Citrus Sinensis ID: 019008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLYH
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHcHHHHHHHHHHHccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MQSIENLVTQIQglssnasdITALKDYLKAAEDLLRSESTRLLSFldqldpskhslgylyflepcmycsitkerANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLleapirgvgpMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVleddiyeinlprdffLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIhhgqfsstlpkytssAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNRekfesdnnlgLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLYH
Flexible Loop (DISEMBL)
MQSIENLVTQiqglssnasdITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNrekfesdnnlglVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLYH
Low Complexity Region (SEG)
MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLYH
Disordered region (IsUnstruct)
********************ITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYT*****RNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLY*
Disordered Region (DISOPRED)
**SIENLVTQIQGLS******TALKDYLK************LLSFLDQLDPSKHSLGYLYFLEPCMYCSI*KERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLY*
Disordered Region (DISEMBL)
MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLYH
Disordered Region (DISPRO)
*QSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q8W575	429	COP9 signalosome complex	no	no	0.974	0.787	0.636	1e-123
Q6P2U9	423	COP9 signalosome complex	yes	no	0.959	0.787	0.409	1e-62
Q5RFS2	423	COP9 signalosome complex	yes	no	0.959	0.787	0.406	2e-62
Q4R898	423	COP9 signalosome complex	N/A	no	0.959	0.787	0.406	2e-62
Q9UNS2	423	COP9 signalosome complex	yes	no	0.959	0.787	0.406	2e-62
Q68FW9	423	COP9 signalosome complex	yes	no	0.959	0.787	0.406	3e-62
O88543	423	COP9 signalosome complex	yes	no	0.959	0.787	0.406	3e-62
A6H7B5	423	COP9 signalosome complex	yes	no	0.959	0.787	0.403	5e-62
Q5ZJF1	423	COP9 signalosome complex	yes	no	0.959	0.787	0.406	6e-62
Q28IV6	423	COP9 signalosome complex	yes	no	0.959	0.787	0.406	6e-62

>sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3 PE=1 SV=2

 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/338 (63%), Positives = 261/338 (77%)

Query: 1   MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
           + S+E ++T IQGLS +  D++AL D L+ A+D LR+E     S LDQLD SKHSLGYLY
Sbjct: 5   VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64

Query: 61  FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
           FLE      ++KE+A   +PIIARFI SC A QIR    KF+++CK  KD V+ L  P+R
Sbjct: 65  FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLR 124

Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
           GVGP+L A++K+Q S++ LT LHP+ LQLCL AK YK+G S+L DDI EI+ PRDFFLY 
Sbjct: 125 GVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYS 184

Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
           YYGGMI IG KRF+KALELL+NVVTAPM  +NAIA+EAYKKYILVSLIH+GQF++TLPK 
Sbjct: 185 YYGGMICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFTNTLPKC 244

Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
            S+AAQR+ KN++ PY+EL N YN GKI ELE  V     +FE D NLGLVKQ VSS+YK
Sbjct: 245 ASTAAQRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYK 304

Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           RNI RLTQ YLTLSLQDIAN VQL ++KEAEMHVLQM+
Sbjct: 305 RNILRLTQKYLTLSLQDIANMVQLGNAKEAEMHVLQMI 342

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and auxin and jasmonate responses. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. It is involved in repression of photomorphogenesis in darkness by regulating the activity of COP1-containing Ubl ligase complexes. The complex is also required for degradation of IAA6 by regulating the activity of the Ubl ligase SCF-TIR complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/342 (40%), Positives = 198/342 (57%), Gaps = 9/342 (2%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
           ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct: 4   ALEQFVNNVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDIQEHSLGVLAVL 62

Query: 63  EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
               +         TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct: 63  F-VKFSMPNIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
             +  AI K+Q +T  LT++H +  QLCLLAKC+K  +  LE D+ +I   N   D   F
Sbjct: 122 SILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKENGAYDAKHF 181

Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
             Y YYGGMI+ G K F +AL      +T P  +++ I +EAYKKYILVSLI HG+    
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFFEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240

Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
           LPKYTS    R +K  S  Y EL   Y T    EL   V  + E F  DNN GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQIYATNNPAELRALVNKHSETFTRDNNTGLVKQCLS 300

Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Danio rerio (taxid: 7955)

>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
           ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct: 4   ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query: 63  EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
               +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct: 63  F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
           G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
             Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
           LPKYTS    R +K  S  Y EL   Y+T    EL   V  + E F  DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300

Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Pongo abelii (taxid: 9601)

>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3 PE=2 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
           ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct: 4   ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query: 63  EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
               +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct: 63  F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
           G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
             Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
           LPKYTS    R +K  S  Y EL   Y+T    EL   V  + E F  DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300

Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Essential to maintain the survival of epiblast cells and thus the development of the postimplantation embryo.

Macaca fascicularis (taxid: 9541)

>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
           ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct: 4   ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query: 63  EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
               +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct: 63  F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
           G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
             Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
           LPKYTS    R +K  S  Y EL   Y+T    EL   V  + E F  DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300

Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.

Homo sapiens (taxid: 9606)

>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3 PE=2 SV=1

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
           ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct: 4   ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query: 63  EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
               +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct: 63  F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
           G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct: 122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
             Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
           LPKYTS    R +K  S  Y EL   Y+T    EL   V  + E F  DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300

Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Essential to maintain the survival of epiblast cells and thus the development of the postimplantation embryo.

Rattus norvegicus (taxid: 10116)

>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1 SV=3

 Score =  239 bits (609), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
           ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct: 4   ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query: 63  EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
               +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct: 63  F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
           G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct: 122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
             Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
           LPKYTS    R +K  S  Y EL   Y+T    EL   V  + E F  DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVSKHSETFTRDNNMGLVKQCLS 300

Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Essential to maintain the survival of epiblast cells and thus the development of the postimplantation embryo.

Mus musculus (taxid: 10090)

>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1

 Score =  238 bits (607), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 138/342 (40%), Positives = 202/342 (59%), Gaps = 9/342 (2%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
           ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct: 4   ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query: 63  EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
               +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct: 63  F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
           G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct: 122 GVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDAKHF 181

Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
             Y YYGGM++ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct: 182 LCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
           LPKYTS    R +K  S  Y EL   Y+T    EL + V  + E F  DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRSLVTKHSEIFTRDNNMGLVKQCLS 300

Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. Essential to maintain the survival of epiblast cells and thus the development of the postimplantation embryo.

Bos taurus (taxid: 9913)

>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2 SV=1

 Score =  238 bits (606), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
           ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct: 4   ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query: 63  EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
               +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct: 63  F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
             +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct: 122 SILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
             Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
           LPKYTS    R +K  S  Y EL   Y+T K  EL   V  + E F  DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNKPSELRNLVNKHSETFTRDNNMGLVKQCLS 300

Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Gallus gallus (taxid: 9031)

>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3 PE=2 SV=1

 Score =  238 bits (606), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/342 (40%), Positives = 201/342 (58%), Gaps = 9/342 (2%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
           ++E  V  ++ LSS    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct: 4   ALEQFVNSVRQLSSQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query: 63  EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
               +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct: 63  F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
             +  AI K+Q +   LT++H +  QL LLAKC+K  L+ L+ D+ +I   N   D   F
Sbjct: 122 CVLRQAIDKMQMNANQLTSIHADLCQLSLLAKCFKPALAYLDVDMMDICKENGAYDAKPF 181

Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
             Y YYGGMI+ G K F +AL      +T P  +++ I +EAYKKYILVSLI HG+    
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240

Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
           LPKYTS    R +K  S  Y EL   Y+T    EL   V  + E F  DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNETFTRDNNMGLVKQCLS 300

Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ ++EAE +VL M+
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMI 342

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
255536979	427	26S proteasome regulatory subunit S3, pu	0.968	0.786	0.804	1e-159
225452159	424	PREDICTED: COP9 signalosome complex subu	0.974	0.797	0.754	1e-149
224060219	423	predicted protein [Populus trichocarpa]	0.971	0.796	0.745	1e-147
356511828	423	PREDICTED: COP9 signalosome complex subu	0.974	0.799	0.742	1e-147
356511830	423	PREDICTED: COP9 signalosome complex subu	0.974	0.799	0.739	1e-147
224141257	424	predicted protein [Populus trichocarpa]	0.974	0.797	0.733	1e-145
356571399	423	PREDICTED: COP9 signalosome complex subu	0.974	0.799	0.733	1e-144
356571401	425	PREDICTED: COP9 signalosome complex subu	0.968	0.790	0.735	1e-144
449441398	423	PREDICTED: COP9 signalosome complex subu	0.971	0.796	0.707	1e-138
449495275	423	PREDICTED: LOW QUALITY PROTEIN: COP9 sig	0.971	0.796	0.704	1e-136

>gi|255536979|ref|XP_002509556.1| 26S proteasome regulatory subunit S3, putative [Ricinus communis] gi|223549455|gb|EEF50943.1| 26S proteasome regulatory subunit S3, putative [Ricinus communis]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/337 (80%), Positives = 305/337 (90%), Gaps = 1/337 (0%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSES-TRLLSFLDQLDPSKHSLGYLYF 61
           SIE+LVTQIQGLSS+A+DI+AL +YLK A+D L S+S TRLL FLDQLDPS HSLGYLYF
Sbjct: 5   SIESLVTQIQGLSSSATDISALHNYLKQADDSLHSDSPTRLLPFLDQLDPSVHSLGYLYF 64

Query: 62  LEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRG 121
           LE C    I+KE+A TLV I+ARF+TSC+A+QIR  P+KFI+VCKR+KDQV+LLE P+RG
Sbjct: 65  LEACTSGPISKEQARTLVLILARFVTSCAADQIRLAPDKFISVCKRFKDQVMLLEEPMRG 124

Query: 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCY 181
           V P+L A+RK+QSS+ HLTTLHPEFLQLCLL+KCYK GLS+LEDDI+E++ PRD FLY Y
Sbjct: 125 VAPLLAAVRKLQSSSVHLTTLHPEFLQLCLLSKCYKTGLSILEDDIFEVDQPRDLFLYSY 184

Query: 182 YGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYT 241
           YGGM+ IGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYIL SLIH GQFS++LPKY 
Sbjct: 185 YGGMVCIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILASLIHQGQFSTSLPKYA 244

Query: 242 SSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKR 301
           SSAAQRNLKNF QPY+EL N+Y+TGKI ELETYVQTNREKFESDNNLGLVKQVVSSMYKR
Sbjct: 245 SSAAQRNLKNFCQPYIELANSYSTGKIAELETYVQTNREKFESDNNLGLVKQVVSSMYKR 304

Query: 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           NIQRLTQTYLTLSLQDIANTVQLNS KEAEMHVLQM+
Sbjct: 305 NIQRLTQTYLTLSLQDIANTVQLNSPKEAEMHVLQMI 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452159|ref|XP_002263731.1| PREDICTED: COP9 signalosome complex subunit 3 [Vitis vinifera] gi|296090247|emb|CBI40066.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/338 (75%), Positives = 291/338 (86%)

Query: 1   MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
           M S+E +VTQIQGLS  + DI+ L   LK A+DLL +ESTRL  FL+QLDPS H+LGYLY
Sbjct: 1   MDSVEAVVTQIQGLSGGSGDISLLHSLLKQADDLLHNESTRLAPFLEQLDPSIHTLGYLY 60

Query: 61  FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
            LE C    I KE+AN LV  IA FI +CSAEQI   P+KF+++CKR KDQV+LLEAP+R
Sbjct: 61  LLEACTSTPIPKEQANQLVLSIANFINNCSAEQIHLAPDKFVSLCKRLKDQVILLEAPMR 120

Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
           GV PMLTA+RK+QS++E LT LHP+FL LCLLAKCYK GL +LEDDI+E++ PRDFFLYC
Sbjct: 121 GVAPMLTAVRKLQSASELLTVLHPDFLLLCLLAKCYKTGLCILEDDIFEVDQPRDFFLYC 180

Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
           YYGGMI IGQKRFRKALELLHNVVTAPMS+INAIAVEAYKKYILVSLIH+GQFS+T PKY
Sbjct: 181 YYGGMICIGQKRFRKALELLHNVVTAPMSTINAIAVEAYKKYILVSLIHNGQFSTTFPKY 240

Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
           TSS AQRNLKNFSQPY++L N+Y++GKI E E  +QTNREKFE+D NLGLVKQVVSSMYK
Sbjct: 241 TSSVAQRNLKNFSQPYLDLANSYSSGKISEPEKCIQTNREKFEADKNLGLVKQVVSSMYK 300

Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           RNIQRLTQTYLTLSLQDIANTVQLNS KEAEMHVLQM+
Sbjct: 301 RNIQRLTQTYLTLSLQDIANTVQLNSPKEAEMHVLQMI 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060219|ref|XP_002300091.1| predicted protein [Populus trichocarpa] gi|222847349|gb|EEE84896.1| predicted protein [Populus trichocarpa]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/338 (74%), Positives = 298/338 (88%), Gaps = 1/338 (0%)

Query: 1   MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
           M ++E+LV QIQGLSS+A D++ L  +LK A++ L +ESTRLL FL+QLDP+ HSLGYLY
Sbjct: 1   MATVESLVAQIQGLSSSAGDLSLLLTHLKQADEFLHNESTRLLPFLEQLDPTLHSLGYLY 60

Query: 61  FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
            LE C    +T ++A  LV I++RF+TSC A+QIR  PEKFI VCK +KDQVL+LEAPIR
Sbjct: 61  ILEACTSWPVTNDQARRLVLILSRFLTSCVADQIRLAPEKFIAVCKSFKDQVLMLEAPIR 120

Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
           GV P+L A++K++SS EHLTTLHP+FLQLCLLAKCYK GLS+LEDDI+E++ PRDF+LYC
Sbjct: 121 GVVPLLEAVKKLRSS-EHLTTLHPDFLQLCLLAKCYKTGLSILEDDIFEVDQPRDFYLYC 179

Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
           YYGGMI IGQKRF+KALELLHNVVTAPMSSINAIAVEA+KKY+LVSLI++GQFS++LPKY
Sbjct: 180 YYGGMICIGQKRFQKALELLHNVVTAPMSSINAIAVEAFKKYVLVSLIYNGQFSTSLPKY 239

Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
           TSSAAQRNLK   QPY+EL NTY+ GKI ELE Y+QTNREKF+SDNNLGLVKQVV+SMYK
Sbjct: 240 TSSAAQRNLKTICQPYIELANTYSIGKISELEPYIQTNREKFDSDNNLGLVKQVVTSMYK 299

Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           RNIQRLTQTYLTLSLQDIANTVQL+S KEAEMHVLQM+
Sbjct: 300 RNIQRLTQTYLTLSLQDIANTVQLSSPKEAEMHVLQMI 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511828|ref|XP_003524624.1| PREDICTED: COP9 signalosome complex subunit 3-like isoform 1 [Glycine max]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/338 (74%), Positives = 285/338 (84%)

Query: 1   MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
           M  +E LV QIQGLSS+  D+T L   LK A+D LRSESTRL   L QLDPS HSLG+LY
Sbjct: 1   MDPLEALVAQIQGLSSSPGDLTRLHTVLKQADDSLRSESTRLAPILTQLDPSIHSLGFLY 60

Query: 61  FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
            LE  M   +TK +A  +VPI+ RFI +CS EQIR  P+KF++VCKR KDQV+LLEAPIR
Sbjct: 61  ILEASMTGPVTKTQAEVVVPIVTRFIGACSTEQIRLAPDKFLSVCKRLKDQVMLLEAPIR 120

Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
           GV P+  A+RK+Q+S EHLT LH EFL LCLLAKCYK GLS+L+DD++E++ PRD FLYC
Sbjct: 121 GVAPLFNALRKLQASAEHLTPLHSEFLLLCLLAKCYKTGLSILDDDVFEVDQPRDLFLYC 180

Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
           YYGGMI IGQKRF+KAL+LLHNVVTAPMS+INAIAVEAYKKYILVSLI HGQFS++LPKY
Sbjct: 181 YYGGMICIGQKRFQKALDLLHNVVTAPMSTINAIAVEAYKKYILVSLIRHGQFSTSLPKY 240

Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
           +SS AQRNLKNF QPY+EL N+Y TGKI ELE YV+ N EKFESDNNLGLVKQVVSSMYK
Sbjct: 241 SSSTAQRNLKNFCQPYVELANSYGTGKIAELEAYVKANAEKFESDNNLGLVKQVVSSMYK 300

Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           RNIQRLTQTYLTLSLQDIANTVQLNS KEAEMHVLQM+
Sbjct: 301 RNIQRLTQTYLTLSLQDIANTVQLNSPKEAEMHVLQMI 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511830|ref|XP_003524625.1| PREDICTED: COP9 signalosome complex subunit 3-like isoform 2 [Glycine max]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/338 (73%), Positives = 285/338 (84%)

Query: 1   MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
           M  +E LV QIQGLSS+  D+T L   LK A+D LRSESTRL   L QLDPS HSLG+LY
Sbjct: 1   MDPLEALVAQIQGLSSSPGDLTRLHTVLKQADDSLRSESTRLAPILTQLDPSIHSLGFLY 60

Query: 61  FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
            LE  M   +TK +A  +VPI+ RFI +CS EQIR  P+KF++VC+R KDQV+LLEAPIR
Sbjct: 61  ILEASMTGPVTKTQAEVVVPIVTRFIGACSTEQIRLAPDKFLSVCRRLKDQVMLLEAPIR 120

Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
           GV P+  A+RK+Q+S EHLT LH EFL LCLLAKCYK GLS+L+DD++E++ PRD FLYC
Sbjct: 121 GVAPLFNALRKLQASAEHLTPLHSEFLLLCLLAKCYKTGLSILDDDVFEVDQPRDLFLYC 180

Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
           YYGGMI IGQKRF+KAL+LLHNVVTAPMS+INAIAVEAYKKYILVSLI HGQFS++LPKY
Sbjct: 181 YYGGMICIGQKRFQKALDLLHNVVTAPMSTINAIAVEAYKKYILVSLIRHGQFSTSLPKY 240

Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
           +SS AQRNLKNF QPY+EL N+Y TGKI ELE YV+ N EKFESDNNLGLVKQVVSSMYK
Sbjct: 241 SSSTAQRNLKNFCQPYVELANSYGTGKIAELEAYVKANAEKFESDNNLGLVKQVVSSMYK 300

Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           RNIQRLTQTYLTLSLQDIANTVQLNS KEAEMHVLQM+
Sbjct: 301 RNIQRLTQTYLTLSLQDIANTVQLNSPKEAEMHVLQMI 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141257|ref|XP_002323991.1| predicted protein [Populus trichocarpa] gi|222866993|gb|EEF04124.1| predicted protein [Populus trichocarpa]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/338 (73%), Positives = 292/338 (86%)

Query: 1   MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
           M + E+LV QIQGLSSNA D+  L  +LK A+++L +ESTRLL+FL+QLDP+ HSLGYLY
Sbjct: 1   MATAESLVAQIQGLSSNAVDLGLLSIHLKKADEVLHNESTRLLAFLEQLDPTLHSLGYLY 60

Query: 61  FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
           FLE C    +T E+A  LV I++RF+T C A+QIR   EKFI V KR+KDQVL+LE P+R
Sbjct: 61  FLEACTSGPVTNEQARRLVLILSRFLTCCVADQIRLASEKFIAVSKRFKDQVLMLEVPMR 120

Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
           GV P+L A++K++SS+EHLT LHP+FLQLCLLAKCYK GLS+LEDDI+E++ PRDFFLYC
Sbjct: 121 GVAPLLEAVKKLRSSSEHLTALHPDFLQLCLLAKCYKTGLSILEDDIFEVDQPRDFFLYC 180

Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
           YYGGMI IGQK F+KALELLHNVVTAPMSSINAIAVEA+KKYILVSLI + QFS++LPKY
Sbjct: 181 YYGGMICIGQKHFQKALELLHNVVTAPMSSINAIAVEAFKKYILVSLIQNRQFSTSLPKY 240

Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
           TSSAAQRNLK   QPYMEL ++Y++GK+ ELETY+QTNREKFESDNN GLVKQVVSSMYK
Sbjct: 241 TSSAAQRNLKTLCQPYMELASSYSSGKVSELETYIQTNREKFESDNNHGLVKQVVSSMYK 300

Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           RNIQRLTQTYLTLSLQDIA  VQL+S KEAEMHVLQM+
Sbjct: 301 RNIQRLTQTYLTLSLQDIAKIVQLSSPKEAEMHVLQMI 338

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571399|ref|XP_003553864.1| PREDICTED: COP9 signalosome complex subunit 3-like isoform 1 [Glycine max]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/338 (73%), Positives = 282/338 (83%)

Query: 1   MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
           M  +E LV QIQGLSS   D+T L   LK A+D LRSESTRL   L QLDPS HSLG+LY
Sbjct: 1   MDPLEALVAQIQGLSSTPGDLTRLHSVLKQADDSLRSESTRLAPILTQLDPSIHSLGFLY 60

Query: 61  FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
            LE  M   +TK +A T+VPI+ RFI +CS EQIR  P+KF++VCKR KDQV+LLEAPIR
Sbjct: 61  ILEASMTDPVTKTQAETVVPIVTRFIGACSPEQIRLAPDKFLSVCKRLKDQVMLLEAPIR 120

Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
           GV P+ TA+RK+Q STEHLT LH EFL LCLLAKCYK GLS+L+DD++E++ PRD FLYC
Sbjct: 121 GVAPLFTALRKLQVSTEHLTPLHSEFLLLCLLAKCYKTGLSILDDDVFEVDQPRDLFLYC 180

Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
           YYGGMI IGQK F+KAL+LLHNVVTAPMS+INAIAVEAYKKYILVSLI HGQFS++LPKY
Sbjct: 181 YYGGMICIGQKHFQKALDLLHNVVTAPMSTINAIAVEAYKKYILVSLIRHGQFSTSLPKY 240

Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
           +SS AQRNLKNF QPY+EL N+Y TG+I ELE Y + N EKFESDNNLGLV QVVSSMYK
Sbjct: 241 SSSTAQRNLKNFCQPYVELANSYGTGQIEELEAYARANAEKFESDNNLGLVNQVVSSMYK 300

Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           RNIQRLTQTYLTLSL DIA+TVQLNS KEAEMHVLQM+
Sbjct: 301 RNIQRLTQTYLTLSLHDIASTVQLNSPKEAEMHVLQMI 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571401|ref|XP_003553865.1| PREDICTED: COP9 signalosome complex subunit 3-like isoform 2 [Glycine max]

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/336 (73%), Positives = 281/336 (83%)

Query: 3   SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
           S + LV QIQGLSS   D+T L   LK A+D LRSESTRL   L QLDPS HSLG+LY L
Sbjct: 5   SFQALVAQIQGLSSTPGDLTRLHSVLKQADDSLRSESTRLAPILTQLDPSIHSLGFLYIL 64

Query: 63  EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
           E  M   +TK +A T+VPI+ RFI +CS EQIR  P+KF++VCKR KDQV+LLEAPIRGV
Sbjct: 65  EASMTDPVTKTQAETVVPIVTRFIGACSPEQIRLAPDKFLSVCKRLKDQVMLLEAPIRGV 124

Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYY 182
            P+ TA+RK+Q STEHLT LH EFL LCLLAKCYK GLS+L+DD++E++ PRD FLYCYY
Sbjct: 125 APLFTALRKLQVSTEHLTPLHSEFLLLCLLAKCYKTGLSILDDDVFEVDQPRDLFLYCYY 184

Query: 183 GGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTS 242
           GGMI IGQK F+KAL+LLHNVVTAPMS+INAIAVEAYKKYILVSLI HGQFS++LPKY+S
Sbjct: 185 GGMICIGQKHFQKALDLLHNVVTAPMSTINAIAVEAYKKYILVSLIRHGQFSTSLPKYSS 244

Query: 243 SAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRN 302
           S AQRNLKNF QPY+EL N+Y TG+I ELE Y + N EKFESDNNLGLV QVVSSMYKRN
Sbjct: 245 STAQRNLKNFCQPYVELANSYGTGQIEELEAYARANAEKFESDNNLGLVNQVVSSMYKRN 304

Query: 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           IQRLTQTYLTLSL DIA+TVQLNS KEAEMHVLQM+
Sbjct: 305 IQRLTQTYLTLSLHDIASTVQLNSPKEAEMHVLQMI 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441398|ref|XP_004138469.1| PREDICTED: COP9 signalosome complex subunit 3-like [Cucumis sativus]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/338 (70%), Positives = 287/338 (84%), Gaps = 1/338 (0%)

Query: 1   MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
           M ++E LV QIQGLSS A DI+ L   LK +E+LL +E++RL S L QLD SKHSLGYLY
Sbjct: 1   MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60

Query: 61  FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
            LE C    I++E++++++  I+RFI+ C+ EQIR  PEKF++VCKR+KDQV+  EAPIR
Sbjct: 61  ILEACTSVPISQEQSSSILLTISRFISCCNPEQIRLAPEKFVSVCKRFKDQVIQ-EAPIR 119

Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
           GV P+LTA+RK+Q+S+EHLTTLHPEFL LCLLAK YK G S+L++DI E++ PRD FLYC
Sbjct: 120 GVAPLLTAVRKLQTSSEHLTTLHPEFLLLCLLAKSYKTGRSILDNDILEVDQPRDLFLYC 179

Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
           YYGGMI +G K F KALELLHNVVTAPM S+NAIAVEAYKKYILVSLI++GQFS++LPKY
Sbjct: 180 YYGGMICVGLKLFHKALELLHNVVTAPMQSMNAIAVEAYKKYILVSLIYNGQFSTSLPKY 239

Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
           TSS AQRNLKNF QPY+EL N+Y+TG + EL+T  QTNR+KFESDNNLGLVKQ VSSMYK
Sbjct: 240 TSSVAQRNLKNFCQPYIELANSYSTGNVEELDTVFQTNRQKFESDNNLGLVKQAVSSMYK 299

Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           RNIQRLTQTYLTLSLQDIA+TV+LNS KEAEMHVLQM+
Sbjct: 300 RNIQRLTQTYLTLSLQDIASTVKLNSPKEAEMHVLQMI 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495275|ref|XP_004159785.1| PREDICTED: LOW QUALITY PROTEIN: COP9 signalosome complex subunit 3-like [Cucumis sativus]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/338 (70%), Positives = 286/338 (84%), Gaps = 1/338 (0%)

Query: 1   MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
           M ++E LV QIQGLSS A DI+ L   LK +E+LL +E++RL S L QLD SKHSLGYLY
Sbjct: 1   MGTVEVLVAQIQGLSSTAGDISRLHTLLKQSEELLHAETSRLPSALAQLDASKHSLGYLY 60

Query: 61  FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
            LE C    I++E++++++  I+RFI+ C+ EQIR  PEKF++VCKR+KDQV+  EAPIR
Sbjct: 61  ILEACTSVPISQEQSSSILLTISRFISCCNPEQIRLAPEKFVSVCKRFKDQVIQ-EAPIR 119

Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
           GV P+LTA+RK+Q+S+EHLTTLHPEFL LCLLAK YK G S+L++DI E++ PR  FLYC
Sbjct: 120 GVAPLLTAVRKLQTSSEHLTTLHPEFLLLCLLAKSYKTGRSILDNDILEVDQPRYLFLYC 179

Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
           YYGGMI +G K F KALELLHNVVTAPM S+NAIAVEAYKKYILVSLI++GQFS++LPKY
Sbjct: 180 YYGGMICVGLKLFHKALELLHNVVTAPMQSMNAIAVEAYKKYILVSLIYNGQFSTSLPKY 239

Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
           TSS AQRNLKNF QPY+EL N+Y+TG + EL+T  QTNR+KFESDNNLGLVKQ VSSMYK
Sbjct: 240 TSSVAQRNLKNFCQPYIELANSYSTGNVEELDTVFQTNRQKFESDNNLGLVKQAVSSMYK 299

Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           RNIQRLTQTYLTLSLQDIA+TV+LNS KEAEMHVLQM+
Sbjct: 300 RNIQRLTQTYLTLSLQDIASTVKLNSPKEAEMHVLQMI 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2145638	429	COP13 "AT5G14250" [Arabidopsis	0.974	0.787	0.636	2.6e-109
UNIPROTKB|Q9UNS2	423	COPS3 "COP9 signalosome comple	0.959	0.787	0.406	3.1e-60
MGI|MGI:1349409	423	Cops3 "COP9 (constitutive phot	0.959	0.787	0.406	3.9e-60
RGD|1303002	423	Cops3 "COP9 signalosome subuni	0.959	0.787	0.406	3.9e-60
ZFIN|ZDB-GENE-030131-7660	423	cops3 "COP9 constitutive photo	0.959	0.787	0.409	3.9e-60
UNIPROTKB|Q5ZJF1	423	COPS3 "COP9 signalosome comple	0.959	0.787	0.406	5e-60
UNIPROTKB|A6H7B5	423	COPS3 "COP9 signalosome comple	0.959	0.787	0.403	6.4e-60
UNIPROTKB|E2RD70	423	COPS3 "Uncharacterized protein	0.959	0.787	0.403	1.3e-59
UNIPROTKB|F1SB16	423	COPS3 "Uncharacterized protein	0.959	0.787	0.400	1.7e-59
DICTYBASE|DDB_G0291848	418	csn3 "proteasome component reg	0.893	0.741	0.386	2.7e-52

TAIR|locus:2145638 COP13 "AT5G14250" [Arabidopsis thaliana (taxid:3702)]

 Score = 1080 (385.2 bits), Expect = 2.6e-109, P = 2.6e-109
 Identities = 215/338 (63%), Positives = 261/338 (77%)

Query:     1 MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
             + S+E ++T IQGLS +  D++AL D L+ A+D LR+E     S LDQLD SKHSLGYLY
Sbjct:     5 VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64

Query:    61 FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
             FLE      ++KE+A   +PIIARFI SC A QIR    KF+++CK  KD V+ L  P+R
Sbjct:    65 FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLR 124

Query:   121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
             GVGP+L A++K+Q S++ LT LHP+ LQLCL AK YK+G S+L DDI EI+ PRDFFLY 
Sbjct:   125 GVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYS 184

Query:   181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
             YYGGMI IG KRF+KALELL+NVVTAPM  +NAIA+EAYKKYILVSLIH+GQF++TLPK 
Sbjct:   185 YYGGMICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFTNTLPKC 244

Query:   241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
              S+AAQR+ KN++ PY+EL N YN GKI ELE  V     +FE D NLGLVKQ VSS+YK
Sbjct:   245 ASTAAQRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYK 304

Query:   301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
             RNI RLTQ YLTLSLQDIAN VQL ++KEAEMHVLQM+
Sbjct:   305 RNILRLTQKYLTLSLQDIANMVQLGNAKEAEMHVLQMI 342

GO:0008180 "signalosome" evidence=TAS;IPI

GO:0009640 "photomorphogenesis" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010388 "cullin deneddylation" evidence=RCA;IMP

GO:0010971 "positive regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

UNIPROTKB|Q9UNS2 COPS3 "COP9 signalosome complex subunit 3" [Homo sapiens (taxid:9606)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 139/342 (40%), Positives = 201/342 (58%)

Query:     3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
             ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct:     4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query:    63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
                 +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct:    63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query:   123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
             G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct:   122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query:   177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
               Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct:   182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query:   237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
             LPKYTS    R +K  S  Y EL   Y+T    EL   V  + E F  DNN+GLVKQ +S
Sbjct:   241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300

Query:   297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
             S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct:   301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008180 "signalosome" evidence=IDA

GO:0010388 "cullin deneddylation" evidence=IDA

GO:0009416 "response to light stimulus" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1349409 Cops3 "COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)" [Mus musculus (taxid:10090)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 139/342 (40%), Positives = 201/342 (58%)

Query:     3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
             ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct:     4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query:    63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
                 +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct:    63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query:   123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
             G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct:   122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query:   177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
               Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct:   182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query:   237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
             LPKYTS    R +K  S  Y EL   Y+T    EL   V  + E F  DNN+GLVKQ +S
Sbjct:   241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVSKHSETFTRDNNMGLVKQCLS 300

Query:   297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
             S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct:   301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=ISO;IDA

GO:0010388 "cullin deneddylation" evidence=ISO

RGD|1303002 Cops3 "COP9 signalosome subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 139/342 (40%), Positives = 201/342 (58%)

Query:     3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
             ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct:     4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query:    63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
                 +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct:    63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query:   123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
             G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct:   122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query:   177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
               Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct:   182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query:   237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
             LPKYTS    R +K  S  Y EL   Y+T    EL   V  + E F  DNN+GLVKQ +S
Sbjct:   241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300

Query:   297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
             S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct:   301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008180 "signalosome" evidence=IEA;ISO

GO:0010388 "cullin deneddylation" evidence=IEA;ISO

ZFIN|ZDB-GENE-030131-7660 cops3 "COP9 constitutive photomorphogenic homolog subunit 3" [Danio rerio (taxid:7955)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 140/342 (40%), Positives = 198/342 (57%)

Query:     3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
             ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct:     4 ALEQFVNNVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDIQEHSLGVLAVL 62

Query:    63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
                 +         TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct:    63 F-VKFSMPNIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query:   123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
               +  AI K+Q +T  LT++H +  QLCLLAKC+K  +  LE D+ +I   N   D   F
Sbjct:   122 SILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKENGAYDAKHF 181

Query:   177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
               Y YYGGMI+ G K F +AL      +T P  +++ I +EAYKKYILVSLI HG+    
Sbjct:   182 LCYYYYGGMIYTGLKNFERALYFFEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240

Query:   237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
             LPKYTS    R +K  S  Y EL   Y T    EL   V  + E F  DNN GLVKQ +S
Sbjct:   241 LPKYTSQIVGRFIKPLSNAYHELAQIYATNNPAELRALVNKHSETFTRDNNTGLVKQCLS 300

Query:   297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
             S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct:   301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

UNIPROTKB|Q5ZJF1 COPS3 "COP9 signalosome complex subunit 3" [Gallus gallus (taxid:9031)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 139/342 (40%), Positives = 201/342 (58%)

Query:     3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
             ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct:     4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query:    63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
                 +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct:    63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query:   123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
               +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct:   122 SILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query:   177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
               Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct:   182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query:   237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
             LPKYTS    R +K  S  Y EL   Y+T K  EL   V  + E F  DNN+GLVKQ +S
Sbjct:   241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNKPSELRNLVNKHSETFTRDNNMGLVKQCLS 300

Query:   297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
             S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct:   301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0010388 "cullin deneddylation" evidence=IEA

UNIPROTKB|A6H7B5 COPS3 "COP9 signalosome complex subunit 3" [Bos taurus (taxid:9913)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 138/342 (40%), Positives = 202/342 (59%)

Query:     3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
             ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct:     4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query:    63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
                 +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct:    63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query:   123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
             G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct:   122 GVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDAKHF 181

Query:   177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
               Y YYGGM++ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct:   182 LCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query:   237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
             LPKYTS    R +K  S  Y EL   Y+T    EL + V  + E F  DNN+GLVKQ +S
Sbjct:   241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRSLVTKHSEIFTRDNNMGLVKQCLS 300

Query:   297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
             S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct:   301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

GO:0005737 "cytoplasm" evidence=IEA

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|E2RD70 COPS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 138/342 (40%), Positives = 200/342 (58%)

Query:     3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
             ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct:     4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query:    63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
                 +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct:    63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query:   123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
               +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I   N   D   F
Sbjct:   122 SILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181

Query:   177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
               Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct:   182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query:   237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
             LPKYTS    R +K  S  Y EL   Y+T    EL   V  + E F  DNN+GLVKQ +S
Sbjct:   241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300

Query:   297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
             S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct:   301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|F1SB16 COPS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 137/342 (40%), Positives = 199/342 (58%)

Query:     3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
             ++E  V  ++ LS+    +T L + +  + +LL    + L + L  LD  +HSLG L  L
Sbjct:     4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62

Query:    63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
                 +   +     TL      FI++C+ E IRY  + F  +C +  + ++  + P+RG+
Sbjct:    63 F-VKFSMPSAPDFETLFSQAQLFISACNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121

Query:   123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------RDF 176
             G +  AI K+Q S   LT++H +  QLCLLAKC+K  L  L+ D+ +I         R F
Sbjct:   122 GVLKQAIDKMQMSANQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDARHF 181

Query:   177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
               Y YYGGM++ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    
Sbjct:   182 LCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240

Query:   237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
             LPKYTS    R +K  S  Y EL   Y+T    EL T V  + E F  D+N+GLVKQ +S
Sbjct:   241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNSPSELRTLVNKHSETFVRDSNMGLVKQCLS 300

Query:   297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
             S+YK+NIQRLT+T+LTLSLQD+A+ VQL+  +EAE +VL M+
Sbjct:   301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMI 342

GO:0010388 "cullin deneddylation" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

DICTYBASE|DDB_G0291848 csn3 "proteasome component region PCI (PINT) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 125/323 (38%), Positives = 184/323 (56%)

Query:    24 LKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIA 83
             LK+ LK  E L R +   L + L  LD   HSLG L  L+        K R+   +    
Sbjct:    16 LKNLLKYEEQLER-QHVSLDNILGALDVRNHSLGQLLVLK-AKGSDQGKNRS-VFIDQCN 72

Query:    84 RFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSS--TEHLTT 141
              F  +C+ EQ+R  P +   + K Y + +  L+ PIRGV  +  A+  +  +  T  LT 
Sbjct:    73 NFFRNCNVEQVRLAPAQLSQLSKFYTEALYELKQPIRGVAVLKDALNILSDNKPTTTLTP 132

Query:   142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------RDFFLYCYYGGMIFIGQKRFRK 195
             +H +FLQLC+L+KCY   L ++E +I  IN        +D   Y YY G+IF   K+++K
Sbjct:   133 IHTDFLQLCILSKCYHQALPLIESNITHINPEQSSIAIKDILCYFYYSGIIFTAFKKYKK 192

Query:   196 ALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP 255
             A+E    V+TAP S+++AI VEAYKKY++V LI  G      PK T +  QRN+K+  +P
Sbjct:   193 AIEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQH-FPKCTPAVVQRNIKSHCKP 251

Query:   256 YMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSL 315
             Y E V +++ G I ++     +  E F+ D+N GLVK  + S Y+RNI++LTQT++TLS+
Sbjct:   252 YTEFVQSFSNGNINDIMNKASSGAEFFQKDSNWGLVKLSIKSTYRRNIKKLTQTFMTLSI 311

Query:   316 QDIANTVQLNSSKEAEMHVLQMV 338
              DIA  V L  +K AE  VL+M+
Sbjct:   312 NDIAEKVSLPKAK-AEQFVLKMI 333

GO:0008180 "signalosome" evidence=IEA;ISS;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
pfam01399	100	pfam01399, PCI, PCI domain	4e-10
smart00753	88	smart00753, PAM, PCI/PINT associated module	2e-04
smart00088	88	smart00088, PINT, motif in proteasome subunits, In	2e-04

>gnl|CDD|216479 pfam01399, PCI, PCI domain

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 19/83 (22%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 256 YMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSL 315
           Y +L+  + +G + + E  +  N ++   D    L++ +   + + N++RL + Y ++SL
Sbjct: 1   YRDLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKPYSSISL 60

Query: 316 QDIANTVQLNSSKEAEMHVLQMV 338
            D+A  + L S  E E  + +++
Sbjct: 61  SDLAKLLGL-SVDEVEKILSKLI 82

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100

>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 290 LVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           LV+++   +   N+ +L++ Y ++SL D+A  + L S  E E  V + +
Sbjct: 2   LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGL-SVPEVEKLVSKAI 49

Length = 88

>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 290 LVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           LV+++   +   N+ +L++ Y ++SL D+A  + L S  E E  V + +
Sbjct: 2   LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGL-SVPEVEKLVSKAI 49

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
KOG2582	422	consensus COP9 signalosome, subunit CSN3 [Posttran	100.0
KOG2581	493	consensus 26S proteasome regulatory complex, subun	100.0
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	99.63
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	99.34
KOG2688	394	consensus Transcription-associated recombination p	99.04
COG5600	413	Transcription-associated recombination protein [DN	98.98
KOG1463	411	consensus 26S proteasome regulatory complex, subun	98.7
KOG2908	380	consensus 26S proteasome regulatory complex, subun	98.3
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.29
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	98.12
smart00753	88	PAM PCI/PINT associated module.	98.12
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	97.66
KOG1498	439	consensus 26S proteasome regulatory complex, subun	97.57
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	97.46
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	96.88
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.51
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.42
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.1
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.98
TIGR02552	135	LcrH_SycD type III secretion low calcium response	95.97
PRK12370	553	invasion protein regulator; Provisional	95.96
PF13371	73	TPR_9: Tetratricopeptide repeat	95.65
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.64
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.64
COG5187	412	RPN7 26S proteasome regulatory complex component,	95.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	95.21
PRK15359	144	type III secretion system chaperone protein SscB;	95.09
PRK10803	263	tol-pal system protein YbgF; Provisional	94.76
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.55
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	94.11
KOG0687	393	consensus 26S proteasome regulatory complex, subun	94.03
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.03
COG5071	439	RPN5 26S proteasome regulatory complex component [	94.0
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.21
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	93.16
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.12
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	92.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	92.71
KOG2753	378	consensus Uncharacterized conserved protein, conta	92.55
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	92.53
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.39
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	91.84
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	91.56
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	91.49
PLN03218	1060	maturation of RBCL 1; Provisional	91.34
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	91.28
PRK10370	198	formate-dependent nitrite reductase complex subuni	91.28
PLN03218	1060	maturation of RBCL 1; Provisional	91.2
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	90.93
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	90.76
KOG2072	988	consensus Translation initiation factor 3, subunit	90.62
PRK11788	389	tetratricopeptide repeat protein; Provisional	90.24
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	89.81
KOG1076	843	consensus Translation initiation factor 3, subunit	89.48
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	89.47
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	89.38
TIGR02552	135	LcrH_SycD type III secretion low calcium response	89.27
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	89.22
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	89.05
PF12688	120	TPR_5: Tetratrico peptide repeat	88.81
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	88.77
PRK15359	144	type III secretion system chaperone protein SscB;	88.75
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	88.56
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	88.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	88.38
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	88.27
PLN03077	857	Protein ECB2; Provisional	88.17
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	87.74
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	87.31
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	87.25
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	86.99
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	86.75
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	86.74
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	86.51
PRK10803	263	tol-pal system protein YbgF; Provisional	86.47
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	86.44
PRK11189	296	lipoprotein NlpI; Provisional	86.42
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	85.32
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	85.27
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	84.95
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	84.83
PRK14574	822	hmsH outer membrane protein; Provisional	84.8
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	84.74
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	84.5
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	84.1
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	84.02
PF13428	44	TPR_14: Tetratricopeptide repeat	83.91
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	83.75
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	83.72
PRK11189	296	lipoprotein NlpI; Provisional	82.74
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	82.4
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	82.28
PF13512	142	TPR_18: Tetratricopeptide repeat	82.25
PLN03077	857	Protein ECB2; Provisional	82.17
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	81.82
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	81.65
PRK15331	165	chaperone protein SicA; Provisional	81.11
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	80.96
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	80.42
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	80.21

>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-72  Score=527.20  Aligned_cols=339  Identities=42%  Similarity=0.656  Sum_probs=329.9

Q ss_pred             HHHHHHHHhhcCCChhcHHHHHHHHHHhHHHHhhhhhhhhhhhhhcCchhhHHHHHHHHHHhhhcccchhhhhhHHHHHH
Q 019008            4 IENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIA   83 (347)
Q Consensus         4 l~~~~~~i~~~~~s~~~~~~L~~~L~~~~~~l~~~~~~~~~~L~~ldp~~~sl~~L~vL~~~~~~~~~~~~~~~~~~~~~   83 (347)
                      +++.+++++++++++ ++++|.+.+.++.+.|++++++++++|.+|||+.||+||+|++.+++..+....+++.+++++.
T Consensus         5 l~a~i~~~~~~~~~~-~~~eL~~~i~~~~ell~k~~~~~~~~L~~ld~~~hSlgml~~l~~~f~~~~~~~~~~~li~~~~   83 (422)
T KOG2582|consen    5 LEAAINELCSLSHSS-NVGELAELIVKSKELLAKNSSDLDAVLLHLDPQVHSLGMLAVLKVKFHTPSANPDPETLIELLN   83 (422)
T ss_pred             HHHHHHHHHhhhcCC-cHHHHHHHHHhhHHHHHhCcchHHHHHHhcCccccchhhhhhhhccccCcccCCCHHHHHHHHH
Confidence            789999999999999 9999999999999999999999999999999999999999999999987764457889999999


Q ss_pred             HHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhh
Q 019008           84 RFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVL  163 (347)
Q Consensus        84 ~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l  163 (347)
                      +|+.++|.+|+|+++..|..+|+.+++.+.+.++|.+|+.++.+|+.++.++..++|++|.+++++|+++|+|..++|++
T Consensus        84 ~FV~~~n~eqlr~as~~f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~l  163 (422)
T KOG2582|consen   84 DFVDENNGEQLRLASEIFFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYL  163 (422)
T ss_pred             HHHHhcChHHHhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCcc
Confidence            99999999999999999999999999999999999999999999999999999899999999999999999999999999


Q ss_pred             ccccccc------CCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 019008          164 EDDIYEI------NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTL  237 (347)
Q Consensus       164 ~~~i~~i------~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~l  237 (347)
                      |.+|.++      .+++.++.|+||||||++++|+|++|..||++|+++|+.++++|+.||||||+||+||+.||+. .+
T Consensus       164 d~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~-ql  242 (422)
T KOG2582|consen  164 DDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVF-QL  242 (422)
T ss_pred             chhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCcee-ec
Confidence            9999988      4589999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             CcccCHHHhhhhhhcchhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHH
Q 019008          238 PKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQD  317 (347)
Q Consensus       238 p~~~s~~~~r~~k~~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~d  317 (347)
                      |++|++.+.|.+|...-||.+|+++|.++...+++.++.+|++.|.+|||+|||++++.+++|++|+||+|+|++|||+|
T Consensus       243 ~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~d  322 (422)
T KOG2582|consen  243 PKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSD  322 (422)
T ss_pred             cccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCChhhHHHHHHHHhhccccc
Q 019008          318 IANTVQLNSSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       318 Ia~~l~l~s~~eaE~~v~~mI~~G~~~  344 (347)
                      ||++++|.+++|||..|.+||+||++.
T Consensus       323 IA~~vQLa~~qevek~Ilqmie~~~i~  349 (422)
T KOG2582|consen  323 IASRVQLASAQEVEKYILQMIEDGEIF  349 (422)
T ss_pred             HHHHHHhcchHHHHHHHHHHhccCceE
Confidence            999999999999999999999999864

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-46  Score=356.11  Aligned_cols=327  Identities=20%  Similarity=0.258  Sum_probs=256.5

Q ss_pred             HHHHHHhhcCCCh-hcHHHHHHHHHHhHH---HHhhhhhhhhhhh--hhcCchhhHHHHHHHHHHhhhcccchhhhhhHH
Q 019008            6 NLVTQIQGLSSNA-SDITALKDYLKAAED---LLRSESTRLLSFL--DQLDPSKHSLGYLYFLEPCMYCSITKERANTLV   79 (347)
Q Consensus         6 ~~~~~i~~~~~s~-~~~~~L~~~L~~~~~---~l~~~~~~~~~~L--~~ldp~~~sl~~L~vL~~~~~~~~~~~~~~~~~   79 (347)
                      .+++-++.+.+++ +....+..++...++   .+...+....+.+  ..+-|+...+.||.++..+++++..+ ++..+.
T Consensus        71 vL~~~v~~~~~~~se~~~~~l~fv~~~~~~~~p~~~~s~~t~~a~~~k~~~~Ei~aY~~lLv~Lfl~d~K~~k-ea~~~~  149 (493)
T KOG2581|consen   71 VLYKLVSSLLSSGSEAMDRLLRFVPAFDKNIKPLDTDSPNTQSALKRKPLPAEIEAYLYLLVLLFLIDQKEYK-EADKIS  149 (493)
T ss_pred             HHHHHHHHHcCCchHHHHHHHhhcccccccCCcccccccccccccccCCchHHHHHHHHHHHHHHHHhhHHHH-HHHHHH
Confidence            3556666666666 344444444433221   1111112222222  23455677777777777777666543 667777


Q ss_pred             HHHHHHHhcCChhhhhchhHHHHHHHHHHHHh---HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCc
Q 019008           80 PIIARFITSCSAEQIRYVPEKFINVCKRYKDQ---VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCY  156 (347)
Q Consensus        80 ~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~---~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y  156 (347)
                      +....=+..+|+|.+++++.+.+++.....+.   +...+.-  -...|++|.+|+|..++  ..+.++|+|+++..+.|
T Consensus       150 ~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~--l~~~lrtAtLrhd~e~q--avLiN~LLr~yL~n~ly  225 (493)
T KOG2581|consen  150 DALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSF--LHALLRTATLRHDEEGQ--AVLINLLLRNYLHNKLY  225 (493)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHH--HHHHHHHhhhcCcchhH--HHHHHHHHHHHhhhHHH
Confidence            77777799999999998887633333222222   2222211  24579999999998765  77889999999999999


Q ss_pred             hhhhhhhcccccccC-CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCC
Q 019008          157 KAGLSVLEDDIYEIN-LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFS  234 (347)
Q Consensus       157 ~~Al~~l~~~i~~i~-~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~  234 (347)
                      ++|..++.|..++-. ++++++||+||.|+|.+.+++|+.|.++|.+|++ +|+.++-||...+.|..++|+|+ .|++|
T Consensus       226 dqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll-~geiP  304 (493)
T KOG2581|consen  226 DQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELL-LGEIP  304 (493)
T ss_pred             HHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHH-cCCCc
Confidence            999999999887654 4789999999999999999999999999999998 99988889988887766777755 69999


