             +P+ + YYG +++AYG Q             R+ +PL+M  E    +YVN+KQY GI+RR
Sbjct:   100 HPHVEQYYG-VVSAYGSQ---------RSSGRVMIPLKMETEEDGTIYVNSKQYHGIIRR 149

Query:   191 RQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAK-KTDDA 237
             RQ+RAKAE   KL + RKPY+H SRH HAMRR RGSGGRF   KT DA
Sbjct:   150 RQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTKTADA 194

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LXV5	NFYA1_ARATH	No assigned EC number	0.5607	0.7752	0.9889	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	2e-33
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	6e-33
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	2e-08

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  117 bits (295), Expect = 2e-33
 Identities = 47/57 (82%), Positives = 49/57 (85%)

Query: 174 QEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 230
            EP+YVNAKQY  ILRRRQARAK E E KLIK RKPYLHESRH+HAMRR RGSGGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  116 bits (293), Expect = 6e-33
 Identities = 46/62 (74%), Positives = 48/62 (77%)

Query: 172 MAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFA 231
             +EPVYVNAKQY  ILRRRQARAK E + KL K RKPYLHESRH HAMRR RGSGGRF 
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 232 KK 233
             
Sbjct: 61  NT 62

Length = 62

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 173 AQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAK 232
           + +P YVNAKQ   I +R   R    L+  +   R  YLHESRH+HAM R R   GRF  
Sbjct: 157 SFQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLT 214

Query: 233 KTD 235
            ++
Sbjct: 215 ASE 217

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.77
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	82.88

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=3.6e-46  Score=354.23  Aligned_cols=211  Identities=35%  Similarity=0.493  Sum_probs=153.7

Q ss_pred             CCCCccccccccccCCCCCcccccCCCC-CCCCCCCCC--CCCCCc-cccccccCCCCCcccccccchhhhcccCc----
Q 019003           19 PPGAAYTEPWWRGVGYNSISPALAGANV-SNSSSLDCP--NGSESN-DAKSISNDGLNEEDDDANKESQATASSRS----   90 (347)
Q Consensus        19 ~~~~~~s~PWW~~~g~~~v~~a~~g~~~-s~sss~e~~--Ngs~sn-~~qs~sn~~~~~e~dda~kesq~t~~~qs----   90 (347)
                      ....+++.|||+.++....+.....+.. ....++-.+  +|.++. +.++.+-+.++.+-+.++++.+.+++..+    
T Consensus        16 ~~~~~~q~~~~~~~~~~~~p~~~~s~~~~q~~~s~~~~s~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~s~~s~~~~   95 (307)
T KOG1561|consen   16 KRREARQKPEERGVQTTKKPYLHESGHKHQMGPGGRFLSADGVSKLRAQEAANGGSTGDDVNATNNDAQVAATVSSEVTH   95 (307)
T ss_pred             ccccccccccccccccccccccCcccccccccccccccCccccccccccccccccccccccccccccceeeeccCCccee
Confidence            3456689999998886665443332222 212222222  555554 23333334444444556788888887766    


Q ss_pred             CCCccccccccccccCCCCCccCCCCCCCCcc--ccccccccccC-CCCCCCccccccc---ccCCCCCC--CCcccCCC
Q 019003           91 AGNHGQKNQNVQQGASAMPTIRDECFTQPPQL--ELVGHSIACAS-NPYQDPYYGGMMA---AYGHQPVG--YPQFVGMP  162 (347)
Q Consensus        91 ~g~~gqe~~~~~~~~s~~~~~~~~~~~~~~q~--el~g~sia~~~-~py~Dpyygg~~a---aYg~q~~~--~p~~~Gm~  162 (347)
                      ..+++...+...   +++...   ...+.+.+  +.+.+..++++ +||.+|||+|++.   +|++|+..  .+++.||.
T Consensus        96 v~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~  169 (307)
T KOG1561|consen   96 VEGYADSNDSRP---SSISNS---SESPAPINSATASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPV  169 (307)
T ss_pred             cccccccccccc---cccccc---ccccCcccccccccccccccccCCCCCCcccceecccccccCCCCccccccccCCC
Confidence            556666553322   111111   11122333  45778777775 7999999999999   89999874  67889998