Q ss_pred             CCCCcccCHHHhhhhhhcchhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhccc
Q 019008          235 STLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLS  314 (347)
Q Consensus       235 ~~lp~~~s~~~~r~~k~~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~Is  314 (347)
                       ++.-|+.    ..+++.+.||+.|++|++.||++.|..+++++.+.|+.|||+.|+.|+++|++|++||+|+.+|||||
T Consensus       305 -ers~F~Q----p~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NVIkTgIR~ISlsYSRIS  379 (493)
T KOG2581|consen  305 -ERSVFRQ----PGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNVIKTGIRKISLSYSRIS  379 (493)
T ss_pred             -chhhhcC----ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhheeeeeeecc
Confidence             8655554    44555678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          315 LQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       315 L~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      +.|||++++++|+++||++|+++|+||+.
T Consensus       380 l~DIA~kL~l~Seed~EyiVakAIRDGvI  408 (493)
T KOG2581|consen  380 LQDIAKKLGLNSEEDAEYIVAKAIRDGVI  408 (493)
T ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHhccc
Confidence            99999999999999999999999999975

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.63  E-value=2.8e-14  Score=132.34  Aligned_cols=215  Identities=14%  Similarity=0.193  Sum_probs=184.2

Q ss_pred             chHHHHHHHHhhCCC-----CCchhhHHHHHHHHHHhcCCchhhhhhhccccc---ccCCchhhHHHHHHHHHHHHhhhc
Q 019008          121 GVGPMLTAIRKIQSS-----TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       121 ~i~~L~~Ai~r~~~~-----~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~---~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      -+.-|+..|+.-|.+     |.+|-.+.++-++.|...++.+.-..+.++.+.   .||.|.-+.-.--+||.+++..++
T Consensus       167 IlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~  246 (440)
T KOG1464|consen  167 ILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGE  246 (440)
T ss_pred             HHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccch
Confidence            345677777776643     678888999999999999997776666666543   456688888889999999999999


Q ss_pred             HHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcc--hhHHHHHHHHhcCChHH
Q 019008          193 FRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFS--QPYMELVNTYNTGKIVE  270 (347)
Q Consensus       193 y~~A~~~l~~ai~~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~--~pY~~la~a~~~g~~~~  270 (347)
                      |++|..-|.-|..--..+.|+....|.|.+||..+|....+. |++.    ..++.||+..  ....++++||..+|+.+
T Consensus       247 fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-PFDs----QEAKPyKNdPEIlAMTnlv~aYQ~NdI~e  321 (440)
T KOG1464|consen  247 FEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-PFDS----QEAKPYKNDPEILAMTNLVAAYQNNDIIE  321 (440)
T ss_pred             HHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-CCcc----cccCCCCCCHHHHHHHHHHHHHhcccHHH
Confidence            999995555566544457899999999999999999999999 8865    5667788755  47889999999999999


Q ss_pred             HHHHHHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcc
Q 019008          271 LETYVQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFE  341 (347)
Q Consensus       271 ~~~~~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G  341 (347)
                      |++++..+++....|... .-+..++.+++-..+.+|.+.|..|.++-|++.++++ +.|+|.++.++|-|.
T Consensus       322 FE~Il~~~~~~IM~DpFIReh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~-~~dV~~LLV~~ILD~  392 (440)
T KOG1464|consen  322 FERILKSNRSNIMDDPFIREHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELNVP-EADVESLLVSCILDD  392 (440)
T ss_pred             HHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHhhcCCC-HHHHHHHHHHHHhcc
Confidence            999999999999999986 7889999999999999999999999999999999998 899999999999874

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=99.34  E-value=4.1e-12  Score=101.99  Aligned_cols=90  Identities=23%  Similarity=0.502  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHhcCChHHHHHHHHhc-cccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHH
Q 019008          254 QPYMELVNTYNTGKIVELETYVQTN-REKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEM  332 (347)
Q Consensus       254 ~pY~~la~a~~~g~~~~~~~~~~~~-~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~  332 (347)
                      .||.+|.++|.+||...|.+.++++ ...|.++++..++.++...++++.++++.+.|++||+++||+.++++ .+++|.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~-~~~vE~   79 (105)
T PF01399_consen    1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLS-EEEVES   79 (105)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCC-HHHHHH
T ss_pred             CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccc-hHHHHH
Confidence            3899999999999999999999999 88888888899999999999999999999999999999999999999 699999


Q ss_pred             HHHHHhhccccc
Q 019008          333 HVLQMVTFEVNL  344 (347)
Q Consensus       333 ~v~~mI~~G~~~  344 (347)
                      +|.+||.+|.+-
T Consensus        80 ~l~~~I~~~~i~   91 (105)
T PF01399_consen   80 ILIDLISNGLIK   91 (105)
T ss_dssp             HHHHHHHTTSSE
T ss_pred             HHHHHHHCCCEE
Confidence            999999999863

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=1.4e-09  Score=106.50  Aligned_cols=194  Identities=14%  Similarity=0.164  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccC-----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHH
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEIN-----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIA  215 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~-----~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~  215 (347)
                      +-+.|.+.+.+-+++.-+.+++....-.++     +-.++..|+||.|+..+-..+|..|...|..|.+ +|...... +
T Consensus       165 i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af~~cp~~~~~n-~  243 (394)
T KOG2688|consen  165 IVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAFRLCPDLLLKN-K  243 (394)
T ss_pred             HHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHHHhCcHHHHhh-h
Confidence            347789999999999999988876443322     2568899999999999999999999999999997 99743331 1


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcchhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHH
Q 019008          216 VEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVV  295 (347)
Q Consensus       216 vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~  295 (347)
                      .-..+.||=+.++ .|++|      +.+.+.+. .  +.-|..++++++.||+..|+..+++++..|.+=|-+..+..+.
T Consensus       244 ~~iliylip~~~l-lg~~P------t~~lL~~~-~--~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l~~l~  313 (394)
T KOG2688|consen  244 RLILIYLIPTGLL-LGRIP------TKELLDFY-T--LDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYLTLEKLP  313 (394)
T ss_pred             hhHHHHHhHHHHH-hccCc------chhhHhHh-h--HHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHHHhhhhh
Confidence            1123445555544 58888      44555543 2  6789999999999999999999999999999999999998899


Q ss_pred             HHHHHHHHHHHHhhh---hcccHHHHHHHcCCCC-----hhhHHHHHHHHhhccccccc
Q 019008          296 SSMYKRNIQRLTQTY---LTLSLQDIANTVQLNS-----SKEAEMHVLQMVTFEVNLLY  346 (347)
Q Consensus       296 ~~~~r~~I~~L~~~Y---s~IsL~dIa~~l~l~s-----~~eaE~~v~~mI~~G~~~~~  346 (347)
                      --+.|+-++|.-+.-   +++|++.+...++..+     .+|+|.+++.+|.+|-+--|
T Consensus       314 lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgY  372 (394)
T KOG2688|consen  314 LVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGY  372 (394)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccch
Confidence            999999999999888   9999999999987765     89999999999999976433

>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]

Probab=98.98  E-value=8.2e-09  Score=99.57  Aligned_cols=194  Identities=19%  Similarity=0.275  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhccc-ccccC-----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc-chhH
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDD-IYEIN-----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS-SINA  213 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~-i~~i~-----~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~-~~s~  213 (347)
                      +-++++++|++=++.+-+..++..- +...+     +-.++..|+||.|++|+-+.++.+|...|..|.. +|-- .-..
T Consensus       179 iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~  258 (413)
T COG5600         179 IANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNR  258 (413)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcch
Confidence            4478999999999999998777542 11111     2468899999999999999999999988888885 8861 1111


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcchhHHHHHHHHhcCChHHHHHHHHhccccccccccc-cHHH
Q 019008          214 IAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNL-GLVK  292 (347)
Q Consensus       214 i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~-gLV~  292 (347)
                        ---.-.||-.+||.+|..|      +-+...| ++. +..|.-|+.++++||++.|...+++++..|.+-|-+ .|..
T Consensus       259 --~rIl~~~ipt~Llv~~~~P------tk~~L~r-~~~-~s~~~~LvkavrsGni~~~~~~l~~ner~~~~~~l~ltl~~  328 (413)
T COG5600         259 --KRILPYYIPTSLLVNKFPP------TKDLLER-FKR-CSVYSPLVKAVRSGNIEDFDLALSRNERKFAKRGLYLTLLA  328 (413)
T ss_pred             --heehhHHhhHHHHhCCCCC------chHHHHh-ccc-cchhHHHHHHHHcCCHHHHHHHHHHhHHHHHHcchHHHHHh
Confidence              1112368888999877776      3334444 555 889999999999999999999999999777776665 4444


Q ss_pred             H----HHHHHHHHHHHHHHhhhhccc--HHHHHHHcCCCC----hhhHHHHHHHHhhccccccc
Q 019008          293 Q----VVSSMYKRNIQRLTQTYLTLS--LQDIANTVQLNS----SKEAEMHVLQMVTFEVNLLY  346 (347)
Q Consensus       293 ~----~~~~~~r~~I~~L~~~Ys~Is--L~dIa~~l~l~s----~~eaE~~v~~mI~~G~~~~~  346 (347)
                      .    +..++.| .+..+..-=+++|  +-.++.++...+    .+++|.+++.||..|-+--|
T Consensus       329 ~~~~V~~RNL~r-k~w~~~~~qsrlp~sil~~~~qls~~dn~~~~~~VEciL~tlI~~G~lrgY  391 (413)
T COG5600         329 HYPLVCFRNLFR-KIWRLHGKQSRLPLSILLIVLQLSAIDNFHSFKEVECILVTLIGLGLLRGY  391 (413)
T ss_pred             hccHHHHHHHHH-HHHhhccccccCcHHHHHHHHHccCCCcccChHHHHHHHHHHHhhhhhhhe
Confidence            3    3445555 3444444446644  445555554443    78999999999999977543

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=4.6e-06  Score=80.02  Aligned_cols=215  Identities=13%  Similarity=0.195  Sum_probs=151.0

Q ss_pred             chHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcc------cccccCCchhhHHHHHHHHHHHHhhhcHH
Q 019008          121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLED------DIYEINLPRDFFLYCYYGGMIFIGQKRFR  194 (347)
Q Consensus       121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~------~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~  194 (347)
                      -+.+|..-+.|+|.- ..|..+|.+--+.+..-++...|..-|-.      .|+  .+|+....-..-.|++++..++|.
T Consensus       150 L~~~L~rElKKlDDK-~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY--cpPqlQa~lDLqSGIlha~ekDyk  226 (411)
T KOG1463|consen  150 LINDLLRELKKLDDK-ILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY--CPPQLQATLDLQSGILHAAEKDYK  226 (411)
T ss_pred             HHHHHHHHHHhcccc-cceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc--cCHHHHHHHHHhccceeecccccc
Confidence            345566666777753 45677777777777777776666544432      222  236677888889999999999999


Q ss_pred             HHHHHHHHhhcCCccchh-HHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh-cchhHHHHHHHHhcCChHHHH
Q 019008          195 KALELLHNVVTAPMSSIN-AIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN-FSQPYMELVNTYNTGKIVELE  272 (347)
Q Consensus       195 ~A~~~l~~ai~~P~~~~s-~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~-~~~pY~~la~a~~~g~~~~~~  272 (347)
                      -|+.+|--|.---.+.-. .-+..+.|..+|...+++ ... ..-...+.-....|.. .......+++||.+.+++.|+
T Consensus       227 TafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln-~~d-dv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~  304 (411)
T KOG1463|consen  227 TAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLN-LPD-DVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFE  304 (411)
T ss_pred             hHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhc-CHH-HHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHH
Confidence            999888888852221111 234556888888776653 322 2211111111111332 335778899999999999999


Q ss_pred             HHHHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcc
Q 019008          273 TYVQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFE  341 (347)
Q Consensus       273 ~~~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G  341 (347)
                      ..+..|......|.-. .=..-+-.++--.+|-|+..+||++-++.||+-+|++ ...+|.=+.+||-|.
T Consensus       305 ~AL~~yk~eL~~D~ivr~Hl~~Lyd~lLEknl~riIEPyS~Vei~hIA~~IGl~-~~~VEkKLsqMILDK  373 (411)
T KOG1463|consen  305 KALADYKKELAEDPIVRSHLQSLYDNLLEKNLCRIIEPYSRVEISHIAEVIGLD-VPQVEKKLSQMILDK  373 (411)
T ss_pred             HHHHHhHHHHhcChHHHHHHHHHHHHHHHHhHHHHcCchhhhhHHHHHHHHCCC-cHHHHHHHHHHHHHH
Confidence            9999999999999653 3333445556667999999999999999999999999 789999999999763

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=0.00013  Score=70.23  Aligned_cols=246  Identities=14%  Similarity=0.173  Sum_probs=156.4

Q ss_pred             hhhHHHHHHHHHhcCC----hhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCC--chhhHHHHHHH
Q 019008           75 ANTLVPIIARFITSCS----AEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQ  148 (347)
Q Consensus        75 ~~~~~~~~~~fl~~~~----~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~  148 (347)
                      ++.+.+...+|+..|-    |.++-          +-+.....+.+.+.++++.|..-+.+++....  .+--+|....+
T Consensus        54 ~~~~l~lY~NFvsefe~kINplslv----------ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r  123 (380)
T KOG2908|consen   54 GDLLLQLYLNFVSEFETKINPLSLV----------EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIAR  123 (380)
T ss_pred             chHHHHHHHHHHHHHhhccChHHHH----------HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            3455667777776654    33332          22222222444566678888888777776544  66678889999


Q ss_pred             HHHhcCCchhhhhhhcccccccC-----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCC-cc--chhHHHHHHHH
Q 019008          149 LCLLAKCYKAGLSVLEDDIYEIN-----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP-MS--SINAIAVEAYK  220 (347)
Q Consensus       149 l~l~~~~y~~Al~~l~~~i~~i~-----~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P-~~--~~s~i~vea~K  220 (347)
                      +.|..+.-+.+.+.++..--.++     +++-...||-.+..-|=.-++++.++...-.-+.+- .+  +.|.-+..|+ 
T Consensus       124 ~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~-  202 (380)
T KOG2908|consen  124 LKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLAF-  202 (380)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHHH-
Confidence            99999999999999986432222     155778888888888888899888876544444433 22  3444444443 


Q ss_pred             HHHHHHHHhcCC-CCCCCCcccCHHHhhhhhh-cchhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHH
Q 019008          221 KYILVSLIHHGQ-FSSTLPKYTSSAAQRNLKN-FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSM  298 (347)
Q Consensus       221 k~iLv~LL~~G~-i~~~lp~~~s~~~~r~~k~-~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~  298 (347)
                      -+.+..||  |+ +. .+-...+...-+.+++ .-.--.++..||..||+..|+.....+.+  ..    -|+.+  ...
T Consensus       203 ~L~~aALL--Ge~iy-NfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~--~p----~L~~~--e~~  271 (380)
T KOG2908|consen  203 DLSLAALL--GENIY-NFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGK--QP----DLASN--EDF  271 (380)
T ss_pred             HHHHHHHh--ccccc-cHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhcc--Cc----hHHHH--HHH
Confidence            34444544  44 44 3322222222233333 22567789999999999999998877666  11    13332  223


Q ss_pred             HHHHHHHH---Hhhhhc------ccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          299 YKRNIQRL---TQTYLT------LSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       299 ~r~~I~~L---~~~Ys~------IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      -+..|+-+   ..+|++      ||+++||++++++ .+|||.+|++++.-|-+
T Consensus       272 L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip-~~eVE~LVMKAlslgLi  324 (380)
T KOG2908|consen  272 LLQKIRLLALIEITFSRPANERTLSFKEIAEATKIP-NKEVELLVMKALSLGLI  324 (380)
T ss_pred             HHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCC-HHHHHHHHHHHHhccce
Confidence            33333333   346766      9999999999999 79999999999987654

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=8.1e-05  Score=70.34  Aligned_cols=218  Identities=10%  Similarity=0.229  Sum_probs=154.8

Q ss_pred             cccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhh------hhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          118 PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGL------SVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       118 ~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al------~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      ++.-|.||..-+.|+|.-.+ |+.+|.+--+.+.+-++...+.      +.+...++.  +|.-..+-....|+..+--+
T Consensus       144 alalIn~ll~ElKk~DDK~~-Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~  220 (421)
T COG5159         144 ALALINPLLHELKKYDDKIN-LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDR  220 (421)
T ss_pred             HHHHHHHHHHHHHhhcCccc-eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccc
Confidence            34457788888999997554 7788988777777766665544      333344432  35566778889999999999


Q ss_pred             cHHHHHHHHHHhhcCCcc-chhHHHHHHHHHHHHHHHHhcCCCCCCCC-cccCHHHhhhhhh-cchhHHHHHHHHhcCCh
Q 019008          192 RFRKALELLHNVVTAPMS-SINAIAVEAYKKYILVSLIHHGQFSSTLP-KYTSSAAQRNLKN-FSQPYMELVNTYNTGKI  268 (347)
Q Consensus       192 ~y~~A~~~l~~ai~~P~~-~~s~i~vea~Kk~iLv~LL~~G~i~~~lp-~~~s~~~~r~~k~-~~~pY~~la~a~~~g~~  268 (347)
                      +|.-|..+|--+.---+. ....-+....|..+|-.++++ .+. ... -.+.....+.|.. .......+++||.+.++
T Consensus       221 dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN-~~~-evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL  298 (421)
T COG5159         221 DYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLN-RRE-EVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSL  298 (421)
T ss_pred             cchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHh-hHH-HHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcH
Confidence            999999988888852221 112222334555555554443 222 110 0012222333432 33578899999999999


Q ss_pred             HHHHHHHHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcc
Q 019008          269 VELETYVQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFE  341 (347)
Q Consensus       269 ~~~~~~~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G  341 (347)
                      ..|...+.++......|... .=..-+...+--.++.|+..+|+++-++.||+-+|++ ...+|.=+.+||-|.
T Consensus       299 ~df~~aL~qY~~el~~D~~iRsHl~~LYD~LLe~Nl~kiiEPfs~VeishIa~viGld-t~qvEgKLsqMILDK  371 (421)
T COG5159         299 KDFSDALAQYSDELHQDSFIRSHLQYLYDVLLEKNLVKIIEPFSVVEISHIADVIGLD-TNQVEGKLSQMILDK  371 (421)
T ss_pred             hhHHHHHHHhhHHhccCHHHHHHHHHHHHHHHHhhhhhhcCcceeeehhHHHHHhccc-HHHHHHHHHHHHHHH
Confidence            99999999999999999765 4555667777888999999999999999999999999 788999999998763

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=98.12  E-value=7e-06  Score=64.13  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          290 LVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       290 LV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      ++.++.+.++++.+..+.++|++|++++|++.++++ .+++|..|.+||.+|.+
T Consensus         2 ~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~-~~~vE~~i~~~i~~~~l   54 (88)
T smart00088        2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS-VPEVEKLVSKAIRDGEI   54 (88)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCe
Confidence            577899999999999999999999999999999999 56899999999999975

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>smart00753 PAM PCI/PINT associated module

Probab=98.12  E-value=7e-06  Score=64.13  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          290 LVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       290 LV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      ++.++.+.++++.+..+.++|++|++++|++.++++ .+++|..|.+||.+|.+
T Consensus         2 ~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~-~~~vE~~i~~~i~~~~l   54 (88)
T smart00753        2 LVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS-VPEVEKLVSKAIRDGEI   54 (88)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCe
Confidence            577899999999999999999999999999999999 56899999999999975

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=97.66  E-value=0.0024  Score=63.70  Aligned_cols=183  Identities=19%  Similarity=0.269  Sum_probs=120.4

Q ss_pred             HHHHHHHhcCCchhhhhhhcccccccC-----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCCccc---------
Q 019008          145 EFLQLCLLAKCYKAGLSVLEDDIYEIN-----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSS---------  210 (347)
Q Consensus       145 ~ll~l~l~~~~y~~Al~~l~~~i~~i~-----~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P~~~---------  210 (347)
                      -|+|+-..-+.|..|+++++.--..-.     .+......+||.|-.|+.+++|.+|...|..++..=..+         
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~  206 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSY  206 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence            478999999999999999986321111     167788999999999999999999999999988522211         


Q ss_pred             -hhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcchhHHHHHHHHhcCChHHHHHHHHhccccccccc---
Q 019008          211 -INAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDN---  286 (347)
Q Consensus       211 -~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~---  286 (347)
                       -..|.-..=|.+.|+-+-+ ---|..+|..    +...+|.   -|.+=-....+||.+.|++.....-..|..=.   
T Consensus       207 q~d~i~K~~eqMyaLlAic~-~l~p~~lde~----i~~~lke---ky~ek~~kmq~gd~~~f~elF~~acPKFIsp~~pp  278 (404)
T PF10255_consen  207 QYDQINKKNEQMYALLAICL-SLCPQRLDES----ISSQLKE---KYGEKMEKMQRGDEEAFEELFSFACPKFISPVSPP  278 (404)
T ss_pred             hhhHHHhHHHHHHHHHHHHH-HhCCCCCCHH----HHHHHHH---HHHHHHHHHHccCHHHHHHHHHhhCCCccCCCCCC
Confidence             1233333334444433221 1113124443    3333333   36666666788999999999998777776521   


Q ss_pred             -------cc---c-------HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHH
Q 019008          287 -------NL---G-------LVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQ  336 (347)
Q Consensus       287 -------n~---g-------LV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~  336 (347)
                             |.   .       ...++.+...-..||..-|-|++|+++-+|.-++++ +++....+.-
T Consensus       279 ~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKLYtti~l~KLA~fl~vd-~~~lr~~Ll~  344 (404)
T PF10255_consen  279 DYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLKLYTTIPLEKLASFLDVD-EEELRSQLLC  344 (404)
T ss_pred             CcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCHHHHHHHcCCC-HHHHHHHHHH
Confidence                   11   1       122333333444899999999999999999999986 5655554443

>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.0012  Score=64.72  Aligned_cols=193  Identities=16%  Similarity=0.195  Sum_probs=135.6

Q ss_pred             HHHHHHHHhcCCchhhhhhhccccc--ccC-CchhhHHHHHHHHHHHH--hhhcHHHHHHHHHHhhcCCccchhHHHHHH
Q 019008          144 PEFLQLCLLAKCYKAGLSVLEDDIY--EIN-LPRDFFLYCYYGGMIFI--GQKRFRKALELLHNVVTAPMSSINAIAVEA  218 (347)
Q Consensus       144 ~~ll~l~l~~~~y~~Al~~l~~~i~--~i~-~~~~~l~Y~yy~G~i~~--~~k~y~~A~~~l~~ai~~P~~~~s~i~vea  218 (347)
                      ..=+|+|+..+.|-.|- ++.+.|.  .++ +..+.+---||--||..  ..+.|=.+-..+.-...+|......    +
T Consensus       175 LEQmrKOG~~~D~vra~-i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~----~  249 (439)
T KOG1498|consen  175 LEQMRLCLLRLDYVRAQ-IISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDP----E  249 (439)
T ss_pred             HHHHHHHHHhhhHHHHH-HHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccCh----h
Confidence            44579999999999984 4444332  122 23344555555556666  4677888888887777777643321    0


Q ss_pred             HHHHHHHHHHhcCCCCCCCCcccCHHHhhhh--hh--cchhHHHHHHHHhcCChHHHHHHHHhccccccccccc------
Q 019008          219 YKKYILVSLIHHGQFSSTLPKYTSSAAQRNL--KN--FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNL------  288 (347)
Q Consensus       219 ~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~--k~--~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~------  288 (347)
                      -=+.+|.+....-... |...--+..+.+.-  |.  -...|.++...|-++.+..|..+.+.+...+.+++++      
T Consensus       250 kw~~vL~~iv~f~~LA-p~dneQsdll~~is~dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg~~l~~~~~~~~~~~g  328 (439)
T KOG1498|consen  250 KWIEVLRSIVSFCVLA-PHDNEQSDLLARISNDKKLSELPDYKELLKLFVTMELIRWVSLVESYGDELRTNDFFDGGEEG  328 (439)
T ss_pred             hhhhhhhhheeEEeec-CCCcHHHHHHHHHhcccccccCccHHHHHHHHHhcceeeehhHhhhhHHHHhhcccccccchh
Confidence            0122344443333334 44443344444321  11  1247999999999999999998888888888887332      


Q ss_pred             -cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          289 -GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       289 -gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                       +-..++..+++.++||-+++-|++|++..++..++++ ++++|.++..|+..|-.
T Consensus       329 ek~~~dL~~RIiEHNiRiiA~yYSrIt~~rl~eLLdl~-~ee~E~~LS~lv~t~ti  383 (439)
T KOG1498|consen  329 EKRWSDLKLRIIEHNIRIIAKYYSRITLKRLAELLDLP-VEEMEKFLSDLVVTGTI  383 (439)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhCCC-HHHHHHHHHHHHhccce
Confidence             5678899999999999999999999999999999999 89999999999998864

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.46  E-value=0.069  Score=51.52  Aligned_cols=191  Identities=16%  Similarity=0.167  Sum_probs=138.2

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhccccccc-CCchh--hHHHHHHHHHHHHhhhcHHHHH-HHHHHhhcCCccchhHHH
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI-NLPRD--FFLYCYYGGMIFIGQKRFRKAL-ELLHNVVTAPMSSINAIA  215 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i-~~~~~--~l~Y~yy~G~i~~~~k~y~~A~-~~l~~ai~~P~~~~s~i~  215 (347)
                      -.+---+.|+||..+.-..|..+++++-+.. ..+++  .+.|--+-+++.=..++|=+|. .+++..-+--  .--...
T Consensus       144 l~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki--~~e~~~  221 (399)
T KOG1497|consen  144 LLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKI--VDESER  221 (399)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cchHHH
Confidence            3444557789999999999999999864433 22333  3567667777777777777765 4444333311  334678


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh----cchhHHHHHHHH-----hcCChHHHHHHHHhccccccccc
Q 019008          216 VEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN----FSQPYMELVNTY-----NTGKIVELETYVQTNREKFESDN  286 (347)
Q Consensus       216 vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~----~~~pY~~la~a~-----~~g~~~~~~~~~~~~~~~f~~D~  286 (347)
                      .+|.||-+-+.+|. +    |=|- ++.+.+-.||.    .+..|.-+..-|     ++.+.++|...+.-|+..=..||
T Consensus       222 ~~aL~~a~~CtlLA-~----~gpq-rsr~Latlfkder~~~l~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~dg  295 (399)
T KOG1497|consen  222 LEALKKALQCTLLA-S----AGPQ-RSRMLATLFKDERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMDG  295 (399)
T ss_pred             HHHHHHhHhheeec-C----CChH-HHHHHHHHhcCcccccccchHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccCc
Confidence            89999988777664 2    2222 56677777764    234555555444     66789999999999998887887


Q ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          287 NLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       287 n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      -.-|    -..++.++|.-+++-|.-||.+.+++-++++ ++.||.++++||-.|.+
T Consensus       296 ssil----~ra~~EhNlls~Skly~nisf~~Lg~ll~i~-~ekaekiaa~MI~qeRm  347 (399)
T KOG1497|consen  296 SSIL----DRAVIEHNLLSASKLYNNISFEELGALLKID-AEKAEKIAAQMITQERM  347 (399)
T ss_pred             chhh----hhHHHHHhHHHHHHHHHhccHHHHHHHhCCC-HHHHHHHHHHHHhHHHh
Confidence            6533    3678889999999999999999999999999 89999999999987754

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=96.88  E-value=0.0024  Score=54.54  Aligned_cols=79  Identities=16%  Similarity=0.244  Sum_probs=59.2

Q ss_pred             hHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHH
Q 019008          255 PYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHV  334 (347)
Q Consensus       255 pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v  334 (347)
                      .=..+.++..+|+..+|-+.++.+  .|. |.-..+|..+..+++.+...-++++|++||++++++.+|++ ++|++.++
T Consensus        43 ~i~~l~~~L~~~~~~~~~~~~~~~--~~~-~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~-~~el~~~~  118 (143)
T PF10075_consen   43 AIWSLGQALWEGDYSKFWQALRSN--PWS-PDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLS-EEELEKFI  118 (143)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHS-TT-------HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS--HHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc--cch-HHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCC-HHHHHHHH
Confidence            344788888999988888766643  342 34457788889999999999999999999999999999999 89999888


Q ss_pred             HHH
Q 019008          335 LQM  337 (347)
Q Consensus       335 ~~m  337 (347)
                      .+-
T Consensus       119 ~~~  121 (143)
T PF10075_consen  119 KSR  121 (143)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            765

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.51  E-value=0.025  Score=44.97  Aligned_cols=104  Identities=15%  Similarity=-0.001  Sum_probs=76.6

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..+..++.....++ .....+-.+.+.+...+.|+.|...+++-+...|........++..|.++..++++
T Consensus        14 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~   92 (119)
T TIGR02795        14 KAGDYADAIQAFQAFLKKYPKST-YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDK   92 (119)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcc-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCCh
Confidence            34555667888888887654322 23446677889999999999999999986654443344566788999999999999


Q ss_pred             HHHHHHHHHhhc-CCccchhHHHHHHHHH
Q 019008          194 RKALELLHNVVT-APMSSINAIAVEAYKK  221 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~~~s~i~vea~Kk  221 (347)
                      ++|..+|+.++. .|.+   ....+|.++
T Consensus        93 ~~A~~~~~~~~~~~p~~---~~~~~~~~~  118 (119)
T TIGR02795        93 EKAKATLQQVIKRYPGS---SAAKLAQKR  118 (119)
T ss_pred             HHHHHHHHHHHHHCcCC---hhHHHHHhc
Confidence            999999999997 7764   334555443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.42  E-value=0.017  Score=49.10  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=77.6

Q ss_pred             HHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhh
Q 019008           80 PIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAG  159 (347)
Q Consensus        80 ~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~A  159 (347)
                      ..+..|...+....  |+......+++.    ....+..-.++..|+.++..- +++..-...+..+.++++..+.|+.|
T Consensus        32 ~~~~~l~~~~~~s~--ya~~A~l~lA~~----~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~A  104 (145)
T PF09976_consen   32 AAAEQLAKDYPSSP--YAALAALQLAKA----AYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEA  104 (145)
T ss_pred             HHHHHHHHHCCCCh--HHHHHHHHHHHH----HHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            34555555544432  333333333333    334566667888888888865 44432233455688999999999999


Q ss_pred             hhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhh
Q 019008          160 LSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVV  204 (347)
Q Consensus       160 l~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai  204 (347)
                      +..|+..    +.+..-..+....|.|+...++|++|...|+.|+
T Consensus       105 l~~L~~~----~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  105 LATLQQI----PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHhc----cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9999762    2233345688899999999999999999999875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.10  E-value=0.014  Score=42.18  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=50.6

Q ss_pred             HHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          146 FLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       146 ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      +.+.++..+.|+.|.+.++.-+-.-|   +....+|..|.++..+++|++|..+|+.++. .|.+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDP---DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            45678899999999999998665433   4788999999999999999999999999996 7753

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.98  E-value=0.017  Score=44.16  Aligned_cols=78  Identities=8%  Similarity=0.120  Sum_probs=52.1

Q ss_pred             cchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHH
Q 019008          120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALEL  199 (347)
Q Consensus       120 ~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~  199 (347)
                      .|+.....++.. +|+.. -....-.+.+++...+.|+.|.+++++  ...+  .......|..|+++..+++|++|...
T Consensus         7 ~Ai~~~~k~~~~-~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~--~~~~--~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    7 NAIKYYEKLLEL-DPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK--LKLD--PSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             HHHHHHHHHHHH-HCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC--HTHH--HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHH-CCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH--hCCC--CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            345555554444 33211 112222368999999999999999999  2222  23456666679999999999999999


Q ss_pred             HHHh
Q 019008          200 LHNV  203 (347)
Q Consensus       200 l~~a  203 (347)
                      |+.+
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9864

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=95.97  E-value=0.049  Score=44.87  Aligned_cols=89  Identities=8%  Similarity=-0.043  Sum_probs=66.6

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..++.++.. +|..   ...+..+...+...++|+.|.+.+++.+-.-|   +....+|+.|.++...++|
T Consensus        29 ~~~~~~~A~~~~~~~~~~-~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~  101 (135)
T TIGR02552        29 QQGRYDEALKLFQLLAAY-DPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAALDP---DDPRPYFHAAECLLALGEP  101 (135)
T ss_pred             HcccHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCH
Confidence            344455566666665554 4432   55677888899999999999999987654222   2466678899999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|..
T Consensus       102 ~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552       102 ESALKALDLAIEICGEN  118 (135)
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            999999999997 7764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK12370 invasion protein regulator; Provisional

Probab=95.96  E-value=0.25  Score=51.45  Aligned_cols=207  Identities=10%  Similarity=-0.017  Sum_probs=117.7

Q ss_pred             cccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHH
Q 019008          118 PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKAL  197 (347)
Q Consensus       118 ~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~  197 (347)
                      ...|+..++.|+.. +|+.   ...|..+-..+...+.++.|...+++.+---|   +....+|+.|.++..+++|++|.
T Consensus       320 ~~~A~~~~~~Al~l-dP~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P---~~~~a~~~lg~~l~~~G~~~eAi  392 (553)
T PRK12370        320 MIKAKEHAIKATEL-DHNN---PQALGLLGLINTIHSEYIVGSLLFKQANLLSP---ISADIKYYYGWNLFMAGQLEEAL  392 (553)
T ss_pred             HHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHH
Confidence            34567777777654 6654   45678888889999999999999998654222   22345677799999999999999


Q ss_pred             HHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh----cchhHHHHHHHH-hcCChHHH
Q 019008          198 ELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN----FSQPYMELVNTY-NTGKIVEL  271 (347)
Q Consensus       198 ~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~----~~~pY~~la~a~-~~g~~~~~  271 (347)
                      .+|+.++. .|.......     .+  +..+...|+.. .    .-....+..+.    ....|..++.++ ..|+.++-
T Consensus       393 ~~~~~Al~l~P~~~~~~~-----~~--~~~~~~~g~~e-e----A~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA  460 (553)
T PRK12370        393 QTINECLKLDPTRAAAGI-----TK--LWITYYHTGID-D----AIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA  460 (553)
T ss_pred             HHHHHHHhcCCCChhhHH-----HH--HHHHHhccCHH-H----HHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence            99999998 786422111     11  11123345532 1    11112222211    122466677776 56888877


Q ss_pred             HHHHHhcccccccccc-ccHHHHHHH---HHHHHHHHHHHhhhhccc--HHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          272 ETYVQTNREKFESDNN-LGLVKQVVS---SMYKRNIQRLTQTYLTLS--LQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       272 ~~~~~~~~~~f~~D~n-~gLV~~~~~---~~~r~~I~~L~~~Ys~Is--L~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      .+.+.+.......+-+ .+++..+..   .--+..|+++-+.+.+-+  ..+.+.-..+-++.+.+.+..+++++|-.
T Consensus       461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  538 (553)
T PRK12370        461 RKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNEDNI  538 (553)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHHhhccchH
Confidence            7776664444333211 111111100   111122333333332222  33344433444577888888999988754

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.65  E-value=0.023  Score=41.89  Aligned_cols=60  Identities=23%  Similarity=0.206  Sum_probs=50.0

Q ss_pred             HHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          147 LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       147 l~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      -+.++..+.|+.|+.++++-+.--|   +....++..|.++..+++|++|.+.|+.++. .|..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDP---DDPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCc---ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            4678999999999999999765423   2456677789999999999999999999997 8864

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.64  E-value=0.025  Score=35.24  Aligned_cols=31  Identities=19%  Similarity=0.395  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      .++|+-|.++..+++|++|.++|+.++. .|.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            5789999999999999999999999997 774

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.64  E-value=0.6  Score=44.24  Aligned_cols=248  Identities=17%  Similarity=0.167  Sum_probs=133.1

Q ss_pred             HHHHHhHHHHhhhhhhhhhhhhhcCchhhHHHHHHHHHHhh-hcccchhhhhhHHHHHHHHHhcCChhhhhchhHHHHHH
Q 019008           26 DYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCM-YCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINV  104 (347)
Q Consensus        26 ~~L~~~~~~l~~~~~~~~~~L~~ldp~~~sl~~L~vL~~~~-~~~~~~~~~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l  104 (347)
                      +++++.+..+.+..+-. +++..=.|+-..-+-+|--.+.. .....-..+...+.+..+.-...+..  ..++..|...
T Consensus         5 ~l~~~Aek~lk~~~~~~-~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~A   81 (282)
T PF14938_consen    5 ELIKEAEKKLKKSSGFF-SFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEA   81 (282)
T ss_dssp             HHHHHHHHHCS---TCC-CHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHH
T ss_pred             HHHHHHHHHhccccchh-hhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence            44555555443322222 33322245555555566544332 11111123444444444433322211  1233444443


Q ss_pred             HHHHHHhHhhhcccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhc-CCchhhhhhhccccc--cc-CCchhhHH
Q 019008          105 CKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLA-KCYKAGLSVLEDDIY--EI-NLPRDFFL  178 (347)
Q Consensus       105 ~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~-~~y~~Al~~l~~~i~--~i-~~~~~~l~  178 (347)
                      +..+.    .. +|..++..+..|+.-+...+.  .-.-.+..+.+.+-.. +.++.|...+.+..-  .- +.+.....
T Consensus        82 a~~~k----~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~  156 (282)
T PF14938_consen   82 ANCYK----KG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAE  156 (282)
T ss_dssp             HHHHH----HT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHH----hh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHH
Confidence            33332    22 566789999999988876553  3344666677777777 899999999988543  22 23556677


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhcCCc-cchhHH-HHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhh------hh
Q 019008          179 YCYYGGMIFIGQKRFRKALELLHNVVTAPM-SSINAI-AVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRN------LK  250 (347)
Q Consensus       179 Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P~-~~~s~i-~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~------~k  250 (347)
                      .+--.|.+++.+++|++|.+.|+.+...+. +..... .-+.+=+-+|+.|. .|+.. ..    ...+.+.      |.
T Consensus       157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~-~~D~v-~A----~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA-MGDYV-AA----RKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH-TT-HH-HH----HHHHHHHGTTSTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH-cCCHH-HH----HHHHHHHHhhCCCCC
Confidence            777889999999999999999999997553 222222 12223344555544 56543 11    1111111      00


Q ss_pred             h--cchhHHHHHHHHhcCChHHHHHHHHhcccccccccc
Q 019008          251 N--FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNN  287 (347)
Q Consensus       251 ~--~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n  287 (347)
                      +  -+.-=.+|.+||+.||.+.|.+.+..+..+=.-|+-
T Consensus       231 ~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w  269 (282)
T PF14938_consen  231 SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW  269 (282)
T ss_dssp             TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred             CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence            0  112344788999999999999999999887776653

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=3  Score=40.15  Aligned_cols=236  Identities=19%  Similarity=0.167  Sum_probs=145.6

Q ss_pred             hhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcc--cccccCCch
Q 019008           97 VPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLED--DIYEINLPR  174 (347)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~--~i~~i~~~~  174 (347)
                      ..+.+..+++.+++.+...    .|.+.++....+--.+|--+- +..+-+|+.+-.++-....+.++.  ++.+  ...
T Consensus       114 ~~ea~~n~aeyY~qi~D~~----ng~~~~~~~~~~a~stg~KiD-v~l~kiRlg~~y~d~~vV~e~lE~~~~~iE--kGg  186 (412)
T COG5187         114 GSEADRNIAEYYCQIMDIQ----NGFEWMRRLMRDAMSTGLKID-VFLCKIRLGLIYGDRKVVEESLEVADDIIE--KGG  186 (412)
T ss_pred             HHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHhcccchh-hHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hCC
Confidence            4466778888777765433    366666665555322232222 234556777777775555555443  2221  133


Q ss_pred             hh---HHHHHHHHHHHHhhhcHHHHHHHHHHhhcCCc-c-chhHHHHHHHHHHHHHHHHhcCCCCCCCCcc-cCHHHhhh
Q 019008          175 DF---FLYCYYGGMIFIGQKRFRKALELLHNVVTAPM-S-SINAIAVEAYKKYILVSLIHHGQFSSTLPKY-TSSAAQRN  248 (347)
Q Consensus       175 ~~---l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P~-~-~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~-~s~~~~r~  248 (347)
                      |+   -+|--|-|+-.+..+++++|-..|.-++..-. + -.|-  -.+...-+..+++...+.. --.|. -+|-+...
T Consensus       187 DWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY--~~~vrYa~~~Gl~~leR~d-iktki~dspevl~v  263 (412)
T COG5187         187 DWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISY--SRAVRYAIFCGLLRLERRD-IKTKILDSPEVLDV  263 (412)
T ss_pred             CHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccH--HHHHHHHHHhhhheeehhh-hhhhhcCCHHHHHh
Confidence            33   48999999999999999999999999985332 2 1221  1233455666766332211 00000 13322222


Q ss_pred             hhh--cchhHHHHHH-HHhcCChHHHHHHHHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCC
Q 019008          249 LKN--FSQPYMELVN-TYNTGKIVELETYVQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQL  324 (347)
Q Consensus       249 ~k~--~~~pY~~la~-a~~~g~~~~~~~~~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l  324 (347)
                      +-+  ....-.+++. .|..+=..-|...+.-+-+..+.|... .-+.--+...+|+.--.+-.+|.++||..+|+..|+
T Consensus       264 i~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvREMRrrvYaQlLESYr~lsl~sMA~tFgV  343 (412)
T COG5187         264 IGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVREMRRRVYAQLLESYRLLSLESMAQTFGV  343 (412)
T ss_pred             ccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCc
Confidence            211  1122334443 334333347888888888889999876 355666677888888899999999999999999998


Q ss_pred             CChhhHHHHHHHHhhcccc
Q 019008          325 NSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       325 ~s~~eaE~~v~~mI~~G~~  343 (347)
                      + .+=++.=+.+-|-+|.|
T Consensus       344 S-V~yvdrDLg~FIp~~~L  361 (412)
T COG5187         344 S-VEYVDRDLGEFIPEGRL  361 (412)
T ss_pred             c-HHHHhhhHHhhCCCCce
Confidence            7 77777778888887765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.23  E-value=0.042  Score=40.04  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh-cHHHHHHHHHHhhc-CC
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK-RFRKALELLHNVVT-AP  207 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k-~y~~A~~~l~~ai~-~P  207 (347)
                      .+..+-..+...+.|+.|+..+++.+-- +  .+....+|..|.++..++ +|++|...|+.|+. .|
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL-D--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHH-S--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc-C--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4556677888999999999999987653 2  234668899999999999 89999999999986 55

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=95.21  E-value=0.15  Score=36.79  Aligned_cols=86  Identities=13%  Similarity=0.059  Sum_probs=59.3

Q ss_pred             hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHH
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR  194 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~  194 (347)
                      .+....++..++.++... |..   ...+..+...+...+.++.|...+.+.+-..+..   ...++..|.++...++|+
T Consensus        13 ~~~~~~A~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   85 (100)
T cd00189          13 LGDYDEALEYYEKALELD-PDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN---AKAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             HhcHHHHHHHHHHHHhcC-Ccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---hhHHHHHHHHHHHHHhHH
Confidence            344555667777666543 322   1456777788888899999998887754322211   156777888899999999


Q ss_pred             HHHHHHHHhhc-CC
Q 019008          195 KALELLHNVVT-AP  207 (347)
Q Consensus       195 ~A~~~l~~ai~-~P  207 (347)
                      +|...|+.++. .|
T Consensus        86 ~a~~~~~~~~~~~~   99 (100)
T cd00189          86 EALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHccCC
Confidence            99999988886 44

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.09  E-value=0.24  Score=42.10  Aligned_cols=90  Identities=11%  Similarity=-0.003  Sum_probs=72.5

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...+....++..++.++ +.+|..   ...|..+-..|...+.|+.|...+++.+--   ..+....++..|.++..+++
T Consensus        35 ~~~g~~~~A~~~~~~al-~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---~p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         35 WQEGDYSRAVIDFSWLV-MAQPWS---WRAHIALAGTWMMLKEYTTAINFYGHALML---DASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHcCCHHHHHHHHHHHH-HcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHcCC
Confidence            34555666778887775 446643   567788999999999999999999997652   22457788999999999999


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      +++|...|+.++. .|..
T Consensus       108 ~~eAi~~~~~Al~~~p~~  125 (144)
T PRK15359        108 PGLAREAFQTAIKMSYAD  125 (144)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            9999999999998 7865

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=94.76  E-value=0.38  Score=45.50  Aligned_cols=94  Identities=11%  Similarity=-0.009  Sum_probs=75.8

Q ss_pred             cccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHH
Q 019008          116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK  195 (347)
Q Consensus       116 ~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~  195 (347)
                      +....++..++..+.++..+ ..-...|-.+-..++..+.|+.|...+.+-+-..|.+...-.-.|..|.++..++++++
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~  235 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK  235 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence            44556788888888887653 33345678888999999999999999988776666555666777888999999999999


Q ss_pred             HHHHHHHhhc-CCccc
Q 019008          196 ALELLHNVVT-APMSS  210 (347)
Q Consensus       196 A~~~l~~ai~-~P~~~  210 (347)
                      |...|+.++. .|.+.
T Consensus       236 A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        236 AKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHHHCcCCH
Confidence            9999999997 99854

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.56  E-value=0.076  Score=33.24  Aligned_cols=31  Identities=19%  Similarity=0.286  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      .-+|..|.++..+++|++|.++|++|+. -|.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4578899999999999999999999997 664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.55  E-value=0.33  Score=47.76  Aligned_cols=90  Identities=13%  Similarity=0.075  Sum_probs=70.7

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....|+..++.|+.. +|+.   ...+..+...++..+.|+.|+..+++.+-- +  .+....++..|.++..+++|
T Consensus        14 ~~~~~~~Ai~~~~~Al~~-~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~--P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDL-DPNN---AELYADRAQANIKLGNFTEAVADANKAIEL-D--PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--cCCHHHHHHHHHHHHHhCCH
Confidence            345555688888888764 6543   457788889999999999999999987542 2  13455677889999999999


Q ss_pred             HHHHHHHHHhhc-CCccc
Q 019008          194 RKALELLHNVVT-APMSS  210 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~~  210 (347)
                      ++|...|+.++. .|.+.
T Consensus        87 ~eA~~~~~~al~l~P~~~  104 (356)
T PLN03088         87 QTAKAALEKGASLAPGDS  104 (356)
T ss_pred             HHHHHHHHHHHHhCCCCH
Confidence            999999999997 88754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=94.11  E-value=0.74  Score=41.68  Aligned_cols=94  Identities=12%  Similarity=0.040  Sum_probs=69.5

Q ss_pred             hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh----
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ----  190 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~----  190 (347)
                      .++...++..+..++... |++......+..+...+...+.|+.|...+++-+-..|.+...-.-+|..|.++...    
T Consensus        46 ~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~  124 (235)
T TIGR03302        46 SGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV  124 (235)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence            455556777777766554 433323346677888999999999999999987654454444444578889998876    


Q ss_pred             ----hcHHHHHHHHHHhhc-CCcc
Q 019008          191 ----KRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       191 ----k~y~~A~~~l~~ai~-~P~~  209 (347)
                          +++++|.+.|+.++. .|.+
T Consensus       125 ~~~~~~~~~A~~~~~~~~~~~p~~  148 (235)
T TIGR03302       125 DRDQTAAREAFEAFQELIRRYPNS  148 (235)
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCC
Confidence                899999999999997 8875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=94.03  E-value=6.5  Score=38.42  Aligned_cols=216  Identities=14%  Similarity=0.156  Sum_probs=129.8

Q ss_pred             cchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhccc--ccccCCchhh---HHHHHHHHHHHHhhhcHH
Q 019008          120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDD--IYEINLPRDF---FLYCYYGGMIFIGQKRFR  194 (347)
Q Consensus       120 ~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~--i~~i~~~~~~---l~Y~yy~G~i~~~~k~y~  194 (347)
                      .|+..++....+--..|.-+- +--..+|+.+-..+.+-..+.+++.  +++  ...||   =||--|-|+-.++.++++
T Consensus       122 na~~~~~~t~~ktvs~g~kiD-Vvf~~iRlglfy~D~~lV~~~iekak~liE--~GgDWeRrNRlKvY~Gly~msvR~Fk  198 (393)
T KOG0687|consen  122 NALEALRKTYEKTVSLGHKID-VVFYKIRLGLFYLDHDLVTESIEKAKSLIE--EGGDWERRNRLKVYQGLYCMSVRNFK  198 (393)
T ss_pred             HHHHHHHHHHHHHhhcccchh-hHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hCCChhhhhhHHHHHHHHHHHHHhHH
Confidence            366666554444222232222 2244567777766666665555542  222  23333   378889999999999999


Q ss_pred             HHHHHHHHhhcCCcc--chhHHHHHHHHHHHHHHHHhcCCCCCCCCcc-cCHHHhhhhhhcchhHHHHHHHHhcCChHHH
Q 019008          195 KALELLHNVVTAPMS--SINAIAVEAYKKYILVSLIHHGQFSSTLPKY-TSSAAQRNLKNFSQPYMELVNTYNTGKIVEL  271 (347)
Q Consensus       195 ~A~~~l~~ai~~P~~--~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~-~s~~~~r~~k~~~~pY~~la~a~~~g~~~~~  271 (347)
                      +|-.+|--++++-++  -.+-  -..--.-|++++|..-+.. =..|- .+|-+.-...+ ..+-.+++...=..+...|
T Consensus       199 ~Aa~Lfld~vsTFtS~El~~Y--~~~v~Ytv~~g~i~leR~d-lktKVi~~~Evl~vl~~-l~~~~q~l~SLY~C~Y~~F  274 (393)
T KOG0687|consen  199 EAADLFLDSVSTFTSYELMSY--ETFVRYTVITGLIALERVD-LKTKVIKCPEVLEVLHK-LPSVSQLLNSLYECDYSDF  274 (393)
T ss_pred             HHHHHHHHHcccccceecccH--HHHHHHHHHHhhheeccch-HHhhhcCcHHHHHHhhc-CchHHHHHHHHHhccHHHH
Confidence            999999999864432  1110  0011244566666432111 00000 12233332222 2244455544444455555


Q ss_pred             HHHH-Hhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          272 ETYV-QTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       272 ~~~~-~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      -.-+ .-....++.|.-. .-..--...++++.--.+-.+|.+++|..+|+..|++ .+=+++=+.+-|.+|.|
T Consensus       275 f~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLESYrsl~l~~MA~aFgVS-VefiDreL~rFI~~grL  347 (393)
T KOG0687|consen  275 FNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLESYRSLTLESMAKAFGVS-VEFIDRELGRFIAAGRL  347 (393)
T ss_pred             HHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-HHHHHhHHHHhhccCce
Confidence            5555 4447778888765 4455556677777888889999999999999999987 77778888888988876

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.03  E-value=0.091  Score=32.27  Aligned_cols=29  Identities=14%  Similarity=0.275  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          180 CYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       180 ~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      .|..|+++..+++|++|...|+.++. .|.
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            57889999999999999999999997 886

>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.00  E-value=1.2  Score=43.03  Aligned_cols=181  Identities=13%  Similarity=0.190  Sum_probs=104.8

Q ss_pred             HHHHHHHHhcCCchhhhhhhc---ccccccCC-chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc------CCcc---c
Q 019008          144 PEFLQLCLLAKCYKAGLSVLE---DDIYEINL-PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT------APMS---S  210 (347)
Q Consensus       144 ~~ll~l~l~~~~y~~Al~~l~---~~i~~i~~-~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~------~P~~---~  210 (347)
                      ..=+|+|+....|-.|--...   |..|+-+. ...-+.||-..-.|....++|=+|..+++.+--      -|++   .
T Consensus       175 LEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~V  254 (439)
T COG5071         175 LEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEV  254 (439)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccch
Confidence            445799999999999964433   23444333 334477888888888889999999866554432      2221   1


Q ss_pred             hhHHHH-------HHHHHHHHHHHH-hcCCCCCCCCcccCHHHhhhhhhcchhHHHHHHHHhcCChHHHHHHH-------
Q 019008          211 INAIAV-------EAYKKYILVSLI-HHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYV-------  275 (347)
Q Consensus       211 ~s~i~v-------ea~Kk~iLv~LL-~~G~i~~~lp~~~s~~~~r~~k~~~~pY~~la~a~~~g~~~~~~~~~-------  275 (347)
                      .|.+.-       +.-.-= |++-+ .+-+.. ++|+..                +++..|-.+.+-.+--+-       
T Consensus       255 LS~~v~F~iLtpy~neq~d-lvhKi~~d~kl~-sl~~~~----------------~lVk~f~vNelmrwp~V~~~y~~~l  316 (439)
T COG5071         255 LSNVVCFALLTPYDNEQAD-LLHKINADHKLN-SLPLLQ----------------QLVKCFIVNELMRWPKVAEIYGSAL  316 (439)
T ss_pred             hhcceeeEEecccccHHHH-HHHHhhhhhhhc-cchhhh----------------hHHHHHHHHHHHhhhHHHHHhHHHH
Confidence            111000       000000 01111 112222 333311                122222221111111111       


Q ss_pred             HhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          276 QTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       276 ~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      ....=.|-.|.+----..++.+++.+++|-++.-||||++..+..-+.++ ++++|..+..|+..|-.
T Consensus       317 ~~~~faF~~e~~~~~w~DL~krviEHN~RvI~~yYSrI~~~rl~~lld~~-~s~te~~ISdlVN~G~~  383 (439)
T COG5071         317 RSNVFAFNDEKGEKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLDMS-PSETEQFISDLVNKGHF  383 (439)
T ss_pred             HhhhhhhccchhhhhHHHHHHHHHHhhHhHHHHHhhhhhHHHHHHHHcCC-HHHHHHHHHHHHhcCcE
Confidence            11122344455544556788999999999999999999999999988887 89999999999999853

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.21  E-value=5.8  Score=39.77  Aligned_cols=203  Identities=13%  Similarity=0.130  Sum_probs=128.6

Q ss_pred             HhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC----C-chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhh
Q 019008          130 RKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN----L-PRDFFLYCYYGGMIFIGQKRFRKALELLHNVV  204 (347)
Q Consensus       130 ~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~----~-~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai  204 (347)
                      +-+..+..+.--+--.+++..+-.++|.+-+.+.++..-..+    . ..-...-.-+.|.....+|+|+.|..+|-.+.
T Consensus       177 RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  177 RDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            334433333322333467888888999998888888655321    1 11123456678999999999999998887766


Q ss_pred             c----CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCH-HHh--hhhhh--cchh-HHHHHHHHhcCChHHHHHH
Q 019008          205 T----APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSS-AAQ--RNLKN--FSQP-YMELVNTYNTGKIVELETY  274 (347)
Q Consensus       205 ~----~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~-~~~--r~~k~--~~~p-Y~~la~a~~~g~~~~~~~~  274 (347)
                      .    .|. -+++.=+..|   ...+-|.      ++++..-. .+.  -.||.  .+.| --++...|-++.....-+.
T Consensus       257 ~~~~d~~~-ivtpsdv~iY---ggLcALA------tfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~  326 (466)
T KOG0686|consen  257 FDHCDYPE-IVTPSDVAIY---GGLCALA------TFDRQDLKLNVIKNESFKLFLELEPQLREILFKFYSSKYASCLEL  326 (466)
T ss_pred             CCccCccc-eecchhhHHH---HhhHhhc------cCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHH
Confidence            3    122 1222222222   2222221      22211000 000  01111  1123 2346666767777788888


Q ss_pred             HHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          275 VQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       275 ~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      +.+.+....=|--. .=|..+..-++.+.+.+-...|+++.++.+|..++.+ ..+.|.=|.+.|.+|.+
T Consensus       327 L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~~s-v~~le~~l~~LI~~~~i  395 (466)
T KOG0686|consen  327 LREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFNTS-VAILESELLELILEGKI  395 (466)
T ss_pred             HHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhccc-HHHHHHHHHHHHHccch
Confidence            88877777777554 5677788888899999999999999999999999976 78899999999999865

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=93.16  E-value=0.52  Score=47.25  Aligned_cols=83  Identities=17%  Similarity=0.191  Sum_probs=63.4

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....+|..+..++... |..   ..+-..-.+.|+..+.|+.|+++..+.+.--|   +-.+..|+.+.+|+.+++|
T Consensus       212 ~~~~E~~AI~ll~~aL~~~-p~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP---~~f~~W~~La~~Yi~~~d~  284 (395)
T PF09295_consen  212 LMNEEVEAIRLLNEALKEN-PQD---SELLNLQAEFLLSKKKYELALEIAKKAVELSP---SEFETWYQLAECYIQLGDF  284 (395)
T ss_pred             hcCcHHHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcCCH
Confidence            4566778999999999663 333   44445677889999999999999999765322   3355666799999999999


Q ss_pred             HHHHHHHHHh
Q 019008          194 RKALELLHNV  203 (347)
Q Consensus       194 ~~A~~~l~~a  203 (347)
                      ++|+-.+..|
T Consensus       285 e~ALlaLNs~  294 (395)
T PF09295_consen  285 ENALLALNSC  294 (395)
T ss_pred             HHHHHHHhcC
Confidence            9999766633

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=93.12  E-value=0.15  Score=38.03  Aligned_cols=65  Identities=12%  Similarity=0.068  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHhcCCchhhhhhhcccccc---cCC-chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc
Q 019008          141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYE---INL-PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       141 ~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i~~-~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~  205 (347)
                      ..+..+-..+...+.|+.|++.+++.+--   .+. ..+.+.-++--|.++-.++++++|.++|+.|+.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45577888999999999999999986532   222 446788999999999999999999999999985

...

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=92.86  E-value=4.3  Score=35.05  Aligned_cols=88  Identities=6%  Similarity=-0.065  Sum_probs=65.1

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..+..++.. +|+.   ...+..+...+...+.++.|...+.+.+-.-+.   ....++..|.++..+++|
T Consensus        43 ~~~~~~~A~~~~~~~l~~-~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~g~~  115 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEH-DPDD---YLAYLALALYYQQLGELEKAEDSFRRALTLNPN---NGDVLNNYGTFLCQQGKY  115 (234)
T ss_pred             HCCCHHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcccH
Confidence            345555677777777654 4432   356778889999999999999999886543222   234566678999999999


Q ss_pred             HHHHHHHHHhhcCCc
Q 019008          194 RKALELLHNVVTAPM  208 (347)
Q Consensus       194 ~~A~~~l~~ai~~P~  208 (347)
                      ++|..+|+.++..|.
T Consensus       116 ~~A~~~~~~~~~~~~  130 (234)
T TIGR02521       116 EQAMQQFEQAIEDPL  130 (234)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999998653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=92.71  E-value=3.6  Score=39.88  Aligned_cols=92  Identities=12%  Similarity=-0.060  Sum_probs=58.4

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..+..++..-+..+......+..+...+...+.|+.|+.++++-+-. + +. ....+..-|.++..+++|
T Consensus        81 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~-~~-~~~~~~~la~~~~~~g~~  157 (389)
T PRK11788         81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-G-DF-AEGALQQLLEIYQQEKDW  157 (389)
T ss_pred             HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-C-cc-hHHHHHHHHHHHHHhchH
Confidence            44555566777766654311111112345677788888889999998888875432 1 11 223344567788888999


Q ss_pred             HHHHHHHHHhhc-CCc
Q 019008          194 RKALELLHNVVT-APM  208 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~  208 (347)
                      ++|.+.|+.++. .|.
T Consensus       158 ~~A~~~~~~~~~~~~~  173 (389)
T PRK11788        158 QKAIDVAERLEKLGGD  173 (389)
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            999988888886 454

>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]

Probab=92.55  E-value=11  Score=36.82  Aligned_cols=252  Identities=14%  Similarity=0.187  Sum_probs=144.9

Q ss_pred             hhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCC-CCchhhHHHHHHHHHHhc
Q 019008           75 ANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSS-TEHLTTLHPEFLQLCLLA  153 (347)
Q Consensus        75 ~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~-~~~lT~~H~~ll~l~l~~  153 (347)
                      -+-....++..+..-.|++.-   ..+.++|+.+++.-.... |...+..|-+.-.-.|.. +..+ .+..-++.+|...
T Consensus        63 le~vlnsi~sLi~~~~~e~~e---~~v~a~~ekva~q~n~~~-~~l~L~vLsnLfn~~d~~~~aR~-~Vy~~lv~la~~~  137 (378)
T KOG2753|consen   63 LECVLNSIVSLIKNAPPEKVE---EMVKAICEKVAKQPNDKT-ASLRLQVLSNLFNGVDKPTPARY-QVYMSLVTLAASC  137 (378)
T ss_pred             HHHHHHHHHHHHHhCCHHHhH---HHHHHHHHHHhcCccCCC-cccHHHHHHHHHhccCCCchHHH-HHHHHHHHHHhhc
Confidence            344556666666665555432   456666666665422111 323455665555555532 2223 3456788888888


Q ss_pred             CCchhhhhhhcc---cccccC-CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCCc-cchhHHHHHHHHHHHHHHHH
Q 019008          154 KCYKAGLSVLED---DIYEIN-LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPM-SSINAIAVEAYKKYILVSLI  228 (347)
Q Consensus       154 ~~y~~Al~~l~~---~i~~i~-~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P~-~~~s~i~vea~Kk~iLv~LL  228 (347)
                      +....-.+=+++   -+-+-+ +..+.-..+-......-..+.-++|..++..-+.+-+ .-+|.-..+|. +.|. .-+
T Consensus       138 ~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas~AredA~-rcV~-~av  215 (378)
T KOG2753|consen  138 KLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNASEAREDAM-RCVV-EAV  215 (378)
T ss_pred             ceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHHHHHH-HHHH-HHH
Confidence            887665554443   111111 1344444444434444444444556666555554333 23444444443 3332 223


Q ss_pred             hcCCCCCCCCc-ccCHHHhhhhhhcchhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHH---HHH
Q 019008          229 HHGQFSSTLPK-YTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKR---NIQ  304 (347)
Q Consensus       229 ~~G~i~~~lp~-~~s~~~~r~~k~~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~---~I~  304 (347)
                      ..-++. .++. -+-|.+ +.++.  .+-+++...|-+|.++...+..+++.+-.+.   +||+..  +++.|-   .+-
T Consensus       216 ~dP~~F-~fD~Ll~L~pV-~qLE~--d~i~qLL~IF~s~~L~aYveF~~~N~~Fvqs---~gl~~E--~~~~KMRLLTlm  286 (378)
T KOG2753|consen  216 KDPKIF-LFDHLLTLPPV-KQLEG--DLIHQLLKIFVSGKLDAYVEFVAANSGFVQS---QGLVHE--QNMAKMRLLTLM  286 (378)
T ss_pred             cCCcee-ccchhccCchH-HHhcc--chHHHHHHHHHhcchHHHHHHHHhChHHHHH---hcccHH--HHHHHHHHHHHH
Confidence            333333 3331 122223 33444  3578999999999999999888887765543   678776  455554   444


Q ss_pred             HHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          305 RLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       305 ~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      .|+..=..||..+|++.++++ ++|+|..|.++|+.|.+
T Consensus       287 ~LA~es~eisy~~l~k~LqI~-edeVE~fVIdaI~aklV  324 (378)
T KOG2753|consen  287 SLAEESNEISYDTLAKELQIN-EDEVELFVIDAIRAKLV  324 (378)
T ss_pred             HHhccCCCCCHHHHHHHhccC-HHHHHHHHHHHHHHHHH
Confidence            556667789999999999999 78899999999998754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=92.53  E-value=1.2  Score=44.30  Aligned_cols=70  Identities=10%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCC----------------------------chhhHHHHHHHHHHHHhhh
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----------------------------PRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~----------------------------~~~~l~Y~yy~G~i~~~~k  191 (347)
                      .++|..+.+..+..+.++.|..++.+..-.-+.                            ..+....++.-|.+++..+
T Consensus       263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~  342 (398)
T PRK10747        263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG  342 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence            567788888888888888888888765432110                            2244567889999999999


Q ss_pred             cHHHHHHHHHHhhc-CCcc
Q 019008          192 RFRKALELLHNVVT-APMS  209 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~~  209 (347)
                      +|.+|.+.|+.++. .|..
T Consensus       343 ~~~~A~~~le~al~~~P~~  361 (398)
T PRK10747        343 EWQEASLAFRAALKQRPDA  361 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCH
Confidence            99999999999998 6864

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.39  E-value=0.21  Score=31.08  Aligned_cols=30  Identities=23%  Similarity=0.369  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008          178 LYCYYGGMIFIGQKRFRKALELLHNVVT-AP  207 (347)
Q Consensus       178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P  207 (347)
                      +.++.-|.+|..++++++|.++|+.|+. .|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5688899999999999999999999996 55

...

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=91.84  E-value=0.44  Score=44.66  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=66.6

Q ss_pred             HHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHH
Q 019008          108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF  187 (347)
Q Consensus       108 ~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~  187 (347)
                      .+....+.+++..|+..++.|+.. +|+.   ..+...++...+..+.++.+.+++..-.-..+.+..   +...-|.++
T Consensus       152 ~a~~~~~~G~~~~A~~~~~~al~~-~P~~---~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~---~~~~la~~~  224 (280)
T PF13429_consen  152 LAEIYEQLGDPDKALRDYRKALEL-DPDD---PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD---LWDALAAAY  224 (280)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHH--TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC---HCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH---HHHHHHHHh
Confidence            334445678888899999999777 5543   345677888999999999977777653322222222   334459999


Q ss_pred             HhhhcHHHHHHHHHHhhc-CCcc
Q 019008          188 IGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       188 ~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..++++++|.++|+.+.. .|.+
T Consensus       225 ~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  225 LQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             ccccccccccccccccccccccc
Confidence            999999999999999997 7754

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=91.56  E-value=0.32  Score=36.16  Aligned_cols=41  Identities=15%  Similarity=0.174  Sum_probs=34.1

Q ss_pred             HHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       302 ~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      .|++.-+---++|++|||..++++ ++.+|.++..+|+.|.+
T Consensus         4 ~i~~~l~~~~~~S~~eLa~~~~~s-~~~ve~mL~~l~~kG~I   44 (69)
T PF09012_consen    4 EIRDYLRERGRVSLAELAREFGIS-PEAVEAMLEQLIRKGYI   44 (69)
T ss_dssp             HHHHHHHHS-SEEHHHHHHHTT---HHHHHHHHHHHHCCTSC
T ss_pred             HHHHHHHHcCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcE
Confidence            567777777889999999999998 89999999999999976

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=91.49  E-value=6.5  Score=42.01  Aligned_cols=60  Identities=8%  Similarity=0.056  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~  205 (347)
                      ..+.+.++..|.+.+.++.|..+++.-.-     .+...| ......|+..+++++|.+.|+....
T Consensus       158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~-n~li~~~~~~g~~~~A~~lf~~M~~  217 (697)
T PLN03081        158 QYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASW-GTIIGGLVDAGNYREAFALFREMWE  217 (697)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeH-HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            34557888999999999999999887421     122222 2223456677999999999998875

>PLN03218 maturation of RBCL 1; Provisional

Probab=91.34  E-value=11  Score=42.80  Aligned_cols=85  Identities=18%  Similarity=0.126  Sum_probs=44.6

Q ss_pred             hhHHHHHHHH-hcCChHHHHHHHHhccc-ccc--------------ccccccHHHHHHHHHHHHHHHHHHhhhhcccHHH
Q 019008          254 QPYMELVNTY-NTGKIVELETYVQTNRE-KFE--------------SDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQD  317 (347)
Q Consensus       254 ~pY~~la~a~-~~g~~~~~~~~~~~~~~-~f~--------------~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~d  317 (347)
                      ..|..|..+| +.|+.++-.++.+.-.+ -+.              +-|.+.-+.++...+.+.++.-=..+|..+ + +
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL-L-~  762 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL-L-V  762 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-H-H
Confidence            4677777777 44666665555554321 122              222333333344444444444344455544 1 2


Q ss_pred             HHHHcCCCChhhHHHHHHHHhhccc
Q 019008          318 IANTVQLNSSKEAEMHVLQMVTFEV  342 (347)
Q Consensus       318 Ia~~l~l~s~~eaE~~v~~mI~~G~  342 (347)
                      ..  ......++++.+...|++.|.
T Consensus       763 a~--~k~G~le~A~~l~~~M~k~Gi  785 (1060)
T PLN03218        763 AS--ERKDDADVGLDLLSQAKEDGI  785 (1060)
T ss_pred             HH--HHCCCHHHHHHHHHHHHHcCC
Confidence            22  233457788888888888875

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=91.28  E-value=7.6  Score=41.11  Aligned_cols=91  Identities=11%  Similarity=0.070  Sum_probs=68.2

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      ....+.+..++..+..++.. +|..   ...+..+.+.+...+.|+.|..++++.+-.-|   .....+++.|.++...+
T Consensus       135 ~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g  207 (899)
T TIGR02917       135 YLGLGQLELAQKSYEQALAI-DPRS---LYAKLGLAQLALAENRFDEARALIDEVLTADP---GNVDALLLKGDLLLSLG  207 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhc-CCCC---hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHhcC
Confidence            34456667788888887754 5533   23456778899999999999999988543222   23456777899999999


Q ss_pred             cHHHHHHHHHHhhc-CCcc
Q 019008          192 RFRKALELLHNVVT-APMS  209 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~~  209 (347)
                      +|++|..+|+.++. .|..
T Consensus       208 ~~~~A~~~~~~a~~~~p~~  226 (899)
T TIGR02917       208 NIELALAAYRKAIALRPNN  226 (899)
T ss_pred             CHHHHHHHHHHHHhhCCCC
Confidence            99999999999997 7764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=91.28  E-value=1.9  Score=38.77  Aligned_cols=98  Identities=11%  Similarity=0.004  Sum_probs=67.8

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHH-HHhcCC--chhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQL-CLLAKC--YKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l-~l~~~~--y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~  189 (347)
                      ...+....|+..++.|+.. +|+.   ..++..+... +...+.  ++.|..++++.+-.-|   +....++..|.++..
T Consensus        84 ~~~g~~~~A~~a~~~Al~l-~P~~---~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP---~~~~al~~LA~~~~~  156 (198)
T PRK10370         84 LWRNDYDNALLAYRQALQL-RGEN---AELYAALATVLYYQAGQHMTPQTREMIDKALALDA---NEVTALMLLASDAFM  156 (198)
T ss_pred             HHCCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC---CChhHHHHHHHHHHH
Confidence            3456666788888877665 5543   3355666663 466666  5889999988765322   235677888999999


Q ss_pred             hhcHHHHHHHHHHhhc-CCccchhHHHHH
Q 019008          190 QKRFRKALELLHNVVT-APMSSINAIAVE  217 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~-~P~~~~s~i~ve  217 (347)
                      +++|++|..+++.++. .|...-..-+++
T Consensus       157 ~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        157 QADYAQAIELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            9999999999999996 666433333334

>PLN03218 maturation of RBCL 1; Provisional

Probab=91.20  E-value=9.3  Score=43.25  Aligned_cols=18  Identities=17%  Similarity=0.093  Sum_probs=12.7

Q ss_pred             CChhhHHHHHHHHhhccc
Q 019008          325 NSSKEAEMHVLQMVTFEV  342 (347)
Q Consensus       325 ~s~~eaE~~v~~mI~~G~  342 (347)
                      ...++|..++.+|.+.|.
T Consensus       733 G~~eeAlelf~eM~~~Gi  750 (1060)
T PLN03218        733 NQLPKALEVLSEMKRLGL  750 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCC
Confidence            346777777777777764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=90.93  E-value=6.4  Score=37.65  Aligned_cols=116  Identities=9%  Similarity=0.048  Sum_probs=80.0

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC-chhhHHHHHHHHHHHHhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~-~~~~l~Y~yy~G~i~~~~  190 (347)
                      ....+....++..++.++.+ +|..   ...|..+...+...+.++.|...+++.+-..+. +......++.-|.++..+
T Consensus       124 ~~~~G~~~~A~~~~~~al~~-~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~  199 (355)
T cd05804         124 LEEAGQYDRAEEAARRALEL-NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER  199 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhh-CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence            34556666788888888876 4433   345677889999999999999999986643332 222344566788999999


Q ss_pred             hcHHHHHHHHHHhhc-CCccchhHHHHHHHHH-HHHHHHHhcCCCC
Q 019008          191 KRFRKALELLHNVVT-APMSSINAIAVEAYKK-YILVSLIHHGQFS  234 (347)
Q Consensus       191 k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk-~iLv~LL~~G~i~  234 (347)
                      +++++|...|+.++. .|.   +..+.+.+.. +.+-.+...|...
T Consensus       200 G~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~g~~~  242 (355)
T cd05804         200 GDYEAALAIYDTHIAPSAE---SDPALDLLDAASLLWRLELAGHVD  242 (355)
T ss_pred             CCHHHHHHHHHHHhccccC---CChHHHHhhHHHHHHHHHhcCCCC
Confidence            999999999999975 342   1222333344 5566666667544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=90.76  E-value=0.89  Score=32.55  Aligned_cols=63  Identities=14%  Similarity=0.068  Sum_probs=48.2

Q ss_pred             HHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          144 PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..+...+...+.++.|.+.+.+.+-.-+..   ...++..|.++...++|++|..+|+.++. .|..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            345566777899999999988754322221   26678899999999999999999999997 6654

>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]

Probab=90.62  E-value=22  Score=38.74  Aligned_cols=59  Identities=14%  Similarity=0.178  Sum_probs=53.5

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008          286 NNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       286 ~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~  344 (347)
                      ++...|..+....+.+.++.++++|.+||++.+.+-+..-|+-++|.+++++.+.|.+-
T Consensus       421 ~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~~~~~lEk~~v~a~k~~~v~  479 (988)
T KOG2072|consen  421 DKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFFSAFELEKLLVEAAKHNDVS  479 (988)
T ss_pred             CccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHhcccee
Confidence            34789999999999999999999999999999999988889999999999998877653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=90.24  E-value=18  Score=34.90  Aligned_cols=90  Identities=11%  Similarity=0.028  Sum_probs=50.6

Q ss_pred             hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCc--hhhHHHHHHHHHHHHhhhc
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP--RDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~--~~~l~Y~yy~G~i~~~~k~  192 (347)
                      .+....++..+..++.. +|.   -...+..+...+...+.|+.|...+++-+..-+.+  .....|++-.|.++..+++
T Consensus       120 ~g~~~~A~~~~~~~l~~-~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  195 (389)
T PRK11788        120 AGLLDRAEELFLQLVDE-GDF---AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD  195 (389)
T ss_pred             CCCHHHHHHHHHHHHcC-Ccc---hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence            34444556666655543 221   13455666777777777777777766543321211  1233344455666677777


Q ss_pred             HHHHHHHHHHhhc-CCc
Q 019008          193 FRKALELLHNVVT-APM  208 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~  208 (347)
                      +++|...|+.++. .|.
T Consensus       196 ~~~A~~~~~~al~~~p~  212 (389)
T PRK11788        196 LDAARALLKKALAADPQ  212 (389)
T ss_pred             HHHHHHHHHHHHhHCcC
Confidence            7777777777775 454

>TIGR00540 hemY_coli hemY protein

Probab=89.81  E-value=13  Score=37.15  Aligned_cols=91  Identities=8%  Similarity=0.003  Sum_probs=66.1

Q ss_pred             HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008          110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~  189 (347)
                      +.+...+++..+...+..+..+. |+..  ..+.....++.+..+.|+.|+..++.-.-.-|.+.   .-.+..|.+++.
T Consensus       126 ~aa~~~g~~~~A~~~l~~a~~~~-p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~---~~l~ll~~~~~~  199 (409)
T TIGR00540       126 EAAQQRGDEARANQHLEEAAELA-GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK---EVLKLAEEAYIR  199 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Confidence            33445677777888888887665 4432  12334568999999999999999877443323232   335688999999


Q ss_pred             hhcHHHHHHHHHHhhcC
Q 019008          190 QKRFRKALELLHNVVTA  206 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~~  206 (347)
                      +++|++|.+.++.....
T Consensus       200 ~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       200 SGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HhhHHHHHHHHHHHHHc
Confidence            99999999999999964

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]

Probab=89.48  E-value=10  Score=40.54  Aligned_cols=83  Identities=13%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             HHHHhcCChHHHHHHHHhccccccccccc-----cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHH
Q 019008          260 VNTYNTGKIVELETYVQTNREKFESDNNL-----GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHV  334 (347)
Q Consensus       260 a~a~~~g~~~~~~~~~~~~~~~f~~D~n~-----gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v  334 (347)
                      +.|...||+..-...+-.+..+|.-=.|.     -|+.++..---|+-+-..+..|.++|++.+|....|+ ...|-.+|
T Consensus       661 sKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~rIqEEsLRTYLftYss~Y~SvSl~~LA~mFdLp-~~~VhsIi  739 (843)
T KOG1076|consen  661 SKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTERIQEESLRTYLFTYSSVYDSVSLAKLADMFDLP-EPKVHSII  739 (843)
T ss_pred             HHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHhCCC-chhHHHHH
Confidence            46778999999888666666666544443     4555666666677788889999999999999999999 67888899


Q ss_pred             HHHhhcccc
Q 019008          335 LQMVTFEVN  343 (347)
Q Consensus       335 ~~mI~~G~~  343 (347)
                      .+||-..++
T Consensus       740 SkmiineEl  748 (843)
T KOG1076|consen  740 SKMIINEEL  748 (843)
T ss_pred             HHHHHHHHh
Confidence            999987664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=89.47  E-value=0.52  Score=30.20  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=20.7

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhh
Q 019008          181 YYGGMIFIGQKRFRKALELLHNVV  204 (347)
Q Consensus       181 yy~G~i~~~~k~y~~A~~~l~~ai  204 (347)
                      ..-|.+|..+++|++|.++|++++
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            457999999999999999999966

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=89.38  E-value=0.32  Score=35.07  Aligned_cols=55  Identities=20%  Similarity=0.226  Sum_probs=41.2

Q ss_pred             HhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          151 LLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       151 l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      +..+.|+.|...+.+-+-..|   +.....+.-|.+++.+++|++|...|+.++. .|.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNP---DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTT---TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hhccCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            567888888888888654333   2455566788999999999999999999886 776

...

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=89.27  E-value=1.4  Score=35.94  Aligned_cols=72  Identities=10%  Similarity=-0.040  Sum_probs=55.1

Q ss_pred             hhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          131 KIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       131 r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      +.+|+.   ......+...++..++|+.|...+.+.+- .+  .+....++..|.++..+++|++|..+|+.++. .|.
T Consensus        11 ~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552        11 GLDSEQ---LEQIYALAYNLYQQGRYDEALKLFQLLAA-YD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             cCChhh---HHHHHHHHHHHHHcccHHHHHHHHHHHHH-hC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            345543   34567788899999999999999877543 12  12456777889999999999999999999997 554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=89.22  E-value=5  Score=42.16  Aligned_cols=85  Identities=9%  Similarity=0.051  Sum_probs=47.8

Q ss_pred             ccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHH
Q 019008          117 APIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKA  196 (347)
Q Consensus       117 ~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A  196 (347)
                      +...++..+..|+.. +|+.   ...|..+...+...+.|+.|+..+++.+-..|   +....+++.|.++..+++|++|
T Consensus       414 ~~~~A~~~~~kal~l-~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P---~~~~~~~~lg~~~~~~g~~~~A  486 (615)
T TIGR00990       414 EFAQAGKDYQKSIDL-DPDF---IFSHIQLGVTQYKEGSIASSMATFRRCKKNFP---EAPDVYNYYGELLLDQNKFDEA  486 (615)
T ss_pred             CHHHHHHHHHHHHHc-CccC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHccCHHHH
Confidence            333445555544433 3321   12344555556666666666666665433222   1233455567888888888888


Q ss_pred             HHHHHHhhc-CCc
Q 019008          197 LELLHNVVT-APM  208 (347)
Q Consensus       197 ~~~l~~ai~-~P~  208 (347)
                      ...|+.++. .|.
T Consensus       487 ~~~~~~Al~l~p~  499 (615)
T TIGR00990       487 IEKFDTAIELEKE  499 (615)
T ss_pred             HHHHHHHHhcCCc
Confidence            888888886 564

>TIGR00540 hemY_coli hemY protein

Probab=89.05  E-value=23  Score=35.30  Aligned_cols=95  Identities=8%  Similarity=0.083  Sum_probs=62.6

Q ss_pred             HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHH-HHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q 019008          110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQ-LCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI  188 (347)
Q Consensus       110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~-l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~  188 (347)
                      ..+...+.+..++..+..++.+..++.. ..  +..+.+ ..+..++.+.++..+++..-.-|.+.+ +.+...-|.++.
T Consensus       271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~-~~--~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~-~~ll~sLg~l~~  346 (409)
T TIGR00540       271 EHLIDCDDHDSAQEIIFDGLKKLGDDRA-IS--LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPK-CCINRALGQLLM  346 (409)
T ss_pred             HHHHHCCChHHHHHHHHHHHhhCCCccc-ch--hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHH
Confidence            3445667777888889988888654432 11  222222 223456677777777765433232222 578888899999


Q ss_pred             hhhcHHHHHHHHH--Hhhc-CCc
Q 019008          189 GQKRFRKALELLH--NVVT-APM  208 (347)
Q Consensus       189 ~~k~y~~A~~~l~--~ai~-~P~  208 (347)
                      .+++|++|.++|+  .++. .|.
T Consensus       347 ~~~~~~~A~~~le~a~a~~~~p~  369 (409)
T TIGR00540       347 KHGEFIEAADAFKNVAACKEQLD  369 (409)
T ss_pred             HcccHHHHHHHHHHhHHhhcCCC
Confidence            9999999999999  5766 565

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=88.81  E-value=2.6  Score=35.02  Aligned_cols=94  Identities=14%  Similarity=0.024  Sum_probs=66.6

Q ss_pred             hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~  190 (347)
                      .....+.+..+|...+.|+.. ..++....-.---+-..+-.-+.++.|+.++++.+-..|.......-.++.++....+
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~   88 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL   88 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence            344678888899999999874 4444433333334556667788999999999988766553222233334467999999


Q ss_pred             hcHHHHHHHHHHhhc
Q 019008          191 KRFRKALELLHNVVT  205 (347)
Q Consensus       191 k~y~~A~~~l~~ai~  205 (347)
                      +++++|.+++..++.
T Consensus        89 gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   89 GRPKEALEWLLEALA  103 (120)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999988874

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=88.77  E-value=1.3  Score=39.94  Aligned_cols=71  Identities=8%  Similarity=-0.042  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS  210 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~  210 (347)
                      ...+-.+.+.++..+.|+.|...+++-+-..|.+.....-+|..|.++..+++|++|...|+.++. .|.+.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            556677788999999999999999886544343333445678889999999999999999999997 88653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=88.75  E-value=1.8  Score=36.69  Aligned_cols=72  Identities=6%  Similarity=-0.081  Sum_probs=56.3

Q ss_pred             HHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008          129 IRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP  207 (347)
Q Consensus       129 i~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P  207 (347)
                      .++++|+.      +..+-..+...+.|+.|...+.+.+..   ..+...+++.-|.++..+++|++|.++|+.++. .|
T Consensus        19 al~~~p~~------~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         19 LLSVDPET------VYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHcCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34556642      334567888999999999998886532   223578889999999999999999999999997 77


Q ss_pred             cc
Q 019008          208 MS  209 (347)
Q Consensus       208 ~~  209 (347)
                      ..
T Consensus        90 ~~   91 (144)
T PRK15359         90 SH   91 (144)
T ss_pred             CC
Confidence            64

>smart00028 TPR Tetratricopeptide repeats

Probab=88.56  E-value=1.1  Score=25.55  Aligned_cols=29  Identities=21%  Similarity=0.369  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008          179 YCYYGGMIFIGQKRFRKALELLHNVVT-AP  207 (347)
Q Consensus       179 Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P  207 (347)
                      .++-.|.++..+++|++|..+|+.++. .|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            467789999999999999999999996 44

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=88.46  E-value=3.7  Score=35.35  Aligned_cols=70  Identities=17%  Similarity=0.048  Sum_probs=54.5

Q ss_pred             hhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       139 lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      -...+..+...+...+.|+.|+..+.+.+-..+.+.+...-++.-|.++...+++++|..+++.++. .|.
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3556677778888999999999999987543333334445567789999999999999999999997 444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=88.38  E-value=2.8  Score=36.26  Aligned_cols=92  Identities=12%  Similarity=0.058  Sum_probs=67.3

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      ....+....++..++.++...+.+    ...+..+...+...+.|+.|...+.+.+...+ ........+..|.++...+
T Consensus        75 ~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g  149 (234)
T TIGR02521        75 YQQLGELEKAEDSFRRALTLNPNN----GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAG  149 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcC
Confidence            334566667888888887764332    23556778889999999999999988764211 1223344566799999999


Q ss_pred             cHHHHHHHHHHhhc-CCc
Q 019008          192 RFRKALELLHNVVT-APM  208 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~  208 (347)
                      ++++|..+|+.++. .|.
T Consensus       150 ~~~~A~~~~~~~~~~~~~  167 (234)
T TIGR02521       150 DFDKAEKYLTRALQIDPQ  167 (234)
T ss_pred             CHHHHHHHHHHHHHhCcC
Confidence            99999999999997 554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=88.27  E-value=4  Score=35.13  Aligned_cols=90  Identities=10%  Similarity=-0.024  Sum_probs=58.8

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC----chhhHHHHHHHHHHHHh
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~----~~~~l~Y~yy~G~i~~~  189 (347)
                      ..+....++..++.|+.-. +++......|..+-.++...+.++.|...+.+.+..-+.    .......++..|..+..
T Consensus        47 ~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~  125 (168)
T CHL00033         47 SEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE  125 (168)
T ss_pred             HcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH
Confidence            4455666788888877553 333333457888899999999999999999886542221    22334455555666668


Q ss_pred             hhcHHHHHHHHHHhh
Q 019008          190 QKRFRKALELLHNVV  204 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai  204 (347)
                      +++|++|...+..++
T Consensus       126 ~g~~~~A~~~~~~a~  140 (168)
T CHL00033        126 QGDSEIAEAWFDQAA  140 (168)
T ss_pred             cccHHHHHHHHHHHH
Confidence            888876655555443

>PLN03077 Protein ECB2; Provisional

Probab=88.17  E-value=5.3  Score=43.76  Aligned_cols=56  Identities=14%  Similarity=0.211  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHH--HHhhhcHHHHHHHHHHhhc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI--FIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i--~~~~k~y~~A~~~l~~ai~  205 (347)
                      +.+.++..|.+.+.++.|..+++.-..     .+...|   ..+|  |+..+++++|.+.|+....
T Consensus       224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~---n~li~~~~~~g~~~eAl~lf~~M~~  281 (857)
T PLN03077        224 VVNALITMYVKCGDVVSARLVFDRMPR-----RDCISW---NAMISGYFENGECLEGLELFFTMRE  281 (857)
T ss_pred             hHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchh---HHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            446788889999999999999887321     122222   3333  5577899999999998875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=87.74  E-value=2.9  Score=44.62  Aligned_cols=92  Identities=5%  Similarity=0.022  Sum_probs=62.0

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      +...+....++..++.++.. +|+.   ...|..+.+.+...+.|+.|...+++-+-.-  + +...++++.|.++...+
T Consensus       294 l~~~g~~~eA~~~l~~al~l-~P~~---~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P-~~~~~~~~~a~al~~~G  366 (656)
T PRK15174        294 LIRTGQNEKAIPLLQQSLAT-HPDL---PYVRAMYARALRQVGQYTAASDEFVQLAREK--G-VTSKWNRYAAAALLQAG  366 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c-cchHHHHHHHHHHHHCC
Confidence            33445555677777776654 5543   3356667778888888888888776644321  2 22345666688889999


Q ss_pred             cHHHHHHHHHHhhc-CCccc
Q 019008          192 RFRKALELLHNVVT-APMSS  210 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~~~  210 (347)
                      ++++|...|+.++. .|...
T Consensus       367 ~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        367 KTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             CHHHHHHHHHHHHHhChhhc
Confidence            99999999999996 67643

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=87.31  E-value=4.6  Score=43.83  Aligned_cols=171  Identities=10%  Similarity=0.052  Sum_probs=98.1

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCC-CchhhHHHHHHHHHHhcCCchhhhhhhcccccccC-----------Cch-hhHH
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN-----------LPR-DFFL  178 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~-~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~-----------~~~-~~l~  178 (347)
                      ....++|..|+..++.++ ..+|.. ..--..+..+...++..+.++.|...+++-.-..|           .++ +...
T Consensus       282 yl~~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~  360 (765)
T PRK10049        282 YLKLHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ  360 (765)
T ss_pred             HHhcCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence            345677777888888765 345432 11123456666677899999999998775332111           123 5577


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHH-hcCCCCCCCCcccCHHHhhhhhh---cc
Q 019008          179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLI-HHGQFSSTLPKYTSSAAQRNLKN---FS  253 (347)
Q Consensus       179 Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL-~~G~i~~~lp~~~s~~~~r~~k~---~~  253 (347)
                      ..+.-|.++...+++++|.+.|+.++. .|.+. ..     +  +-+..+. ..|+.. .    .-....+..+.   ..
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~-~l-----~--~~lA~l~~~~g~~~-~----A~~~l~~al~l~Pd~~  427 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ-GL-----R--IDYASVLQARGWPR-A----AENELKKAEVLEPRNI  427 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HH-----H--HHHHHHHHhcCCHH-H----HHHHHHHHHhhCCCCh
Confidence            888899999999999999999999997 89862 11     1  1122222 234422 1    11111111111   11


Q ss_pred             hhHHHHH-HHHhcCChHHHHHHHHhccccccccccccHHHHHHH
Q 019008          254 QPYMELV-NTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS  296 (347)
Q Consensus       254 ~pY~~la-~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~  296 (347)
                      .-+...+ .+...|+..+-.+.+++-.+.+.+|...--.++.+.
T Consensus       428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~  471 (765)
T PRK10049        428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARD  471 (765)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            1222333 344667777777777766666666654443333333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=87.25  E-value=16  Score=38.64  Aligned_cols=91  Identities=14%  Similarity=0.109  Sum_probs=64.2

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...++...++..++.++....+ +   ...+..+.+.+...+.|+.|...+.+...  .........++..|.++...++
T Consensus        67 ~~~g~~~~A~~~~~~~~~~~~~-~---~~~~~~~a~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  140 (899)
T TIGR02917        67 LALGDYAAAEKELRKALSLGYP-K---NQVLPLLARAYLLQGKFQQVLDELPGKTL--LDDEGAAELLALRGLAYLGLGQ  140 (899)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCC-h---hhhHHHHHHHHHHCCCHHHHHHhhccccc--CCchhhHHHHHHHHHHHHHcCC
Confidence            3456666678888877665333 2   23456778889999999999888865321  1133456677888888888889


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|..+|+.++. .|..
T Consensus       141 ~~~A~~~~~~a~~~~~~~  158 (899)
T TIGR02917       141 LELAQKSYEQALAIDPRS  158 (899)
T ss_pred             HHHHHHHHHHHHhcCCCC
Confidence            9999999988886 6653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=86.99  E-value=12  Score=38.94  Aligned_cols=63  Identities=11%  Similarity=0.026  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCC
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP  207 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P  207 (347)
                      ++-.+.+.+-..++|+.|+.++++.|-+-|   ....+|+.-|+|+-..|++.+|.++++.|-..-
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htP---t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD  258 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTP---TLVELYMTKARILKHAGDLKEAAEAMDEARELD  258 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence            556678889999999999999999887644   357899999999999999999999999999743

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=86.75  E-value=1.5  Score=34.52  Aligned_cols=65  Identities=18%  Similarity=0.175  Sum_probs=48.2

Q ss_pred             HHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          145 EFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       145 ~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+....+..+.|+.|...+.+-+-.-|.......-.|.-|.++...++|++|...|+.++. .|.+
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            3456678889999999998876543232222234467789999999999999999999997 7764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=86.74  E-value=1.9  Score=37.37  Aligned_cols=68  Identities=21%  Similarity=0.191  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+..+...+...+.|+.|...+.+.+---+.+.+...+++.-|.++...++|++|..+++.++. .|..
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            4456667888899999999999876532222334567888999999999999999999999998 6754

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=86.51  E-value=2.8  Score=29.77  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .|.||.+.-+..+++|++|..+.+.++. -|.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence            4789999999999999999999999997 8875

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=86.47  E-value=1.7  Score=41.06  Aligned_cols=76  Identities=14%  Similarity=0.057  Sum_probs=56.3

Q ss_pred             HHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHH
Q 019008          147 LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILV  225 (347)
Q Consensus       147 l~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv  225 (347)
                      +.+.+..+.|+.|...+.+-+-..|.+...-.-+|+.|.+|...++|++|...|+.++. .|.+   ...-+|+-|...+
T Consensus       150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~dAl~klg~~  226 (263)
T PRK10803        150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAADAMFKVGVI  226 (263)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhHHHHHHHHH
Confidence            34445678999999998886665565444445678999999999999999999999997 8874   3334555554443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=86.44  E-value=0.82  Score=42.78  Aligned_cols=90  Identities=18%  Similarity=0.059  Sum_probs=46.1

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+.|..++..+..+..+. +++..+    ...+..+...+.++.+..++++-. ..+...+-..|++..|.++...|++
T Consensus        89 ~~~~~~~A~~~~~~~~~~~-~~~~~l----~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~a~~~~~~G~~  162 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERD-GDPRYL----LSALQLYYRLGDYDEAEELLEKLE-ELPAAPDSARFWLALAEIYEQLGDP  162 (280)
T ss_dssp             ----------------------------------H-HHHTT-HHHHHHHHHHHH-H-T---T-HHHHHHHHHHHHHCCHH
T ss_pred             ccccccccccccccccccc-cccchh----hHHHHHHHHHhHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHHHcCCH
Confidence            4566777888877777664 444433    346678899999999999998833 2222345678889999999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|.++|+.++. .|.+
T Consensus       163 ~~A~~~~~~al~~~P~~  179 (280)
T PF13429_consen  163 DKALRDYRKALELDPDD  179 (280)
T ss_dssp             HHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            999999999997 8974

>PRK11189 lipoprotein NlpI; Provisional

Probab=86.42  E-value=3.6  Score=39.16  Aligned_cols=89  Identities=10%  Similarity=0.042  Sum_probs=68.1

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....++..+..|+.. +|+.   ...|..+-..+...+.|+.|...+++.+- +++  +....++..|.++...++|
T Consensus        76 ~~g~~~~A~~~~~~Al~l-~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-l~P--~~~~a~~~lg~~l~~~g~~  148 (296)
T PRK11189         76 SLGLRALARNDFSQALAL-RPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLE-LDP--TYNYAYLNRGIALYYGGRY  148 (296)
T ss_pred             HCCCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCC--CCHHHHHHHHHHHHHCCCH
Confidence            345555677778777765 5543   45778888999999999999999988763 332  2344567789999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|.+.|+.++. .|..
T Consensus       149 ~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        149 ELAQDDLLAFYQDDPND  165 (296)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            999999999997 7865

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=85.32  E-value=2.6  Score=28.58  Aligned_cols=42  Identities=7%  Similarity=0.128  Sum_probs=32.1

Q ss_pred             HHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       301 ~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      +.|...-.-=-.+|..+||++++++ ..-+-.++.+|+++|.+
T Consensus         6 ~~Il~~l~~~~~~t~~ela~~~~is-~~tv~~~l~~L~~~g~I   47 (48)
T PF13412_consen    6 RKILNYLRENPRITQKELAEKLGIS-RSTVNRYLKKLEEKGLI   47 (48)
T ss_dssp             HHHHHHHHHCTTS-HHHHHHHHTS--HHHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCcCc
Confidence            3444444445679999999999998 78899999999999975

...