Q ss_pred             C-CCCCCCCCCCC-CceeechhhhHHHHHHHHHHHHHHHhhhhhhhCCCcchhchhHHHhhcCCCCCCcccccCC
Q 019003          163 H-ARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD  235 (347)
Q Consensus       163 ~-~R~pLP~e~~e-ePvyVNaKQY~rIlrRRq~Rak~e~~~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~~~e  235 (347)
                      . .|+|||.++.| |||||||||||||||||++|||||+++||+|.||||||||||+|||||+||+|||||++++
T Consensus       170 ~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~  244 (307)
T KOG1561|consen  170 PHDRTPLPQTDSETEPLYVNAKQYHRILRRRQARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKE  244 (307)
T ss_pred             CcCcccCCccccCCCceeEcHHHHHHHHHHHHHHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhh
Confidence            8 99999999876 9999999999999999999999999999999999999999999999999999999999988

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=2.1e-36  Score=231.86  Aligned_cols=62  Identities=74%  Similarity=1.065  Sum_probs=60.1

Q ss_pred             CCCCceeechhhhHHHHHHHHHHHHHHHhhhhhhhCCCcchhchhHHHhhcCCCCCCccccc
Q 019003          172 MAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKK  233 (347)
Q Consensus       172 ~~eePvyVNaKQY~rIlrRRq~Rak~e~~~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~~  233 (347)
                      ++++|||||||||++|||||++|||+|++++|++.||||||||||+|||+|+||+|||||++
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=3.1e-34  Score=217.68  Aligned_cols=57  Identities=79%  Similarity=1.182  Sum_probs=56.2

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhhhh-hhhCCCcchhchhHHHhhcCCCCCCcc
Q 019003          174 QEPVYVNAKQYMGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGSGGRF  230 (347)
Q Consensus       174 eePvyVNaKQY~rIlrRRq~Rak~e~~~kl-~k~rk~YlHESRH~HAm~R~RG~gGRF  230 (347)
                      ++|||||||||++|||||++|||+|+++++ ++.||+|||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            689999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.77  E-value=1.4e-19  Score=167.30  Aligned_cols=61  Identities=43%  Similarity=0.551  Sum_probs=55.8

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHHhhhhhhhCCCcchhchhHHHhhcCCCCCCcccccCC
Q 019003          173 AQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD  235 (347)
Q Consensus       173 ~eePvyVNaKQY~rIlrRRq~Rak~e~~~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~~~e  235 (347)
                      .++|.|||||||++|+|||-+|++++.  +|+-.|..|||||||+|||+|+|+++||||+++|
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~--~~~~~r~~ylHesrhkham~r~r~ptgrfLtasE  217 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASE  217 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHH--HhhhhhhhccccchhhhhhhcccCCCcceecHHh
Confidence            588999999999999999999988664  5667777799999999999999999999999988

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=82.88  E-value=1.5  Score=32.61  Aligned_cols=28  Identities=43%  Similarity=0.529  Sum_probs=23.7

Q ss_pred             CCCcchhchhHHHhhcCCCCCCcccccCC
Q 019003          207 RKPYLHESRHQHAMRRARGSGGRFAKKTD  235 (347)
Q Consensus       207 rk~YlHESRH~HAm~R~RG~gGRFl~~~e  235 (347)
                      -|.-.+++|..=|..|+|-. |||++.+|
T Consensus        18 ~kkirY~~Rk~~A~~R~Rvk-GRFvk~~e   45 (45)
T PF06203_consen   18 EKKIRYESRKAVADKRPRVK-GRFVKKSE   45 (45)
T ss_pred             cccCCcchHHHHHhhCCccC-CcccCCCC
Confidence            34567899999999999986 99998764

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	347
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		7e-16
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		2e-13

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 46/57 (80%)
Query: 174 QEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 230
           +EP+YVNAKQY  IL+RRQARAK E E K+ K R+ YLHESRH+HAM R RG GGRF
Sbjct: 2   EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRF 58

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 174 QEPVYVNAKQYMGILRRRQARAKAELEKKLI-KVRKPYLHESRHQHAMRRARGSGGRF 230
           + P+YVNAKQ+  IL+RR AR K E + +L  K RKPYLHESRH HAMRR RG GGRF
Sbjct: 2   ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRF 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=2.2e-36  Score=231.93  Aligned_cols=62  Identities=61%  Similarity=0.978  Sum_probs=58.5

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhhhhh-hhCCCcchhchhHHHhhcCCCCCCcccccCC
Q 019003          174 QEPVYVNAKQYMGILRRRQARAKAELEKKLI-KVRKPYLHESRHQHAMRRARGSGGRFAKKTD  235 (347)
Q Consensus       174 eePvyVNaKQY~rIlrRRq~Rak~e~~~kl~-k~rk~YlHESRH~HAm~R~RG~gGRFl~~~e  235 (347)
                      |+|||||||||++|||||++|||+|++++|+ +.||||||||||+|||+|+||+|||||+++|
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            7999999999999999999999999999985 8899999999999999999999999999875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00