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=85.27  E-value=5.8  Score=43.11  Aligned_cols=94  Identities=9%  Similarity=-0.039  Sum_probs=73.3

Q ss_pred             HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008          110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~  189 (347)
                      ..+...+....|+..++.++.. .|..   ..++..+..++...+.++.|+..+++.+-.-|   +...+.|..|++++.
T Consensus       367 ~~l~~~g~~~eA~~~l~~al~~-~P~n---~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P---d~~~l~~~~a~~al~  439 (765)
T PRK10049        367 QVAKYSNDLPQAEMRARELAYN-APGN---QGLRIDYASVLQARGWPRAAENELKKAEVLEP---RNINLEVEQAWTALD  439 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHH
Confidence            3444556666788888888655 4433   45778899999999999999999998665323   345588899999999


Q ss_pred             hhcHHHHHHHHHHhhc-CCccc
Q 019008          190 QKRFRKALELLHNVVT-APMSS  210 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~-~P~~~  210 (347)
                      +++|++|...++.++. .|.+.
T Consensus       440 ~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        440 LQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999996 88754

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=84.95  E-value=1.6  Score=32.37  Aligned_cols=32  Identities=13%  Similarity=0.112  Sum_probs=28.0

Q ss_pred             hhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcC
Q 019008          175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVTA  206 (347)
Q Consensus       175 ~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~  206 (347)
                      +.+..+..-|.+|-.+++|++|.++|+.|+..
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            56778899999999999999999999999965

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=84.83  E-value=6.8  Score=41.20  Aligned_cols=89  Identities=10%  Similarity=0.011  Sum_probs=67.5

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+.+..++..+..|+.. +|.   ....+..+...+...+.|+.|...+++.+-. + + +....+|..|.++..+++|
T Consensus       343 ~~g~~~eA~~~~~kal~l-~P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~-p-~~~~~~~~lg~~~~~~g~~  415 (615)
T TIGR00990       343 LKGKHLEALADLSKSIEL-DPR---VTQSYIKRASMNLELGDPDKAEEDFDKALKL-N-S-EDPDIYYHRAQLHFIKGEF  415 (615)
T ss_pred             HcCCHHHHHHHHHHHHHc-CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-C-CCHHHHHHHHHHHHHcCCH
Confidence            456666678888887655 553   2446677788888999999999999886432 2 1 2345678889999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|.+
T Consensus       416 ~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       416 AQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             HHHHHHHHHHHHcCccC
Confidence            999999999997 7764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=84.80  E-value=17  Score=39.97  Aligned_cols=157  Identities=11%  Similarity=0.025  Sum_probs=99.7

Q ss_pred             hhcccccchHHHHHHHHhhCCC---CCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC------------CchhhHH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSS---TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN------------LPRDFFL  178 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~---~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~------------~~~~~l~  178 (347)
                      ..++|.+|...+++++..-.+.   +..+. .+..|.-.++.+..|+.|..++++-.-..|            ++.++.+
T Consensus       339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~-~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~  417 (822)
T PRK14574        339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLL-DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE  417 (822)
T ss_pred             hcCCcHHHHHHHHHHhhccccccCCCcchH-HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence            4677888888888776543211   11121 146788999999999999999987543222            2668899


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh------
Q 019008          179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN------  251 (347)
Q Consensus       179 Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~------  251 (347)
                      +....+++++..++..+|.+.++.... +|.+.  .+++      .+..+...-    ..|.    .....+|.      
T Consensus       418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~--~l~~------~~A~v~~~R----g~p~----~A~~~~k~a~~l~P  481 (822)
T PRK14574        418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ--NLRI------ALASIYLAR----DLPR----KAEQELKAVESLAP  481 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH------HHHHHHHhc----CCHH----HHHHHHHHHhhhCC
Confidence            999999999999999999999999996 99862  1111      111111111    1111    00011111      


Q ss_pred             -cchhHHHHHHHH-hcCChHHHHHHHHhcccccccccc
Q 019008          252 -FSQPYMELVNTY-NTGKIVELETYVQTNREKFESDNN  287 (347)
Q Consensus       252 -~~~pY~~la~a~-~~g~~~~~~~~~~~~~~~f~~D~n  287 (347)
                       ....+...+.+. ..|+..+.++.+++-.+.+.+|..
T Consensus       482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~  519 (822)
T PRK14574        482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP  519 (822)
T ss_pred             ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence             112333333333 447777777888888999999973

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=84.74  E-value=11  Score=33.38  Aligned_cols=124  Identities=14%  Similarity=0.141  Sum_probs=81.8

Q ss_pred             hhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcC
Q 019008           75 ANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAK  154 (347)
Q Consensus        75 ~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~  154 (347)
                      .+.+=..+.+.-++..-+.+|-+   +..+++.+.+.    +.-..|+..+.. ++.+..++++.-.+...++|.++..+
T Consensus        16 ~~~Le~elk~~~~n~~kesir~~---~~~l~~~~~~~----Gd~~~A~k~y~~-~~~~~~~~~~~id~~l~~irv~i~~~   87 (177)
T PF10602_consen   16 LEKLEAELKDAKSNLGKESIRMA---LEDLADHYCKI----GDLEEALKAYSR-ARDYCTSPGHKIDMCLNVIRVAIFFG   87 (177)
T ss_pred             HHHHHHHHHHHHhccchHHHHHH---HHHHHHHHHHh----hhHHHHHHHHHH-HhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence            34444555555566666667633   33333333332    222235555554 34445556666667788999999999


Q ss_pred             CchhhhhhhcccccccCC---chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcC
Q 019008          155 CYKAGLSVLEDDIYEINL---PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA  206 (347)
Q Consensus       155 ~y~~Al~~l~~~i~~i~~---~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~  206 (347)
                      +++.+...+++.--.+..   ..---+..-|.|+.++.+++|.+|-..|-.+.+.
T Consensus        88 d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen   88 DWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             CHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            999999999885333322   2233467889999999999999999999888863

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=84.50  E-value=9.4  Score=32.99  Aligned_cols=92  Identities=10%  Similarity=-0.036  Sum_probs=61.0

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc-
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR-  192 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~-  192 (347)
                      ..+....|+..++.|+... |++......+..+...+...+.|+.|...+.+.+-.-|.   ....++..|.++..+++ 
T Consensus        47 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~  122 (172)
T PRK02603         47 ADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---QPSALNNIAVIYHKRGEK  122 (172)
T ss_pred             HcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCh
Confidence            3455556788888877653 332223457788889999999999999999886643221   23444455777766655 


Q ss_pred             -------------HHHHHHHHHHhhc-CCcc
Q 019008          193 -------------FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 -------------y~~A~~~l~~ai~-~P~~  209 (347)
                                   |++|.++++.++. .|.+
T Consensus       123 ~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        123 AEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                         5667777777775 6654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=84.10  E-value=16  Score=38.91  Aligned_cols=59  Identities=10%  Similarity=-0.043  Sum_probs=24.7

Q ss_pred             HHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhh
Q 019008          143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVV  204 (347)
Q Consensus       143 H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai  204 (347)
                      |..+...+...+.++.|...+++.+---|   +....++..|.++..++++++|...++.++
T Consensus       113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P---~~~~a~~~la~~l~~~g~~~eA~~~~~~~~  171 (656)
T PRK15174        113 VLLVASVLLKSKQYATVADLAEQAWLAFS---GNSQIFALHLRTLVLMDKELQAISLARTQA  171 (656)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            33444444444444444444444322101   122333334444444444444444444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=84.02  E-value=7.5  Score=41.90  Aligned_cols=131  Identities=10%  Similarity=0.034  Sum_probs=85.1

Q ss_pred             chhhhhhHHHHHHHHHhcCChhhhhchh-HHHHHHHHHHH----------HhHhhhcccccchHHHHHHHHhhCCCCCch
Q 019008           71 TKERANTLVPIIARFITSCSAEQIRYVP-EKFINVCKRYK----------DQVLLLEAPIRGVGPMLTAIRKIQSSTEHL  139 (347)
Q Consensus        71 ~~~~~~~~~~~~~~fl~~~~~~Qlr~~~-~~~~~l~~~~~----------~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~l  139 (347)
                      +++.+.++..+...-++..-..|+-.+. .+...+++.+.          ....+.+...-+...+++ ++.++|+.   
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~-~~~~~Pd~---  119 (694)
T PRK15179         44 SEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRG-IHQRFPDS---  119 (694)
T ss_pred             chhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHH-HHhhCCCc---
Confidence            3345567888888888877777764222 22333333222          222334434334454444 44456643   


Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      ...+..+.+.+.+-+.++.|+...++-.-.   ..+....++--|+....+++|++|.+.|+.++. .|.
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence            456778888888888899888887775432   335678888899999999999999999999996 443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=83.91  E-value=1.7  Score=28.99  Aligned_cols=30  Identities=13%  Similarity=0.049  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          180 CYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       180 ~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ++.-|..|..++++++|..+|+.++. .|.+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            35568999999999999999999997 9976

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=83.75  E-value=38  Score=33.60  Aligned_cols=89  Identities=10%  Similarity=0.034  Sum_probs=63.9

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      +...+++..+...+..|.. .+|+.. +. ......+.++..++|+.|+..+++-.-.-|.+   .......+.+|+..+
T Consensus       128 A~~~g~~~~A~~~l~~A~~-~~~~~~-~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~---~~al~ll~~~~~~~g  201 (398)
T PRK10747        128 AQQRGDEARANQHLERAAE-LADNDQ-LP-VEITRVRIQLARNENHAARHGVDKLLEVAPRH---PEVLRLAEQAYIRTG  201 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHh-cCCcch-HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHH
Confidence            3567777778888888864 455432 22 22234789999999999999998854333322   345566689999999


Q ss_pred             cHHHHHHHHHHhhcC
Q 019008          192 RFRKALELLHNVVTA  206 (347)
Q Consensus       192 ~y~~A~~~l~~ai~~  206 (347)
                      +|++|.+.+......
T Consensus       202 dw~~a~~~l~~l~k~  216 (398)
T PRK10747        202 AWSSLLDILPSMAKA  216 (398)
T ss_pred             hHHHHHHHHHHHHHc
Confidence            999999998888863

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=83.72  E-value=4.5  Score=45.34  Aligned_cols=89  Identities=7%  Similarity=-0.087  Sum_probs=51.4

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      +.+.+..++..++.|+.. +|+.   ...|..+-..+...+.++.|+..+.+.+-.-|   +....++..|+++..++++
T Consensus       621 ~lG~~deA~~~l~~AL~l-~Pd~---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P---~~~~a~~nLA~al~~lGd~  693 (987)
T PRK09782        621 QRHNVPAAVSDLRAALEL-EPNN---SNYQAALGYALWDSGDIAQSREMLERAHKGLP---DDPALIRQLAYVNQRLDDM  693 (987)
T ss_pred             HCCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCH
Confidence            344444455555554443 3332   13445555555555666666666555433211   3356677778888888888


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|..
T Consensus       694 ~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        694 AATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            888888888875 6654

>PRK11189 lipoprotein NlpI; Provisional

Probab=82.74  E-value=5  Score=38.19  Aligned_cols=85  Identities=15%  Similarity=0.079  Sum_probs=61.7

Q ss_pred             hHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHH
Q 019008          122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLH  201 (347)
Q Consensus       122 i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~  201 (347)
                      |.-+..++.+.+.++......|...-..+...+.++.|...+++.+-.-|   +....++..|.++..+++|++|.+.|+
T Consensus        46 i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P---~~~~a~~~lg~~~~~~g~~~~A~~~~~  122 (296)
T PRK11189         46 LARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP---DMADAYNYLGIYLTQAGNFDAAYEAFD  122 (296)
T ss_pred             HHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            34444445443333344455677777788889999999988877654222   235677889999999999999999999


Q ss_pred             Hhhc-CCcc
Q 019008          202 NVVT-APMS  209 (347)
Q Consensus       202 ~ai~-~P~~  209 (347)
                      .++. .|..
T Consensus       123 ~Al~l~P~~  131 (296)
T PRK11189        123 SVLELDPTY  131 (296)
T ss_pred             HHHHhCCCC
Confidence            9998 7764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=82.40  E-value=1.4  Score=33.42  Aligned_cols=49  Identities=18%  Similarity=0.219  Sum_probs=38.8

Q ss_pred             cCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 019008          153 AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHN  202 (347)
Q Consensus       153 ~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~  202 (347)
                      .+.|+.|+.++++-+-..|... .-.|.|.-|.++...++|++|.++++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4789999999988665434222 556888899999999999999999998

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=82.28  E-value=2.3  Score=30.60  Aligned_cols=33  Identities=21%  Similarity=0.380  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       177 l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ...++.-|.++..+++|++|..+|+.++. .|.+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~   36 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN   36 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            45678899999999999999999999997 7764

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=82.25  E-value=9.8  Score=32.70  Aligned_cols=95  Identities=12%  Similarity=0.063  Sum_probs=68.0

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc-
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR-  192 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~-  192 (347)
                      +.++-..|+..+...-.|++.+ ..-...-..+...+...+.|+.|...+++=|---|.+..+--=+|..|+++..+.+ 
T Consensus        22 ~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~  100 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG  100 (142)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence            3444555777777777777654 33344556788999999999999998887443223222222236778999999988 


Q ss_pred             --------------HHHHHHHHHHhhc-CCcc
Q 019008          193 --------------FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 --------------y~~A~~~l~~ai~-~P~~  209 (347)
                                    -.+|+.-|+..|+ .|.+
T Consensus       101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen  101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence                          8999999999997 9974

>PLN03077 Protein ECB2; Provisional

Probab=82.17  E-value=50  Score=36.17  Aligned_cols=119  Identities=14%  Similarity=0.187  Sum_probs=63.4

Q ss_pred             HHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc---CCccchhHHHHHHHH
Q 019008          144 PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT---APMSSINAIAVEAYK  220 (347)
Q Consensus       144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~---~P~~~~s~i~vea~K  220 (347)
                      +.++..|.+.+.++.|..+++..      ..+...|.-. ...|+..+++++|.+.|+....   .|....-...+.++-
T Consensus       528 naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~l-I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~  600 (857)
T PLN03077        528 NALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNIL-LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS  600 (857)
T ss_pred             hHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence            35667777777888887777664      1122222221 2246678899999999998775   454322222333332


Q ss_pred             HHHHHHHHhcCCCCCCCCcccCHHH-hhhhhhcchhHHHHHHHH-hcCChHHHHHHHHhc
Q 019008          221 KYILVSLIHHGQFSSTLPKYTSSAA-QRNLKNFSQPYMELVNTY-NTGKIVELETYVQTN  278 (347)
Q Consensus       221 k~iLv~LL~~G~i~~~lp~~~s~~~-~r~~k~~~~pY~~la~a~-~~g~~~~~~~~~~~~  278 (347)
                      +        .|.+. .-=++-.... ....++...-|.-+++++ +.|++++-.+.+++-
T Consensus       601 ~--------~g~v~-ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        601 R--------SGMVT-QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             h--------cChHH-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            2        12211 0000000000 001112235688888888 568888888887764

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=81.82  E-value=20  Score=29.95  Aligned_cols=60  Identities=17%  Similarity=0.121  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 019008          143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHN  202 (347)
Q Consensus       143 H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~  202 (347)
                      .-.+.+.+...+.|+.|...+..-+-.-+.+.-.-.-.+..|.+++.+++|++|...|+.
T Consensus        51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            344669999999999999999886654332222223355678999999999999999977

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=81.65  E-value=10  Score=35.78  Aligned_cols=132  Identities=8%  Similarity=-0.015  Sum_probs=85.9

Q ss_pred             hhhhHHHHHHHHH-hcCChhhhhchhHHHHHHHHHHHHhHhhh-cccccchHHHHHHHHhhCCCCCc--hhhHHHHHHHH
Q 019008           74 RANTLVPIIARFI-TSCSAEQIRYVPEKFINVCKRYKDQVLLL-EAPIRGVGPMLTAIRKIQSSTEH--LTTLHPEFLQL  149 (347)
Q Consensus        74 ~~~~~~~~~~~fl-~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~-~~~~~~i~~L~~Ai~r~~~~~~~--lT~~H~~ll~l  149 (347)
                      ++.+.+.+..+.. ..-++.+.   +.....    +++..... +.+-.++...+.|+.-+..++..  ......-+..+
T Consensus        92 ~Ai~~~~~A~~~y~~~G~~~~a---A~~~~~----lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l  164 (282)
T PF14938_consen   92 EAIECYEKAIEIYREAGRFSQA---AKCLKE----LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL  164 (282)
T ss_dssp             HHHHHHHHHHHHHHHCT-HHHH---HHHHHH----HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcHHHH---HHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence            4445555555543 33333332   333333    33334444 67888999999999998866532  24444557789


Q ss_pred             HHhcCCchhhhhhhccccccc-C--Cch-hhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchh
Q 019008          150 CLLAKCYKAGLSVLEDDIYEI-N--LPR-DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSIN  212 (347)
Q Consensus       150 ~l~~~~y~~Al~~l~~~i~~i-~--~~~-~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s  212 (347)
                      +...+.|+.|..++++-+... .  ..+ ..-.|+.-.+++++..+|+-.|...|+.... .|+-.-|
T Consensus       165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            999999999999998865432 1  112 3557888999999999999999999999986 6864333

>PRK15331 chaperone protein SicA; Provisional

Probab=81.11  E-value=2.8  Score=36.96  Aligned_cols=62  Identities=13%  Similarity=0.090  Sum_probs=45.9

Q ss_pred             HHHHHHHHhcCCchhhhhhhccccc-ccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCCcc
Q 019008          144 PEFLQLCLLAKCYKAGLSVLEDDIY-EINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMS  209 (347)
Q Consensus       144 ~~ll~l~l~~~~y~~Al~~l~~~i~-~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P~~  209 (347)
                      --|.-.|-..+.|+.|+....-... ..+.|    +-+||.|-.|..+++-+.|..+|+.|+.-|..
T Consensus        75 ~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp----~p~f~agqC~l~l~~~~~A~~~f~~a~~~~~~  137 (165)
T PRK15331         75 MGLAAVCQLKKQFQKACDLYAVAFTLLKNDY----RPVFFTGQCQLLMRKAAKARQCFELVNERTED  137 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccCCC----CccchHHHHHHHhCCHHHHHHHHHHHHhCcch
Confidence            3445566677888888877765432 12212    22799999999999999999999999998874

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=80.96  E-value=16  Score=32.75  Aligned_cols=108  Identities=17%  Similarity=0.075  Sum_probs=71.3

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh--
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK--  191 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k--  191 (347)
                      +.++...|+..+...+.++..+ .......-.+...+...+.|+.|...++.=+-..|.+...-.=+|..|+.+..+.  
T Consensus        17 ~~g~y~~Ai~~f~~l~~~~P~s-~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~   95 (203)
T PF13525_consen   17 QQGDYEEAIKLFEKLIDRYPNS-PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG   95 (203)
T ss_dssp             HCT-HHHHHHHHHHHHHH-TTS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence            4566677888888888886654 3445555677899999999999999998876666654444444677888766543  


Q ss_pred             ---------cHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHH
Q 019008          192 ---------RFRKALELLHNVVT-APMSSINAIAVEAYKKYILV  225 (347)
Q Consensus       192 ---------~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv  225 (347)
                               ...+|...|+..+. .|.+   ...-+|-++..-+
T Consensus        96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S---~y~~~A~~~l~~l  136 (203)
T PF13525_consen   96 ILRSDRDQTSTRKAIEEFEELIKRYPNS---EYAEEAKKRLAEL  136 (203)
T ss_dssp             HH-TT---HHHHHHHHHHHHHHHH-TTS---TTHHHHHHHHHHH
T ss_pred             chhcccChHHHHHHHHHHHHHHHHCcCc---hHHHHHHHHHHHH
Confidence                     34588888998886 8874   3445555555433

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=80.42  E-value=4.3  Score=30.06  Aligned_cols=43  Identities=12%  Similarity=0.050  Sum_probs=33.5

Q ss_pred             HHHHHHHhhhhc--ccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008          301 RNIQRLTQTYLT--LSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       301 ~~I~~L~~~Ys~--IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~  344 (347)
                      ..|..+-+.--.  ++..|||+.+|++ ...+..++.+|.++|.+.
T Consensus         9 ~~IL~~L~~~g~~~~ta~eLa~~lgl~-~~~v~r~L~~L~~~G~V~   53 (68)
T smart00550        9 EKILEFLENSGDETSTALQLAKNLGLP-KKEVNRVLYSLEKKGKVC   53 (68)
T ss_pred             HHHHHHHHHCCCCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence            344444444444  9999999999999 468999999999999864

Helix-turn-helix-containing domain. Also known as Zab.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=80.21  E-value=5.4  Score=39.79  Aligned_cols=70  Identities=13%  Similarity=0.156  Sum_probs=57.3

Q ss_pred             CchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          137 EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       137 ~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ....+.|..+.-++++-+.|+.|+.--++... .++++  .-=+|=.|++++.+++|+.|...|+.|+. .|.+
T Consensus       254 ~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  254 ALKLACHLNLAACYLKLKEYKEAIESCNKVLE-LDPNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-cCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence            44578899999999999999999987777543 23333  33456799999999999999999999998 9987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	347
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-08
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	9e-07
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 9e-12
 Identities = 48/309 (15%), Positives = 97/309 (31%), Gaps = 66/309 (21%)

Query: 7   LVTQIQGLSSNASDI---------TALKDYLKAAEDLLRSESTRLL----SFLDQLDPSK 53
           L  + Q L                 +++D L   ++       +L     S L+ L+P++
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 54  HSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCS--AEQIRYVPEKFINVCKRYKDQ 111
           +   +          S+     +  +P I           + I+      +N   +Y   
Sbjct: 371 YRKMF-------DRLSVFPP--SAHIPTI----LLSLIWFDVIKSDVMVVVNKLHKYS-- 415

Query: 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKA-GLSVLEDDIY-- 168
            L+ + P      + +   +++   E+   LH   +    + K + +  L     D Y  
Sbjct: 416 -LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 169 --------------EINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAI 214
                          + L R  FL        F+ QK     +        A  S +N +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFL-----DFRFLEQK-----IRHDSTAWNASGSILNTL 524

Query: 215 A-VEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVN---TYNTGKIVE 270
             ++ YK YI  +   + +  + +  +     + NL      Y +L+          I E
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEE-NL--ICSKYTDLLRIALMAEDEAIFE 581

Query: 271 LETYVQTNR 279
            E + Q  R
Sbjct: 582 -EAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 6e-08
 Identities = 45/286 (15%), Positives = 87/286 (30%), Gaps = 80/286 (27%)

Query: 102 INV--CKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAG 159
           +N+  C   +  + +L+  +  + P  T+     S+ +         L+  L +K Y+  
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 160 LSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAY 219
           L VL  ++        F L C              K L     + T      + ++    
Sbjct: 247 LLVL-LNVQNAKAWNAFNLSC--------------KIL-----LTTRFKQVTDFLSAATT 286

Query: 220 KKYILVSLIHH----------GQFS-------STLPKYTSS----------AAQRNLKNF 252
                +SL HH                       LP+   +           + R+    
Sbjct: 287 TH---ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 253 SQPYMELVNTYNTGKIVE-----LETYVQTNREKFES------DNN-----LGL------ 290
              + + VN      I+E     LE      R+ F+         +     L L      
Sbjct: 344 WDNW-KHVNCDKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 291 ---VKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMH 333
              V  VV+ ++K ++        T+S+  I   +++    E  +H
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394

 Score = 49.5 bits (117), Expect = 9e-07
 Identities = 37/279 (13%), Positives = 89/279 (31%), Gaps = 11/279 (3%)

Query: 67  YCSITKERANTLVPIIARFITSCSAEQIRYVPEKF-INVCKRYKDQVLLLEAPIRGVGPM 125
                       V +    I     E+  ++ +     +   Y D  L  EA +     +
Sbjct: 67  MFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEA-LALGAQL 125

Query: 126 LTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-----PRDFFLYC 180
           L  ++K+      L  +     +            + L       N           L  
Sbjct: 126 LRELKKLDDKN-LLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184

Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
             G +    ++ F+ A    +       S  +  A+ + K Y+L+  I  GQ        
Sbjct: 185 QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLK-YMLLCKIMLGQSDDVNQLV 243

Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGL-VKQVVSSMY 299
           +   A             +    +   + + +  ++  +++   D  +   +  +  +M 
Sbjct: 244 SGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML 303

Query: 300 KRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMV 338
           ++N+ R+ + Y  + +  +A ++QL    + E  + QM+
Sbjct: 304 EQNLCRIIEPYSRVQVAHVAESIQLPMP-QVEKKLSQMI 341

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Length = 203

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 23/162 (14%), Positives = 54/162 (33%), Gaps = 12/162 (7%)

Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLP 238
           Y YY G   +    F++A E L         S            + V ++     +  L 
Sbjct: 16  YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELL 75

Query: 239 KYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSM 298
           K          K     + E+    + G ++ L   +  +   F       +++++    
Sbjct: 76  K----------KYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIIT 125

Query: 299 YKRNIQRLTQTYLT--LSLQDIANTVQLNSSKEAEMHVLQMV 338
           Y+   +++     T  LSL      ++    ++ ++  +Q +
Sbjct: 126 YRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCI 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	100.0
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	99.92
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	99.91
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	99.79
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	99.67
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.53
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	99.4
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	99.26
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	99.07
1ufm_A	84	COP9 complex subunit 4; helix-turn-helix, structur	98.18
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.34
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	97.21
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.88
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.64
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.61
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.52
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.47
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.43
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	96.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	96.27
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.24
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.21
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.14
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.08
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.07
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.0
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.99
3u4t_A	272	TPR repeat-containing protein; structural genomics	95.94
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	95.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	95.77
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.77
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	95.75
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.75
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.75
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.74
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.73
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.71
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.68
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.66
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.64
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	95.64
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.5
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.46
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	95.42
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.39
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.35
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.33
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	95.32
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.26
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	95.25
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.24
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	95.21
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	95.17
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	95.17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	95.16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.1
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	95.09
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	95.08
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	95.01
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.98
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	94.96
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	94.84
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	94.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	94.81
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	94.79
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	94.75
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.71
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	94.7
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	94.69
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	94.66
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	94.66
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	94.65
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	94.65
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.63
3u4t_A	272	TPR repeat-containing protein; structural genomics	94.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	94.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	94.53
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	94.49
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	94.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	94.43
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.42
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.38
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	94.33
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	94.31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	94.29
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	94.27
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	94.26
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	94.1
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	94.07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	94.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	94.04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	94.03
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	94.01
2gw1_A	514	Mitochondrial precursor proteins import receptor;	94.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	93.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	93.93
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	93.9
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	93.85
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.81
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	93.68
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	93.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	93.56
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	93.49
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	93.22
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	93.21
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	93.16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	93.11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	93.1
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	93.07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	93.05
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	93.04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	92.93
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	92.89
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	92.88
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	92.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	92.85
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	92.84
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	92.8
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	92.74
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	92.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	92.64
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	92.62
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	92.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	92.49
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	92.48
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	92.43
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	92.39
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	92.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	92.24
1pc2_A	152	Mitochondria fission protein; unknown function; NM	92.21
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	92.02
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	91.84
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	91.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	91.7
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	91.69
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	91.47
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	91.42
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	91.32
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	91.18
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	91.04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	90.99
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	90.81
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	90.79
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	90.74
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	90.36
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	90.26
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	90.02
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	90.0
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	89.79
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	89.68
3k9i_A	117	BH0479 protein; putative protein binding protein,	89.63
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	89.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	89.58
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	89.54
4g1t_A	472	Interferon-induced protein with tetratricopeptide	89.32
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	88.79
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	88.56
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	88.28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	88.22
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	87.44
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	86.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	86.5
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	86.29
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	86.22
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	86.08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	85.5
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	85.44
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.58
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	84.57
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	84.32
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	83.5
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	83.42
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	83.2
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	82.77
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	82.72
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	82.58
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	82.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	81.99
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	81.51
4g1t_A	472	Interferon-induced protein with tetratricopeptide	81.31
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	81.05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	80.88
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	80.35

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-48  Score=386.30  Aligned_cols=285  Identities=16%  Similarity=0.144  Sum_probs=199.8

Q ss_pred             cCchhhHHHHHHHHHHhhhcccchhhhhhHHHHHH--HHHhcCChhhhhchhHHHHHHHHHHHHhHhh------------
Q 019008           49 LDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIA--RFITSCSAEQIRYVPEKFINVCKRYKDQVLL------------  114 (347)
Q Consensus        49 ldp~~~sl~~L~vL~~~~~~~~~~~~~~~~~~~~~--~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~------------  114 (347)
                      +-|+...+.+|.++..+++.+.. +++.+|...++  +.+.++|+|+++.+..+.+++...+.+.+..            
T Consensus       130 ~~pE~~~y~~lL~~i~L~d~k~~-~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~  208 (523)
T 4b4t_S          130 VTAEINCFMHLLVQLFLWDSKEL-EQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNI  208 (523)
T ss_dssp             --------------------------------------------------------------------------CHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchh
Confidence            34777878888888777776554 36677887777  7899999999998888866644333333222            


Q ss_pred             -hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC--CchhhHHHHHHHHHHHHhhh
Q 019008          115 -LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN--LPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       115 -~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~--~~~~~l~Y~yy~G~i~~~~k  191 (347)
                       +++.  -+..+|+|++|+|+.++  +++|++++|+|++.+.|++|.++++|..|+..  +++++++|+||.|+|++.++
T Consensus       209 ~ir~~--Ll~~~rta~lr~D~~~q--a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~  284 (523)
T 4b4t_S          209 ILRST--MMKFLKIASLKHDNETK--AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQL  284 (523)
T ss_dssp             HHHTH--HHHHHHHCCSCSSSCHH--HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHH--HHHHHHHHhcccCcchh--HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhc
Confidence             2322  36789999999999654  99999999999999999999999999988754  47788999999999999999


Q ss_pred             cHHHHHHHHHHhhc-CCcc-chhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcchhHHHHHHHHhcCChH
Q 019008          192 RFRKALELLHNVVT-APMS-SINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIV  269 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~~-~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~pY~~la~a~~~g~~~  269 (347)
                      +|.+|.++|++|++ +|.+ ...++.+.++|++|+|.||+ |++| +.+.++    ++.+++.+.||++|++||+.||+.
T Consensus       285 ~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLl-G~iP-~r~lf~----q~~l~~~L~pY~~Lv~Avr~GdL~  358 (523)
T 4b4t_S          285 DYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLM-GDIP-ELSFFH----QSNMQKSLLPYYHLTKAVKLGDLK  358 (523)
T ss_dssp             CHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHH-TCCC-CHHHHT----TTSCHHHHHHHHHHHHHHHHTCHH
T ss_pred             cHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhc-CCCC-ChHHhh----chhHHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999998 8875 46799999999999999885 9999 755543    445566689999999999999999


Q ss_pred             HHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008          270 ELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       270 ~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~  344 (347)
                      .|++++++|++.|.+|||++||+|++++++|++|++++++|+|||++|||.+++++|++|||++|++||+||++-
T Consensus       359 ~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~  433 (523)
T 4b4t_S          359 KFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIE  433 (523)
T ss_dssp             HHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCce
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999863

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=99.92  E-value=2.6e-25  Score=200.56  Aligned_cols=161  Identities=13%  Similarity=0.154  Sum_probs=143.7

Q ss_pred             chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh
Q 019008          173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN  251 (347)
Q Consensus       173 ~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~  251 (347)
                      .++.++|.||.|++++.+++|++|.+.|+.|++ +|. +..+....+.|.+|.|+|+ +|++| +.+-      .+.|+ 
T Consensus        10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~-~~~~~k~~IL~yLIp~~Ll-~G~iP-~~~l------l~~~~-   79 (203)
T 3t5x_A           10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHR-SSQKNKRMILIYLLPVKML-LGHMP-TVEL------LKKYH-   79 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHHH-TTCEE-CHHH------HHHTT-
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCH-hHHHHHHHHHHHHHHHHHH-cCCCC-CHHH------hhhCc-
Confidence            678999999999999999999999999999998 786 4577888889999999987 59988 5422      23343 


Q ss_pred             cchhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHh--hhhcccHHHHHHHcCCC----
Q 019008          252 FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQ--TYLTLSLQDIANTVQLN----  325 (347)
Q Consensus       252 ~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~--~Ys~IsL~dIa~~l~l~----  325 (347)
                       ..||.+|++|+++||+..|++++++|++.|.+||++-++.+++..+.|..+|++..  .|++||+++|+.+++++    
T Consensus        80 -~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~  158 (203)
T 3t5x_A           80 -LMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVED  158 (203)
T ss_dssp             -CGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTT
T ss_pred             -hhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC
Confidence             35899999999999999999999999999999999999999999999999999987  59999999999999764    


Q ss_pred             -ChhhHHHHHHHHhhccccc
Q 019008          326 -SSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       326 -s~~eaE~~v~~mI~~G~~~  344 (347)
                       |.+|+|.+|++||.+|.+-
T Consensus       159 ~~~~evE~ila~lI~~G~Ik  178 (203)
T 3t5x_A          159 VDIDEVQCILANLIYMGHVK  178 (203)
T ss_dssp             CCHHHHHHHHHHHHHHTSSC
T ss_pred             CCHHHHHHHHHHHHHcCceE
Confidence             7899999999999999863

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7.1e-23  Score=204.57  Aligned_cols=196  Identities=14%  Similarity=0.204  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcc----ccc-ccC--CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc--CCccc--
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLED----DIY-EIN--LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT--APMSS--  210 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~----~i~-~i~--~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~--~P~~~--  210 (347)
                      +-+.+++.|.+-+..+.+..++..    ... +.+  +.++..+|+||+|++++.+.+|.+|.+.|..|+.  +|..+  
T Consensus       178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~  257 (455)
T 3t5v_B          178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTN  257 (455)
T ss_dssp             HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccc
Confidence            447788999999999999988864    111 111  2679999999999999999999999999999996  58754  


Q ss_pred             --hhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcchh-HHHHHHHHhcCChHHHHHHHHhcccccccccc
Q 019008          211 --INAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP-YMELVNTYNTGKIVELETYVQTNREKFESDNN  287 (347)
Q Consensus       211 --~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~p-Y~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n  287 (347)
                        ..+....+.|.+|.|+|| +|++| +.     ...++.+.....| |.+|++|++.||+..|++++++|++.|.+||+
T Consensus       258 ~~~~~n~~~ILkyLIpv~LL-lG~~P-~~-----~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gi  330 (455)
T 3t5v_B          258 QAITRNGTRILNYMIPTGLI-LGKMV-KW-----GPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQL  330 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTCCB-CH-----HHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC
T ss_pred             hhhhhHHHHHHHHHHHHHHH-cCCCC-CH-----HHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCC
Confidence              467888899999999988 59998 42     2334433234566 99999999999999999999999999999999


Q ss_pred             -ccHHHHHHHHHHHHHHHHH----Hhhh--hcccHHHHHHHcCC--------------------CChhhHHHHHHHHhhc
Q 019008          288 -LGLVKQVVSSMYKRNIQRL----TQTY--LTLSLQDIANTVQL--------------------NSSKEAEMHVLQMVTF  340 (347)
Q Consensus       288 -~gLV~~~~~~~~r~~I~~L----~~~Y--s~IsL~dIa~~l~l--------------------~s~~eaE~~v~~mI~~  340 (347)
                       +.|+.+++..+.|..+|++    ..+|  ++||+++|+.++++                    .+.+|+|.+|+++|.+
T Consensus       331 ly~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~  410 (455)
T 3t5v_B          331 LIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINL  410 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHc
Confidence             9999999999999999998    7778  89999999999985                    3688999999999999


Q ss_pred             cccc
Q 019008          341 EVNL  344 (347)
Q Consensus       341 G~~~  344 (347)
                      |.+-
T Consensus       411 G~Ik  414 (455)
T 3t5v_B          411 GLLR  414 (455)
T ss_dssp             TSCC
T ss_pred             CCeE
Confidence            9763

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=99.79  E-value=1.5e-17  Score=163.57  Aligned_cols=219  Identities=13%  Similarity=0.158  Sum_probs=178.9

Q ss_pred             chHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhccccc---cc-CCchhhHHHHHHHHHHHH-hhhcHHH
Q 019008          121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EI-NLPRDFFLYCYYGGMIFI-GQKRFRK  195 (347)
Q Consensus       121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~---~i-~~~~~~l~Y~yy~G~i~~-~~k~y~~  195 (347)
                      .+..++.-+.+.|. +..+..+|.+-.+.|...+++..+...+.+.-.   .+ ++|.-...+..++|++++ ..++|++
T Consensus       121 ~i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~  199 (394)
T 3txn_A          121 LGAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKT  199 (394)
T ss_dssp             HHHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHH
Confidence            35556666666664 678899999999999999999999888876422   22 457888999999999999 8999999


Q ss_pred             HHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccC-HHHhhhhhhcchhHHHHHHHHhcCChHHHHHH
Q 019008          196 ALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTS-SAAQRNLKNFSQPYMELVNTYNTGKIVELETY  274 (347)
Q Consensus       196 A~~~l~~ai~~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s-~~~~r~~k~~~~pY~~la~a~~~g~~~~~~~~  274 (347)
                      |...|-.+........+....++.|..+|+.++. +..+ .+....+ +...+.-.+...+|.+|+.||..||..+|.++
T Consensus       200 A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~-~~r~-el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~i  277 (394)
T 3txn_A          200 AFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML-GQSD-DVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAA  277 (394)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TCGG-GHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc-CCHH-HHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHH
Confidence            9988888886555567778888998888888775 5555 5432211 11122111234689999999999999999999


Q ss_pred             HHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          275 VQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       275 ~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      +++++..|..|..+ .-+..+.++++.++++++.++|++|++++||+.+++ +++++|..|.+||.||.+
T Consensus       278 L~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~l-s~~evE~~L~~lI~dg~I  346 (394)
T 3txn_A          278 LKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQL-PMPQVEKKLSQMILDKKF  346 (394)
T ss_dssp             HHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCc-CHHHHHHHHHHHHHCCCe
Confidence            99999999999996 458999999999999999999999999999999999 599999999999999975

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.67  E-value=5.7e-16  Score=154.73  Aligned_cols=202  Identities=10%  Similarity=0.108  Sum_probs=167.8

Q ss_pred             CCchhhHHHHHHHHHHhcCCchhhhhhhccc---ccccC-CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCCccch
Q 019008          136 TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDD---IYEIN-LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSI  211 (347)
Q Consensus       136 ~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~---i~~i~-~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P~~~~  211 (347)
                      ......++..-+|+|+..++|..|..++.+.   .+..+ ++.-.+.|+.|+|++++..++|.+|..+|..+...|....
T Consensus       173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~  252 (445)
T 4b4t_P          173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS  252 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC
Confidence            3557889999999999999999999888873   33333 3566799999999999999999999999999998887544


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh----cchhHHHHHHHHhcCChHHHHHHHHhcccccccccc
Q 019008          212 NAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN----FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNN  287 (347)
Q Consensus       212 s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~----~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n  287 (347)
                      ..-...+.++.+++++++.+..| +.    +....+.++.    ...+|.+|+.+|..+++..|..+.+.+...+..|..
T Consensus       253 d~~~~~~~L~~~v~~~iLa~~~~-~~----~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~  327 (445)
T 4b4t_P          253 DEAKWKPVLSHIVYFLVLSPYGN-LQ----NDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL  327 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSS-TT----HHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCc-hH----HHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence            55555666778888888866555 43    3345554442    346899999999999999999999999888777765


Q ss_pred             c-------cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          288 L-------GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       288 ~-------gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      .       ..+..+..+++.++|+++++.|++|++++||+.++++ ++++|..+.+||.+|.+
T Consensus       328 ~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls~mI~~g~i  389 (445)
T 4b4t_P          328 AFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYISDLVNQGII  389 (445)
T ss_dssp             SCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSS
T ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCE
Confidence            3       4688999999999999999999999999999999997 89999999999999986

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.53  E-value=4.6e-13  Score=128.96  Aligned_cols=229  Identities=9%  Similarity=0.144  Sum_probs=172.5

Q ss_pred             HHhHhhhcccccchHHHHHHHHhhCC--CCCchhhHHHHHHHHHHhcCCchhhhhhhccccc---ccC-CchhhHHHHHH
Q 019008          109 KDQVLLLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EIN-LPRDFFLYCYY  182 (347)
Q Consensus       109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~--~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~---~i~-~~~~~l~Y~yy  182 (347)
                      +......++...++..+..+......  +.......+....++|...++|+.|...+++...   .++ ++.....++.+
T Consensus       142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  221 (434)
T 4b4t_Q          142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM  221 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence            33334455555677777776655432  2345677899999999999999999999987543   222 24567899999


Q ss_pred             HHHHHHhhhcHHHHHHHHHHhhcCCc----cchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhh---hh--hhcc
Q 019008          183 GGMIFIGQKRFRKALELLHNVVTAPM----SSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQR---NL--KNFS  253 (347)
Q Consensus       183 ~G~i~~~~k~y~~A~~~l~~ai~~P~----~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r---~~--k~~~  253 (347)
                      +|.++...++|++|..+|..++..+.    .........+.+..++...+.. ... ..   ......+   .+  ....
T Consensus       222 ~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~  296 (434)
T 4b4t_Q          222 SGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLN-LID-DV---KNILNAKYTKETYQSRGI  296 (434)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT-CHH-HH---HHHHHCSSSSTTCCCHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhcc-chh-HH---HhHHHHHHHHHHhcchhh
Confidence            99999999999999999999986432    1233455666666666655432 111 10   0011000   01  1123


Q ss_pred             hhHHHHHHHHhcCChHHHHHHHHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHH
Q 019008          254 QPYMELVNTYNTGKIVELETYVQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEM  332 (347)
Q Consensus       254 ~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~  332 (347)
                      .+|.+++.+|..+++..+...++.+...+..|... ..+..+...++.++++++.+.|++|++++||+.++++ ++++|.
T Consensus       297 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E~  375 (434)
T 4b4t_Q          297 DAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVEG  375 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHHH
Confidence            57889999999999999999999999999999985 7899999999999999999999999999999999997 899999


Q ss_pred             HHHHHhhcccc
Q 019008          333 HVLQMVTFEVN  343 (347)
Q Consensus       333 ~v~~mI~~G~~  343 (347)
                      .+.+||.+|.+
T Consensus       376 ~l~~lI~~~~i  386 (434)
T 4b4t_Q          376 KLSQMILDKIF  386 (434)
T ss_dssp             HHHHHHHHTSS
T ss_pred             HHHHHHhCCCc
Confidence            99999999875

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.40  E-value=1.1e-11  Score=123.15  Aligned_cols=226  Identities=12%  Similarity=0.002  Sum_probs=166.8

Q ss_pred             hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhccccc---ccCCchhhHHHHHHHHHHHHhhh
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~---~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      .|.-..|+..+.. ++....++.+.-.+....+|+|+..++|..+...+.+.-.   ..+.+....+|..|+|++++..+
T Consensus       144 ~Gd~~~A~~~~~~-~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r  222 (429)
T 4b4t_R          144 IGDKDNAEKTLGK-SLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVR  222 (429)
T ss_dssp             HCCCTTHHHHHHH-HHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTS
T ss_pred             cCCHHHHHHHHHH-HHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            4444456666655 3444556677778888999999999999999999988422   22335566799999999999999


Q ss_pred             cHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHHHhcCCCCCCCC-cccCHHHhhhhh--hcchhHHHHHHHHhcCCh
Q 019008          192 RFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLP-KYTSSAAQRNLK--NFSQPYMELVNTYNTGKI  268 (347)
Q Consensus       192 ~y~~A~~~l~~ai~~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp-~~~s~~~~r~~k--~~~~pY~~la~a~~~g~~  268 (347)
                      +|.+|...|..+...|...-..-.....++.+|++++...... -.. -..++.......  +...++.+++.+|-.++.
T Consensus       223 ~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~-l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~  301 (429)
T 4b4t_R          223 NFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTD-LKSKVIDSPELLSLISTTAALQSISSLTISLYASDY  301 (429)
T ss_dssp             CHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHH-HHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHH-HHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccH
Confidence            9999998888888777644344445567788888877532210 000 012333333322  233567788888877777


Q ss_pred             HHH-HHHHHhccccccccccc-cHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          269 VEL-ETYVQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       269 ~~~-~~~~~~~~~~f~~D~n~-gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      ..+ +...+.+...+..|... .=+..+.++++.+.+..+.+.|++|+++.+|+.+|++ .+++|..+.+||.+|.+
T Consensus       302 ~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~~lI~~g~l  377 (429)
T 4b4t_R          302 ASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLGKFIPNKQL  377 (429)
T ss_dssp             HHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHcCCe
Confidence            765 44566677777777664 5588899999999999999999999999999999997 89999999999999976

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=99.26  E-value=1.8e-11  Score=111.96  Aligned_cols=192  Identities=12%  Similarity=0.064  Sum_probs=141.7

Q ss_pred             HHHHHhcCCchhhhhhhcc--------cccccCC-c--hhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc--chh
Q 019008          147 LQLCLLAKCYKAGLSVLED--------DIYEINL-P--RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS--SIN  212 (347)
Q Consensus       147 l~l~l~~~~y~~Al~~l~~--------~i~~i~~-~--~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~--~~s  212 (347)
                      ++..+..++|+.+.+++.+        +++.... +  ..+.++.|+.|.+.+.+.++.++++-+.+.+. .|..  ..|
T Consensus        14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s   93 (229)
T 4b0z_A           14 LADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPS   93 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCC
Confidence            4566788999999999886        2332111 2  24689999999999999999999877777665 6664  335


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhh-hhh--cchhHHHHHHHHhcCChHHHHHHHHhcccccccccccc
Q 019008          213 AIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRN-LKN--FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLG  289 (347)
Q Consensus       213 ~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~-~k~--~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~g  289 (347)
                      +.+.+..+..+|. +|.+|+++ ++-........+. +++  ..+++.++.+++..||..+|-+..++...    +...-
T Consensus        94 ~~~~e~~~~~LL~-lL~~~~~~-ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~----~~~~~  167 (229)
T 4b0z_A           94 SRMGLVTGLNLLY-LLSENRIA-EFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNF----PEFSY  167 (229)
T ss_dssp             TTHHHHHHHHHHH-HHHTTCHH-HHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCC----GGGHH
T ss_pred             ccHHHHHHHHHHH-HHHcCCch-HHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCcc----chHHH
Confidence            5666655555555 56789988 6422111100010 111  23567889999999999999988876532    22345


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHH---Hhhccccc
Q 019008          290 LVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQ---MVTFEVNL  344 (347)
Q Consensus       290 LV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~---mI~~G~~~  344 (347)
                      ++..++..++...++.+.++|.+||++++++.++++|++|++.++.+   .|+||.+.
T Consensus       168 ~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~dg~i~  225 (229)
T 4b0z_A          168 FMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIY  225 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEEe
Confidence            88999999999999999999999999999999999999999999999   79999754

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.2e-09  Score=107.32  Aligned_cols=195  Identities=12%  Similarity=0.117  Sum_probs=137.3

Q ss_pred             HHHHHHHHhcCCchhhhhhhccccccc---C--CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc--CCccchhHHHH
Q 019008          144 PEFLQLCLLAKCYKAGLSVLEDDIYEI---N--LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT--APMSSINAIAV  216 (347)
Q Consensus       144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i---~--~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~--~P~~~~s~i~v  216 (347)
                      ....+.++..+..+.|..++++.--.+   +  .+.....||+.+|..+...++|.++...+-..+.  .+....+.-..
T Consensus       131 ~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~  210 (393)
T 4b4t_O          131 SEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAER  210 (393)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHH
Confidence            456789999999999999998753211   1  2567899999999999999999999977777774  33445666667


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCccc-CHHHhhhhhh--cchhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHH
Q 019008          217 EAYKKYILVSLIHHGQFSSTLPKYT-SSAAQRNLKN--FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQ  293 (347)
Q Consensus       217 ea~Kk~iLv~LL~~G~i~~~lp~~~-s~~~~r~~k~--~~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~  293 (347)
                      .+.+..++++.|+...++ ++.... .|.+ +.+++  ...+|.+|..+|..||+.+|.+.++.+.+.+..-+..  ...
T Consensus       211 ~~~a~~l~~~all~~~i~-~f~eLL~~p~i-~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~--~~~  286 (393)
T 4b4t_O          211 QQLAYDLSISALLGDKIY-NFGELLHHPIM-ETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQH--ESF  286 (393)
T ss_dssp             HHHHHHHHHHHHHCCSSC-STHHHHHSCCT-TSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHH--HHH
T ss_pred             HHHHHHHHHHHHcCCCCC-ChHHHhCChHH-HHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhh--HHH
Confidence            777888888888876776 653211 1111 11222  2357999999999999999998877665443211110  111


Q ss_pred             HHHHHHHHHHHHHH--hhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          294 VVSSMYKRNIQRLT--QTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       294 ~~~~~~r~~I~~L~--~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      +++.++-..+..+.  +.|.+||+++|++.++++ ++|+|.+|.+||.+|.+
T Consensus       287 l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli~aI~~glI  337 (393)
T 4b4t_O          287 LRQKICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVMRAISLGLL  337 (393)
T ss_dssp             HHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHHHHHHcCCE
Confidence            22222222333333  457899999999999996 89999999999999975

>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47

Probab=98.18  E-value=1.7e-06  Score=66.54  Aligned_cols=48  Identities=15%  Similarity=0.245  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          295 VSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       295 ~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      ...++.++|+.+++.|++|+++.+|+.++++ ++++|.++.+||.+|.+
T Consensus        13 ~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~mI~~~~l   60 (84)
T 1ufm_A           13 DRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRM   60 (84)
T ss_dssp             CHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHHHHhCCcE
Confidence            3567888899999999999999999999998 99999999999999986

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.34  E-value=0.0023  Score=49.86  Aligned_cols=95  Identities=11%  Similarity=-0.065  Sum_probs=73.3

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..+..++.. +|+.......+..+...+...+.|+.|...+++-+-..|........+|..|.++..+++|
T Consensus        14 ~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~   92 (129)
T 2xev_A           14 KNGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN   92 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred             HhCCHHHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH
Confidence            456666788888887766 4443323356677889999999999999999986654443434467788899999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|.+
T Consensus        93 ~~A~~~~~~~~~~~p~~  109 (129)
T 2xev_A           93 TEAQQTLQQVATQYPGS  109 (129)
T ss_dssp             HHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHHCCCC
Confidence            999999999997 7864

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}

Probab=97.21  E-value=0.00074  Score=58.46  Aligned_cols=81  Identities=10%  Similarity=0.192  Sum_probs=68.5

Q ss_pred             hhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHH
Q 019008          254 QPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMH  333 (347)
Q Consensus       254 ~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~  333 (347)
                      .+|.++..+|..|++..+++..+         ++-+|...+.+.++.-.+..|...-..||.++|++.+++++.+|+|.+
T Consensus        60 ~~~~~LL~iF~~G~~~~y~~~~~---------~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~l  130 (169)
T 3chm_A           60 SVYLDLLRLFAHGTWGDYKCNAT---------RLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDF  130 (169)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHGG---------GSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHH
T ss_pred             hHHHHHHHHHhcCCHHHHHHhHH---------hCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHH
Confidence            57999999999999999987432         223566777777777778888777899999999999999999999999


Q ss_pred             HH-HHhhcccc
Q 019008          334 VL-QMVTFEVN  343 (347)
Q Consensus       334 v~-~mI~~G~~  343 (347)
                      |. ++|..|.+
T Consensus       131 vI~~ai~~gLI  141 (169)
T 3chm_A          131 LINECMYAGIV  141 (169)
T ss_dssp             HHHTHHHHTSE
T ss_pred             HHHHHHHhCCe
Confidence            99 99998865

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.04  E-value=0.01  Score=52.55  Aligned_cols=95  Identities=16%  Similarity=0.042  Sum_probs=76.4

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh----
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----  189 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~----  189 (347)
                      ..++...++..+..++.. +|........+-.+...+...+.|+.|...+++-+-..|.+.....-+|..|.++..    
T Consensus        27 ~~g~~~~A~~~~~~~l~~-~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~  105 (261)
T 3qky_A           27 NQGKYDRAIEYFKAVFTY-GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP  105 (261)
T ss_dssp             HTTCHHHHHHHHHHHGGG-CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC
T ss_pred             HhCCHHHHHHHHHHHHHh-CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc
Confidence            456666788888887766 454444456778888999999999999999998766545455566778899999999    


Q ss_pred             ----hhcHHHHHHHHHHhhc-CCcc
Q 019008          190 ----QKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       190 ----~k~y~~A~~~l~~ai~-~P~~  209 (347)
                          +++|++|...|+.++. .|.+
T Consensus       106 ~~~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A          106 YELDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccccchhHHHHHHHHHHHHHHCcCc
Confidence                9999999999999997 8875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.88  E-value=0.015  Score=48.51  Aligned_cols=128  Identities=7%  Similarity=-0.045  Sum_probs=90.1

Q ss_pred             hhhhHHHHHHHHHhcCC--hhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHH
Q 019008           74 RANTLVPIIARFITSCS--AEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCL  151 (347)
Q Consensus        74 ~~~~~~~~~~~fl~~~~--~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l  151 (347)
                      +.+.+-..+.+|+....  .+-+..-|+....+.. .+..+...+....|+..++.|+.. +|..   ...|..+-..+.
T Consensus         7 ~~~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~-lg~~~~~~g~~~eA~~~~~~al~~-~P~~---~~~~~~lg~~~~   81 (151)
T 3gyz_A            7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIYS-YAYDFYNKGRIEEAEVFFRFLCIY-DFYN---VDYIMGLAAIYQ   81 (151)
T ss_dssp             --CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHH
Confidence            45566777888886544  2222344544333332 333445667777889999888765 6643   446778889999


Q ss_pred             hcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          152 LAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       152 ~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..+.|+.|+..+++.+---|   +....+|..|.++..+++|++|..+|+.++. .|..
T Consensus        82 ~~g~~~~Ai~~~~~al~l~P---~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           82 IKEQFQQAADLYAVAFALGK---NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHSS---SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHccHHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            99999999999998764222   2245678899999999999999999999998 7764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.64  E-value=0.02  Score=46.97  Aligned_cols=92  Identities=3%  Similarity=-0.172  Sum_probs=70.7

Q ss_pred             hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~  190 (347)
                      .+...+....++..++.++.. +|..   ...+..+-..+...+.|+.|+..+++.+---|   +....+|+.|.++..+
T Consensus        30 ~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           30 NQYQSGXYEDAHXVFQALCVL-DHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI---XEPRFPFHAAECLLQX  102 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHHHHHHHHHHT
T ss_pred             HHHHcCChHHHHHHHHHHHHc-Cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHc
Confidence            334556666788888887755 6643   44667788899999999999999998654212   2345678889999999


Q ss_pred             hcHHHHHHHHHHhhc-CCcc
Q 019008          191 KRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       191 k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ++|++|..+|+.++. .|.+
T Consensus       103 g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A          103 GELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             TCHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHCcCC
Confidence            999999999999997 7764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.61  E-value=0.018  Score=46.34  Aligned_cols=91  Identities=4%  Similarity=-0.182  Sum_probs=70.1

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      +...++...++..++.++.. +|..   ...+..+-..+...+.|+.|...+++.+---|   +....+|..|.++..++
T Consensus        28 ~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g  100 (142)
T 2xcb_A           28 QYQAGKWDDAQKIFQALCML-DHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMDI---NEPRFPFHAAECHLQLG  100 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTT
T ss_pred             HHHHccHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHcC
Confidence            34556666788888887764 6643   34667788899999999999999998764222   22456788899999999


Q ss_pred             cHHHHHHHHHHhhc-CCcc
Q 019008          192 RFRKALELLHNVVT-APMS  209 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~~  209 (347)
                      +|++|..+|+.++. .|..
T Consensus       101 ~~~~A~~~~~~al~~~p~~  119 (142)
T 2xcb_A          101 DLDGAESGFYSARALAAAQ  119 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCCC
Confidence            99999999999997 7754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.52  E-value=0.017  Score=46.03  Aligned_cols=91  Identities=9%  Similarity=0.081  Sum_probs=72.6

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      ....++...|+..+..|+.. +|..   ...|..+-..+...+.|+.|+..+++.+- ++  .+....++..|.++..++
T Consensus        23 ~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~--p~~~~a~~~lg~~~~~~~   95 (126)
T 4gco_A           23 YFKKGDYPTAMRHYNEAVKR-DPEN---AILYSNRAACLTKLMEFQRALDDCDTCIR-LD--SKFIKGYIRKAACLVAMR   95 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHH-hh--hhhhHHHHHHHHHHHHCC
Confidence            33456666788888888755 6643   45778888999999999999999998764 22  234567888999999999


Q ss_pred             cHHHHHHHHHHhhc-CCcc
Q 019008          192 RFRKALELLHNVVT-APMS  209 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~~  209 (347)
                      +|++|.++|+.++. -|.+
T Consensus        96 ~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           96 EWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHHCcCC
Confidence            99999999999997 8875

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.47  E-value=0.046  Score=49.71  Aligned_cols=174  Identities=9%  Similarity=-0.027  Sum_probs=110.8

Q ss_pred             HHhHhhhcccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhc-CCchhhhhhhcccccccC---CchhhHHHHHH
Q 019008          109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLA-KCYKAGLSVLEDDIYEIN---LPRDFFLYCYY  182 (347)
Q Consensus       109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~-~~y~~Al~~l~~~i~~i~---~~~~~l~Y~yy  182 (347)
                      +......+.+..++..+..|+.-....+.  .....+..+-..+... +.|+.|+..+.+.+--.+   ........+.-
T Consensus        84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  163 (292)
T 1qqe_A           84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK  163 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            33344566777889999998877654332  1234566777888886 999999999998654222   12223455667


Q ss_pred             HHHHHHhhhcHHHHHHHHHHhhc-CCccchhH-HHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh--------hc
Q 019008          183 GGMIFIGQKRFRKALELLHNVVT-APMSSINA-IAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK--------NF  252 (347)
Q Consensus       183 ~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~-i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k--------~~  252 (347)
                      .|.++..+++|++|.++|+.++. .|...... ...+++-...++. +..|+.. .-    -....+..+        ..
T Consensus       164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~-~A----~~~~~~al~l~p~~~~~~~  237 (292)
T 1qqe_A          164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ-LAATDAV-AA----ARTLQEGQSEDPNFADSRE  237 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH-HHTTCHH-HH----HHHHHGGGCC---------
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH-HHcCCHH-HH----HHHHHHHHhhCCCCCCcHH
Confidence            79999999999999999999997 66543211 1223444444443 3345543 10    001111110        01


Q ss_pred             chhHHHHHHHHhcCChHHHHHHHHhccccccccccc
Q 019008          253 SQPYMELVNTYNTGKIVELETYVQTNREKFESDNNL  288 (347)
Q Consensus       253 ~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~  288 (347)
                      ..-+..+..++..||.+++.+.++.+...-.-|...
T Consensus       238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence            123566888999999999999999998887777665

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.43  E-value=0.059  Score=44.07  Aligned_cols=92  Identities=5%  Similarity=-0.089  Sum_probs=72.6

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...+....++..++.|+.. +|..   ...+..+...+...+.|+.|+..+++.+---|   +....++..|.++..+++
T Consensus        22 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~   94 (164)
T 3sz7_A           22 MARKEYSKAIDLYTQALSI-APAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDP---KYSKAWSRLGLARFDMAD   94 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHHh-CCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccC
Confidence            3456666788888887765 5543   45778889999999999999999998754222   246778889999999999


Q ss_pred             HHHHHHHHHHhhc-CCccch
Q 019008          193 FRKALELLHNVVT-APMSSI  211 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~~~  211 (347)
                      |++|..+|+.++. .|.+..
T Consensus        95 ~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           95 YKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHHhCCCchH
Confidence            9999999999997 887543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=96.32  E-value=0.44  Score=40.87  Aligned_cols=208  Identities=8%  Similarity=-0.018  Sum_probs=117.9

Q ss_pred             hcCchhhHHHHHHHHHHhhhcccchhhhhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHH
Q 019008           48 QLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLT  127 (347)
Q Consensus        48 ~ldp~~~sl~~L~vL~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~  127 (347)
                      ..||....-.+..+-......... +.+...+..+...    +|..    +..+..++.    .....++...++..+..
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~----~~~~----~~~~~~la~----~~~~~~~~~~A~~~~~~   96 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNT-EQAKVPLRKALEI----DPSS----ADAHAALAV----VFQTEMEPKLADEEYRK   96 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCT-GGGHHHHHHHHHH----CTTC----HHHHHHHHH----HHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhc----CCCh----HHHHHHHHH----HHHHcCCHHHHHHHHHH
Confidence            457765444444433333332222 2444455554433    2222    223333333    33345667778888888


Q ss_pred             HHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-C
Q 019008          128 AIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-A  206 (347)
Q Consensus       128 Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~  206 (347)
                      ++.. +|..   ...+..+...+...+.++.|...+++.+- .+........++..|.++..+++|++|..+|+.++. .
T Consensus        97 a~~~-~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (252)
T 2ho1_A           97 ALAS-DSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN  171 (252)
T ss_dssp             HHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHH-CcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            8765 4432   45677888999999999999999998765 222334566777889999999999999999999997 7


Q ss_pred             CccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---hcchhHHHHHHHH-hcCChHHHHHHHHhccccc
Q 019008          207 PMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELVNTY-NTGKIVELETYVQTNREKF  282 (347)
Q Consensus       207 P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---~~~~pY~~la~a~-~~g~~~~~~~~~~~~~~~f  282 (347)
                      |...      +++..+..+. ...|+.. .    .-....+..+   .....|..++..+ ..|+.++-.+.+++..+.+
T Consensus       172 ~~~~------~~~~~la~~~-~~~g~~~-~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          172 RNQP------SVALEMADLL-YKEREYV-P----ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             SCCH------HHHHHHHHHH-HHTTCHH-H----HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cccH------HHHHHHHHHH-HHcCCHH-H----HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            7541      1222222221 2234433 1    0111111111   1223455666655 4677777766666655554


Q ss_pred             ccc
Q 019008          283 ESD  285 (347)
Q Consensus       283 ~~D  285 (347)
                      ..+
T Consensus       240 p~~  242 (252)
T 2ho1_A          240 PGS  242 (252)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=96.27  E-value=0.025  Score=43.14  Aligned_cols=90  Identities=9%  Similarity=-0.002  Sum_probs=69.0

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC----chhhHHHHHHHHHHHHh
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~----~~~~l~Y~yy~G~i~~~  189 (347)
                      ..+....++..+..++.. +|..   ...+..+...+...+.|+.|...+.+.+-..+.    .......++..|.++..
T Consensus        16 ~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~   91 (131)
T 1elr_A           16 KKKDFDTALKHYDKAKEL-DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK   91 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhc-CCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence            456666788888888766 4432   456778889999999999999999886542221    11226778889999999


Q ss_pred             hhcHHHHHHHHHHhhc-CC
Q 019008          190 QKRFRKALELLHNVVT-AP  207 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~-~P  207 (347)
                      +++|++|..+|+.++. .|
T Consensus        92 ~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           92 EEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHCC
T ss_pred             hccHHHHHHHHHHHHHhCC
Confidence            9999999999999998 55

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.24  E-value=0.02  Score=45.23  Aligned_cols=89  Identities=9%  Similarity=-0.083  Sum_probs=68.5

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...++...++..++.|+.. +|+.   ...+..+-..+...+.++.|+..+++.+---|   +....++..|.++..+++
T Consensus        28 ~~~g~~~~A~~~~~~al~~-~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           28 LKLANLAEAALAFEAVCQK-EPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCC
Confidence            3456667788888888775 5543   45677888999999999999999988654212   235577899999999999


Q ss_pred             HHHHHHHHHHhhc-CCc
Q 019008          193 FRKALELLHNVVT-APM  208 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~  208 (347)
                      |++|..+|+.++. .|.
T Consensus       101 ~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A          101 ANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHhCcC
Confidence            9999999999997 665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.21  E-value=0.016  Score=46.16  Aligned_cols=96  Identities=11%  Similarity=0.000  Sum_probs=72.1

Q ss_pred             HHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC----CchhhHHHHHHHH
Q 019008          109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN----LPRDFFLYCYYGG  184 (347)
Q Consensus       109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~----~~~~~l~Y~yy~G  184 (347)
                      +......++...|+.....|+. ++|+.   ...+..+-..+...+.|+.|+..+++.+---|    .......-++-.|
T Consensus        15 G~~~~~~~~~~~A~~~y~~Al~-~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           15 GNAAYKQKDFEKAHVHYDKAIE-LDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH-hCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            3333455666678888888875 46653   45678889999999999999999988653111    1233455677889


Q ss_pred             HHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          185 MIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       185 ~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      .++..+++|++|.++|+.++. .|.
T Consensus        91 ~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           91 NAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            999999999999999999997 554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.037  Score=43.01  Aligned_cols=87  Identities=13%  Similarity=0.036  Sum_probs=69.2

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...+....++..+..|+.. +|+.   ...+..+...+...+.|+.|+..+++.+---|   +....++..|.++..+++
T Consensus        15 ~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~   87 (126)
T 3upv_A           15 FTKSDWPNAVKAYTEMIKR-APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---NFVRAYIRKATAQIAVKE   87 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred             HHhcCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHHhC
Confidence            3456666788888888765 5543   45778889999999999999999998764222   235678889999999999


Q ss_pred             HHHHHHHHHHhhc-C
Q 019008          193 FRKALELLHNVVT-A  206 (347)
Q Consensus       193 y~~A~~~l~~ai~-~  206 (347)
                      |++|..+|+.++. .
T Consensus        88 ~~~A~~~~~~al~~~  102 (126)
T 3upv_A           88 YASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            9999999999997 6

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.08  E-value=0.017  Score=47.39  Aligned_cols=67  Identities=12%  Similarity=0.002  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..+|..+...++..+.|+.|+...++.+-- +  .+....+|..|.++..+++|++|..+|+.++. .|.+
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~-~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~  130 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR-E--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA  130 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-S--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-C--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence            567888899999999999999999887642 2  13456788899999999999999999999998 8875

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.07  E-value=0.036  Score=43.48  Aligned_cols=93  Identities=13%  Similarity=0.051  Sum_probs=70.8

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...++...++..+..++.. +|+.......+..+...+...+.|+.|...+++.+-.-|   +....++..|.++..+++
T Consensus        39 ~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~  114 (148)
T 2dba_A           39 FKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG---GDVKALYRRSQALEKLGR  114 (148)
T ss_dssp             HTTTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS---CCHHHHHHHHHHHHHHTC
T ss_pred             HHhCCHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc---cCHHHHHHHHHHHHHcCC
Confidence            3455666678888777654 554323456777888999999999999999988654322   236677889999999999


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|..+|+.++. .|..
T Consensus       115 ~~~A~~~~~~al~~~p~~  132 (148)
T 2dba_A          115 LDQAVLDLQRCVSLEPKN  132 (148)
T ss_dssp             HHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHcCCCc
Confidence            9999999999997 7764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.07  E-value=0.0093  Score=46.37  Aligned_cols=88  Identities=14%  Similarity=0.132  Sum_probs=67.2

Q ss_pred             cccccchHHHHHHHHhh--CCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          116 EAPIRGVGPMLTAIRKI--QSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       116 ~~~~~~i~~L~~Ai~r~--~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      +....++..++.|+..-  +|   .-...+..+-..+...+.|+.|+..+++.+-.-|   +....++.-|.++..+++|
T Consensus         4 g~~~~A~~~~~~al~~~~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~   77 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGK---DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP---NHQALRVFYAMVLYNLGRY   77 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCH
T ss_pred             CcHHHHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHcCCH
Confidence            34556788888877642  23   2356778888999999999999999998764323   2256777889999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|..
T Consensus        78 ~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            999999999997 6764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.06  E-value=0.068  Score=39.73  Aligned_cols=89  Identities=9%  Similarity=-0.095  Sum_probs=68.8

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..+..++.. +|..   ...+..+...+...+.|+.|...+.+.+-.-|   +....++..|.++..+++|
T Consensus        16 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~   88 (118)
T 1elw_A           16 SVGNIDDALQCYSEAIKL-DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---DWGKGYSRKAAALEFLNRF   88 (118)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred             HcccHHHHHHHHHHHHHH-CCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHHhhH
Confidence            456666678888887765 4432   44667788899999999999999988654322   2356678889999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|..
T Consensus        89 ~~A~~~~~~~~~~~~~~  105 (118)
T 1elw_A           89 EEAKRTYEEGLKHEANN  105 (118)
T ss_dssp             HHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            999999999997 6764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.00  E-value=0.3  Score=43.79  Aligned_cols=97  Identities=4%  Similarity=-0.056  Sum_probs=74.5

Q ss_pred             HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008          110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~  189 (347)
                      ......++...++..+..++...+.++......+..+...+...+.|+.|...+++.+-.-|   +....++..|.++..
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~  318 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP---DNVNALKDRAEAYLI  318 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHH
Confidence            33455677777899998888765443333334566788999999999999999998654322   235678888999999


Q ss_pred             hhcHHHHHHHHHHhhc-CCcc
Q 019008          190 QKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      +++|++|.++|+.++. .|.+
T Consensus       319 ~g~~~~A~~~~~~a~~~~p~~  339 (359)
T 3ieg_A          319 EEMYDEAIQDYEAAQEHNEND  339 (359)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTC
T ss_pred             cCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999997 7864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.99  E-value=0.41  Score=42.08  Aligned_cols=112  Identities=11%  Similarity=-0.041  Sum_probs=79.7

Q ss_pred             HhhhcccccchHHHHHHHHhhCCC-CCchhhHHHHHHHHHHhcCCchhhhhhhcccccc---cCCchhhHHHHHHHHHHH
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMIF  187 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~-~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i~~~~~~l~Y~yy~G~i~  187 (347)
                      ....+....++..++.|+.. +|. +.....++..+...+...+.|+.|...+++.+--   .+.+......++..|.++
T Consensus        15 ~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~   93 (338)
T 3ro2_A           15 LCKSGDCRAGVSFFEAAVQV-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL   93 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence            34556677788888888886 443 2333567788889999999999999998875432   122445577788899999


Q ss_pred             HhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHH
Q 019008          188 IGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYIL  224 (347)
Q Consensus       188 ~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iL  224 (347)
                      ..+++|++|.++|+.++. .|...-......++..+-.
T Consensus        94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  131 (338)
T 3ro2_A           94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN  131 (338)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            999999999999999997 5553333333444443333

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=95.94  E-value=0.18  Score=43.85  Aligned_cols=150  Identities=10%  Similarity=0.015  Sum_probs=90.6

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC-chhhHHHHHHHHHHHHhhh
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~-~~~~l~Y~yy~G~i~~~~k  191 (347)
                      ...++...++..++.++.. +|...   ..+..+...+...+.|+.|+..+++.+- .+. +.....-++..|.++..++
T Consensus        14 ~~~~~~~~A~~~~~~~l~~-~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~   88 (272)
T 3u4t_A           14 FKNNNYAEAIEVFNKLEAK-KYNSP---YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKG   88 (272)
T ss_dssp             HTTTCHHHHHHHHHHHHHT-TCCCS---TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTT
T ss_pred             HHhcCHHHHHHHHHHHHHh-CCCcH---HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcc
Confidence            3455566678888887755 44322   2456677788899999999998888665 332 3333566788899999999


Q ss_pred             cHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---hcchhHHHHH-HHHhcC
Q 019008          192 RFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELV-NTYNTG  266 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---~~~~pY~~la-~a~~~g  266 (347)
                      +|++|..+|+.++. .|....      ++..+-.+. ...|+.. .    .-....+..+   .....|..++ ..+..+
T Consensus        89 ~~~~A~~~~~~a~~~~~~~~~------~~~~l~~~~-~~~~~~~-~----A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  156 (272)
T 3u4t_A           89 QDSLAIQQYQAAVDRDTTRLD------MYGQIGSYF-YNKGNFP-L----AIQYMEKQIRPTTTDPKVFYELGQAYYYNK  156 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTH------HHHHHHHHH-HHTTCHH-H----HHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhcCcccHH------HHHHHHHHH-HHccCHH-H----HHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence            99999999999997 676431      222222222 2334433 1    0011111111   1235677888 777777


Q ss_pred             ChHHHHHHHHhcc
Q 019008          267 KIVELETYVQTNR  279 (347)
Q Consensus       267 ~~~~~~~~~~~~~  279 (347)
                      +.++-.+.+++.-
T Consensus       157 ~~~~A~~~~~~a~  169 (272)
T 3u4t_A          157 EYVKADSSFVKVL  169 (272)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6555554444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=95.82  E-value=0.14  Score=40.00  Aligned_cols=95  Identities=6%  Similarity=-0.047  Sum_probs=71.0

Q ss_pred             hHhhhcccccchHHHHHHHHhhCCCC--CchhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHH
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGM  185 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~--~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~  185 (347)
                      .....+....++..+..|+......+  ......+..+...+...+.|+.|...+.+.+-..   ..+......++..|.
T Consensus        58 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  137 (164)
T 3ro3_A           58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN  137 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHH
Confidence            33455666678888888877654322  2234566778899999999999999998865322   223455677888999


Q ss_pred             HHHhhhcHHHHHHHHHHhhc
Q 019008          186 IFIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       186 i~~~~k~y~~A~~~l~~ai~  205 (347)
                      ++..+++|++|.++|+.++.
T Consensus       138 ~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          138 AYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHH
Confidence            99999999999999999986

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=95.77  E-value=0.2  Score=41.41  Aligned_cols=127  Identities=7%  Similarity=-0.116  Sum_probs=85.6

Q ss_pred             hhhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCC-C--chhhHHHHHHHHH
Q 019008           74 RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSST-E--HLTTLHPEFLQLC  150 (347)
Q Consensus        74 ~~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~-~--~lT~~H~~ll~l~  150 (347)
                      ++...+.+........+...  ..+..+..    ++......+....++..+..|+......+ .  .....+..+...+
T Consensus        44 ~A~~~~~~al~~~~~~~~~~--~~~~~~~~----l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  117 (203)
T 3gw4_A           44 EARASFQALQQQAQKSGDHT--AEHRALHQ----VGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA  117 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCCHH--HHHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcH--HHHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence            55566677766665443211  11122222    33333456667778888888887755333 2  3566678888999


Q ss_pred             HhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcC
Q 019008          151 LLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA  206 (347)
Q Consensus       151 l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~  206 (347)
                      ...+.|+.|...+++.+-..   +.+......++..|.++..+++|++|.++|+.++..
T Consensus       118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            99999999999998865321   223344555788899999999999999999999973

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.77  E-value=0.12  Score=47.34  Aligned_cols=155  Identities=10%  Similarity=0.031  Sum_probs=95.6

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhcCCchhhhhhhcccccccC---CchhhHHHHHHHHHH
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMI  186 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~---~~~~~l~Y~yy~G~i  186 (347)
                      ....+.+..++..++.|+.-+...+.  .....+..+-..+.. +.|+.|+..+.+.+--.+   ........++-.|.+
T Consensus        86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~  164 (307)
T 2ifu_A           86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL  164 (307)
T ss_dssp             HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence            34556777899999999887654432  223455666677777 999999999988653222   123345667788999


Q ss_pred             HHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhh-----h--hcchhHHH
Q 019008          187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNL-----K--NFSQPYME  258 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~-----k--~~~~pY~~  258 (347)
                      +..+++|++|..+|+.++. .|..........++-...++.+ ..|+.. .-    -....+..     .  ....-...
T Consensus       165 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~-~A----~~~~~~al~~p~~~~~~e~~~l~~  238 (307)
T 2ifu_A          165 LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL-HRADYV-AA----QKCVRESYSIPGFSGSEDCAALED  238 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHH-HH----HHHHHHHTTSTTSTTSHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH-HcCCHH-HH----HHHHHHHhCCCCCCCCHHHHHHHH
Confidence            9999999999999999997 5654322222333434434332 234432 10    00011100     0  01123556


Q ss_pred             HHHHHhcCChHHHHH
Q 019008          259 LVNTYNTGKIVELET  273 (347)
Q Consensus       259 la~a~~~g~~~~~~~  273 (347)
                      ++.++..||.+.+..
T Consensus       239 l~~~~~~~d~~~~~~  253 (307)
T 2ifu_A          239 LLQAYDEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHhcCHHHHHH
Confidence            778888899888887

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=95.75  E-value=0.54  Score=43.06  Aligned_cols=98  Identities=11%  Similarity=-0.020  Sum_probs=74.7

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccc---cCCchhhHHHHHHHHHHHH
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMIFI  188 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i~~~~~~l~Y~yy~G~i~~  188 (347)
                      +...+....++..+..++.....++..+..++..+...+...+.|+.|...+++.+--   ..........++..|.++.
T Consensus        19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            3455667778888888887633333334567788889999999999999998875432   1224456778889999999


Q ss_pred             hhhcHHHHHHHHHHhhc-CCcc
Q 019008          189 GQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       189 ~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+++|++|..+|+.++. .|..
T Consensus        99 ~~g~~~~A~~~~~~al~~~~~~  120 (406)
T 3sf4_A           99 VLGNFDEAIVCCQRHLDISREL  120 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999997 6653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.75  E-value=0.077  Score=44.80  Aligned_cols=93  Identities=11%  Similarity=-0.036  Sum_probs=70.4

Q ss_pred             hhcccccchHHHHHHHHhhCCCCC-ch-----------hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTE-HL-----------TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCY  181 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~-~l-----------T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~y  181 (347)
                      ..+....|+..+..|+.....++. ..           ...+..+...+...+.|+.|+..+++.+-.-|   +....+|
T Consensus        50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~  126 (198)
T 2fbn_A           50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK---NNVKALY  126 (198)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---ccHHHHH
Confidence            445566677888887765443221 01           25677888999999999999999998654322   3456788


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          182 YGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       182 y~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..|.++..+++|++|..+|+.++. .|..
T Consensus       127 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A          127 KLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999997 7865

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.75  E-value=0.033  Score=42.70  Aligned_cols=82  Identities=11%  Similarity=0.012  Sum_probs=63.0

Q ss_pred             chHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHH
Q 019008          121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL  200 (347)
Q Consensus       121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l  200 (347)
                      ++..++.++.. +|..   ...+..+...+...+.|+.|...+.+.+-.-|   +....++.-|.++..+++|++|..+|
T Consensus         4 a~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~   76 (115)
T 2kat_A            4 ITERLEAMLAQ-GTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDP---TYSVAWKWLGKTLQGQGDRAGARQAW   76 (115)
T ss_dssp             HHHHHHHHHTT-TCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            45556665543 5543   45678888999999999999999998664222   33556788899999999999999999


Q ss_pred             HHhhc-CCcc
Q 019008          201 HNVVT-APMS  209 (347)
Q Consensus       201 ~~ai~-~P~~  209 (347)
                      +.++. .|..
T Consensus        77 ~~al~~~~~~   86 (115)
T 2kat_A           77 ESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhcccc
Confidence            99997 6653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.74  E-value=0.083  Score=39.92  Aligned_cols=89  Identities=11%  Similarity=-0.009  Sum_probs=68.7

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....++..+..++.. +|..   ...+..+...+...+.|+.|...+++.+-.-|   +....++..|.++..+++|
T Consensus        24 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   96 (131)
T 2vyi_A           24 KVENFEAAVHFYGKAIEL-NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDP---AYSKAYGRMGLALSSLNKH   96 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred             HccCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc---cCHHHHHHHHHHHHHhCCH
Confidence            455566678888887765 4432   44667888999999999999999988654322   2255678889999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|..
T Consensus        97 ~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           97 VEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhcCccc
Confidence            999999999997 7764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.73  E-value=0.065  Score=41.72  Aligned_cols=88  Identities=9%  Similarity=-0.020  Sum_probs=69.3

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....++..+..++.. +|+.   ...+..+...+...+.|+.|...+.+.+---|   +....++..|.++..+++|
T Consensus        21 ~~~~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~   93 (137)
T 3q49_B           21 VGRKYPEAAACYGRAITR-NPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDG---QSVKAHFFLGQCQLEMESY   93 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred             HhCcHHHHHHHHHHHHhh-CcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHHHhhH
Confidence            455566678888877765 5532   45778889999999999999999988654222   2456788899999999999


Q ss_pred             HHHHHHHHHhhc-CCc
Q 019008          194 RKALELLHNVVT-APM  208 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~  208 (347)
                      ++|..+|+.++. .|.
T Consensus        94 ~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           94 DEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHChh
Confidence            999999999997 675

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.71  E-value=0.053  Score=41.52  Aligned_cols=90  Identities=11%  Similarity=0.055  Sum_probs=69.6

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...+....++..+..++.. +|..   ...+..+...+...+.|+.|+..+++.+-.-+   +....++..|.++..+++
T Consensus        27 ~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~   99 (133)
T 2lni_A           27 FQKGDYPQAMKHYTEAIKR-NPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEP---TFIKGYTRKAAALEAMKD   99 (133)
T ss_dssp             HHTTCSHHHHHHHHHHHTT-CTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHHhh
Confidence            3456666788888887765 4432   45667888899999999999999988654322   235677888999999999


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|..+|+.++. .|..
T Consensus       100 ~~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A          100 YTKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             HHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHhCCCc
Confidence            9999999999997 7764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.68  E-value=1.3  Score=41.00  Aligned_cols=92  Identities=12%  Similarity=-0.052  Sum_probs=58.5

Q ss_pred             hhcccccchHHHHHHHHhhCCCCC---chhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTE---HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIF  187 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~---~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~  187 (347)
                      ..+++..++..+..|+.-+...+.   .....+..+-..+...+.|+.|++.+.+.+--.   +.+......++..|.+|
T Consensus       153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  232 (378)
T 3q15_A          153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY  232 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            455566677777777766554322   234455666777777777777777777654311   12334455666677777


Q ss_pred             HhhhcHHHHHHHHHHhhc
Q 019008          188 IGQKRFRKALELLHNVVT  205 (347)
Q Consensus       188 ~~~k~y~~A~~~l~~ai~  205 (347)
                      ..+++|++|.++|+.++.
T Consensus       233 ~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          233 DRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            777777777777777775

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.66  E-value=0.24  Score=46.17  Aligned_cols=166  Identities=10%  Similarity=0.049  Sum_probs=103.1

Q ss_pred             hhhcccccchHHHHHHHHhhCCCC--CchhhHHHHHHHHHHhcCCchhhhhhhcccccccC---C-chhhHHHHHHHHHH
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---L-PRDFFLYCYYGGMI  186 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~--~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~---~-~~~~l~Y~yy~G~i  186 (347)
                      ...++...|+..++.|+......+  ......+..+-..+...+.|+.|...+.+.+--.+   . ......-++.-|.+
T Consensus       114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  193 (383)
T 3ulq_A          114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN  193 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence            356677778999999987654332  23466788888999999999999999988653222   1 34456778889999


Q ss_pred             HHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---------hcchhH
Q 019008          187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---------NFSQPY  256 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---------~~~~pY  256 (347)
                      |..+++|++|.++|+.++. .|...-......++..+-.+. ...|+.. .-    -....+..+         .....|
T Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~  267 (383)
T 3ulq_A          194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK-NSQSQYE-DA----IPYFKRAIAVFEESNILPSLPQAY  267 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH-HH----HHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHCCCHH-HH----HHHHHHHHHHHHhhccchhHHHHH
Confidence            9999999999999999997 554322222233333322222 2234433 10    011111111         112347


Q ss_pred             HHHHHHH-hcCChHHHHHHHHhccccccc
Q 019008          257 MELVNTY-NTGKIVELETYVQTNREKFES  284 (347)
Q Consensus       257 ~~la~a~-~~g~~~~~~~~~~~~~~~f~~  284 (347)
                      ..++.++ ..|+.++-...+++.-+...+
T Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          268 FLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            7777776 457766666666655544444

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.64  E-value=0.28  Score=45.79  Aligned_cols=169  Identities=9%  Similarity=0.018  Sum_probs=107.0

Q ss_pred             hhhcccccchHHHHHHHHhhCCC--CCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC----chhhHHHHHHHHHH
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMI  186 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~--~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~----~~~~l~Y~yy~G~i  186 (347)
                      ...++...|+..++.|+......  .......+..+-..+...+.|+.|...+.+.+--.+.    ......-++.-|.+
T Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  191 (378)
T 3q15_A          112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN  191 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence            35566777899999988766532  2345667788889999999999999999886432221    23456777889999


Q ss_pred             HHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh--------hcchhHH
Q 019008          187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK--------NFSQPYM  257 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k--------~~~~pY~  257 (347)
                      |..+++|++|.++|+.|+. ++...-......++-.+-.+. ...|+.. .-    -....+..+        .....+.
T Consensus       192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~~~~~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~  265 (378)
T 3q15_A          192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY-DRSGDDQ-MA----VEHFQKAAKVSREKVPDLLPKVLF  265 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHH-HH----HHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHCCCHH-HH----HHHHHHHHHHHHhhCChhHHHHHH
Confidence            9999999999999999997 443222222233333333222 2235443 11    111111111        1134577


Q ss_pred             HHHHHH-hcCChHHHHHHHHhcccccccccc
Q 019008          258 ELVNTY-NTGKIVELETYVQTNREKFESDNN  287 (347)
Q Consensus       258 ~la~a~-~~g~~~~~~~~~~~~~~~f~~D~n  287 (347)
                      .++.++ ..|+.++-....++.-+...+.++
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  296 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSH  296 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence            777776 568887777777776666665444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=95.64  E-value=0.67  Score=40.51  Aligned_cols=94  Identities=15%  Similarity=0.068  Sum_probs=67.8

Q ss_pred             hcccccchHHHHHHHHhhCCCCCchhhH--------------HHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHH
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTEHLTTL--------------HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC  180 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~--------------H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~  180 (347)
                      .+....++..++.++...+.++ .....              +-.+.+.+...+.|+.|...+++-+-..|.+......+
T Consensus       110 ~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~  188 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDRYPNHE-LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDAL  188 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCcCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHH
Confidence            4556667888888777654332 22212              14567888899999999999888665445444566778


Q ss_pred             HHHHHHHHhh----------hcHHHHHHHHHHhhc-CCcc
Q 019008          181 YYGGMIFIGQ----------KRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       181 yy~G~i~~~~----------k~y~~A~~~l~~ai~-~P~~  209 (347)
                      |..|.+|..+          ++|++|...|+.++. .|.+
T Consensus       189 ~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          189 VGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            8889999877          899999999999996 7864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.50  E-value=0.15  Score=52.59  Aligned_cols=154  Identities=13%  Similarity=0.037  Sum_probs=102.9

Q ss_pred             hhcccccchHHHHHHHH-------hhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHH
Q 019008          114 LLEAPIRGVGPMLTAIR-------KIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI  186 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~-------r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i  186 (347)
                      ..+.+..++..++.|+.       ..+|+.   ...+..+.+.++..+.|+.|+..+++.+-.-|   +....+|+.|.+
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~  476 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSES---VELPLMEVRALLDLGDVAKATRKLDDLAERVG---WRWRLVWYRAVA  476 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---CCHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc---chHHHHHHHHHH
Confidence            45566678888888872       334432   34677888999999999999999998664212   346778899999


Q ss_pred             HHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---hcchhHHHHHHH
Q 019008          187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELVNT  262 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---~~~~pY~~la~a  262 (347)
                      +..+++|++|...|+.|+. .|.....      +..+-.+ +...|+.. ...-     ..+..+   .....|..++.+
T Consensus       477 ~~~~g~~~~A~~~~~~al~l~P~~~~~------~~~lg~~-~~~~g~~~-~~~~-----~~~al~~~P~~~~a~~~lg~~  543 (681)
T 2pzi_A          477 ELLTGDYDSATKHFTEVLDTFPGELAP------KLALAAT-AELAGNTD-EHKF-----YQTVWSTNDGVISAAFGLARA  543 (681)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCSHH------HHHHHHH-HHHHTCCC-TTCH-----HHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHH------HHHHHHH-HHHcCChH-HHHH-----HHHHHHhCCchHHHHHHHHHH
Confidence            9999999999999999997 8875322      2222222 34458877 3222     222222   344678999988


Q ss_pred             Hh-cCChHHHHHHHHhcccccccccccc
Q 019008          263 YN-TGKIVELETYVQTNREKFESDNNLG  289 (347)
Q Consensus       263 ~~-~g~~~~~~~~~~~~~~~f~~D~n~g  289 (347)
                      +. .|+.+   +.++.++...+.|.++.
T Consensus       544 ~~~~g~~~---~A~~~~~~al~l~P~~~  568 (681)
T 2pzi_A          544 RSAEGDRV---GAVRTLDEVPPTSRHFT  568 (681)
T ss_dssp             HHHTTCHH---HHHHHHHTSCTTSTTHH
T ss_pred             HHHcCCHH---HHHHHHHhhcccCcccH
Confidence            84 46544   45555566666666543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.46  E-value=0.033  Score=41.23  Aligned_cols=91  Identities=7%  Similarity=-0.210  Sum_probs=67.6

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh-hc
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ-KR  192 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~-k~  192 (347)
                      ..++...++..+..++.. +|..   ...+..+...+...+.|+.|...+++.+-.-+. ......++..|.++..+ ++
T Consensus        18 ~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~   92 (112)
T 2kck_A           18 DAGNYTESIDLFEKAIQL-DPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGK   92 (112)
T ss_dssp             SSCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSC
T ss_pred             HhhhHHHHHHHHHHHHHh-CcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCC
Confidence            345555677777777765 4432   345677888999999999999999886543232 11456778889999999 99


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|.++|+.++. .|..
T Consensus        93 ~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           93 EVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             SHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHhhcccCC
Confidence            9999999999997 6653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=95.42  E-value=0.15  Score=41.77  Aligned_cols=90  Identities=10%  Similarity=0.026  Sum_probs=68.1

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHH-HHhcCCc--hhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQL-CLLAKCY--KAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l-~l~~~~y--~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~  189 (347)
                      ...+....++..++.|+.. +|+.   ...+..+... +...+.|  +.|...+++.+-.-|   +....++..|.++..
T Consensus        55 ~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~  127 (177)
T 2e2e_A           55 LWQNDYSNSLLAYRQALQL-RGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALALDS---NEITALMLLASDAFM  127 (177)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-HCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHH
Confidence            3456666788888888766 4432   3455667777 7789999  999999988654322   234567788999999


Q ss_pred             hhcHHHHHHHHHHhhc-CCcc
Q 019008          190 QKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      +++|++|..+|+.++. .|..
T Consensus       128 ~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          128 QANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             TTCHHHHHHHHHHHHHTCCTT
T ss_pred             cccHHHHHHHHHHHHhhCCCC
Confidence            9999999999999997 7765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.39  E-value=0.29  Score=44.07  Aligned_cols=96  Identities=9%  Similarity=0.010  Sum_probs=70.5

Q ss_pred             hHhhhcccccchHHHHHHHHhhC--CCCCchh-hHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHH
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQ--SSTEHLT-TLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGG  184 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~--~~~~~lT-~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G  184 (347)
                      .....++...|+..+..|+....  +....+. ..+..+...|...+.|+.|+..+++.+--.   +........++..|
T Consensus       164 ~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg  243 (293)
T 2qfc_A          164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG  243 (293)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            33456667778899999884432  2222222 577788899999999999999999865311   11233567789999


Q ss_pred             HHHHhhhcHHHH-HHHHHHhhcC
Q 019008          185 MIFIGQKRFRKA-LELLHNVVTA  206 (347)
Q Consensus       185 ~i~~~~k~y~~A-~~~l~~ai~~  206 (347)
                      .+|..++++++| .++|+.|+..
T Consensus       244 ~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          244 ECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHH
Confidence            999999999999 8889999863

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=95.35  E-value=1  Score=41.71  Aligned_cols=161  Identities=11%  Similarity=-0.005  Sum_probs=96.6

Q ss_pred             cccchHHHHHHHHhhC--CCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC---CchhhHHHHHHHHHHHHhhhc
Q 019008          118 PIRGVGPMLTAIRKIQ--SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       118 ~~~~i~~L~~Ai~r~~--~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~---~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...++..+..++....  .........+..+...+...+.|+.|+..+.+.+--.+   ........++..|.++..+++
T Consensus       199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  278 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ  278 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence            4445666666655432  12233455777888999999999999999988654222   233455678889999999999


Q ss_pred             HHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---------hcchhHHHHHHH
Q 019008          193 FRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---------NFSQPYMELVNT  262 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---------~~~~pY~~la~a  262 (347)
                      |++|..+|+.++. .|...-......++..+..+. ...|+.. .-    -....+..+         .....|..++.+
T Consensus       279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~-~A----~~~~~~al~~~~~~~~~~~~~~~~~~la~~  352 (411)
T 4a1s_A          279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY-TLLHEFN-TA----IEYHNRHLAIAQELGDRIGEARACWSLGNA  352 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH-HH----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHH-HH----HHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence            9999999999997 665433333344444433333 3345544 10    111111111         012256666666


Q ss_pred             H-hcCChHHHHHHHHhccccccc
Q 019008          263 Y-NTGKIVELETYVQTNREKFES  284 (347)
Q Consensus       263 ~-~~g~~~~~~~~~~~~~~~f~~  284 (347)
                      + ..|+.++-.+..++.-+.+.+
T Consensus       353 ~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          353 HSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHhccHHHHHHHHHHHHHHHhh
Confidence            6 457766666666655555544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.33  E-value=0.19  Score=37.48  Aligned_cols=89  Identities=9%  Similarity=0.040  Sum_probs=67.5

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....++..+..++.. +|..   ...+..+...+...+.|+.|...+++.+-.-+   +....++..|.++...++|
T Consensus        21 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~   93 (125)
T 1na0_A           21 KQGDYDEAIEYYQKALEL-DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDY   93 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred             HcCCHHHHHHHHHHHHHH-CcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCH
Confidence            455566678888887765 4432   34667888999999999999999988653222   1245667889999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|..
T Consensus        94 ~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           94 DEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            999999999997 7764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=95.32  E-value=0.15  Score=39.85  Aligned_cols=92  Identities=9%  Similarity=0.003  Sum_probs=68.2

Q ss_pred             hhcccccchHHHHHHHHhhCCC--CCchhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHHH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFI  188 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~--~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~~  188 (347)
                      ..+++..++..++.|+......  .......+..+...+...+.|+.|...+++.+-..   +.+......++..|.++.
T Consensus        21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            3455556777777777665432  23334567788899999999999999998864322   223445677888999999


Q ss_pred             hhhcHHHHHHHHHHhhc
Q 019008          189 GQKRFRKALELLHNVVT  205 (347)
Q Consensus       189 ~~k~y~~A~~~l~~ai~  205 (347)
                      .+++|++|.++|+.++.
T Consensus       101 ~~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A          101 LLQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            99999999999999986

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=95.26  E-value=0.7  Score=42.81  Aligned_cols=96  Identities=14%  Similarity=0.026  Sum_probs=73.5

Q ss_pred             HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccc---cCCchhhHHHHHHHHHH
Q 019008          110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMI  186 (347)
Q Consensus       110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i~~~~~~l~Y~yy~G~i  186 (347)
                      ......++...++..++.|+.....++.....++..+...+...+.|+.|...+++.+-.   ..........++..|.+
T Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  135 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT  135 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            334455666678888888887633323334467888899999999999999998886532   12245667888899999


Q ss_pred             HHhhhcHHHHHHHHHHhhc
Q 019008          187 FIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~  205 (347)
                      +..+++|++|..+|+.++.
T Consensus       136 ~~~~g~~~~A~~~~~~al~  154 (411)
T 4a1s_A          136 LKVMGRFDEAAICCERHLT  154 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999997

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=95.25  E-value=0.15  Score=42.03  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      ..++..|.++..+++|++|.+.|+.++. .|.
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~  139 (184)
T 3vtx_A          108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG  139 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence            3445556666666666666666666665 554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.24  E-value=0.2  Score=39.88  Aligned_cols=89  Identities=18%  Similarity=0.122  Sum_probs=68.9

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..+..++.. +|..   ...+..+...+...+.|+.|...+++.+-.-|   .....++..|.++..+++|
T Consensus        25 ~~~~~~~A~~~~~~al~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~   97 (166)
T 1a17_A           25 KAKDYENAIKFYSQAIEL-NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDK---KYIKGYYRRAASNMALGKF   97 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred             HccCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHhccH
Confidence            455566678888887765 4433   45667788899999999999999988654322   2355678889999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|..
T Consensus        98 ~~A~~~~~~a~~~~p~~  114 (166)
T 1a17_A           98 RAALRDYETVVKVKPHD  114 (166)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            999999999997 7764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=95.21  E-value=0.39  Score=39.92  Aligned_cols=91  Identities=9%  Similarity=0.060  Sum_probs=60.0

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhc-CCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA-KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~-~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ..+....++..+..++.. +|..   ...+..+...+... +.++.|...+++.+- .+........++..|.++...++
T Consensus        54 ~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~  128 (225)
T 2vq2_A           54 YLKVNDKAQESFRQALSI-KPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQ  128 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HcCChHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCC
Confidence            445555667777776654 4432   33556677777788 888888888777654 22223345566777888888888


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|..+|+.++. .|..
T Consensus       129 ~~~A~~~~~~~~~~~~~~  146 (225)
T 2vq2_A          129 FGLAEAYLKRSLAAQPQF  146 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            8888888888886 6653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=95.17  E-value=0.53  Score=42.26  Aligned_cols=92  Identities=10%  Similarity=0.020  Sum_probs=70.6

Q ss_pred             hhcccccchHHHHHHHHhhC---CCCCchhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQ---SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIF  187 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~---~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~  187 (347)
                      ..++...|+..+..|+..+.   ........++..+...+...+.|+.|+..+++.+--.   .........++.-|.++
T Consensus       167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  246 (293)
T 3u3w_A          167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL  246 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            45666678888888886543   2233445577888999999999999999999865321   12334578899999999


Q ss_pred             Hhhh-cHHHHHHHHHHhhc
Q 019008          188 IGQK-RFRKALELLHNVVT  205 (347)
Q Consensus       188 ~~~k-~y~~A~~~l~~ai~  205 (347)
                      ..++ +|++|.++|+.|+.
T Consensus       247 ~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          247 RKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHTTCCHHHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHH
Confidence            9999 58999999999996

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=95.17  E-value=0.08  Score=45.44  Aligned_cols=94  Identities=14%  Similarity=0.033  Sum_probs=73.6

Q ss_pred             hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCc----hhhHHHHHHHHHH
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP----RDFFLYCYYGGMI  186 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~----~~~l~Y~yy~G~i  186 (347)
                      .....+....++..+..|+.. +|+   ....+..+...+...+.|+.|...+++.+-..|..    ......++..|.+
T Consensus        51 ~~~~~~~~~~A~~~~~~al~~-~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  126 (228)
T 4i17_A           51 CADNIKKYKEAADYFDIAIKK-NYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK  126 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHT-TCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcHHHHHHHHHHHHHh-Ccc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHH
Confidence            344566777788888888754 553   35677889999999999999999999876533321    2344778999999


Q ss_pred             HHhhhcHHHHHHHHHHhhc-CCc
Q 019008          187 FIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      +..+++|++|.++|+.++. .|.
T Consensus       127 ~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          127 FQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHhccHHHHHHHHHHHHhcCCC
Confidence            9999999999999999997 675

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=95.16  E-value=0.27  Score=41.98  Aligned_cols=97  Identities=7%  Similarity=0.048  Sum_probs=70.6

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCc---hhhHHHHHHHHHHhcCCchhhhhhhcccccccC------------------
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEH---LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN------------------  171 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~---lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~------------------  171 (347)
                      ...++...++..+..++...+..+..   ....+..+...+...+.++.|...+++.+--.+                  
T Consensus        49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~  128 (258)
T 3uq3_A           49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKA  128 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHH
Confidence            34556666788888887765432211   256778888999999999999998887554111                  


Q ss_pred             -----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          172 -----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       172 -----~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                           ...+....++..|.++...++|++|..+|+.++. .|..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  172 (258)
T 3uq3_A          129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED  172 (258)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence                 1334566778889999999999999999999997 7764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.10  E-value=0.11  Score=38.73  Aligned_cols=80  Identities=11%  Similarity=0.050  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHH
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYK  220 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~K  220 (347)
                      .+..+-..+...+.|+.|...+++.+-.-|   +....++..|.++..+++|++|..+|+.++. .|.+.......+++-
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP---QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            345667788899999999999988664322   2356678899999999999999999999998 787533333444444


Q ss_pred             HHHH
Q 019008          221 KYIL  224 (347)
Q Consensus       221 k~iL  224 (347)
                      ..-.
T Consensus        83 ~~~~   86 (111)
T 2l6j_A           83 RLEL   86 (111)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=95.09  E-value=0.16  Score=42.67  Aligned_cols=94  Identities=11%  Similarity=0.079  Sum_probs=73.2

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC-------------chhhHH
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-------------PRDFFL  178 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~-------------~~~~l~  178 (347)
                      ....+....++..+..|+.. +|..   ...+..+...+...+.|+.|...+++.+-..+.             ......
T Consensus        47 ~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  122 (213)
T 1hh8_A           47 YTILKNMTEAEKAFTRSINR-DKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE  122 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchH
Confidence            33556677788888888876 4432   456788899999999999999999886543222             123457


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       179 Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .++..|.++..+++|++|.++|+.++. .|..
T Consensus       123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            788999999999999999999999997 7764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=95.08  E-value=0.5  Score=40.65  Aligned_cols=97  Identities=7%  Similarity=-0.109  Sum_probs=73.1

Q ss_pred             HHhHhhhcccccchHHHHHHHHhh----CCCCCchhhHHHHHHHHHHhcCCchhhhhhhccccccc-----CCchhhHHH
Q 019008          109 KDQVLLLEAPIRGVGPMLTAIRKI----QSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI-----NLPRDFFLY  179 (347)
Q Consensus       109 ~~~~~~~~~~~~~i~~L~~Ai~r~----~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i-----~~~~~~l~Y  179 (347)
                      +......+....++..++.|+...    .++.......+..+...+...+.|+.|...+.+.+-..     +........
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            333445666777888888888775    22223345667788899999999999999998865421     123456677


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhc
Q 019008          180 CYYGGMIFIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       180 ~yy~G~i~~~~k~y~~A~~~l~~ai~  205 (347)
                      ++..|.++..+++|++|..+|+.++.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88889999999999999999999996

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=95.01  E-value=0.12  Score=44.83  Aligned_cols=96  Identities=8%  Similarity=-0.001  Sum_probs=71.0

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh----
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----  189 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~----  189 (347)
                      ..++...++..+..++.. .|.+......+..+...+...+.|+.|...+++-+-..|.+...-.-+|+.|+++..    
T Consensus        16 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~   94 (225)
T 2yhc_A           16 QDGNWRQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS   94 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence            446666788888888776 444333345677788999999999999999998665444433333446778888875    


Q ss_pred             --------------hhcHHHHHHHHHHhhc-CCccc
Q 019008          190 --------------QKRFRKALELLHNVVT-APMSS  210 (347)
Q Consensus       190 --------------~k~y~~A~~~l~~ai~-~P~~~  210 (347)
                                    ++++++|...|+.++. .|.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             -------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence                          5799999999999997 88753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.98  E-value=0.22  Score=42.64  Aligned_cols=93  Identities=14%  Similarity=0.056  Sum_probs=56.5

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC--------------------
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL--------------------  172 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~--------------------  172 (347)
                      ...+....++..++.|+.. +|+.   ...+..+-..+...+.|+.|...+++.+---|.                    
T Consensus        65 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQK-APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence            3445555566666665544 4432   334555666666666666666666654321111                    


Q ss_pred             ------------chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          173 ------------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       173 ------------~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                                  +.....-+|..|+.+...++|++|..+|+.|+. .|..
T Consensus       141 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          141 KKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence                        000111246679999999999999999999998 7863

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=94.96  E-value=0.17  Score=44.57  Aligned_cols=100  Identities=9%  Similarity=-0.037  Sum_probs=73.8

Q ss_pred             HHHhHhhhcccccchHHHHHHHHhhCC----CCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC------------
Q 019008          108 YKDQVLLLEAPIRGVGPMLTAIRKIQS----STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN------------  171 (347)
Q Consensus       108 ~~~~~~~~~~~~~~i~~L~~Ai~r~~~----~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~------------  171 (347)
                      ++......++...++..++.++.....    +.......+..+.+.+...+.++.|...+.+.+-..+            
T Consensus       159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  238 (311)
T 3nf1_A          159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK  238 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence            333444566777788888888876432    1333456778889999999999999999887552100            


Q ss_pred             ----------------------------------CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008          172 ----------------------------------LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP  207 (347)
Q Consensus       172 ----------------------------------~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P  207 (347)
                                                        ........++..|.+|..+++|++|..+|+.++. .|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                                              1345667788899999999999999999999986 44

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=94.84  E-value=0.59  Score=37.28  Aligned_cols=90  Identities=4%  Similarity=-0.122  Sum_probs=67.9

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...++...++..+..++.. +|..   ...+..+.+.+...+.++.|...+.+.+-..+   +....++..|.++..+++
T Consensus        87 ~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~  159 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEA-NPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP---NEGKVHRAIAFSYEQMGR  159 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred             HHhcCHHHHHHHHHHHHhc-CcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHcCC
Confidence            3456666778888887766 4332   45667788999999999999999988654322   224667888999999999


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|..+|+.++. .|..
T Consensus       160 ~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          160 HEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCCCc
Confidence            9999999999986 6654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=94.83  E-value=2.3  Score=38.74  Aligned_cols=164  Identities=10%  Similarity=-0.007  Sum_probs=98.7

Q ss_pred             cccchHHHHHHHHhhCCC--CCchhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHHHhhhc
Q 019008          118 PIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       118 ~~~~i~~L~~Ai~r~~~~--~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...++..+..|+......  .......+..+...+...+.|+.|...+++.+--.   +.+......++..|.++..+++
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            444666666666554322  23345567788899999999999999998865322   2244556678889999999999


Q ss_pred             HHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---h------cchhHHHHHHH
Q 019008          193 FRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---N------FSQPYMELVNT  262 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k---~------~~~pY~~la~a  262 (347)
                      |++|..+|+.++. .|...-......++..+-.+. ...|+.. .-    -....+..+   .      ....|..++.+
T Consensus       243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~-~A----~~~~~~a~~~~~~~~~~~~~~~~~~~la~~  316 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYE-KA----IDYHLKHLAIAQELNDRIGEGRACWSLGNA  316 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH-HH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH-HHhCcHH-HH----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            9999999999996 555433333344444333332 2345544 11    011111111   1      12356666766


Q ss_pred             H-hcCChHHHHHHHHhcccccccccc
Q 019008          263 Y-NTGKIVELETYVQTNREKFESDNN  287 (347)
Q Consensus       263 ~-~~g~~~~~~~~~~~~~~~f~~D~n  287 (347)
                      + ..|+.++-.+..++.-+.+.+-++
T Consensus       317 ~~~~g~~~~A~~~~~~al~~~~~~~~  342 (406)
T 3sf4_A          317 YTALGNHDQAMHFAEKHLEISREVGD  342 (406)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            6 457766666666655555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=94.81  E-value=0.22  Score=45.60  Aligned_cols=92  Identities=11%  Similarity=0.023  Sum_probs=68.6

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...+....++..++.++.. +|... -...+..+...+...+.|+.|...+.+.+-.-|   +....++..|.++..+++
T Consensus       188 ~~~g~~~~A~~~~~~al~~-~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~  262 (365)
T 4eqf_A          188 VDSSVLEGVKELYLEAAHQ-NGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP---EDYSLWNRLGATLANGDR  262 (365)
T ss_dssp             -CCHHHHHHHHHHHHHHHH-SCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred             hhhhhHHHHHHHHHHHHHh-CcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCC
Confidence            3455566678888888776 44311 245677888999999999999999988654322   224566788999999999


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|..+|+.++. .|..
T Consensus       263 ~~~A~~~~~~al~~~p~~  280 (365)
T 4eqf_A          263 SEEAVEAYTRALEIQPGF  280 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhcCCCc
Confidence            9999999999997 7764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=94.79  E-value=0.055  Score=41.67  Aligned_cols=66  Identities=12%  Similarity=0.024  Sum_probs=52.9

Q ss_pred             HHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          144 PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      -.+...++..+.|+.|...+++-+-..|........+|..|.++..+++|++|..+|+.++. .|.+
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            34567888999999999999886543343434447788899999999999999999999997 7764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=94.75  E-value=1.9  Score=37.59  Aligned_cols=116  Identities=9%  Similarity=-0.043  Sum_probs=75.5

Q ss_pred             cccchHHHHHHHHhhCC--CCCchhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHHHHHHhhhc
Q 019008          118 PIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       118 ~~~~i~~L~~Ai~r~~~--~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...++..+..++.....  +.......+..+...+...+.++.|...+++.+-..   +.+......++..|.++...++
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence            34455666655543321  223345567778899999999999999998865322   2244456688889999999999


Q ss_pred             HHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCC
Q 019008          193 FRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFS  234 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~  234 (347)
                      |++|..+|+.++. .|...-......++-.+..+. ...|+..
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~  280 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYE  280 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-HHhcCHH
Confidence            9999999999996 555433333344444333332 3345544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.71  E-value=0.048  Score=41.27  Aligned_cols=66  Identities=15%  Similarity=0.098  Sum_probs=54.0

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      ...+..+-..+...+.|+.|...+++.+---|   +....++..|.++..+++|++|.++|+.++. .|.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDP---DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            34567788999999999999999998764322   2344778889999999999999999999997 565

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=94.70  E-value=2.6  Score=38.88  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=74.2

Q ss_pred             hHhhhcccccchHHHHHHHHhhCCCCC---chhhHHHHHHHHHHhcCCchhhhhhhccccccc---CCchhhHHHHHHHH
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQSSTE---HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGG  184 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~---~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i---~~~~~~l~Y~yy~G  184 (347)
                      .....+++..|+..+..|+.-+...+.   .....+..+-..+...+.|+.|++.+.+.+--.   +.+......++..|
T Consensus       152 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  231 (383)
T 3ulq_A          152 SYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIG  231 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            334567777889999999887765432   234567778899999999999999998865322   22445567788899


Q ss_pred             HHHHhhhcHHHHHHHHHHhhc
Q 019008          185 MIFIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       185 ~i~~~~k~y~~A~~~l~~ai~  205 (347)
                      .+|..+++|++|.++|+.++.
T Consensus       232 ~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          232 LCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999997

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=94.69  E-value=0.29  Score=43.02  Aligned_cols=95  Identities=6%  Similarity=-0.072  Sum_probs=72.9

Q ss_pred             HhhhcccccchHHHHHHHHhhC----CCCCchhhHHHHHHHHHHhcCCchhhhhhhccccccc-----CCchhhHHHHHH
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQ----SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI-----NLPRDFFLYCYY  182 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~----~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i-----~~~~~~l~Y~yy  182 (347)
                      ....+....++..++.|+....    ++.......+..+...+...+.|+.|...+.+.+-..     +........++.
T Consensus        79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  158 (311)
T 3nf1_A           79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN  158 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            3345666678888888877642    2233456677888999999999999999998865422     224566778888


Q ss_pred             HHHHHHhhhcHHHHHHHHHHhhcC
Q 019008          183 GGMIFIGQKRFRKALELLHNVVTA  206 (347)
Q Consensus       183 ~G~i~~~~k~y~~A~~~l~~ai~~  206 (347)
                      .|.++..+++|++|.++|+.++..
T Consensus       159 la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          159 LALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999974

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=94.66  E-value=0.24  Score=41.32  Aligned_cols=93  Identities=5%  Similarity=-0.153  Sum_probs=71.9

Q ss_pred             HhHhhh-cccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q 019008          110 DQVLLL-EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI  188 (347)
Q Consensus       110 ~~~~~~-~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~  188 (347)
                      ...... +....++..+..++.  .|....-...+..+...+...+.++.|...+.+.+-.-|   +....++..|.++.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~  158 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP---QFPPAFKELARTKM  158 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCchHHHHHHHHHH
Confidence            334456 777778888888887  333333456778889999999999999999988654322   22456778899999


Q ss_pred             hhhcHHHHHHHHHHhhc-CC
Q 019008          189 GQKRFRKALELLHNVVT-AP  207 (347)
Q Consensus       189 ~~k~y~~A~~~l~~ai~-~P  207 (347)
                      .+++|++|...|+.++. .|
T Consensus       159 ~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          159 LAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999997 67

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=94.66  E-value=0.18  Score=47.05  Aligned_cols=98  Identities=8%  Similarity=-0.024  Sum_probs=74.7

Q ss_pred             HHhHhhhcccccchHHHHHHHHhhCCCC-----------CchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhH
Q 019008          109 KDQVLLLEAPIRGVGPMLTAIRKIQSST-----------EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFF  177 (347)
Q Consensus       109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~-----------~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l  177 (347)
                      +..+...++...|+..++.|+......+           ......+..+..+++..+.|+.|+..+++.+---|   +..
T Consensus       154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p---~~~  230 (336)
T 1p5q_A          154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS---NNE  230 (336)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcH
Confidence            3334456667778888888887643321           01145778889999999999999999998764322   245


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..+|..|.++..+++|++|..+|+.++. .|.+
T Consensus       231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          231 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            6778999999999999999999999997 8875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=94.65  E-value=0.098  Score=49.90  Aligned_cols=94  Identities=11%  Similarity=0.024  Sum_probs=70.5

Q ss_pred             hhhcccccchHHHHHHHHhhCC------------CCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHH
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQS------------STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC  180 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~------------~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~  180 (347)
                      ...++...|+..++.|+.....            ........+..+...++..+.|+.|+..+++.+-- +  .+....+
T Consensus       234 ~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~--p~~~~a~  310 (370)
T 1ihg_A          234 FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-D--PSNTKAL  310 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--TTCHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-C--chhHHHH
Confidence            3455566677778877763211            01123567788889999999999999999987642 2  2346678


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          181 YYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       181 yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      |..|.++..+++|++|...|+.|+. .|.+
T Consensus       311 ~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~  340 (370)
T 1ihg_A          311 YRRAQGWQGLKEYDQALADLKKAQEIAPED  340 (370)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            8999999999999999999999997 7864

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=94.65  E-value=1.4  Score=41.28  Aligned_cols=97  Identities=5%  Similarity=-0.037  Sum_probs=73.9

Q ss_pred             HHhHhhhcccccchHHHHHHHHhhCCCC-CchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHH
Q 019008          109 KDQVLLLEAPIRGVGPMLTAIRKIQSST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF  187 (347)
Q Consensus       109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~-~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~  187 (347)
                      ...+...+....++..+..++.. +|+. ......+..+...+...+.++.|+..+++.+-.-|   +....++..|.++
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~  339 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP---DNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHH
Confidence            33444567777788888888874 5543 22345778889999999999999999998653212   2346678889999


Q ss_pred             HhhhcHHHHHHHHHHhhc-CCcc
Q 019008          188 IGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       188 ~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..+++|++|..+|+.++. .|..
T Consensus       340 ~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             HHhcCHHHHHHHHHHHHHhCcch
Confidence            999999999999999997 7875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.63  E-value=0.28  Score=46.07  Aligned_cols=128  Identities=13%  Similarity=0.130  Sum_probs=84.6

Q ss_pred             hhhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHh-HhhhcccccchHHHHHHHHhhCCC--CCchhhHHHHHHHHH
Q 019008           74 RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQ-VLLLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLC  150 (347)
Q Consensus        74 ~~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~L~~Ai~r~~~~--~~~lT~~H~~ll~l~  150 (347)
                      +..++...+..+...++....       ...+....+. ....+....++...+.++......  ......++..+.+.+
T Consensus        73 ~a~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  145 (434)
T 4b4t_Q           73 KLREFIPHSTEYMMQFAKSKT-------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH  145 (434)
T ss_dssp             HHHHHHHHTHHHHHTSCHHHH-------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccchHH-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            455566666666665543211       1111111121 122344455677777766554332  223466788899999


Q ss_pred             HhcCCchhhhhhhcccccc---cCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          151 LLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       151 l~~~~y~~Al~~l~~~i~~---i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      ...+.|+.|++++..-...   .+.....+.++..-|.+|..+++|++|..+++.+++ .|.
T Consensus       146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            9999999999999875332   233567789999999999999999999999999986 444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=94.59  E-value=0.1  Score=45.45  Aligned_cols=91  Identities=8%  Similarity=-0.029  Sum_probs=59.4

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..+..++. ..+++......+..+...+...+.|+.|...+++.+-.-|.   ....++..|.++..+++|
T Consensus        49 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~  124 (272)
T 3u4t_A           49 ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT---RLDMYGQIGSYFYNKGNF  124 (272)
T ss_dssp             HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCH
T ss_pred             HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHccCH
Confidence            34555567777777776 34444444555677777777888888888777775432221   224566677777778888


Q ss_pred             HHHHHHHHHhhc-CCc
Q 019008          194 RKALELLHNVVT-APM  208 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~  208 (347)
                      ++|..+|+.++. .|.
T Consensus       125 ~~A~~~~~~al~~~~~  140 (272)
T 3u4t_A          125 PLAIQYMEKQIRPTTT  140 (272)
T ss_dssp             HHHHHHHGGGCCSSCC
T ss_pred             HHHHHHHHHHhhcCCC
Confidence            888888877776 554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=94.55  E-value=0.7  Score=38.01  Aligned_cols=93  Identities=8%  Similarity=-0.043  Sum_probs=69.9

Q ss_pred             hhhcccccchHHHHHHHHhhCCCC--CchhhHHHHHHHHHHhcCCchhhhhhhcccccc---cC-CchhhHHHHHHHHHH
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSST--EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---IN-LPRDFFLYCYYGGMI  186 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~--~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i~-~~~~~l~Y~yy~G~i  186 (347)
                      ...+....++..++.|+......+  ......+..+...+...+.|+.|.+.+.+.+--   .+ .+......++..|.+
T Consensus        37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  116 (203)
T 3gw4_A           37 AFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATV  116 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence            345566667888888887665433  234556677888999999999999999886442   22 233556778889999


Q ss_pred             HHhhhcHHHHHHHHHHhhc
Q 019008          187 FIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~  205 (347)
                      +..+++|++|..+|+.++.
T Consensus       117 ~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A          117 ALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHH
Confidence            9999999999999999986

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=94.53  E-value=0.096  Score=43.18  Aligned_cols=88  Identities=9%  Similarity=0.056  Sum_probs=66.5

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..+..|+.. +|..   ...+..+-..+...+.|+.|+..+++.+---|   +....++..|.++..+++|
T Consensus        85 ~~~~~~~a~~~~~~a~~~-~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIAL-NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP---GFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred             HcCCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc---hhhhHHHHHHHHHHHCCCH
Confidence            344455567777777654 5543   34567788999999999999999988654212   2356778889999999999


Q ss_pred             HHHHHHHHHhhc-CCc
Q 019008          194 RKALELLHNVVT-APM  208 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~  208 (347)
                      ++|.++|+.|+. -|.
T Consensus       158 ~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          158 DEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            999999999997 664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=94.49  E-value=0.71  Score=42.13  Aligned_cols=93  Identities=11%  Similarity=-0.017  Sum_probs=61.3

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC--------------------
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL--------------------  172 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~--------------------  172 (347)
                      ...++...++..++.|+.. +|..   ...+..+...+...+.|+.|...+.+.+-.-|.                    
T Consensus       110 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~  185 (365)
T 4eqf_A          110 AENENEQAAIVALQRCLEL-QPNN---LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK  185 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred             HHCCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence            3456666788888887765 4432   446778888899999999998888764321110                    


Q ss_pred             ----------------------ch-hhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          173 ----------------------PR-DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       173 ----------------------~~-~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                                            +. .....++..|.++..+++|++|..+|+.++. .|..
T Consensus       186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  246 (365)
T 4eqf_A          186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED  246 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence                                  11 0344556667777777777777777777775 5653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=94.47  E-value=0.48  Score=42.54  Aligned_cols=93  Identities=8%  Similarity=0.059  Sum_probs=65.0

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhcCCchhhhhhhccccc---ccCCchh-hHHHHHHHHHH
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EINLPRD-FFLYCYYGGMI  186 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~---~i~~~~~-~l~Y~yy~G~i  186 (347)
                      ...++...++..+..|+........  .....+..+-..+...+.|+.|+..+.+.+-   ..+.... ....++..|.+
T Consensus       126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~  205 (293)
T 2qfc_A          126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA  205 (293)
T ss_dssp             HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence            3445566688888888765433221  2244667778888899999999999888652   1222222 23677888999


Q ss_pred             HHhhhcHHHHHHHHHHhhc
Q 019008          187 FIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~  205 (347)
                      |..+++|++|..+|+.++.
T Consensus       206 y~~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          206 LYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            9999999999999999885

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.45  E-value=0.68  Score=39.40  Aligned_cols=90  Identities=8%  Similarity=-0.055  Sum_probs=70.1

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..+..++..-++..   ...+..+...+...+.|+.|+..+++.+-.-|   +....++..|.++..+++|
T Consensus        19 ~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~   92 (228)
T 4i17_A           19 NAKNYAVAFEKYSEYLKLTNNQD---SVTAYNCGVCADNIKKYKEAADYFDIAIKKNY---NLANAYIGKSAAYRDMKNN   92 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---SHHHHHHHHHHHHHHTTCH
T ss_pred             HccCHHHHHHHHHHHHhccCCCC---cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc---chHHHHHHHHHHHHHcccH
Confidence            45666678888888876643122   24555688999999999999999998764322   3566788899999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|...|+.++. .|.+
T Consensus        93 ~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           93 QEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHCCCc
Confidence            999999999997 8875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=94.43  E-value=0.2  Score=48.99  Aligned_cols=98  Identities=10%  Similarity=-0.004  Sum_probs=72.9

Q ss_pred             HHhHhhhcccccchHHHHHHHHhhCCCC-----------CchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhH
Q 019008          109 KDQVLLLEAPIRGVGPMLTAIRKIQSST-----------EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFF  177 (347)
Q Consensus       109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~-----------~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l  177 (347)
                      +..+...++...|+..++.|+......+           ......+..+..+++..+.|+.|+..+++.+---|   +..
T Consensus       275 G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p---~~~  351 (457)
T 1kt0_A          275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS---ANE  351 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccH
Confidence            3334456667778888888887644321           01246778889999999999999999998764322   246


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..+|..|.+|..+++|++|..+|+.|+. .|.+
T Consensus       352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            6788999999999999999999999997 7865

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=94.42  E-value=2.7  Score=37.82  Aligned_cols=147  Identities=9%  Similarity=-0.033  Sum_probs=90.1

Q ss_pred             ccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHH
Q 019008          119 IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALE  198 (347)
Q Consensus       119 ~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~  198 (347)
                      ..++..+..|+..++|+.   ..+|..+.......+.++.|..++++.+- +++ .+.-..++.-|.++..++++++|..
T Consensus        81 ~~A~~~~~rAl~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p-~~~~~~~~~~~~~~~~~~~~~~A~~  155 (308)
T 2ond_A           81 DEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLA-IED-IDPTLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SSS-SCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccc-cCccHHHHHHHHHHHHhcCHHHHHH
Confidence            457888999998777754   45788889999999999999999998764 332 2221123333677888999999999


Q ss_pred             HHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhh---hhcchhHHHHHHHH-hcCChHHHHH
Q 019008          199 LLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNL---KNFSQPYMELVNTY-NTGKIVELET  273 (347)
Q Consensus       199 ~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~---k~~~~pY~~la~a~-~~g~~~~~~~  273 (347)
                      .|+.++. .|.. .     ++|-.+.++..-..|+.. .    .-....+..   ......+..++... ..|+.++-..
T Consensus       156 ~~~~a~~~~p~~-~-----~~~~~~a~~~~~~~~~~~-~----A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  224 (308)
T 2ond_A          156 IFKKAREDARTR-H-----HVYVTAALMEYYCSKDKS-V----AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV  224 (308)
T ss_dssp             HHHHHHTSTTCC-T-----HHHHHHHHHHHHTSCCHH-H----HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHhcCCCC-H-----HHHHHHHHHHHHHcCCHH-H----HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999998 4543 2     122233333222234433 1    111111111   12234555666655 4478777777


Q ss_pred             HHHhcccc
Q 019008          274 YVQTNREK  281 (347)
Q Consensus       274 ~~~~~~~~  281 (347)
                      ..++.-..
T Consensus       225 ~~~~al~~  232 (308)
T 2ond_A          225 LFERVLTS  232 (308)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhc
Confidence            77765554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.38  E-value=0.11  Score=38.29  Aligned_cols=62  Identities=16%  Similarity=0.084  Sum_probs=49.5

Q ss_pred             HHHHHHhcCCchhhhhhhcccccccCCchhhHH-HHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccc
Q 019008          146 FLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFL-YCYYGGMIFIGQKRFRKALELLHNVVT-APMSS  210 (347)
Q Consensus       146 ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~-Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~  210 (347)
                      ....++..+.|+.|...+++.+-.-|  . ... .++..|.++..+++|++|..+|+.++. .|...
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEP--V-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCS--S-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC--C-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            45677889999999999988654322  2 234 778889999999999999999999997 78653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=94.33  E-value=0.16  Score=38.25  Aligned_cols=88  Identities=9%  Similarity=0.023  Sum_probs=62.1

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....++..+..++.. +|..   ...+..+...+...+.++.|...+++.+-..+.   ....++..|.++...+++
T Consensus        47 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~  119 (136)
T 2fo7_A           47 KQGDYDEAIEYYQKALEL-DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDY  119 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCH
T ss_pred             HhcCHHHHHHHHHHHHHH-CCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHccH
Confidence            345555677777777654 4432   345667788899999999999988875432221   234556678999999999


Q ss_pred             HHHHHHHHHhhc-CCc
Q 019008          194 RKALELLHNVVT-APM  208 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~  208 (347)
                      ++|..+|+.++. .|.
T Consensus       120 ~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          120 DEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCCC
Confidence            999999999886 553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=94.31  E-value=0.054  Score=44.23  Aligned_cols=84  Identities=15%  Similarity=0.075  Sum_probs=62.7

Q ss_pred             ccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHH
Q 019008          119 IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALE  198 (347)
Q Consensus       119 ~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~  198 (347)
                      -++|..++.|+.. +|.   -...+-.+.+++...+.|+.|.+.+++.+-- +  .+....++..|.++..+++|++|..
T Consensus        14 e~ai~~~~~a~~~-~p~---~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-~--p~~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A           14 ERYIASVQGSTPS-PRQ---KSIKGFYFAKLYYEAKEYDLAKKYICTYINV-Q--ERDPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             HHHHHHHHHHSCS-HHH---HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhccc-Ccc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHcCchHHHHH
Confidence            3455655555443 221   1334567889999999999999999987642 2  1346678889999999999999999


Q ss_pred             HHHHhhc-CCcc
Q 019008          199 LLHNVVT-APMS  209 (347)
Q Consensus       199 ~l~~ai~-~P~~  209 (347)
                      +|+.++. .|..
T Consensus        87 ~~~~al~~~p~~   98 (150)
T 4ga2_A           87 CYRRSVELNPTQ   98 (150)
T ss_dssp             HHHHHHHHCTTC
T ss_pred             HHHHHHHhCCCC
Confidence            9999998 8875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=94.29  E-value=0.4  Score=42.87  Aligned_cols=84  Identities=7%  Similarity=-0.084  Sum_probs=37.4

Q ss_pred             hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHH
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR  194 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~  194 (347)
                      .+....++..+..++.. +|..   ...+..+...+...+.++.|...+++.+-..|   +....++..|.++..+++|+
T Consensus       133 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~  205 (359)
T 3ieg_A          133 GADYTAAITFLDKILEV-CVWD---AELRELRAECFIKEGEPRKAISDLKAASKLKS---DNTEAFYKISTLYYQLGDHE  205 (359)
T ss_dssp             TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS---CCHHHHHHHHHHHHHHTCHH
T ss_pred             ccCHHHHHHHHHHHHHh-CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHH
Confidence            34444455555544433 2221   22344455555555555555555554332211   11233344445555555555


Q ss_pred             HHHHHHHHhhc
Q 019008          195 KALELLHNVVT  205 (347)
Q Consensus       195 ~A~~~l~~ai~  205 (347)
                      +|...|+.++.
T Consensus       206 ~A~~~~~~a~~  216 (359)
T 3ieg_A          206 LSLSEVRECLK  216 (359)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            55555555553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=94.27  E-value=0.18  Score=43.48  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=70.1

Q ss_pred             cccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHH
Q 019008          116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK  195 (347)
Q Consensus       116 ~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~  195 (347)
                      +....++..++.|+.. +|+.   ...+..+-..+...+.++.|+..+++.+- ++   +....++..|.++..+++|++
T Consensus        98 g~~~~A~~~~~~al~~-~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~---~~~~~~~~la~~~~~~g~~~~  169 (217)
T 2pl2_A           98 GYLEQALSVLKDAERV-NPRY---APLHLQRGLVYALLGERDKAEASLKQALA-LE---DTPEIRSALAELYLSMGRLDE  169 (217)
T ss_dssp             HHHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHHHTCHHH
T ss_pred             cCHHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc---cchHHHHHHHHHHHHcCCHHH
Confidence            5566688888888765 6643   45778888999999999999999998654 22   456677899999999999999


Q ss_pred             HHHHHHHhhc-CCcc
Q 019008          196 ALELLHNVVT-APMS  209 (347)
Q Consensus       196 A~~~l~~ai~-~P~~  209 (347)
                      |...|+.++. .|..
T Consensus       170 A~~~~~~al~~~P~~  184 (217)
T 2pl2_A          170 ALAQYAKALEQAPKD  184 (217)
T ss_dssp             HHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            9999999997 7875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=94.26  E-value=0.28  Score=42.14  Aligned_cols=92  Identities=7%  Similarity=-0.049  Sum_probs=69.3

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...+....++..+..++.  .+....-...+..+...+...+.++.|...+.+.+-.-+   .....++..|.++..+++
T Consensus       116 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~  190 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR---NQPSVALEMADLLYKERE  190 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCC
Confidence            345666678888888776  222222355677888999999999999999988654222   225567888999999999


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|..+|+.++. .|..
T Consensus       191 ~~~A~~~~~~~~~~~~~~  208 (252)
T 2ho1_A          191 YVPARQYYDLFAQGGGQN  208 (252)
T ss_dssp             HHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHhCcCc
Confidence            9999999999997 6643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=94.10  E-value=1.2  Score=43.45  Aligned_cols=90  Identities=3%  Similarity=-0.054  Sum_probs=72.5

Q ss_pred             Hhhhccc-ccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008          112 VLLLEAP-IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       112 ~~~~~~~-~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~  190 (347)
                      ....+.. ..|+..++.|+.. +|..   ...+..+-..+...+.|+.|...+++.+-- + +.  ...++..|.++..+
T Consensus       112 ~~~~g~~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~--~~~~~~lg~~~~~~  183 (474)
T 4abn_A          112 LNVTPDYSPEAEVLLSKAVKL-EPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTH-C-KN--KVSLQNLSMVLRQL  183 (474)
T ss_dssp             HTSSSSCCHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-C-CC--HHHHHHHHHHHTTC
T ss_pred             HHhccccHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CC--HHHHHHHHHHHHHh
Confidence            3455666 7788999888765 5543   457788999999999999999999987643 2 22  37888999999999


Q ss_pred             ---------hcHHHHHHHHHHhhc-CCcc
Q 019008          191 ---------KRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       191 ---------k~y~~A~~~l~~ai~-~P~~  209 (347)
                               ++|++|..+|+.++. .|..
T Consensus       184 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~  212 (474)
T 4abn_A          184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLD  212 (474)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence                     999999999999997 7875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=94.07  E-value=0.19  Score=44.68  Aligned_cols=91  Identities=12%  Similarity=0.070  Sum_probs=48.5

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC------chhhHHHHHHHHHHH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIF  187 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~------~~~~l~Y~yy~G~i~  187 (347)
                      ..++...++..++.++.. +|..   ...+..+...+...+.|+.|...+.+.+-..+.      .......++..|.++
T Consensus       171 ~~~~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~  246 (330)
T 3hym_B          171 LTNNSKLAERFFSQALSI-APED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC  246 (330)
T ss_dssp             HTTCHHHHHHHHHHHHTT-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence            344555566666655544 3322   234556666666666666666666554332110      122334455556666


Q ss_pred             HhhhcHHHHHHHHHHhhc-CCc
Q 019008          188 IGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       188 ~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      ..+++|++|..+|+.++. .|.
T Consensus       247 ~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          247 RKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhcCHHHHHHHHHHHHhhCcc
Confidence            666666666666666664 454

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=94.04  E-value=0.17  Score=40.58  Aligned_cols=90  Identities=12%  Similarity=0.088  Sum_probs=67.8

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...+....++..+..++.. +|..   ...+..+...+...+.++.|...+++.+-..+   +....++..|.++..+++
T Consensus        53 ~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~  125 (186)
T 3as5_A           53 VKTGAVDRGTELLERSLAD-APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP---INFNVRFRLGVALDNLGR  125 (186)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc---HhHHHHHHHHHHHHHcCc
Confidence            3456666788888888766 4432   34567788899999999999999987654322   234667788999999999


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|.++|+.++. .|..
T Consensus       126 ~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A          126 FDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhcCccc
Confidence            9999999999997 5653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=94.04  E-value=0.25  Score=42.58  Aligned_cols=129  Identities=8%  Similarity=-0.083  Sum_probs=85.4

Q ss_pred             hhhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhC----CCCCchhhHHHHHHHH
Q 019008           74 RANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQ----SSTEHLTTLHPEFLQL  149 (347)
Q Consensus        74 ~~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~----~~~~~lT~~H~~ll~l  149 (347)
                      .+..+..+....+....+..-...+..+..+.    ......+....++..+..|+....    ++.......+..+...
T Consensus        19 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~   94 (283)
T 3edt_B           19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILA----LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL   94 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            45556666666554321100011122333333    333345666677888888776641    2233456677888999


Q ss_pred             HHhcCCchhhhhhhccccccc-----CCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcC
Q 019008          150 CLLAKCYKAGLSVLEDDIYEI-----NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA  206 (347)
Q Consensus       150 ~l~~~~y~~Al~~l~~~i~~i-----~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~  206 (347)
                      +...+.|+.|...+.+.+-..     +........++..|.++..+++|++|.++|+.++..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999865422     223566788889999999999999999999999965

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=94.03  E-value=0.22  Score=42.95  Aligned_cols=91  Identities=9%  Similarity=0.001  Sum_probs=71.1

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh-
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ-  190 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~-  190 (347)
                      +...++...++..++.|+.. +|+.   ...+..+-..+...+.++.|...+++.+---|   +....++..|.++..+ 
T Consensus        15 ~~~~g~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~~   87 (217)
T 2pl2_A           15 LYALGRYDAALTLFERALKE-NPQD---PEALYWLARTQLKLGLVNPALENGKTLVARTP---RYLGGYMVLSEAYVALY   87 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT-SSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHhh
Confidence            34556666788888887754 6543   45678889999999999999999988654212   2355677889999999 


Q ss_pred             ----------hcHHHHHHHHHHhhc-CCcc
Q 019008          191 ----------KRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       191 ----------k~y~~A~~~l~~ai~-~P~~  209 (347)
                                ++|++|...|+.++. .|..
T Consensus        88 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~  117 (217)
T 2pl2_A           88 RQAEDRERGKGYLEQALSVLKDAERVNPRY  117 (217)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhhhcccccCHHHHHHHHHHHHHhCccc
Confidence                      999999999999997 8875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=94.01  E-value=0.31  Score=36.57  Aligned_cols=88  Identities=9%  Similarity=0.030  Sum_probs=64.6

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....++..++.++.. +|..   ...+..+...+...+.++.|...+++.+-.-+   .....++..|.++...++|
T Consensus        13 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~   85 (136)
T 2fo7_A           13 KQGDYDEAIEYYQKALEL-DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDY   85 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCH
T ss_pred             HcCcHHHHHHHHHHHHHc-CCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHhcCH
Confidence            345555677777777654 4432   34556778889999999999999988653222   1244566779999999999


Q ss_pred             HHHHHHHHHhhc-CCc
Q 019008          194 RKALELLHNVVT-APM  208 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~  208 (347)
                      ++|..+|+.++. .|.
T Consensus        86 ~~A~~~~~~~~~~~~~  101 (136)
T 2fo7_A           86 DEAIEYYQKALELDPR  101 (136)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            999999999997 554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=94.00  E-value=3.6  Score=38.86  Aligned_cols=91  Identities=9%  Similarity=-0.035  Sum_probs=66.9

Q ss_pred             hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~  190 (347)
                      .....+....++..+..++.. +|.    ...+..+...+...+.++.|...+++.+-.-|.   ....++..|.++...
T Consensus       246 ~~~~~~~~~~A~~~~~~~l~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~  317 (514)
T 2gw1_A          246 FKFLKNDPLGAHEDIKKAIEL-FPR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN---NSSVYYHRGQMNFIL  317 (514)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHH-CCC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT---CTHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHhh-Ccc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC---CHHHHHHHHHHHHHh
Confidence            334556666778888777655 443    667788889999999999999998886543222   233567778899999


Q ss_pred             hcHHHHHHHHHHhhc-CCcc
Q 019008          191 KRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       191 k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ++|++|..+|+.++. .|..
T Consensus       318 ~~~~~A~~~~~~~~~~~~~~  337 (514)
T 2gw1_A          318 QNYDQAGKDFDKAKELDPEN  337 (514)
T ss_dssp             TCTTHHHHHHHHHHHTCSSC
T ss_pred             CCHHHHHHHHHHHHHhChhh
Confidence            999999999999986 6654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=93.95  E-value=2.6  Score=41.00  Aligned_cols=93  Identities=12%  Similarity=0.099  Sum_probs=53.1

Q ss_pred             hhcccccchHHHHHHHHhhC---CCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008          114 LLEAPIRGVGPMLTAIRKIQ---SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~---~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~  190 (347)
                      ..++...++..++.++....   .++......+..+...|...+.++.|...+++-+-.-|   +....++..|.+|...
T Consensus       487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~  563 (597)
T 2xpi_A          487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST---NDANVHTAIALVYLHK  563 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS---CCHHHHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHh
Confidence            34445556666666655431   12222345566666777777777777776665432111   1234555666677777


Q ss_pred             hcHHHHHHHHHHhhc-CCcc
Q 019008          191 KRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       191 k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ++|++|.++|+.++. .|.+
T Consensus       564 g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          564 KIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTC
T ss_pred             CCHHHHHHHHHHHHhcCCCC
Confidence            777777777777775 5654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=93.93  E-value=0.11  Score=44.48  Aligned_cols=89  Identities=12%  Similarity=0.038  Sum_probs=62.0

Q ss_pred             hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~  190 (347)
                      .....+....++..+..++.. +|..   ...+..+...+...+.|+.|...+++.+-.-|   +....++..|.++..+
T Consensus       148 ~~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~  220 (258)
T 3uq3_A          148 EYFTKSDWPNAVKAYTEMIKR-APED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---NFVRAYIRKATAQIAV  220 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHHHHhc-Cccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHH
Confidence            334456666677777777665 3332   34667777888888888888888877643222   2345667778888888


Q ss_pred             hcHHHHHHHHHHhhc-C
Q 019008          191 KRFRKALELLHNVVT-A  206 (347)
Q Consensus       191 k~y~~A~~~l~~ai~-~  206 (347)
                      ++|++|..+|+.++. .
T Consensus       221 g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          221 KEYASALETLDAARTKD  237 (258)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhC
Confidence            888888888888886 5

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=93.90  E-value=0.15  Score=36.49  Aligned_cols=67  Identities=10%  Similarity=0.087  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ...+..+...+...+.|+.|.+.+.+.+-.-|   +....++..|.++..+++|++|..+|+.++. .|..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34566778889999999999999988654222   2346678889999999999999999999997 7764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=93.85  E-value=0.12  Score=44.23  Aligned_cols=65  Identities=8%  Similarity=0.047  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ++..+-..+...+.|+.|...+++.+---|   +....++..|.++..+++|++|..+|+.++. .|.+
T Consensus        56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           56 LATELALAYKKNRNYDKAYLFYKELLQKAP---NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            334488899999999999999998654222   2356778889999999999999999999997 8875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.81  E-value=0.24  Score=44.79  Aligned_cols=90  Identities=9%  Similarity=0.005  Sum_probs=70.8

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...++...|+..+..|+.. +|+.   ...+..+...+...+.|+.|...+++.+-- +  .+....+|..|.++..+++
T Consensus        15 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~--p~~~~~~~~lg~~~~~~g~   87 (281)
T 2c2l_A           15 FVGRKYPEAAACYGRAITR-NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL-D--GQSVKAHFFLGQCQLEMES   87 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-C--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHcCC
Confidence            3456666788888888876 5532   456788889999999999999999987642 2  2345677888999999999


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|...|+.++. .|.+
T Consensus        88 ~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           88 YDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCccc
Confidence            9999999999997 7753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.68  E-value=0.15  Score=39.84  Aligned_cols=70  Identities=9%  Similarity=-0.035  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ...+..+...+...+.|+.|.+.+.+.+-.-+........++..|.++..+++|++|..+|+.++. .|..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence            445677889999999999999999987643333334578888899999999999999999999997 6654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=93.62  E-value=3  Score=39.72  Aligned_cols=85  Identities=8%  Similarity=0.030  Sum_probs=42.6

Q ss_pred             cccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHH
Q 019008          118 PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKAL  197 (347)
Q Consensus       118 ~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~  197 (347)
                      ...++..+..|+.. +|..   ...|..+-.++...+.|+.|+..+++.+-- +  .+...-+++.|.++..+++|++|.
T Consensus       148 ~~eAl~~~~~al~l-~P~~---~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-d--P~~~~a~~~lg~~~~~~g~~~eAl  220 (382)
T 2h6f_A          148 LHEEMNYITAIIEE-QPKN---YQVWHHRRVLVEWLRDPSQELEFIADILNQ-D--AKNYHAWQHRQWVIQEFKLWDNEL  220 (382)
T ss_dssp             HHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C--ccCHHHHHHHHHHHHHcCChHHHH
Confidence            44445555444432 3322   223344444445555555555555554321 1  122334456666666666666676


Q ss_pred             HHHHHhhc-CCcc
Q 019008          198 ELLHNVVT-APMS  209 (347)
Q Consensus       198 ~~l~~ai~-~P~~  209 (347)
                      .+|+.++. -|.+
T Consensus       221 ~~~~~al~l~P~~  233 (382)
T 2h6f_A          221 QYVDQLLKEDVRN  233 (382)
T ss_dssp             HHHHHHHHHCTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            66666665 5543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=93.56  E-value=0.34  Score=41.97  Aligned_cols=91  Identities=10%  Similarity=-0.027  Sum_probs=67.1

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      ....+....++..++.|+.. +|..   ...+..+...+...+.|+.|...+++.+-.-|   .....++..|.++..++
T Consensus        53 ~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g  125 (275)
T 1xnf_A           53 YDSLGLRALARNDFSQALAI-RPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP---TYNYAHLNRGIALYYGG  125 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHTT
T ss_pred             HHHcccHHHHHHHHHHHHHc-CCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc---cccHHHHHHHHHHHHhc
Confidence            33456666788888887765 4432   44667788888999999999998888654222   12456777888999999


Q ss_pred             cHHHHHHHHHHhhc-CCcc
Q 019008          192 RFRKALELLHNVVT-APMS  209 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~~  209 (347)
                      +|++|..+|+.++. .|..
T Consensus       126 ~~~~A~~~~~~a~~~~~~~  144 (275)
T 1xnf_A          126 RDKLAQDDLLAFYQDDPND  144 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHHHhCCCC
Confidence            99999999999997 7764

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.49  E-value=0.22  Score=45.98  Aligned_cols=78  Identities=17%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHH
Q 019008          257 MELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQ  336 (347)
Q Consensus       257 ~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~  336 (347)
                      .++-+++..||..+|-+...+...-  ..-.--++..+...++...+..+.++|.+||++++++.++.+|++|+..++.+
T Consensus       146 l~le~al~eGnY~kff~l~~~~~~p--~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~  223 (274)
T 4b4t_T          146 IKLDRWLMEGSYQKAWDLLQSGSQN--ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE  223 (274)
T ss_dssp             HHHHHHHHHTCSHHHHHHHHTCTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH
Confidence            3455777889988887766543211  00112488899999999999999999999999999999999999999988875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=93.22  E-value=0.36  Score=47.49  Aligned_cols=89  Identities=18%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHH
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR  194 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~  194 (347)
                      .++...|+..++.|+.. +|+.   ...+..+...+...+.|+.|+..+++.+-- +  .+....++..|.+|..+++|+
T Consensus        19 ~g~~~~A~~~~~~Al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~--p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           19 AKDYENAIKFYSQAIEL-NPSN---AIYYGNRSLAYLRTECYGYALGDATRAIEL-D--KKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-C--TTCHHHHHHHHHHHHHHTCHH
T ss_pred             hCCHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHcCCHH
Confidence            44555677888887765 5543   557788899999999999999999987542 2  134567788899999999999


Q ss_pred             HHHHHHHHhhc-CCccc
Q 019008          195 KALELLHNVVT-APMSS  210 (347)
Q Consensus       195 ~A~~~l~~ai~-~P~~~  210 (347)
                      +|..+|+.++. .|...
T Consensus        92 eA~~~~~~al~~~p~~~  108 (477)
T 1wao_1           92 AALRDYETVVKVKPHDK  108 (477)
T ss_dssp             HHHHHHHHHHHHSTTCT
T ss_pred             HHHHHHHHHHHhCCCCH
Confidence            99999999997 78754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=93.21  E-value=0.18  Score=41.79  Aligned_cols=66  Identities=8%  Similarity=-0.157  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS  210 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~  210 (347)
                      .+..+-..+...+.|+.|...+++.+---|   +...+++..|.++..+++|++|.++|+.++. .|.+.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P---~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF---YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence            456677888999999999999998664222   3466888899999999999999999999998 88753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=93.16  E-value=0.19  Score=42.73  Aligned_cols=88  Identities=15%  Similarity=0.027  Sum_probs=47.3

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....++..+..++... |..   ...+..+...+...+.++.|...+++.+-.-+   +....++..|.++...++|
T Consensus       103 ~~~~~~~A~~~~~~~~~~~-~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAG-MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE---NDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHT-CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCC
T ss_pred             HhccHHHHHHHHHHHHHhC-CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHcCCH
Confidence            3444445556665555442 221   22445556666666666666666665432211   1233445556666666666


Q ss_pred             HHHHHHHHHhhc-CCc
Q 019008          194 RKALELLHNVVT-APM  208 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~  208 (347)
                      ++|..+|+.++. .|.
T Consensus       176 ~~A~~~~~~~~~~~~~  191 (243)
T 2q7f_A          176 DEALSQFAAVTEQDPG  191 (243)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            666666666665 443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=93.11  E-value=5.8  Score=38.49  Aligned_cols=85  Identities=11%  Similarity=-0.029  Sum_probs=58.5

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....++..++.++.. +|..   ...+..+...|...+.++.|..++++-+-.-+.   ....++.-|.++...++|
T Consensus       419 ~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~  491 (597)
T 2xpi_A          419 IEGEHDQAISAYTTAARL-FQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY---DPLLLNELGVVAFNKSDM  491 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHT-TTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCH
T ss_pred             HcCCHHHHHHHHHHHHHh-Cccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhCCH
Confidence            455666677777777654 3322   234567778888888888888888875432121   123466778888888899


Q ss_pred             HHHHHHHHHhhc
Q 019008          194 RKALELLHNVVT  205 (347)
Q Consensus       194 ~~A~~~l~~ai~  205 (347)
                      ++|.++|+.++.
T Consensus       492 ~~A~~~~~~~~~  503 (597)
T 2xpi_A          492 QTAINHFQNALL  503 (597)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988888886

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=93.10  E-value=0.22  Score=39.74  Aligned_cols=65  Identities=8%  Similarity=-0.187  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+..+...++..+.|+.|...+.+.+-.-|   +...+++..|.++..+++|++|..+|+.++. .|.+
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH---YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            445667888999999999999988654222   3456788899999999999999999999997 7865

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.07  E-value=1.7  Score=39.09  Aligned_cols=100  Identities=11%  Similarity=-0.045  Sum_probs=72.2

Q ss_pred             HhHhhh-cccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhcCCchhhhhhhcccccccCCch----hhHHHHHH
Q 019008          110 DQVLLL-EAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR----DFFLYCYY  182 (347)
Q Consensus       110 ~~~~~~-~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~----~~l~Y~yy  182 (347)
                      ...... +.+..|+..++.|+......+.  .....+..+...+...+.|+.|+..+++.+---+...    ....+++-
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  204 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            333443 7788899999999887654332  2244567788999999999999999998654322211    23456777


Q ss_pred             HHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          183 GGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       183 ~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .|.++..++++++|..+|+.++. .|..
T Consensus       205 lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          205 KGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            89999999999999999999998 7764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=93.05  E-value=0.21  Score=40.56  Aligned_cols=68  Identities=6%  Similarity=-0.162  Sum_probs=54.7

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS  210 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~  210 (347)
                      ...+..+...+...+.|+.|...+.+.+-.-|   ....+++..|.++..+++|++|..+|+.++. .|.+.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   89 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH---YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP   89 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            34556678899999999999999988654212   2356678899999999999999999999997 78653

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18

Probab=93.04  E-value=0.2  Score=44.98  Aligned_cols=75  Identities=13%  Similarity=0.030  Sum_probs=56.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHH
Q 019008          256 YMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVL  335 (347)
Q Consensus       256 Y~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~  335 (347)
                      =..|.+....|+..+|=+.++...      +....|.-...++++.-..-+.++|++|+++++++.+|..|+++++..+.
T Consensus       102 i~~L~~~L~~~~y~~fW~~l~~~~------~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~  175 (226)
T 1rz4_A          102 ILYLGDLLETCHFQAFWQALDENM------DLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS  175 (226)
T ss_dssp             HHHHHHHHHTTCHHHHHHHSCTTC------HHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCh------hHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence            356778888999887777665421      11223333456778888899999999999999999997667899988886


Q ss_pred             H
Q 019008          336 Q  336 (347)
Q Consensus       336 ~  336 (347)
                      +
T Consensus       176 ~  176 (226)
T 1rz4_A          176 K  176 (226)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=92.93  E-value=0.15  Score=44.24  Aligned_cols=87  Identities=14%  Similarity=0.023  Sum_probs=64.6

Q ss_pred             cchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHH
Q 019008          120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALEL  199 (347)
Q Consensus       120 ~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~  199 (347)
                      .++..+..++.....++..-...+..+...+...+.|+.|...+++.+-.-|   .....++..|.++...++|++|..+
T Consensus        23 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~   99 (275)
T 1xnf_A           23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---DMPEVFNYLGIYLTQAGNFDAAYEA   99 (275)
T ss_dssp             HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHccCHHHHHHH
Confidence            3556666666553222223455677888999999999999999988654222   2345677889999999999999999


Q ss_pred             HHHhhc-CCcc
Q 019008          200 LHNVVT-APMS  209 (347)
Q Consensus       200 l~~ai~-~P~~  209 (347)
                      |+.++. .|..
T Consensus       100 ~~~al~~~~~~  110 (275)
T 1xnf_A          100 FDSVLELDPTY  110 (275)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHhcCccc
Confidence            999997 7764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=92.89  E-value=0.34  Score=44.03  Aligned_cols=86  Identities=12%  Similarity=0.087  Sum_probs=48.6

Q ss_pred             cccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHH
Q 019008          118 PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKAL  197 (347)
Q Consensus       118 ~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~  197 (347)
                      ...++..+..++.. +|+.. -...+..+...+...+.|+.|...+.+.+-.-|   +....++..|.++..+++|++|.
T Consensus       197 ~~~A~~~~~~a~~~-~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          197 FLEVKELFLAAVRL-DPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP---NDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHH-STTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHh-CcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHcCCHHHHH
Confidence            33455556555543 44311 134555666677777777777777666443211   12344556666777777777777


Q ss_pred             HHHHHhhc-CCc
Q 019008          198 ELLHNVVT-APM  208 (347)
Q Consensus       198 ~~l~~ai~-~P~  208 (347)
                      .+|+.++. .|.
T Consensus       272 ~~~~~al~~~~~  283 (368)
T 1fch_A          272 AAYRRALELQPG  283 (368)
T ss_dssp             HHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCC
Confidence            77777765 554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=92.88  E-value=0.22  Score=38.35  Aligned_cols=65  Identities=6%  Similarity=-0.095  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+...-..+...+.|+.|+..+++.+-.-|   +....++..|.++..+++|++|...|+.++. .|..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   71 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP---EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF   71 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            345566788999999999999998764322   2357788899999999999999999999997 7764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=92.86  E-value=0.33  Score=41.11  Aligned_cols=90  Identities=16%  Similarity=0.074  Sum_probs=66.9

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...+....++..++.++.. +|..   ...+..+...+...+.++.|...+++.+-..+.   ....++..|.++..+++
T Consensus        68 ~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~  140 (243)
T 2q7f_A           68 SSVNELERALAFYDKALEL-DSSA---ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---NGDLFYMLGTVLVKLEQ  140 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHTSC
T ss_pred             HHcCCHHHHHHHHHHHHHc-CCcc---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcc
Confidence            3456666788888887765 4432   456778889999999999999999886542221   23456778899999999


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|..+|+.++. .|..
T Consensus       141 ~~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A          141 PKLALPYLQRAVELNEND  158 (243)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCcc
Confidence            9999999999997 6753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=92.85  E-value=0.66  Score=41.90  Aligned_cols=93  Identities=10%  Similarity=-0.043  Sum_probs=63.0

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC-------------------
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-------------------  172 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~-------------------  172 (347)
                      +...+....++..++.|+.. +|+.   ...+..+.+.++..+.++.|...+++-+-.-|.                   
T Consensus       127 ~~~~g~~~~A~~~~~~al~~-~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~  202 (287)
T 3qou_A          127 LMQESNYTDALPLLXDAWQL-SNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADT  202 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-TTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHhCCCHHHHHHHHHHHHHh-CCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccC
Confidence            34566777788888887765 6543   457788999999999999999999875432111                   


Q ss_pred             ------------chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          173 ------------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       173 ------------~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                                  ..+....+|..|.++...++|++|...|+.++. .|.
T Consensus       203 ~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~  251 (287)
T 3qou_A          203 PEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT  251 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence                        112344555566666666666666666666665 554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=92.84  E-value=6  Score=36.73  Aligned_cols=153  Identities=9%  Similarity=0.035  Sum_probs=94.9

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCch---hhH---------HHH
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR---DFF---------LYC  180 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~---~~l---------~Y~  180 (347)
                      ...+....++..++.++.. +|+.   ...+..+...+...+.++.|...+++.+-.-|...   ...         .-+
T Consensus        71 ~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  146 (450)
T 2y4t_A           71 LAMGKSKAALPDLTKVIQL-KMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL  146 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhc-CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH
Confidence            3456666788888888765 5532   55778889999999999999999988654323221   111         114


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhh---hhcchhH
Q 019008          181 YYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNL---KNFSQPY  256 (347)
Q Consensus       181 yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~---k~~~~pY  256 (347)
                      +-.|.++...++|++|..+|+.++. .|....      ++-.+. ..+...|+.. .-    -....+..   ......|
T Consensus       147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~-~~~~~~g~~~-~A----~~~~~~~~~~~~~~~~~~  214 (450)
T 2y4t_A          147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAE------LRELRA-ECFIKEGEPR-KA----ISDLKAASKLKNDNTEAF  214 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------HHHHHH-HHHHHTTCGG-GG----HHHHHHHHHHHCSCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHH-HHHHHCCCHH-HH----HHHHHHHHHhCCCCHHHH
Confidence            5568899999999999999999997 675421      222222 1223456655 21    11222222   1234567


Q ss_pred             HHHHHHH-hcCChHHHHHHHHhcccc
Q 019008          257 MELVNTY-NTGKIVELETYVQTNREK  281 (347)
Q Consensus       257 ~~la~a~-~~g~~~~~~~~~~~~~~~  281 (347)
                      ..++..+ ..|+.++-...+++....
T Consensus       215 ~~l~~~~~~~g~~~~A~~~~~~~~~~  240 (450)
T 2y4t_A          215 YKISTLYYQLGDHELSLSEVRECLKL  240 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7888877 457766655555544333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=92.80  E-value=2.5  Score=40.36  Aligned_cols=89  Identities=8%  Similarity=0.047  Sum_probs=68.4

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...+....++..++.++.. +|+    ...+..+...+...+.|+.|...+.+.+-.-|   +....++..|.++...++
T Consensus       254 ~~~~~~~~A~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~  325 (537)
T 3fp2_A          254 FLKNNLLDAQVLLQESINL-HPT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNP---EYPPTYYHRGQMYFILQD  325 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-CCC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred             HhcccHHHHHHHHHHHHhc-CCC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHhcCC
Confidence            3456666788888887764 554    34567788899999999999999988654322   234557888999999999


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      |++|...|+.++. .|..
T Consensus       326 ~~~A~~~~~~a~~~~~~~  343 (537)
T 3fp2_A          326 YKNAKEDFQKAQSLNPEN  343 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            9999999999997 7764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=92.74  E-value=0.37  Score=36.55  Aligned_cols=69  Identities=12%  Similarity=0.071  Sum_probs=56.1

Q ss_pred             chhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          138 HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       138 ~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .-...+..+...+...+.|+.|...+++.+-.-+   +....++..|.++..+++|++|..+|+.++. .|..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~   83 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF   83 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            3455667788999999999999999998654322   2356788899999999999999999999997 6753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=92.64  E-value=0.17  Score=39.65  Aligned_cols=63  Identities=11%  Similarity=-0.126  Sum_probs=52.2

Q ss_pred             HHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          144 PEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      -.+...++..+.++.|...+++.+-.-|   +....++..|.++..+++|++|..+|+.++. .|..
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4566788999999999999998764322   3466778899999999999999999999998 7864

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=92.64  E-value=0.51  Score=38.53  Aligned_cols=53  Identities=15%  Similarity=0.080  Sum_probs=26.6

Q ss_pred             cCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          153 AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       153 ~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      .+.|+.|...+.+.+-.-|   +....++..|.++...++|++|..+|+.++. .|.
T Consensus        23 ~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   76 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANP---QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE   76 (177)
T ss_dssp             ----CCCCHHHHHHHHHCC---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS
T ss_pred             ccCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            4455555555544332111   1234556666666666666666666666665 554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=92.62  E-value=0.77  Score=44.83  Aligned_cols=90  Identities=11%  Similarity=-0.040  Sum_probs=69.5

Q ss_pred             cccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhc--------CCchhhhhhhcccccccCCchhhHHHHHHHHHHH
Q 019008          116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA--------KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF  187 (347)
Q Consensus       116 ~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~--------~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~  187 (347)
                      +....|+..++.|+.. +|+.   ...+..+...+...        +.|+.|+..+++.+---|...+....++..|.++
T Consensus       193 g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~  268 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQM-DVLD---GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH  268 (474)
T ss_dssp             HHHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH
Confidence            6666788888888775 5543   34567777777777        8899999999886542121225678888999999


Q ss_pred             HhhhcHHHHHHHHHHhhc-CCcc
Q 019008          188 IGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       188 ~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..+++|++|.++|+.++. .|..
T Consensus       269 ~~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          269 KYEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999997 7865

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=92.59  E-value=0.25  Score=38.99  Aligned_cols=68  Identities=7%  Similarity=0.015  Sum_probs=55.7

Q ss_pred             hhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       139 lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ....|...=..+...+.|+.|+..+++.+---|   .....++..|.++..+++|++|...|+.|+. -|..
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence            355667777889999999999999998764222   2356788899999999999999999999997 6764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=92.49  E-value=0.27  Score=38.07  Aligned_cols=67  Identities=10%  Similarity=0.046  Sum_probs=55.3

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ...+..+...+...+.|+.|...+.+.+-.-|   +....++..|.++..+++|++|..+|+.++. .|..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence            44567788899999999999999998654322   2356788889999999999999999999997 7764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=92.48  E-value=0.74  Score=41.84  Aligned_cols=91  Identities=12%  Similarity=0.072  Sum_probs=69.4

Q ss_pred             HHHhHhhhcccccchHHHHHHHHh-hCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHH
Q 019008          108 YKDQVLLLEAPIRGVGPMLTAIRK-IQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI  186 (347)
Q Consensus       108 ~~~~~~~~~~~~~~i~~L~~Ai~r-~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i  186 (347)
                      +...+...+....++..+...+.. .+|+.   +..|..+...+...+.++.|+..++++        +....++..|.+
T Consensus        71 la~~~~~~~~~~~A~~~l~~ll~~~~~P~~---~~~~~~la~~~~~~g~~~~Al~~l~~~--------~~~~~~~~l~~~  139 (291)
T 3mkr_A           71 FAEYLASHSRRDAIVAELDREMSRSVDVTN---TTFLLMAASIYFYDQNPDAALRTLHQG--------DSLECMAMTVQI  139 (291)
T ss_dssp             HHHHHHCSTTHHHHHHHHHHHHHSCCCCSC---HHHHHHHHHHHHHTTCHHHHHHHHTTC--------CSHHHHHHHHHH
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHhcccCCCC---HHHHHHHHHHHHHCCCHHHHHHHHhCC--------CCHHHHHHHHHH
Confidence            334444444455677888777655 35643   456788889999999999999999992        235577788999


Q ss_pred             HHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          187 FIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      +..++++++|...|+.++. .|..
T Consensus       140 ~~~~g~~~~A~~~l~~~~~~~p~~  163 (291)
T 3mkr_A          140 LLKLDRLDLARKELKKMQDQDEDA  163 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCc
Confidence            9999999999999999997 7764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=92.43  E-value=0.57  Score=42.04  Aligned_cols=93  Identities=8%  Similarity=0.036  Sum_probs=70.5

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCc--hhhHHHHHHHHHHhcCCchhhhhhhcccccc---c-CCchhhHHHHHHHHHH
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEH--LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---I-NLPRDFFLYCYYGGMI  186 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~--lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i-~~~~~~l~Y~yy~G~i  186 (347)
                      ...++...|+..+..|+......+..  ...++..+-..+...+.|+.|+..+.+.+-.   . .........++..|.+
T Consensus       126 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~  205 (293)
T 3u3w_A          126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA  205 (293)
T ss_dssp             TTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             HcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            34455667899999998843333322  2335677888999999999999999986631   1 1245667788999999


Q ss_pred             HHhhhcHHHHHHHHHHhhc
Q 019008          187 FIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~  205 (347)
                      |..+++|++|.++++.++.
T Consensus       206 y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          206 LYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHH
Confidence            9999999999999999996

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=92.39  E-value=0.23  Score=40.35  Aligned_cols=67  Identities=10%  Similarity=0.031  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ...+..+-..+...+.|+.|+..+++.+-.-|   +...+++..|.++..+++|++|..+|+.++. .|..
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~   78 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP---ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY   78 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            44567778899999999999999998764322   2367788899999999999999999999997 7764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=92.35  E-value=0.29  Score=39.73  Aligned_cols=89  Identities=9%  Similarity=-0.108  Sum_probs=68.9

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...|+..+..|+.. +|+.   ...|..+-..+...+.++.|...+.+.+---|   +....++..|.++..+++|
T Consensus        43 ~~~~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~  115 (150)
T 4ga2_A           43 EAKEYDLAKKYICTYINV-QERD---PKAHRFLGLLYELEENTDKAVECYRRSVELNP---TQKDLVLKIAELLCKNDVT  115 (150)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCSS
T ss_pred             HcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCh
Confidence            456666788888888765 6643   56788999999999999999999998764212   2345677789999999999


Q ss_pred             HHHHH-HHHHhhc-CCcc
Q 019008          194 RKALE-LLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~-~l~~ai~-~P~~  209 (347)
                      ++|.. +++.|+. .|.+
T Consensus       116 ~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A          116 DGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             SSHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhCcCC
Confidence            87664 5799998 8875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=92.24  E-value=0.54  Score=35.24  Aligned_cols=64  Identities=11%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      .+..+...+...+.|+.|...+.+.+-..|   +....++..|.++..+++|++|..+|+.++. .|.
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   70 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE   70 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence            456677888999999999999988654322   2356678889999999999999999999986 554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=92.21  E-value=0.51  Score=39.77  Aligned_cols=64  Identities=19%  Similarity=0.265  Sum_probs=48.6

Q ss_pred             HHHHHHHhcC---CchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          145 EFLQLCLLAK---CYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       145 ~ll~l~l~~~---~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+.....+++   .++.|..+++.-+- .+.+.+.-.|+||.|..++.+++|++|..+++.++. -|.+
T Consensus        37 ~ya~~Lv~S~~~~~~~~gI~lLe~ll~-~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n  104 (152)
T 1pc2_A           37 EYAWCLVRSKYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHh-cCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            3444555666   56688888877443 222335678899999999999999999999999997 8875

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=92.02  E-value=0.3  Score=35.96  Aligned_cols=64  Identities=14%  Similarity=0.007  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      .+..+...+...+.|+.|...+++.+-..|   .....++..|.++..+++|++|...|+.++. .|.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            456677888999999999999988654322   2356778889999999999999999999997 564

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=91.84  E-value=0.39  Score=42.53  Aligned_cols=88  Identities=15%  Similarity=0.086  Sum_probs=57.9

Q ss_pred             hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHH
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR  194 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~  194 (347)
                      .++...++..+..++.. +|..   ...+..+...+...+.++.|...+.+.+-.-|   +....++..|.++...++|+
T Consensus       151 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~  223 (327)
T 3cv0_A          151 PNEYRECRTLLHAALEM-NPND---AQLHASLGVLYNLSNNYDSAAANLRRAVELRP---DDAQLWNKLGATLANGNRPQ  223 (327)
T ss_dssp             HHHHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHH
T ss_pred             cccHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHH
Confidence            34444566666666654 4432   34566777788888888888888877543212   22455667788888888888


Q ss_pred             HHHHHHHHhhc-CCcc
Q 019008          195 KALELLHNVVT-APMS  209 (347)
Q Consensus       195 ~A~~~l~~ai~-~P~~  209 (347)
                      +|..+|+.++. .|..
T Consensus       224 ~A~~~~~~a~~~~~~~  239 (327)
T 3cv0_A          224 EALDAYNRALDINPGY  239 (327)
T ss_dssp             HHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            88888888886 6653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=91.70  E-value=0.23  Score=39.19  Aligned_cols=64  Identities=8%  Similarity=0.173  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      .|..+=..+...+.|+.|+..+++.+- +++  +...+++..|.+|..+++|++|.+.|+.++. .|.
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~-~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~   74 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIE-LDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE   74 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence            345556678899999999999998764 221  2356788899999999999999999999996 564

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=91.70  E-value=0.31  Score=40.88  Aligned_cols=86  Identities=7%  Similarity=0.067  Sum_probs=64.2

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..+..++   +++    ...+..+...+...+.|+.|...+++.+-.-|   .....++..|.++..+++|
T Consensus        18 ~~~~~~~A~~~~~~a~---~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A           18 DKKDWKGALDAFSAVQ---DPH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDK---HLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HTTCHHHHHHHHHTSS---SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred             HhCCHHHHHHHHHHHc---CCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHcccH
Confidence            4455555666666663   332    34677888899999999999999988654222   2356677889999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|.++|+.++. .|.+
T Consensus        88 ~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            999999999997 7764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=91.69  E-value=0.37  Score=41.58  Aligned_cols=94  Identities=5%  Similarity=-0.092  Sum_probs=64.9

Q ss_pred             hcccccchHHHHHHHHhhCCCCCchh-------------hHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHH
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTEHLT-------------TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCY  181 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT-------------~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~y  181 (347)
                      .++...|+..++.++.+++.+.....             ..+..+.+.+...+.|+.|...+++-+-..|.+...-.-++
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  188 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP  188 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence            34556678888887777544332111             11234556778889999999888886655454444456778


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          182 YGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       182 y~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      ..|.++..++++++|...|+.+.. .|.
T Consensus       189 ~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          189 LMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            889999999999999999988886 554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=91.47  E-value=0.32  Score=45.38  Aligned_cols=92  Identities=12%  Similarity=-0.016  Sum_probs=64.9

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCc--------------hhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEH--------------LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLY  179 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~--------------lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y  179 (347)
                      ..++...|+..++.|+.. +|....              ....|..+..+++..+.|+.|+..+++.+-- +  .+....
T Consensus       191 ~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~--p~~~~a  266 (338)
T 2if4_A          191 KEEKLEEAMQQYEMAIAY-MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE-E--EKNPKA  266 (338)
T ss_dssp             SSSCCHHHHHHHHHHHHH-SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-C--TTCHHH
T ss_pred             hcCCHHHHHHHHHHHHHH-hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--CCCHHH
Confidence            445555566767666654 332110              1137788889999999999999999886542 2  134567


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          180 CYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       180 ~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      +|..|.++..+++|++|..+|+.++. .|.+
T Consensus       267 ~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~  297 (338)
T 2if4_A          267 LFRRGKAKAELGQMDSARDDFRKAQKYAPDD  297 (338)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            88999999999999999999999997 7764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=91.42  E-value=0.51  Score=42.94  Aligned_cols=113  Identities=13%  Similarity=0.139  Sum_probs=75.2

Q ss_pred             HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008          110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~  189 (347)
                      ..+...+.+-.|+..++.++.. +|+. ..+.+...++.++...+.|+.|..++++-+-..|   +....++-.|.++..
T Consensus       138 ~~~~~~g~~~~A~~~l~~~~~~-~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p---~~~~~~~~la~~~~~  212 (291)
T 3mkr_A          138 QILLKLDRLDLARKELKKMQDQ-DEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS---PTLLLLNGQAACHMA  212 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-CTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhh-CcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHH
Confidence            3445667777788888887765 5543 2333333455666666889999999887654323   235567778999999


Q ss_pred             hhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCC
Q 019008          190 QKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFS  234 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~  234 (347)
                      +++|++|...|+.++. .|.+.      +++-.+..+. ...|+..
T Consensus       213 ~g~~~eA~~~l~~al~~~p~~~------~~l~~l~~~~-~~~g~~~  251 (291)
T 3mkr_A          213 QGRWEAAEGVLQEALDKDSGHP------ETLINLVVLS-QHLGKPP  251 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHH-HHTTCCH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHH-HHcCCCH
Confidence            9999999999999997 77642      2233444333 3457654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=91.32  E-value=0.71  Score=48.25  Aligned_cols=93  Identities=12%  Similarity=-0.019  Sum_probs=57.0

Q ss_pred             HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008          110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~  189 (347)
                      ..+.+.++...|+..++.|+.. +|+.   ...|..+-..+...+.|+.|+..+++.+- ++  .+....++..|.++..
T Consensus        51 ~~l~~~g~~~eA~~~~~~Al~l-~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~-l~--P~~~~a~~~Lg~~~~~  123 (723)
T 4gyw_A           51 SVLQQQGKLQEALMHYKEAIRI-SPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQ-IN--PAFADAHSNLASIHKD  123 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--CCCHHHHHHHHHHHHH
Confidence            3344555666666766666543 5432   44566666777777777777777766542 11  1234556666777777


Q ss_pred             hhcHHHHHHHHHHhhc-CCcc
Q 019008          190 QKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      +++|++|.++|+.|+. .|..
T Consensus       124 ~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A          124 SGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCC
T ss_pred             cCCHHHHHHHHHHHHHhCCCC
Confidence            7777777777777775 6654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=91.18  E-value=0.85  Score=40.31  Aligned_cols=85  Identities=8%  Similarity=-0.014  Sum_probs=44.8

Q ss_pred             ccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHH
Q 019008          117 APIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKA  196 (347)
Q Consensus       117 ~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A  196 (347)
                      ....++..+..++.. +|..   ...+..+...+...+.|+.|...+.+.+-..|.   ...-+++.|.++...++|++|
T Consensus       106 ~~~~A~~~~~~a~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B          106 KNEHARRYLSKATTL-EKTY---GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG---CHLPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             CHHHHHHHHHHHHTT-CTTC---THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT---CSHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHh-CCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHhhHHHH
Confidence            344455555555543 3321   223455666666666666666666654332121   112233356666666666666


Q ss_pred             HHHHHHhhc-CCc
Q 019008          197 LELLHNVVT-APM  208 (347)
Q Consensus       197 ~~~l~~ai~-~P~  208 (347)
                      .++|+.++. .|.
T Consensus       179 ~~~~~~al~~~~~  191 (330)
T 3hym_B          179 ERFFSQALSIAPE  191 (330)
T ss_dssp             HHHHHHHHTTCTT
T ss_pred             HHHHHHHHHhCCC
Confidence            666666665 454

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=91.04  E-value=8.4  Score=34.58  Aligned_cols=94  Identities=9%  Similarity=0.053  Sum_probs=72.1

Q ss_pred             cccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHhcCCchhhhhhhcccccccC---CchhhHHHHHHHHHHHHhh
Q 019008          116 EAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       116 ~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~---~~~~~l~Y~yy~G~i~~~~  190 (347)
                      +.+..++..++.|+.-....+.  .....+..+...+...+.|+.|+..+++.+--.+   .......+++-.|.++..+
T Consensus       129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~  208 (307)
T 2ifu_A          129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR  208 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence            7777889999999887654332  2345667788999999999999999998654221   1223456788889999999


Q ss_pred             hcHHHHHHHHHHhhcCCcc
Q 019008          191 KRFRKALELLHNVVTAPMS  209 (347)
Q Consensus       191 k~y~~A~~~l~~ai~~P~~  209 (347)
                      ++|++|..+|+.++..|..
T Consensus       209 g~~~~A~~~~~~al~~p~~  227 (307)
T 2ifu_A          209 ADYVAAQKCVRESYSIPGF  227 (307)
T ss_dssp             TCHHHHHHHHHHHTTSTTS
T ss_pred             CCHHHHHHHHHHHhCCCCC
Confidence            9999999999999966654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=90.99  E-value=0.25  Score=36.21  Aligned_cols=63  Identities=16%  Similarity=0.095  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       143 H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      +..+...+...+.|+.|...+++.+-.-+   .....++..|.++..+++|++|..+|+.++. .|.
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDP---EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            35567788899999999999988654222   1245677889999999999999999999997 665

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=90.81  E-value=0.79  Score=42.31  Aligned_cols=87  Identities=8%  Similarity=-0.014  Sum_probs=44.0

Q ss_pred             hcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHH
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR  194 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~  194 (347)
                      .+....++..++.++.. +|..   ...+..+...+...+.|+.|...+++.+---|   +....++..|.++...++|+
T Consensus        46 ~~~~~~a~~~~~~a~~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~  118 (388)
T 1w3b_A           46 CRRLDRSAHFSTLAIKQ-NPLL---AEAYSNLGNVYKERGQLQEAIEHYRHALRLKP---DFIDGYINLAAALVAAGDME  118 (388)
T ss_dssp             TTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHSCSS
T ss_pred             cCCHHHHHHHHHHHHhc-CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc---chHHHHHHHHHHHHHcCCHH
Confidence            33344444444444433 3321   33455555666666666666666655432111   12333445566666666666


Q ss_pred             HHHHHHHHhhc-CCc
Q 019008          195 KALELLHNVVT-APM  208 (347)
Q Consensus       195 ~A~~~l~~ai~-~P~  208 (347)
                      +|...|+.++. .|.
T Consensus       119 ~A~~~~~~al~~~p~  133 (388)
T 1w3b_A          119 GAVQAYVSALQYNPD  133 (388)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCC
Confidence            66666666664 554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=90.79  E-value=0.56  Score=38.63  Aligned_cols=32  Identities=25%  Similarity=0.186  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       177 l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      ...++.-|.++..+++|++|...|+.++. .|.
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  140 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKVNLG  140 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence            45566677888888888888888888886 664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=90.74  E-value=0.67  Score=34.62  Aligned_cols=67  Identities=7%  Similarity=-0.002  Sum_probs=53.8

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ...+..+...+...+.|+.|...+++.+-.-+   +....++..|.++...++|++|..+|+.++. .|..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   79 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP---ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY   79 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence            34556777889999999999999988654322   2356778889999999999999999999997 6754

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=90.36  E-value=0.88  Score=41.22  Aligned_cols=89  Identities=11%  Similarity=0.042  Sum_probs=49.8

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...+....++..+..++.. +|+.   ...+..+...+...+.|+.|...+++.+-.-|   +....++..|.++..+++
T Consensus       228 ~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~  300 (368)
T 1fch_A          228 NLSGEYDKAVDCFTAALSV-RPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQP---GYIRSRYNLGISCINLGA  300 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTC
T ss_pred             HHcCCHHHHHHHHHHHHHh-CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHCCC
Confidence            3444455555556555544 3322   23455666666666777777666666432111   223455666666777777


Q ss_pred             HHHHHHHHHHhhc-CCc
Q 019008          193 FRKALELLHNVVT-APM  208 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~  208 (347)
                      |++|..+|+.++. .|.
T Consensus       301 ~~~A~~~~~~al~~~~~  317 (368)
T 1fch_A          301 HREAVEHFLEALNMQRK  317 (368)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            7777777766665 443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=90.26  E-value=0.78  Score=42.35  Aligned_cols=92  Identities=9%  Similarity=-0.128  Sum_probs=63.2

Q ss_pred             hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~  190 (347)
                      .....+....++..++.++.. +|+.   ...+..+...+...+.++.|...+++.+-.-|.   ....++..|.++...
T Consensus       246 ~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          246 VYYEQGLIDLAIDTYRRAIEL-QPHF---PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT---HADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHT-CSSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHc
Confidence            334456666677888777764 4432   335677788888888888888888876532221   233455678888888


Q ss_pred             hcHHHHHHHHHHhhc-CCcc
Q 019008          191 KRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       191 k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ++|++|..+|+.++. .|..
T Consensus       319 g~~~~A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTC
T ss_pred             CCHHHHHHHHHHHHhcCCCc
Confidence            888888888888886 5654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=90.02  E-value=0.82  Score=47.78  Aligned_cols=95  Identities=7%  Similarity=-0.004  Sum_probs=72.2

Q ss_pred             HHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHH
Q 019008          107 RYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI  186 (347)
Q Consensus       107 ~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i  186 (347)
                      .++..+...++...|+..++.|+.. +|+.   ...|..+-..+...+.++.|+..+++.+- ++  .+....++..|.+
T Consensus        82 nLg~~l~~~g~~~~A~~~~~kAl~l-~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~-l~--P~~~~a~~~L~~~  154 (723)
T 4gyw_A           82 NMGNTLKEMQDVQGALQCYTRAIQI-NPAF---ADAHSNLASIHKDSGNIPEAIASYRTALK-LK--PDFPDAYCNLAHC  154 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--SCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--CCChHHHhhhhhH
Confidence            3555566777777788888888754 6643   55778888999999999999999888653 22  1345567778899


Q ss_pred             HHhhhcHHHHHHHHHHhhc-CCc
Q 019008          187 FIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       187 ~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      +..+++|++|.+.|+.++. .|.
T Consensus       155 l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          155 LQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHhChh
Confidence            9999999999999999987 554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=90.00  E-value=0.97  Score=44.75  Aligned_cols=94  Identities=4%  Similarity=-0.231  Sum_probs=50.5

Q ss_pred             HHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHH
Q 019008          108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF  187 (347)
Q Consensus       108 ~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~  187 (347)
                      ++......++...|+..++.|+.. +|+.   ...+..+...+...+.|+.|...+++.+-.-|   +....++..|.++
T Consensus        63 lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~  135 (568)
T 2vsy_A           63 LGRVRWTQQRHAEAAVLLQQASDA-APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLLP---EEPYITAQLLNWR  135 (568)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Confidence            333344455555566666665544 3322   33455566666666666666666665432111   1233445556666


Q ss_pred             Hhh---hcHHHHHHHHHHhhc-CCc
Q 019008          188 IGQ---KRFRKALELLHNVVT-APM  208 (347)
Q Consensus       188 ~~~---k~y~~A~~~l~~ai~-~P~  208 (347)
                      ..+   +++++|.+.|+.++. .|.
T Consensus       136 ~~~~~~g~~~~A~~~~~~al~~~p~  160 (568)
T 2vsy_A          136 RRLCDWRALDVLSAQVRAAVAQGVG  160 (568)
T ss_dssp             HHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred             HHhhccccHHHHHHHHHHHHhcCCc
Confidence            666   666666666666665 444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=89.79  E-value=3.5  Score=37.67  Aligned_cols=94  Identities=10%  Similarity=-0.072  Sum_probs=69.6

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCC----CchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC--chhhHHHHHHHHH
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSST----EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL--PRDFFLYCYYGGM  185 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~----~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~--~~~~l~Y~yy~G~  185 (347)
                      ....+....++..++.++......+    ......+..+...+...+.++.|...+.+.+-..+.  +......++..|.
T Consensus       103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  182 (373)
T 1hz4_A          103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  182 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence            3345666678888888877664322    224556677888999999999999999875432221  2235566778899


Q ss_pred             HHHhhhcHHHHHHHHHHhhc
Q 019008          186 IFIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       186 i~~~~k~y~~A~~~l~~ai~  205 (347)
                      ++..+++|++|..+++.++.
T Consensus       183 ~~~~~g~~~~A~~~l~~a~~  202 (373)
T 1hz4_A          183 CSLARGDLDNARSQLNRLEN  202 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999986

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=89.68  E-value=3.3  Score=37.23  Aligned_cols=155  Identities=12%  Similarity=0.058  Sum_probs=95.0

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh---h
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG---Q  190 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~---~  190 (347)
                      ..+....+...++.|+. .+|...  +.++..+...+...+.++.|..++++.+-.-|..     +..|.|...+.   +
T Consensus       111 ~~~~~~~A~~~~~~al~-~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~a~~~~~~~  182 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLA-IEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR-----HHVYVTAALMEYYCS  182 (308)
T ss_dssp             HTTCHHHHHHHHHHHHT-SSSSCT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-----THHHHHHHHHHHHTS
T ss_pred             hcCCHHHHHHHHHHHHh-ccccCc--cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHc
Confidence            44556667888888876 455432  3377888899999999999999999876432222     22233455443   7


Q ss_pred             hcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh-------cchhHHHHHHH
Q 019008          191 KRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN-------FSQPYMELVNT  262 (347)
Q Consensus       191 k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~-------~~~pY~~la~a  262 (347)
                      +++++|...|+.++. .|..      .+++..++-. +...|+.. .    .-....+..+.       ...-+..++..
T Consensus       183 ~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~-~~~~g~~~-~----A~~~~~~al~~~~l~p~~~~~l~~~~~~~  250 (308)
T 2ond_A          183 KDKSVAFKIFELGLKKYGDI------PEYVLAYIDY-LSHLNEDN-N----TRVLFERVLTSGSLPPEKSGEIWARFLAF  250 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC------HHHHHHHHHH-HHTTCCHH-H----HHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHH-HHHCCCHH-H----HHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            999999999999997 7763      2233333322 23345543 1    11222233221       11123344443


Q ss_pred             H-hcCChHHHHHHHHhccccccccccc
Q 019008          263 Y-NTGKIVELETYVQTNREKFESDNNL  288 (347)
Q Consensus       263 ~-~~g~~~~~~~~~~~~~~~f~~D~n~  288 (347)
                      . ..|+.+....+.++..+.+.+|...
T Consensus       251 ~~~~g~~~~a~~~~~~a~~~~p~~~~~  277 (308)
T 2ond_A          251 ESNIGDLASILKVEKRRFTAFREEYEG  277 (308)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred             HHHcCCHHHHHHHHHHHHHHccccccc
Confidence            3 4688888888888888888876544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=89.63  E-value=0.38  Score=36.82  Aligned_cols=57  Identities=21%  Similarity=0.089  Sum_probs=42.1

Q ss_pred             cCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          153 AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       153 ~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+.|+.|.+.+.+.+-.-+...+....++..|.++..+++|++|..+|+.++. .|.+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   60 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH   60 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            46778888888876542111235678889999999999999999999999997 7875

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=89.58  E-value=1.7  Score=36.79  Aligned_cols=107  Identities=13%  Similarity=0.065  Sum_probs=72.4

Q ss_pred             hhcccccchHHHHHHHHhhCCCC---C--ch----hhHHHHHHHHHHhcCCchhhhhhhcccccc------cCCchhhHH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSST---E--HL----TTLHPEFLQLCLLAKCYKAGLSVLEDDIYE------INLPRDFFL  178 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~---~--~l----T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~------i~~~~~~l~  178 (347)
                      ..+....++...+.|+. ++|+.   .  ..    ...|...-..+..-+.|+.|+...++.+--      ++ + +...
T Consensus        23 ~~g~~eeAi~~Y~kAL~-l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-p-d~~~   99 (159)
T 2hr2_A           23 VAGEYDEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-Q-DEGK   99 (159)
T ss_dssp             HHTCHHHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-S-THHH
T ss_pred             HCCCHHHHHHHHHHHHh-hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-C-chHH
Confidence            44555557777777764 45541   0  11    226777778888899999999999887642      13 2 3445


Q ss_pred             HH----HHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHH
Q 019008          179 YC----YYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYI  223 (347)
Q Consensus       179 Y~----yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~i  223 (347)
                      -+    |-.|.++..+++|++|..+|+.++. .|....-.--++..|+.+
T Consensus       100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A          100 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            55    8999999999999999999999997 787432222233444443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=89.58  E-value=0.55  Score=43.55  Aligned_cols=94  Identities=11%  Similarity=-0.084  Sum_probs=63.1

Q ss_pred             HHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHH
Q 019008          108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF  187 (347)
Q Consensus       108 ~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~  187 (347)
                      +...+.+.+....+...+...+..   .+...  .+-.+..+|++.+.|+.|+..+.+.+. .+.+.....-+|+.|+++
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVA---GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGK-WPDKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCT---TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGG-CSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc---CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhc-cCCcccHHHHHHHHHHHH
Confidence            444444555555555554433221   23333  445556799999999999999986543 221222244688999999


Q ss_pred             HhhhcHHHHHHHHHHhhcCC
Q 019008          188 IGQKRFRKALELLHNVVTAP  207 (347)
Q Consensus       188 ~~~k~y~~A~~~l~~ai~~P  207 (347)
                      ..++++++|..+|+.++.-|
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTST
T ss_pred             HHCCCHHHHHHHHHHHhcCC
Confidence            99999999999999999655

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=89.54  E-value=0.88  Score=33.61  Aligned_cols=67  Identities=10%  Similarity=0.087  Sum_probs=52.9

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ...+..+...+...+.|+.|...+++.+-.-+   +....++..|.++...++|++|..+|+.++. .|..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   76 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence            34556778899999999999999988654222   2245677789999999999999999999997 6654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=89.32  E-value=2.3  Score=40.14  Aligned_cols=98  Identities=16%  Similarity=0.118  Sum_probs=64.8

Q ss_pred             chHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCc-hhhHHHHHHHHHHHHhhhcHHHHHHH
Q 019008          121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP-RDFFLYCYYGGMIFIGQKRFRKALEL  199 (347)
Q Consensus       121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~-~~~l~Y~yy~G~i~~~~k~y~~A~~~  199 (347)
                      ++..+..|+.. +|..   ...+..+-..+...+.|+.|...+.+.+---+.+ .....|+.||+......|++++|.++
T Consensus       319 A~~~~~~a~~~-~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~  394 (472)
T 4g1t_A          319 AVAHLKKADEA-NDNL---FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH  394 (472)
T ss_dssp             HHHHHHHHHHH-CTTT---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             HHHHHHHHhhc-CCch---hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            44455555443 4432   2234667889999999999999998865322222 22345677888888889999999999


Q ss_pred             HHHhhc-CCccchhHHHHHHHHHH
Q 019008          200 LHNVVT-APMSSINAIAVEAYKKY  222 (347)
Q Consensus       200 l~~ai~-~P~~~~s~i~vea~Kk~  222 (347)
                      |+.++. .|.+....-..++.+++
T Consensus       395 y~kal~i~~~~~~~~~~~~~l~~~  418 (472)
T 4g1t_A          395 FIEGVKINQKSREKEKMKDKLQKI  418 (472)
T ss_dssp             HHHHHHSCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHHHHHHHH
Confidence            999998 66653333344444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=88.79  E-value=0.99  Score=39.82  Aligned_cols=89  Identities=7%  Similarity=-0.125  Sum_probs=66.7

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...++..++.++.. +|+.   ...+..+...+...+.++.|...+++.+-.-|   +....++..|.++...++|
T Consensus        33 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~  105 (327)
T 3cv0_A           33 KLANLAEAALAFEAVCQA-APER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEHNA  105 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred             HhccHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCCH
Confidence            344555577777777665 4432   44566788999999999999999988654222   2355677889999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|...|+.++. .|..
T Consensus       106 ~~A~~~~~~~~~~~~~~  122 (327)
T 3cv0_A          106 NAALASLRAWLLSQPQY  122 (327)
T ss_dssp             HHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            999999999997 6653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=88.56  E-value=1.9  Score=33.85  Aligned_cols=89  Identities=15%  Similarity=-0.030  Sum_probs=64.2

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      ....+....++..+..++.. +|..   ...+..+...+...+.|+.|...+++.+-.-| ........+-.|.++..++
T Consensus        57 ~~~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~  131 (166)
T 1a17_A           57 YLRTECYGYALGDATRAIEL-DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQK  131 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh-Cccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Confidence            33456666788888888766 4432   44667788899999999999999998654323 2223344455666788999


Q ss_pred             cHHHHHHHHHHhhc
Q 019008          192 RFRKALELLHNVVT  205 (347)
Q Consensus       192 ~y~~A~~~l~~ai~  205 (347)
                      +|++|...++.+..
T Consensus       132 ~~~~A~~~~~~~~~  145 (166)
T 1a17_A          132 AFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccchHH
Confidence            99999999988764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=88.28  E-value=2.7  Score=31.16  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          176 FFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       176 ~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ....+|..|.++..+++|++|..+|+.++. .|..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   40 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDY   40 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            345678889999999999999999999997 7764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=88.22  E-value=1.3  Score=41.93  Aligned_cols=89  Identities=8%  Similarity=-0.057  Sum_probs=70.6

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      ....+....|+..+..++.. +|+    ...+..+...+...+.|+.|...+++.+-.-|   +....++..|.++..++
T Consensus        16 ~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g   87 (514)
T 2gw1_A           16 FFRNKKYDDAIKYYNWALEL-KED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKP---DYSKVLLRRASANEGLG   87 (514)
T ss_dssp             HHHTSCHHHHHHHHHHHHHH-CCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTT
T ss_pred             HHHhccHHHHHHHHHHHHhc-Ccc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHh
Confidence            34556677788888888776 453    55778889999999999999999998654222   23467788999999999


Q ss_pred             cHHHHHHHHHHhhc-CCc
Q 019008          192 RFRKALELLHNVVT-APM  208 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~  208 (347)
                      +|++|...|+.++. .|.
T Consensus        88 ~~~~A~~~~~~~~~~~~~  105 (514)
T 2gw1_A           88 KFADAMFDLSVLSLNGDF  105 (514)
T ss_dssp             CHHHHHHHHHHHHHSSSC
T ss_pred             hHHHHHHHHHHHHhcCCC
Confidence            99999999999997 553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=87.44  E-value=0.99  Score=38.16  Aligned_cols=54  Identities=13%  Similarity=0.194  Sum_probs=40.6

Q ss_pred             chhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh-----------cHHHHHHHHHHhhc-CCccchh
Q 019008          156 YKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK-----------RFRKALELLHNVVT-APMSSIN  212 (347)
Q Consensus       156 y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k-----------~y~~A~~~l~~ai~-~P~~~~s  212 (347)
                      ++.|...+++.|- +++  +...-+|..|.+|..++           +|++|..+|+.|+. -|.+...
T Consensus        62 ~~eAi~~le~AL~-ldP--~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y  127 (158)
T 1zu2_A           62 IQEAITKFEEALL-IDP--KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY  127 (158)
T ss_dssp             HHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHH-hCc--CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence            6678888877653 221  24556788999998774           99999999999998 8876433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=86.72  E-value=1.9  Score=32.66  Aligned_cols=64  Identities=16%  Similarity=0.110  Sum_probs=46.7

Q ss_pred             HHHHHHhcCCchhhhhhhcccccccC----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          146 FLQLCLLAKCYKAGLSVLEDDIYEIN----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       146 ll~l~l~~~~y~~Al~~l~~~i~~i~----~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      +-+.++..+.|..|..-+...+-..+    ........+++-|.++..++++++|..+++.++. .|.+
T Consensus        11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~   79 (104)
T 2v5f_A           11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (104)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence            44677777777777777766543221    1123455667889999999999999999999997 8875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=86.50  E-value=5.3  Score=35.73  Aligned_cols=80  Identities=13%  Similarity=0.039  Sum_probs=62.2

Q ss_pred             HHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 019008          123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHN  202 (347)
Q Consensus       123 ~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~  202 (347)
                      ..+...+.++.|+.   ...+..+...++..+.++.|...+.+.+-.-|   +....++..|.++..++++++|...|+.
T Consensus       103 ~~l~~~l~~~lp~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~~~~~g~~~~A~~~l~~  176 (287)
T 3qou_A          103 EAIRALLDXVLPRE---EELXAQQAMQLMQESNYTDALPLLXDAWQLSN---QNGEIGLLLAETLIALNRSEDAEAVLXT  176 (287)
T ss_dssp             HHHHHHHHHHSCCH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCc---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---cchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            45666666766643   34567788899999999999999988654222   2356788889999999999999999999


Q ss_pred             hhc-CCc
Q 019008          203 VVT-APM  208 (347)
Q Consensus       203 ai~-~P~  208 (347)
                      ++. .|.
T Consensus       177 ~~~~~p~  183 (287)
T 3qou_A          177 IPLQDQD  183 (287)
T ss_dssp             SCGGGCS
T ss_pred             Cchhhcc
Confidence            987 673

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=86.29  E-value=1.4  Score=36.02  Aligned_cols=80  Identities=6%  Similarity=-0.213  Sum_probs=60.5

Q ss_pred             chHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHH
Q 019008          121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL  200 (347)
Q Consensus       121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l  200 (347)
                      ++..++.|+.. +|+.   ...|..+...+...+.++.|...+.+-+-.-|.+ ....-++..|.++..++++++|...|
T Consensus        93 a~~~~~~al~~-~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           93 ELKRLEQELAA-NPDN---FELACELAVQYNQVGRDEEALELLWNILKVNLGA-QDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT-TTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            57778887754 6643   5677889999999999999999998765422222 12234556689999999999999999


Q ss_pred             HHhhc
Q 019008          201 HNVVT  205 (347)
Q Consensus       201 ~~ai~  205 (347)
                      +.++.
T Consensus       168 ~~al~  172 (176)
T 2r5s_A          168 RRQLY  172 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98874

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=86.22  E-value=1.5  Score=36.53  Aligned_cols=68  Identities=9%  Similarity=-0.040  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCch---h----------hHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPR---D----------FFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP  207 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~---~----------~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P  207 (347)
                      .+..+-..+...+.|+.|...+++.+--.+...   .          ....++..|.++..+++|++|..+|+.++. .|
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  119 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK  119 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            345567788999999999999988654322211   0          136778899999999999999999999997 67


Q ss_pred             cc
Q 019008          208 MS  209 (347)
Q Consensus       208 ~~  209 (347)
                      ..
T Consensus       120 ~~  121 (198)
T 2fbn_A          120 NN  121 (198)
T ss_dssp             TC
T ss_pred             cc
Confidence            54

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=86.08  E-value=1.1  Score=36.08  Aligned_cols=66  Identities=12%  Similarity=0.087  Sum_probs=49.2

Q ss_pred             HHHHHHHHhcCCchhhhhhhccccccc--------CC-------chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008          144 PEFLQLCLLAKCYKAGLSVLEDDIYEI--------NL-------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP  207 (347)
Q Consensus       144 ~~ll~l~l~~~~y~~Al~~l~~~i~~i--------~~-------~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P  207 (347)
                      ...-..+...+.|+.|+..+.+.+--.        +.       .......++..|.++..+++|++|...++.++. -|
T Consensus        15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p   94 (162)
T 3rkv_A           15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE   94 (162)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence            444566777888888888777755421        10       223456788899999999999999999999998 77


Q ss_pred             cc
Q 019008          208 MS  209 (347)
Q Consensus       208 ~~  209 (347)
                      .+
T Consensus        95 ~~   96 (162)
T 3rkv_A           95 TN   96 (162)
T ss_dssp             TC
T ss_pred             cc
Confidence            64

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=85.50  E-value=3.9  Score=38.98  Aligned_cols=99  Identities=8%  Similarity=-0.063  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhH
Q 019008           98 PEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFF  177 (347)
Q Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l  177 (347)
                      +..+..+...    ....++...|+..++.++.. +|+.   ...+..+...+...+.|+.|+..+++.+---|   +..
T Consensus        25 a~~~~~~g~~----~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~   93 (537)
T 3fp2_A           25 AVQLKNRGNH----FFTAKNFNEAIKYYQYAIEL-DPNE---PVFYSNISACYISTGDLEKVIEFTTKALEIKP---DHS   93 (537)
T ss_dssp             HHHHHHHHHH----HHHTTCCC-CHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCH
T ss_pred             HHHHHHHHHH----HHHhccHHHHHHHHHHHHhh-CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chH
Confidence            3444444443    33556777799999988875 5543   46778889999999999999999998654222   345


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          178 LYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       178 ~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      ..++..|.++..+++|++|...|+ ++. .|.
T Consensus        94 ~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~  124 (537)
T 3fp2_A           94 KALLRRASANESLGNFTDAMFDLS-VLSLNGD  124 (537)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHH-HHC----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCC
Confidence            678889999999999999999997 664 665

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=85.44  E-value=1.3  Score=39.75  Aligned_cols=65  Identities=11%  Similarity=0.044  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+..+...+...+.|+.|...+++.+-.-|   +...+++..|.++..+++|++|...|+.++. .|.+
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            445667888999999999999998765322   2467888999999999999999999999997 7764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.58  E-value=3.3  Score=45.33  Aligned_cols=59  Identities=20%  Similarity=0.327  Sum_probs=44.9

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~  205 (347)
                      +..-..+++.|+..+.|+.|..++.  ..  + .+...+  |..|+++...++|++|.++|+.|-.
T Consensus       812 ~~~~~~l~~~l~~~~~~~~~~~l~~--~~--~-~~~~~~--yl~g~~~L~~ge~~~A~~~F~kaa~  870 (1139)
T 4fhn_B          812 NDLVTELVEKLFLFKQYNACMQLIG--WL--N-SDPIAV--YLKALIYLKSKEAVKAVRCFKTTSL  870 (1139)
T ss_dssp             SCHHHHHHHHHHHHSCTTHHHHHHH--HS--C-CCHHHH--HHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred             chhHHHHHHHHHHhhhHHHHHHHhh--hc--c-CCcHHH--HHHHHHHHhcCCHHHHHHHHHHHhh
Confidence            4455678899999999999887653  11  1 122223  7899999999999999999999864

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=84.57  E-value=25  Score=33.91  Aligned_cols=84  Identities=11%  Similarity=0.049  Sum_probs=63.2

Q ss_pred             cchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhh-HHHHHHHHHHHHhhhcHHHHHH
Q 019008          120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDF-FLYCYYGGMIFIGQKRFRKALE  198 (347)
Q Consensus       120 ~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~-l~Y~yy~G~i~~~~k~y~~A~~  198 (347)
                      .++..+..|+..++|..   ..+|..+.......+.++.|..++++.+- ++ +.+. ..|.-| |.+...++++++|..
T Consensus       304 ~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~~~-~~~~~~~~~~~~A~~  377 (530)
T 2ooe_A          304 EAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLA-IE-DIDPTLVYIQY-MKFARRAEGIKSGRM  377 (530)
T ss_dssp             HHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SS-SSCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhC-cc-ccCchHHHHHH-HHHHHHhcCHHHHHH
Confidence            57888999987667754   56788888999999999999999998654 33 2222 233333 556678999999999


Q ss_pred             HHHHhhcCCcc
Q 019008          199 LLHNVVTAPMS  209 (347)
Q Consensus       199 ~l~~ai~~P~~  209 (347)
                      .|+.|+..|..
T Consensus       378 ~~~~Al~~~~~  388 (530)
T 2ooe_A          378 IFKKAREDART  388 (530)
T ss_dssp             HHHHHHTCTTC
T ss_pred             HHHHHHhccCC
Confidence            99999986543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=84.32  E-value=4  Score=40.49  Aligned_cols=91  Identities=7%  Similarity=-0.061  Sum_probs=67.1

Q ss_pred             hhcccccchHHHHHHHHhhCC----C-CCchhhHHHHHHHHHHhcCCchhhhhhhcccccc----c-CCchhhHHHHHHH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQS----S-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE----I-NLPRDFFLYCYYG  183 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~----~-~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~----i-~~~~~~l~Y~yy~  183 (347)
                      ..+....|+..++.++.....    + +.+++ ..+.+...|...+.|+.|+++..+.+--    . +..-+.+.-+.-.
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~-~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLR-LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            345555667777777665443    2 23334 4467888999999999999998875421    1 2356788888999


Q ss_pred             HHHHHhhhcHHHHHHHHHHhhc
Q 019008          184 GMIFIGQKRFRKALELLHNVVT  205 (347)
Q Consensus       184 G~i~~~~k~y~~A~~~l~~ai~  205 (347)
                      |.+|..+++|++|..+|+.|+.
T Consensus       400 a~~~~~~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          400 GLTNWHAGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999984

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=83.50  E-value=1.8  Score=35.22  Aligned_cols=63  Identities=16%  Similarity=0.258  Sum_probs=46.6

Q ss_pred             HHHHHHhcCCchh---hhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          146 FLQLCLLAKCYKA---GLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       146 ll~l~l~~~~y~~---Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      +....+++++...   +..+|..-. .-..+..--.|.||.|.-+..+|+|++|..+++.++. -|.+
T Consensus        41 yAw~Lv~S~~~~d~~~GI~lLe~l~-~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n  107 (126)
T 1nzn_A           41 YAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  107 (126)
T ss_dssp             HHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            4445555666555   666666532 2222446678999999999999999999999999997 8875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=83.42  E-value=10  Score=35.71  Aligned_cols=67  Identities=6%  Similarity=0.020  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccC-------------CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CC
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEIN-------------LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP  207 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~-------------~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P  207 (347)
                      .+..+-..+...+.|+.|+..+.+.+-..+             ........++..|.++..+++|++|..+++.|+. .|
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            356677888999999999999888764111             1234567788889999999999999999999997 56


Q ss_pred             c
Q 019008          208 M  208 (347)
Q Consensus       208 ~  208 (347)
                      .
T Consensus       305 ~  305 (370)
T 1ihg_A          305 S  305 (370)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=83.20  E-value=3.9  Score=35.56  Aligned_cols=16  Identities=13%  Similarity=0.048  Sum_probs=9.1

Q ss_pred             ChhhHHHHHHHHhhcc
Q 019008          326 SSKEAEMHVLQMVTFE  341 (347)
Q Consensus       326 s~~eaE~~v~~mI~~G  341 (347)
                      +.++|.....++++-|
T Consensus       237 ~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          237 NEKQAIENFKKGCKLG  252 (273)
T ss_dssp             CSTTHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            4556666666655544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=82.77  E-value=10  Score=36.32  Aligned_cols=65  Identities=11%  Similarity=0.069  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      .-.|..+.-..+..+.++.|...+++.+- .+ + .. ..+...|.++...|+|++|.+.|++|++ -|.
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln-~-s~-~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGID-LE-M-SW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-C-CH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cC-C-CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            44555666667778999999999998764 23 2 23 4558889999999999999999999998 786

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=82.72  E-value=3.2  Score=30.94  Aligned_cols=44  Identities=9%  Similarity=0.096  Sum_probs=37.1

Q ss_pred             HHHHHHHHhhhh---cccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008          300 KRNIQRLTQTYL---TLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       300 r~~I~~L~~~Ys---~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~  344 (347)
                      ...|.++-+...   +++..+||++++++ ...+...+.+|.++|.+.
T Consensus        12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~~Le~~G~I~   58 (81)
T 1qbj_A           12 EQRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQ   58 (81)
T ss_dssp             HHHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence            445666666777   89999999999998 678999999999999874

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=82.58  E-value=2.4  Score=39.84  Aligned_cols=68  Identities=9%  Similarity=0.021  Sum_probs=49.5

Q ss_pred             CChHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHhhhh----cccHHHHHHHcCCCChhhHHHHHHH
Q 019008          266 GKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYL----TLSLQDIANTVQLNSSKEAEMHVLQ  336 (347)
Q Consensus       266 g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~r~~I~~L~~~Ys----~IsL~dIa~~l~l~s~~eaE~~v~~  336 (347)
                      ||..+|-+.+......+..   --++..-+..+++..++.++++|.    +++++++++.++.+|++|++.++..
T Consensus       177 gNY~rFFrL~~~~~~pyL~---aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~~  248 (316)
T 3t5v_A          177 NFYARFFQLMQSPSLPLLM---GFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNY  248 (316)
T ss_dssp             CCHHHHHHHHTCTTSCHHH---HHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             chHHHHHHHHhccCCChHH---HHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence            5666666555532111111   134555577899999999999995    8999999999999999999988753

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=82.52  E-value=4.5  Score=39.83  Aligned_cols=89  Identities=6%  Similarity=-0.039  Sum_probs=70.0

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...|+..++.|+.. +|+.   ...+..+...+...+.|+.|...+++.+---|   +....++..|.++..+++|
T Consensus        35 ~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~  107 (568)
T 2vsy_A           35 GMGDTTAGEMAVQRGLAL-HPGH---PEAVARLGRVRWTQQRHAEAAVLLQQASDAAP---EHPGIALWLGHALEDAGQA  107 (568)
T ss_dssp             HHTCHHHHHHHHHHHHTT-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCH
T ss_pred             HcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCH
Confidence            445666688888887765 5543   45678889999999999999999998654222   2356778889999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|.++|+.++. .|..
T Consensus       108 ~~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A          108 EAAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            999999999997 7864

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=81.99  E-value=19  Score=32.49  Aligned_cols=91  Identities=11%  Similarity=0.070  Sum_probs=62.3

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCch-hhHHHHHHHHHHhcCCchhhhhhhcccccccC---CchhhHHHHHHHHHHHHh
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHL-TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~l-T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~---~~~~~l~Y~yy~G~i~~~  189 (347)
                      ..+.+..+...++.++.. .+.+... ...+..+.+.++..+.++.|...+++.+-..+   ...+..+.++..|.++..
T Consensus       227 ~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~  305 (373)
T 1hz4_A          227 MTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ  305 (373)
T ss_dssp             HTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence            445555566666665432 2222122 23456778899999999999999887543211   123455677888999999


Q ss_pred             hhcHHHHHHHHHHhhc
Q 019008          190 QKRFRKALELLHNVVT  205 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~  205 (347)
                      ++++++|..+|+.++.
T Consensus       306 ~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          306 AGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HTCHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHH
Confidence            9999999999999996

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=81.51  E-value=2  Score=41.00  Aligned_cols=108  Identities=13%  Similarity=0.082  Sum_probs=83.3

Q ss_pred             hhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCC-chhhhhhhcccccccCC
Q 019008           94 IRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKC-YKAGLSVLEDDIYEINL  172 (347)
Q Consensus        94 lr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~-y~~Al~~l~~~i~~i~~  172 (347)
                      +.+-|+ +..........+...+....++..+..|+. ++|+.   ...+..+-..+...+. |+.|+..+++.+---| 
T Consensus        90 i~~~p~-~~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P~~---~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-  163 (382)
T 2h6f_A           90 IIYSDK-FRDVYDYFRAVLQRDERSERAFKLTRDAIE-LNAAN---YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-  163 (382)
T ss_dssp             ECCCHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-
T ss_pred             hhCChh-hHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCccC---HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-
Confidence            445454 455555566677778888889999988774 58754   4566777788888886 9999999999765222 


Q ss_pred             chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       173 ~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                        .....+++.|.++..+++|++|..+|+.++. -|.+
T Consensus       164 --~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          164 --KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             --TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             --CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence              3466788899999999999999999999997 8875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=81.31  E-value=3.4  Score=38.88  Aligned_cols=90  Identities=14%  Similarity=0.170  Sum_probs=57.1

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHH----HHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEF----LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~l----l~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~  189 (347)
                      ..+....++..++.|+. ++|...   ..+..+    .++....+.++.|...+.+.+-.-|   +....++..|.+|..
T Consensus       187 ~~~~~~~al~~~~~al~-l~p~~~---~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~---~~~~~~~~lg~~~~~  259 (472)
T 4g1t_A          187 NWPPSQNAIDPLRQAIR-LNPDNQ---YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP---GVTDVLRSAAKFYRR  259 (472)
T ss_dssp             HSCCCCCTHHHHHHHHH-HCSSCH---HHHHHHHHHHHHCC------CHHHHHHHHHHHHCS---SCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhh-cCCcch---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHH
Confidence            34555667888888875 455432   222222    2334455778889888887543222   234456778999999


Q ss_pred             hhcHHHHHHHHHHhhc-CCccc
Q 019008          190 QKRFRKALELLHNVVT-APMSS  210 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~-~P~~~  210 (347)
                      .++|++|...|+.++. .|...
T Consensus       260 ~~~~~~A~~~~~~al~~~p~~~  281 (472)
T 4g1t_A          260 KDEPDKAIELLKKALEYIPNNA  281 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCH
T ss_pred             cCchHHHHHHHHHHHHhCCChH
Confidence            9999999999999997 88753

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=81.05  E-value=2.4  Score=31.11  Aligned_cols=43  Identities=9%  Similarity=0.089  Sum_probs=35.7

Q ss_pred             HHHHHHHhhhh---cccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008          301 RNIQRLTQTYL---TLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       301 ~~I~~L~~~Ys---~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~  344 (347)
                      +.|..+-+.-.   +++..+||++++++ ...+...+.+|.++|.+.
T Consensus        17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~~L~~~G~I~   62 (77)
T 1qgp_A           17 QRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQ   62 (77)
T ss_dssp             HHHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHHHHHHHTSEE
T ss_pred             HHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence            45555566666   89999999999998 678999999999999863

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=80.88  E-value=12  Score=36.30  Aligned_cols=92  Identities=9%  Similarity=-0.022  Sum_probs=64.2

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      ...++...+...+..|+.. +|..  .+.++..+.+.....+.++.|..++++.+-..+  ...-.|.-.+.+-+...|+
T Consensus       332 ~~~g~~~~A~~~~~~al~~-~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~~~~~~~a~~~~~~~~~  406 (530)
T 2ooe_A          332 ESRMKYEKVHSIYNRLLAI-EDID--PTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKD  406 (530)
T ss_dssp             HHTTCHHHHHHHHHHHHHS-SSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCTHHHHHHHHHHHHHTCC
T ss_pred             HhcCCHHHHHHHHHHHhCc-cccC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--CchHHHHHHHHHHHHHcCC
Confidence            3455666677788887764 5532  245788888888889999999999998764322  2223333333344557899


Q ss_pred             HHHHHHHHHHhhc-CCcc
Q 019008          193 FRKALELLHNVVT-APMS  209 (347)
Q Consensus       193 y~~A~~~l~~ai~-~P~~  209 (347)
                      +++|...|+.++. .|.+
T Consensus       407 ~~~A~~~~e~al~~~p~~  424 (530)
T 2ooe_A          407 KSVAFKIFELGLKKYGDI  424 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHCCCC
Confidence            9999999999997 7754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=80.35  E-value=2.9  Score=38.58  Aligned_cols=64  Identities=9%  Similarity=0.175  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhcCC
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP  207 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~~P  207 (347)
                      +.++..+..+....+.|+.|...++.-++.  .+.+.  -.|-.|.++...++|++|...|+.++..|
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~  165 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP  165 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence            556777889999999999999999987662  24444  67889999999999999999999888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	347
d1ufma_	84	COP9 signalosome complex subunit 4, GSN4 {Mouse (M	98.57
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.22
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.26
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.26
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.01
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.91
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.83
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.59
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	95.44
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	94.95
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	94.87
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.84
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	94.24
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	94.1
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.02
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	93.83
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	93.78
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	92.96
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	92.34
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	92.25
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	91.77
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	91.72
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	91.57
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	91.51
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	90.97
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	90.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	90.41
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	90.3
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.69
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	89.12
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.0
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	88.68
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	88.56
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	88.01
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	86.37
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	86.06
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	85.96
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	85.54
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	83.94
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	83.17
d1rz4a1	85	Eukaryotic translation initiation factor 3 subunit	82.46
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	80.96
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	80.58

>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=7.8e-09  Score=77.93  Aligned_cols=57  Identities=14%  Similarity=0.209  Sum_probs=51.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccc
Q 019008          286 NNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVN  343 (347)
Q Consensus       286 ~n~gLV~~~~~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~  343 (347)
                      |+.|-..-+.++++.++|++++++|++|+++++|+.++++ .+++|.+|.+||.+|.+
T Consensus         4 ~~~~~~t~L~~~i~Ehni~~is~~Y~~Isl~~la~~l~l~-~~evE~~l~~mI~~~~i   60 (84)
T d1ufma_           4 GSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRM   60 (84)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSS
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhceeeHHHHHHHHCCC-HHHHHHHHHHHHhcCeE
Confidence            4555555577899999999999999999999999999996 89999999999999986

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.0032  Score=55.40  Aligned_cols=172  Identities=9%  Similarity=-0.009  Sum_probs=107.4

Q ss_pred             HHhHhhhcccccchHHHHHHHHhhCCCCC--chhhHHHHHHHHHHh-cCCchhhhhhhccccc--cc-CCchhhHHHHHH
Q 019008          109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLL-AKCYKAGLSVLEDDIY--EI-NLPRDFFLYCYY  182 (347)
Q Consensus       109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~--~lT~~H~~ll~l~l~-~~~y~~Al~~l~~~i~--~i-~~~~~~l~Y~yy  182 (347)
                      +.+....+.+-.++..++.|+.-+...+.  .....+..+...+.. .+.|+.|...+.+.+-  .. +.+......+.-
T Consensus        84 g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~  163 (290)
T d1qqea_          84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK  163 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHH
Confidence            33344566777789999988877654432  223444445555655 5899999999987542  21 234556677777


Q ss_pred             HHHHHHhhhcHHHHHHHHHHhhc-CCccchhHH-HHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh--------c
Q 019008          183 GGMIFIGQKRFRKALELLHNVVT-APMSSINAI-AVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN--------F  252 (347)
Q Consensus       183 ~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i-~vea~Kk~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~--------~  252 (347)
                      .|.++..+++|++|.+.|+.++. .|....... ....+-...++. +..|+.. ..    .....+..+.        .
T Consensus       164 la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~d~~-~A----~~~~~~~~~~~~~~~~sre  237 (290)
T d1qqea_         164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ-LAATDAV-AA----ARTLQEGQSEDPNFADSRE  237 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH-HHTTCHH-HH----HHHHHGGGCC---------
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHH-HHhccHH-HH----HHHHHHHHHhCCCccchHH
Confidence            89999999999999999999997 555422211 112222333333 4455544 11    1111121111        0


Q ss_pred             chhHHHHHHHHhcCChHHHHHHHHhccccccccc
Q 019008          253 SQPYMELVNTYNTGKIVELETYVQTNREKFESDN  286 (347)
Q Consensus       253 ~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~  286 (347)
                      ..-..++..++..+|.++|.+.+..+.....-|.
T Consensus       238 ~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence            1234568889999999999999998877777674

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.014  Score=44.30  Aligned_cols=92  Identities=11%  Similarity=-0.011  Sum_probs=73.7

Q ss_pred             hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~  190 (347)
                      .+...++...|+..+..|+.. +|+.   ..+|..+...++..+.|+.|+..+++.+- ++ | +...-+|..|.++..+
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~-p-~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKL-DPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVD-LK-P-DWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHhc-CCcc---hhhhhcccccccccccccccchhhhhHHH-hc-c-chhhHHHHHHHHHHHc
Confidence            344566677788988888854 7654   45788889999999999999999999764 33 2 2345678999999999


Q ss_pred             hcHHHHHHHHHHhhc-CCcc
Q 019008          191 KRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       191 k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ++|++|..+|+.++. -|.+
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTC
T ss_pred             cCHHHHHHHHHHHHHhCCCC
Confidence            999999999999997 7875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.016  Score=46.91  Aligned_cols=91  Identities=9%  Similarity=-0.001  Sum_probs=66.6

Q ss_pred             cccccchHHHHHHHHhhCCCCC-----------chhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHH
Q 019008          116 EAPIRGVGPMLTAIRKIQSSTE-----------HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGG  184 (347)
Q Consensus       116 ~~~~~~i~~L~~Ai~r~~~~~~-----------~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G  184 (347)
                      +....|+...+.|+..++..+.           ....+|..+..+++.-+.|+.|+..+++.|---|   .....+|..|
T Consensus        27 ~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p---~~~~a~~~~g  103 (170)
T d1p5qa1          27 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS---NNEKGLSRRG  103 (170)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc---cchhhhHHHH
Confidence            3334455555555555443221           1235666778889999999999999998775322   2356789999


Q ss_pred             HHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          185 MIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       185 ~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .++..+++|++|..+|+.|+. .|.+
T Consensus       104 ~~~~~~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1         104 EAHLAVNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999998 8875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.02  Score=44.17  Aligned_cols=85  Identities=14%  Similarity=0.170  Sum_probs=61.0

Q ss_pred             cchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCc---hhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHH
Q 019008          120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCY---KAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKA  196 (347)
Q Consensus       120 ~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y---~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A  196 (347)
                      ++....+.|+. .+|..   ...+..+....++++..   +.|..++.+.+- .++..+....+|+.|.+|..+|+|++|
T Consensus        17 ~Ae~~Y~~aL~-~~p~~---~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-~~~~~~~~~~~~~Lg~~y~~~g~~~~A   91 (122)
T d1nzna_          17 KFEKKFQSEKA-AGSVS---KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNYRLKEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHH-HSCCC---HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHh-hCCCC---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHHHHHHHhhhHHH
Confidence            35566666655 46643   33445566666665554   569999987553 333445567889999999999999999


Q ss_pred             HHHHHHhhc-CCcc
Q 019008          197 LELLHNVVT-APMS  209 (347)
Q Consensus       197 ~~~l~~ai~-~P~~  209 (347)
                      ..+|+.++. -|.+
T Consensus        92 ~~~~~~aL~~~P~~  105 (122)
T d1nzna_          92 LKYVRGLLQTEPQN  105 (122)
T ss_dssp             HHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhCcCC
Confidence            999999997 8975

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.017  Score=46.61  Aligned_cols=92  Identities=9%  Similarity=0.032  Sum_probs=72.8

Q ss_pred             HhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHh
Q 019008          110 DQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       110 ~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~  189 (347)
                      ..+...+..-.|+..+..|+.. +|..   ..+|..+-..++..+.|+.|+..+.+.+- +++  ++...+|..|.+|..
T Consensus        12 n~~~~~g~~~~Ai~~~~kal~~-~p~~---~~~~~~lg~~y~~~~~~~~Ai~~~~~al~-l~p--~~~~a~~~lg~~~~~   84 (201)
T d2c2la1          12 NRLFVGRKYPEAAACYGRAITR-NPLV---AVYYTNRALCYLKMQQPEQALADCRRALE-LDG--QSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHhHHHHHhhhhhhhhhhHHHHHHHH-hCC--CcHHHHHHHHHHHHH
Confidence            3344556666788888888865 6643   56788899999999999999999999864 332  345567889999999


Q ss_pred             hhcHHHHHHHHHHhhc-CCc
Q 019008          190 QKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~-~P~  208 (347)
                      +++|++|...|+.|+. .|.
T Consensus        85 l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          85 MESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999996 664

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.91  E-value=0.017  Score=43.49  Aligned_cols=85  Identities=8%  Similarity=-0.106  Sum_probs=65.0

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhc
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR  192 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~  192 (347)
                      .+.+....|+..++.++.. +|..   ...+..+-..+...+.++.|...+++.+---|   +....++-.|.+|..+++
T Consensus        27 ~~~g~~~~A~~~~~~al~~-~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          27 LKLANLAEAALAFEAVCQK-EPER---EEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-STTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHhhhccc-cccc---chhhhhhhhhhhhhhhHHHhhccccccccccc---ccccchHHHHHHHHHCCC
Confidence            3456667788888888765 5543   45677888889999999999999988654322   345677889999999999


Q ss_pred             HHHHHHHHHHhh
Q 019008          193 FRKALELLHNVV  204 (347)
Q Consensus       193 y~~A~~~l~~ai  204 (347)
                      |++|.++|+..+
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.038  Score=43.69  Aligned_cols=89  Identities=18%  Similarity=0.178  Sum_probs=70.6

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..++...|+..+..|+. ++|+.   ...|..+-.+++..+.++.|...+++.+- ++ + ....-++..|.++..+++|
T Consensus        22 ~~~~y~~A~~~~~~al~-~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~kal~-~~-p-~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          22 KAKDYENAIKFYSQAIE-LNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIE-LD-K-KYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HTTCHHHHHHHHHHHHH-HSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHTTCH
T ss_pred             HcCCHHHHHHHhhhccc-cchhh---hhhhhhhHHHHHhccccchHHHHHHHHHH-Hc-c-cchHHHHHHHHHHHHcCCH
Confidence            44555567788877775 46653   67888999999999999999999998763 22 2 2345578899999999999


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|.+
T Consensus        95 ~eA~~~~~~a~~~~p~~  111 (159)
T d1a17a_          95 RAALRDYETVVKVKPHD  111 (159)
T ss_dssp             HHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            999999999998 7764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.59  E-value=0.0089  Score=45.12  Aligned_cols=62  Identities=11%  Similarity=-0.115  Sum_probs=51.7

Q ss_pred             HHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          145 EFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       145 ~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..-..+...+.|+.|...+++.+-.-|   +....++..|.++..+++|++|..+|+.|+. .|..
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEP---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccccc---ccchhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            345678899999999999999764322   3467788899999999999999999999998 8874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.44  E-value=0.067  Score=42.23  Aligned_cols=66  Identities=14%  Similarity=0.046  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       141 ~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+|..+...+..-+.|+.|+....+.+- +++  ....-+|-.|+++..+++|++|..+|+.++. .|.+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~-~~p--~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLK-IDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccc-ccc--hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4667788889999999999999988754 332  2346788999999999999999999999997 8875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=94.95  E-value=0.12  Score=41.18  Aligned_cols=68  Identities=12%  Similarity=0.083  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccc
Q 019008          140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS  210 (347)
Q Consensus       140 T~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~  210 (347)
                      ..++..+..++..-+.|+.|+...++.+- +++  ....=+|..|.++..+++|++|..+|+.++. -|.+.
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~-l~p--~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~  132 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALG-LDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  132 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhh-ccc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            44556677788999999999999888653 332  2344577889999999999999999999997 88763

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.32  Score=40.83  Aligned_cols=96  Identities=11%  Similarity=0.045  Sum_probs=68.9

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccc---cCCchhhHHHHHHHHHHHHh
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMIFIG  189 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~---i~~~~~~l~Y~yy~G~i~~~  189 (347)
                      ...+.+..+...++.++......+.........+.+.++..+.++.|...+++.+..   .....+....++..|.+|..
T Consensus       224 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  303 (366)
T d1hz4a_         224 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ  303 (366)
T ss_dssp             HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence            344555556666665554433333444455666789999999999999999876432   12245667788899999999


Q ss_pred             hhcHHHHHHHHHHhhc-CCc
Q 019008          190 QKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       190 ~k~y~~A~~~l~~ai~-~P~  208 (347)
                      +|+|++|.+.|+.|+. ++.
T Consensus       304 ~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         304 AGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhh
Confidence            9999999999999997 554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.024  Score=41.40  Aligned_cols=64  Identities=16%  Similarity=0.101  Sum_probs=50.2

Q ss_pred             HHHHHhcCCchhhhhhhcccccccC----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccc
Q 019008          147 LQLCLLAKCYKAGLSVLEDDIYEIN----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS  210 (347)
Q Consensus       147 l~l~l~~~~y~~Al~~l~~~i~~i~----~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~  210 (347)
                      =+.+...+.|+.|.+.+.+.+--.+    ...+....+++.|.++..+++|++|...++.++. -|.+.
T Consensus        12 G~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_          12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            3678888999998888877543111    1234567788899999999999999999999998 88763

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.11  Score=39.53  Aligned_cols=92  Identities=9%  Similarity=-0.004  Sum_probs=69.2

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccC----CchhhHHHHHHHHHHH
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN----LPRDFFLYCYYGGMIF  187 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~----~~~~~l~Y~yy~G~i~  187 (347)
                      ....++...|+.....|+.. +|+.   ...+..+-..+...+.|+.|++.+++.|---|    .......-++--|.++
T Consensus        14 ~~~~~~y~~Ai~~y~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~   89 (128)
T d1elra_          14 AYKKKDFDTALKHYDKAKEL-DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY   89 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh-Cccc---HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            33455556688888887764 6643   34567788999999999999999988763211    1234456677899999


Q ss_pred             HhhhcHHHHHHHHHHhhcCC
Q 019008          188 IGQKRFRKALELLHNVVTAP  207 (347)
Q Consensus       188 ~~~k~y~~A~~~l~~ai~~P  207 (347)
                      ..+++|++|.++|+.+++.+
T Consensus        90 ~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          90 FKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhCCHHHHHHHHHHHHhcC
Confidence            99999999999999999843

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.15  Score=42.29  Aligned_cols=91  Identities=11%  Similarity=0.032  Sum_probs=71.3

Q ss_pred             HhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh
Q 019008          112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK  191 (347)
Q Consensus       112 ~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k  191 (347)
                      ....+....|+..+..|+. ++|+.   -..+..+-..+...+.|+.|+..+++.+- +++  .....++..|.++..++
T Consensus        47 y~~~g~~~~A~~~~~~al~-l~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~p--~~~~a~~~lg~~~~~~g  119 (259)
T d1xnfa_          47 YDSLGLRALARNDFSQALA-IRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLE-LDP--TYNYAHLNRGIALYYGG  119 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHH-HCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT--TCTHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHhhc-cCCCC---HHHHhhhchHHHHHHHHHHhhhhhhHHHH-HHh--hhhhhHHHHHHHHHHHh
Confidence            3456677778999988875 57754   34577888999999999999999988654 221  22345677899999999


Q ss_pred             cHHHHHHHHHHhhc-CCcc
Q 019008          192 RFRKALELLHNVVT-APMS  209 (347)
Q Consensus       192 ~y~~A~~~l~~ai~-~P~~  209 (347)
                      +|++|...|+.++. .|..
T Consensus       120 ~~~~A~~~~~~al~~~p~~  138 (259)
T d1xnfa_         120 RDKLAQDDLLAFYQDDPND  138 (259)
T ss_dssp             CHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHhhcccc
Confidence            99999999999997 8864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.08  Score=45.65  Aligned_cols=83  Identities=12%  Similarity=0.112  Sum_probs=46.8

Q ss_pred             chHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHH
Q 019008          121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL  200 (347)
Q Consensus       121 ~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l  200 (347)
                      ++..+..++. .+|+.. -..++..+...+...+.++.|...+++.+-.-|   +....++..|.++..+++|++|.++|
T Consensus       155 a~~~~~~al~-~~p~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~  229 (323)
T d1fcha_         155 VKELFLAAVR-LDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP---NDYLLWNKLGATLANGNQSEEAVAAY  229 (323)
T ss_dssp             HHHHHHHHHH-HSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHH-Hhhccc-ccccchhhHHHHHHHHHHhhhhccccccccccc---ccccchhhhhhcccccccchhHHHHH
Confidence            3344444443 344321 133455566666677777777777666543211   23445556667777777777777777


Q ss_pred             HHhhc-CCc
Q 019008          201 HNVVT-APM  208 (347)
Q Consensus       201 ~~ai~-~P~  208 (347)
                      +.++. -|.
T Consensus       230 ~~al~~~p~  238 (323)
T d1fcha_         230 RRALELQPG  238 (323)
T ss_dssp             HHHHHHCTT
T ss_pred             HHHHHHhhc
Confidence            77775 554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.28  Score=39.92  Aligned_cols=96  Identities=10%  Similarity=0.058  Sum_probs=73.8

Q ss_pred             hhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCC-------------chhhHHH
Q 019008          113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-------------PRDFFLY  179 (347)
Q Consensus       113 ~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~-------------~~~~l~Y  179 (347)
                      ...++...|+.....|+. +||+.   ...|..+-.++..-+.|+.|+.-+++.+...+.             ......-
T Consensus        47 ~~~g~~~~A~~~~~kAl~-ldp~~---~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~  122 (192)
T d1hh8a_          47 TILKNMTEAEKAFTRSIN-RDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV  122 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH
T ss_pred             HHcCCchhHHHHHHHHHH-Hhhhh---hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHH
Confidence            456777778999999875 57743   667888889999999999999888887643221             1223566


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchh
Q 019008          180 CYYGGMIFIGQKRFRKALELLHNVVT-APMSSIN  212 (347)
Q Consensus       180 ~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s  212 (347)
                      +|.-|.++..+++|++|.+.|+.++. .|...-+
T Consensus       123 ~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~  156 (192)
T d1hh8a_         123 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS  156 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGG
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchH
Confidence            78899999999999999999999997 5654333

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.78  E-value=0.08  Score=45.66  Aligned_cols=89  Identities=9%  Similarity=-0.118  Sum_probs=50.4

Q ss_pred             hhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcH
Q 019008          114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF  193 (347)
Q Consensus       114 ~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y  193 (347)
                      ..+....++..++.|+.. +|+.   ...+..+...+...+.++.|+..+.+.+...|   .....++..|.++..+++|
T Consensus       249 ~~~~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~  321 (388)
T d1w3ba_         249 EQGLIDLAIDTYRRAIEL-QPHF---PDAYCNLANALKEKGSVAEAEDCYNTALRLCP---THADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHT-CSSC---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCH
T ss_pred             HCCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC---ccchhhhHHHHHHHHCCCH
Confidence            344555566666666543 4322   33445566666666777777766665433222   2234445556666666677


Q ss_pred             HHHHHHHHHhhc-CCcc
Q 019008          194 RKALELLHNVVT-APMS  209 (347)
Q Consensus       194 ~~A~~~l~~ai~-~P~~  209 (347)
                      ++|..+|+.++. .|..
T Consensus       322 ~~A~~~~~~al~~~p~~  338 (388)
T d1w3ba_         322 EEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             HHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            777766666665 5643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.084  Score=43.90  Aligned_cols=86  Identities=15%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             hHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHH
Q 019008          122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLH  201 (347)
Q Consensus       122 i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~  201 (347)
                      +.-+..++.+.+.++..-..+|-.+-..+...+.|+.|...+++.+- +++  +....++.-|.++..+++|++|..+|+
T Consensus        19 l~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~-l~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~   95 (259)
T d1xnfa_          19 LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA-IRP--DMPEVFNYLGIYLTQAGNFDAAYEAFD   95 (259)
T ss_dssp             HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCC--CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc-cCC--CCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence            34444555444433344455666677889999999999999998764 221  235567888999999999999999999


Q ss_pred             Hhhc-CCccc
Q 019008          202 NVVT-APMSS  210 (347)
Q Consensus       202 ~ai~-~P~~~  210 (347)
                      .++. .|...
T Consensus        96 ~al~~~p~~~  105 (259)
T d1xnfa_          96 SVLELDPTYN  105 (259)
T ss_dssp             HHHHHCTTCT
T ss_pred             HHHHHHhhhh
Confidence            9997 88753

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.34  E-value=0.22  Score=39.43  Aligned_cols=65  Identities=15%  Similarity=0.085  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+..+..++...+.|+.|+...++.+- +++  +...-+|..|.++..+++|++|...|+.|+. -|.+
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~-~~p--~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALE-IDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT-TCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhh-hhh--hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            445567788899999999999998764 332  3456688999999999999999999999998 8875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.14  Score=40.06  Aligned_cols=59  Identities=14%  Similarity=0.122  Sum_probs=50.0

Q ss_pred             HHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          148 QLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       148 ~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..|+..+.|+.|+..+.+.+-- +  .+...+++..|.++..+++|++|..+|+.++. -|..
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~-~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIEL-N--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-S--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHcCCHHHHHHHhhhcccc-c--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc
Confidence            4688999999999999987642 2  24577889999999999999999999999997 7764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.21  Score=43.97  Aligned_cols=108  Identities=14%  Similarity=0.079  Sum_probs=59.9

Q ss_pred             hhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhc-CCchhhhhhhcccccccCC
Q 019008           94 IRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA-KCYKAGLSVLEDDIYEINL  172 (347)
Q Consensus        94 lr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~-~~y~~Al~~l~~~i~~i~~  172 (347)
                      |.|-|+ |......+.......+...+|+.....||.- +|+  ..|.. ...-..+..- +.|+.|+.++++.+-.   
T Consensus        36 I~~~p~-~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l-nP~--~~~a~-~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          36 IIYSDK-FRDVYDYFRAVLQRDERSERAFKLTRDAIEL-NAA--NYTVW-HFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             ECCCHH-HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-CTT--CHHHH-HHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             cccCHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-CCC--ChHHH-HHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            444443 4443333333444455566777777777663 653  33433 2222222222 3578888877775432   


Q ss_pred             chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       173 ~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .......+++.|.++..+++|++|.++|..++. -|.+
T Consensus       108 ~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1         108 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc
Confidence            123455566667777777777777777777776 6654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.72  E-value=0.089  Score=42.06  Aligned_cols=59  Identities=10%  Similarity=0.097  Sum_probs=49.4

Q ss_pred             HHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          148 QLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       148 ~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ..+...+.|+.|+..+.+.+---|   ....+++..|.+|..+++|++|..+|+.|+. -|..
T Consensus        12 n~~~~~g~~~~Ai~~~~kal~~~p---~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~   71 (201)
T d2c2la1          12 NRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc
Confidence            567899999999999998764322   2356778889999999999999999999998 6864

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.57  E-value=0.32  Score=37.97  Aligned_cols=94  Identities=11%  Similarity=0.041  Sum_probs=66.1

Q ss_pred             hcccccchHHHHHHHHhhCCCCC--------chhhHHHHHHHHHHhcCCchhhhhhhcccccccC--------CchhhHH
Q 019008          115 LEAPIRGVGPMLTAIRKIQSSTE--------HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN--------LPRDFFL  178 (347)
Q Consensus       115 ~~~~~~~i~~L~~Ai~r~~~~~~--------~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~--------~~~~~l~  178 (347)
                      .+....||.....|+.-....+.        .....|..+-..+..-+.|+.|..-.++.+--.+        .......
T Consensus        22 ~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  101 (156)
T d2hr2a1          22 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS  101 (156)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHH
Confidence            34455577777777765443222        1245677778888999999999988877653111        1234455


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          179 YCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       179 Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      -++-.|.+|..+++|++|.++|+.++. .|.
T Consensus       102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1         102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            577789999999999999999999996 564

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.44  Score=40.62  Aligned_cols=94  Identities=10%  Similarity=0.016  Sum_probs=68.7

Q ss_pred             HHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHH
Q 019008          109 KDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFI  188 (347)
Q Consensus       109 ~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~  188 (347)
                      +......+....++..+..+... ++..   ...+..+...+...+.++.|...+.+.+---|   +....++..|.++.
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~  282 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRALSL-SPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP---HFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS---SCHHHHHHHHHHHH
T ss_pred             hhhhhccccHHHHHHHHHHhHHH-hhhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH
Confidence            33444556666778888777655 3322   44566778899999999999999988653212   23455667899999


Q ss_pred             hhhcHHHHHHHHHHhhc-CCcc
Q 019008          189 GQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       189 ~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .+++|++|...|+.++. .|..
T Consensus       283 ~~~~~~~A~~~~~~~~~~~~~~  304 (388)
T d1w3ba_         283 EKGSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCCHHHHHHHHHhhhccCCcc
Confidence            99999999999999997 7754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=1.3  Score=36.80  Aligned_cols=68  Identities=9%  Similarity=0.008  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHhcCCchhhhhhhcccccccCC--chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL--PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       141 ~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~--~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      -+|.+..+.++..+.++.|++.+.+.+-..|.  +.....-++..|.++..+++|++|...|+.++. .|.
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            35666678888888888888888776443332  222233455668888888888888888888886 444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.15  Score=38.11  Aligned_cols=60  Identities=13%  Similarity=0.017  Sum_probs=50.0

Q ss_pred             HHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          147 LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       147 l~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      -..++..+.|+.|+..+++.|-.-|   +....++..|.++..+++|++|...++.++. -|..
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   70 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW   70 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC---cchhhhhcccccccccccccccchhhhhHHHhccch
Confidence            3568899999999999998764322   3356788889999999999999999999998 8875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.4  Score=40.90  Aligned_cols=92  Identities=12%  Similarity=0.053  Sum_probs=68.3

Q ss_pred             hHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhh
Q 019008          111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ  190 (347)
Q Consensus       111 ~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~  190 (347)
                      .....++...++..++.++.. +|+.   ...+..+-..+...+.++.|...+.+.+-. +  .+....++.-|.+|..+
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--p~~~~a~~~lg~~~~~~  253 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSV-RPND---YLLWNKLGATLANGNQSEEAVAAYRRALEL-Q--PGYIRSRYNLGISCINL  253 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccccccccc-cccc---ccchhhhhhcccccccchhHHHHHHHHHHH-h--hccHHHHHHHHHHHHHC
Confidence            334566666778888877654 5543   456778888999999999999998886532 2  12355677889999999


Q ss_pred             hcHHHHHHHHHHhhc-CCcc
Q 019008          191 KRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       191 k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ++|++|.+.|+.|+. .|.+
T Consensus       254 g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         254 GAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhCCcC
Confidence            999999999999997 6653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.29  Score=39.88  Aligned_cols=127  Identities=9%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHH
Q 019008          142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYK  220 (347)
Q Consensus       142 ~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~K  220 (347)
                      ++..+-..+...++|+.|+..+++.|- ++  ..+..-++..|+++..+++|++|...|+.|+. .|.+...     .|+
T Consensus        38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~-ld--p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~-----~~~  109 (192)
T d1hh8a_          38 ICFNIGCMYTILKNMTEAEKAFTRSIN-RD--KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI-----DYK  109 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEE-----ECG
T ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHH-Hh--hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchH-----HHH
Confidence            344556666677777777776666543 22  12344555667777777777777777766663 3332100     000


Q ss_pred             HHHHHHHHhcCCCCCCCCcccCHHHhhhhhhcchhHHHHHHHH-hcCChHHHHHHHHhccccccccccccHHHHHHHHHH
Q 019008          221 KYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTY-NTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMY  299 (347)
Q Consensus       221 k~iLv~LL~~G~i~~~lp~~~s~~~~r~~k~~~~pY~~la~a~-~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~~~~~~~  299 (347)
                      .        .|... .             ...+..|.+++.++ ..|+.++-.+.++.......++ ..+.+..++..+.
T Consensus       110 ~--------~~~~~-~-------------~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~-~~~~~~~Al~~~~  166 (192)
T d1hh8a_         110 I--------LGLQF-K-------------LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-RHSKIDKAMECVW  166 (192)
T ss_dssp             G--------GTBCC-E-------------EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-GGGHHHHHHHHHH
T ss_pred             H--------hhhhc-c-------------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHH
Confidence            0        01111 0             01234567777765 4577666666665554444443 3344555554443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.69  E-value=0.38  Score=37.24  Aligned_cols=50  Identities=12%  Similarity=0.070  Sum_probs=38.2

Q ss_pred             hhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          158 AGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       158 ~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      .|..++..-. ..+ +.+.-.++||.|+.|..+|+|++|..+++.++. -|.+
T Consensus        56 ~gI~lLe~~~-~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          56 LGVKILTDIY-KEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             HHHHHHHHHH-HHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHH-hcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence            4555554422 111 334568999999999999999999999999997 8876

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.12  E-value=5.2  Score=33.54  Aligned_cols=132  Identities=11%  Similarity=-0.052  Sum_probs=85.9

Q ss_pred             hhhhhHHHHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCC--CCchhhHHHHHHHHH
Q 019008           73 ERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLC  150 (347)
Q Consensus        73 ~~~~~~~~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~--~~~lT~~H~~ll~l~  150 (347)
                      +++-.....+..+....+.  ...+...+..+.+.+.   ...+.+..++..++.|+.-....  +.....++..+...+
T Consensus        94 ~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l~~~~~---~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~  168 (290)
T d1qqea_          94 VNAVDSLENAIQIFTHRGQ--FRRGANFKFELGEILE---NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK  168 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHhhhccc--chhHHHHHHHHHHhHh---hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Confidence            3455566666666655431  1122333444433221   23566777899998887654332  333455677788999


Q ss_pred             HhcCCchhhhhhhcccccccCC----chhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          151 LLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       151 l~~~~y~~Al~~l~~~i~~i~~----~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ...++|+.|+..+++-+...+.    ....-.+++-.|+++...+++..|...|+.++. .|..
T Consensus       169 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~  232 (290)
T d1qqea_         169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (290)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            9999999999999885443221    234456778889999999999999999999997 5653

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.00  E-value=0.33  Score=32.41  Aligned_cols=42  Identities=10%  Similarity=0.069  Sum_probs=34.7

Q ss_pred             HHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhcccccc
Q 019008          303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLL  345 (347)
Q Consensus       303 I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~  345 (347)
                      |.++-+.=.++|.++||+++|++ ...+..-+.+|.++|.+.=
T Consensus         8 Il~~L~~n~r~s~~~lA~~~gls-~~~v~~Ri~~L~~~giI~~   49 (60)
T d1i1ga1           8 ILEILEKDARTPFTEIAKKLGIS-ETAVRKRVKALEEKGIIEG   49 (60)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEe
Confidence            33444445899999999999997 8999999999999998753

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=88.68  E-value=0.52  Score=32.27  Aligned_cols=47  Identities=9%  Similarity=0.095  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008          297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       297 ~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~  344 (347)
                      ..-+..|.++-...-.+|-+|||+.++++ ..-+..+|.+|+++|.+.
T Consensus         5 ~~N~~~Il~~l~~~g~~sr~eLa~~~glS-~~Tv~~~l~~L~~~Glv~   51 (71)
T d1z05a1           5 QINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITRELIDAHLIH   51 (71)
T ss_dssp             HHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEE
Confidence            34455677777788899999999999998 788999999999999763

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.56  E-value=0.38  Score=32.04  Aligned_cols=43  Identities=14%  Similarity=0.135  Sum_probs=34.8

Q ss_pred             HHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccccc
Q 019008          303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLY  346 (347)
Q Consensus       303 I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~~  346 (347)
                      |.++-+.=.++|..+||++++++ ...+..-+.+|.++|...-|
T Consensus         8 Il~~L~~n~r~s~~eiA~~l~ls-~~~v~~Ri~~L~~~giI~~~   50 (60)
T d2cyya1           8 IIKILQNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIKKF   50 (60)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEeE
Confidence            33333344899999999999997 89999999999999987643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.01  E-value=0.22  Score=37.69  Aligned_cols=58  Identities=12%  Similarity=0.182  Sum_probs=46.1

Q ss_pred             HHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCc
Q 019008          148 QLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       148 ~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      ..+...+.|+.|+..+++.+-- + + +....++..|.+|..+++|++|...++.++. .|.
T Consensus        12 ~~~~~~~~y~~Ai~~y~~al~~-~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~   70 (128)
T d1elra_          12 NDAYKKKDFDTALKHYDKAKEL-D-P-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE   70 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh-C-c-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc
Confidence            3578889999999999887642 2 1 2355778889999999999999999999996 454

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=86.37  E-value=0.42  Score=32.18  Aligned_cols=36  Identities=8%  Similarity=0.045  Sum_probs=32.0

Q ss_pred             hhcccHHHHHHHcCCCChhhHHHHHHHHhhccccccc
Q 019008          310 YLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNLLY  346 (347)
Q Consensus       310 Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~~~  346 (347)
                      =.++|..+||+++|++ ...+..-+.+|.++|.+.-|
T Consensus        17 ~~r~s~~eiA~~l~ls-~~~v~~Ri~rL~~~GiI~~~   52 (63)
T d2cg4a1          17 NARTAYAELAKQFGVS-PETIHVRVEKMKQAGIITGA   52 (63)
T ss_dssp             CTTSCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEEE
T ss_pred             cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEeE
Confidence            3899999999999997 89999999999999987533

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.06  E-value=0.7  Score=31.62  Aligned_cols=47  Identities=17%  Similarity=0.127  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008          297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       297 ~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~  344 (347)
                      ..-+..|.++-...-.+|-+|||+.+||+ ..-+-.+|.+|+++|.+.
T Consensus         4 ~~N~~~Il~~i~~~g~~sr~eLa~~~gLS-~~Tvs~iv~~L~~~glv~   50 (70)
T d1z6ra1           4 QTNAGAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVHEMLEAHLVQ   50 (70)
T ss_dssp             HHHHHHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEE
T ss_pred             HHHHHHHHHHHHHcCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence            44566788888889999999999999998 677889999999999763

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=85.96  E-value=0.47  Score=31.95  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=34.3

Q ss_pred             HHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008          303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       303 I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~  344 (347)
                      |...-+.=.++|.++||+++|++ +..+..-+.+|.++|.+.
T Consensus        10 IL~~L~~n~r~s~~~iA~~lgis-~~tv~~Ri~~L~~~giI~   50 (63)
T d2cfxa1          10 IIEELKKDSRLSMRELGRKIKLS-PPSVTERVRQLESFGIIK   50 (63)
T ss_dssp             HHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCee
Confidence            33444445799999999999998 799999999999999875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.54  E-value=9.3  Score=32.12  Aligned_cols=187  Identities=12%  Similarity=0.050  Sum_probs=105.5

Q ss_pred             HHHHHHHhcCChhhhhchhHHHHHHHHHHHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhh
Q 019008           80 PIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAG  159 (347)
Q Consensus        80 ~~~~~fl~~~~~~Qlr~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~A  159 (347)
                      ....+.+..++|...    ..|..++..    ....+....+...+..++. .+|..  ...+...+++.+...+.++.|
T Consensus        85 ~i~~ral~~~~p~~~----~l~~~ya~~----~~~~~~~~~a~~i~~~~l~-~~~~~--~~~~w~~~~~~~~~~~~~~~a  153 (308)
T d2onda1          85 NIYERAISTLLKKNM----LLYFAYADY----EESRMKYEKVHSIYNRLLA-IEDID--PTLVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             HHHHHHHTTTTTTCH----HHHHHHHHH----HHHTTCHHHHHHHHHHHHT-SSSSC--THHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHcCCCCH----HHHHHHHHH----HHhcccHHHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHHcCChHHH
Confidence            334444555666533    234443332    2234444445555665554 34433  344678888999999999999


Q ss_pred             hhhhcccccccCCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCccchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 019008          160 LSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLP  238 (347)
Q Consensus       160 l~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~~~s~i~vea~Kk~iLv~LL~~G~i~~~lp  238 (347)
                      ..++.+.+-..|  ...-.|..++-.-+-..++.+.|...|+.++. .|.+.  .    .+..++-. ++..|++.    
T Consensus       154 r~i~~~al~~~~--~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~--~----~w~~y~~~-~~~~g~~~----  220 (308)
T d2onda1         154 RMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP--E----YVLAYIDY-LSHLNEDN----  220 (308)
T ss_dssp             HHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH--H----HHHHHHHH-HHTTCCHH----
T ss_pred             HHHHHHHHHhCC--CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH--H----HHHHHHHH-HHHcCChH----
Confidence            999988654323  22334445555556677899999999999997 77641  1    12222211 12334433    


Q ss_pred             cccCHHHhhhhhhc----------chhHHHHHHHHhcCChHHHHHHHHhccccccccccccHHHH
Q 019008          239 KYTSSAAQRNLKNF----------SQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQ  293 (347)
Q Consensus       239 ~~~s~~~~r~~k~~----------~~pY~~la~a~~~g~~~~~~~~~~~~~~~f~~D~n~gLV~~  293 (347)
                      + .-....+.++..          -.-|.++-  -..||++....+.++..+.|.++.+...+.+
T Consensus       221 ~-aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE--~~~G~~~~~~~~~~r~~~~~~~~~~~~~~~~  282 (308)
T d2onda1         221 N-TRVLFERVLTSGSLPPEKSGEIWARFLAFE--SNIGDLASILKVEKRRFTAFREEYEGKETAL  282 (308)
T ss_dssp             H-HHHHHHHHHHSSSSCGGGCHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHTTTTTSSCHHHH
T ss_pred             H-HHHHHHHHHHhCCCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHCccccccchHHH
Confidence            1 111222222211          11223322  1449999999988888888988877654444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=83.94  E-value=0.55  Score=36.99  Aligned_cols=33  Identities=12%  Similarity=0.196  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHhhc-CCcc
Q 019008          177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS  209 (347)
Q Consensus       177 l~Y~yy~G~i~~~~k~y~~A~~~l~~ai~-~P~~  209 (347)
                      ...+.-.|.+|..+++|++|.++++.|+. .|.+
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~   97 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN   97 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence            44555689999999999999999999998 7875

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=83.17  E-value=1.2  Score=29.89  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             hcccHHHHHHHcCCCChhhHHHHHHHHhhccccc
Q 019008          311 LTLSLQDIANTVQLNSSKEAEMHVLQMVTFEVNL  344 (347)
Q Consensus       311 s~IsL~dIa~~l~l~s~~eaE~~v~~mI~~G~~~  344 (347)
                      .--.+.||+..++++ +++++.++..+++.|.++
T Consensus        22 ~PP~vrdl~~~l~~~-e~~~~~lL~~l~~~G~lv   54 (64)
T d1lvaa3          22 QPPSFKEVAGSFNLD-PSELEELLHYLVREGVLV   54 (64)
T ss_dssp             SCCBHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE
T ss_pred             CCCcHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE
Confidence            667899999999988 899999999999999885

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.46  E-value=1.1  Score=32.24  Aligned_cols=41  Identities=15%  Similarity=0.043  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhhhhcccHHHHHHHcCCCChhhHHHHHHH
Q 019008          296 SSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQ  336 (347)
Q Consensus       296 ~~~~r~~I~~L~~~Ys~IsL~dIa~~l~l~s~~eaE~~v~~  336 (347)
                      +++++....-++.||.+|+.+-+++.+|+.++++.+..+.+
T Consensus         5 dsIR~~i~~vv~iTyq~I~~~~L~e~LG~~~d~~L~~~i~~   45 (85)
T d1rz4a1           5 DSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSK   45 (85)
T ss_dssp             HHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhheeeeeeEEcHHHHHHHhCCCCHHHHHHHHHH
Confidence            57888889999999999999999999999989999888765

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.96  E-value=1.5  Score=33.75  Aligned_cols=55  Identities=15%  Similarity=0.246  Sum_probs=37.9

Q ss_pred             CCchhhhhhhcccccccCCchhhHHHHHHHHHHHHhhh-----------cHHHHHHHHHHhhc-CCccch
Q 019008          154 KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK-----------RFRKALELLHNVVT-APMSSI  211 (347)
Q Consensus       154 ~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~~~~k-----------~y~~A~~~l~~ai~-~P~~~~  211 (347)
                      +.++.|...+++.+ .++ | +...-+|..|.+|..++           .|++|.++|+.|+. -|.+..
T Consensus        55 ~~~~~Ai~~~~kAl-~l~-P-~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~  121 (145)
T d1zu2a1          55 QMIQEAITKFEEAL-LID-P-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  121 (145)
T ss_dssp             HHHHHHHHHHHHHH-HHC-T-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHH-Hhc-c-hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence            44566777777655 233 2 23445667888887654           58999999999997 898643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=80.58  E-value=2.7  Score=35.91  Aligned_cols=95  Identities=7%  Similarity=-0.053  Sum_probs=49.5

Q ss_pred             HHHhHhhhcccccchHHHHHHHHhhCCCCCchhhHHHHHHHHHHhcCCchhhhhhhcccccccCCchhhHHHHHHHHHHH
Q 019008          108 YKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIF  187 (347)
Q Consensus       108 ~~~~~~~~~~~~~~i~~L~~Ai~r~~~~~~~lT~~H~~ll~l~l~~~~y~~Al~~l~~~i~~i~~~~~~l~Y~yy~G~i~  187 (347)
                      +.+.+...++..+|+.-++.++.. +|+.   +..+..+-.+....+..+.+..-...+...-+ + +.....+..+.++
T Consensus        36 La~lL~~~G~~e~A~~~l~~a~~l-~P~~---~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~-p-~~~~~~l~~a~~~  109 (264)
T d1zbpa1          36 FIELLCIDGDFERADEQLMQSIKL-FPEY---LPGASQLRHLVKAAQARKDFAQGAATAKVLGE-N-EELTKSLVSFNLS  109 (264)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-CGGG---HHHHHHHHHHHHHHHHHHHHTTSCCCEECCCS-C-HHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHhccccHHHHHHhhhhhcccC-c-hHHHHHHHHHHHH
Confidence            444444445555555555554432 3321   23333333333333333333333333322111 2 3345556678888


Q ss_pred             HhhhcHHHHHHHHHHhhc-CCc
Q 019008          188 IGQKRFRKALELLHNVVT-APM  208 (347)
Q Consensus       188 ~~~k~y~~A~~~l~~ai~-~P~  208 (347)
                      ...+++++|.+.++.+.. .|.
T Consensus       110 ~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1         110 MVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HhCCCHHHHHHHHHHHHhcCCC
Confidence            899999999999999886 554