Citrus Sinensis ID: 019017

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKLKNVESEEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCPIESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEIDPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANPERK
ccccEEEEEcccccEEEEcHHHHHHcHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccEEccccccccccccccccc
ccccEEEEEEccccEEEEcHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHccccccccccEccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccEEEEEccccccccccccccc
MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKgmgssknyaislpqrvNPAMLSLILDYCrfhqvpgssnkerksFDEKFIRMDTKRLCELtsaadslqlkplvDLTSRALARIIEGKTPEEIREIfhlpddlteeekleplknttddprIRLLNRLYAKKRKELKEREklknveseeervdersvDDLLQFinggerdskgtkssknkkknqrkkdqlkdtcpiesiktdkqesnglnfvcHSAEvgnkfstdlgetsnmqnmedgifvrkvdfddvdiddeiDPALKEKLDREVEDFARRLNSDWPERMQEILSlghdmkplrhstkgngtirryanperk
MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFhqvpgssnkerksfdEKFIRMDTKRLCELTsaadslqlkplvdLTSRALARiiegktpeeireifhlpddlteeekleplknttddprirlLNRLYAkkrkelkereklknveseeervdersvddllqfinggerdskgtkssknkkknqrkkdqlkdtcpiesiktdkqesngLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEIDpalkekldrEVEDFArrlnsdwpERMQEIlslghdmkplrhstkgngtirryanperk
MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAkkrkelkereklkNveseeervdersvddLLQFINGGERDSKGTkssknkkknqrkkdqlkdTCPIESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKvdfddvdiddeidPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANPERK
****YIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQV*************KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHL************************************************************************************************************LNFVCHSAEVG*****************DGIFVRKVDFDDVDIDDEI***********************************************************
**KSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEP*****DDPRIRL******************************RSVDDLLQ*****************************************************************************FVRKVDFDDVDIDDEIDPALKEKLDREVEDFARRLNSDWPERMQEI*****************************
MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERE***************SVDDLLQFINGGE**********************KDTCPIESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEIDPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANPERK
***SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKLKNVESEEERVDERSVDDLLQFINGG**********************************************************************GIFVRKVDFDDVDIDDEIDPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGN*T**********
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MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLxxxxxxxxxxxxxxxxxxxxxESEEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCPIESIKTDKQESNGLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEIDPALKEKLDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANPERK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query347 2.2.26 [Sep-21-2011]
Q8LF97351 SKP1-like protein 21 OS=A yes no 0.962 0.951 0.718 1e-131
A8MQG7352 SKP1-like protein 20 OS=A no no 0.936 0.923 0.703 1e-116
Q557E4162 SCF ubiquitin ligase comp yes no 0.377 0.808 0.366 2e-16
P52285162 SCF ubiquitin ligase comp yes no 0.377 0.808 0.366 3e-16
Q9LSX9153 SKP1-like protein 9 OS=Ar no no 0.397 0.901 0.344 3e-16
Q8NK13171 E3 ubiquitin ligase compl N/A no 0.386 0.783 0.349 9e-15
Q71U00163 S-phase kinase-associated N/A no 0.383 0.815 0.351 1e-14
Q5R512163 S-phase kinase-associated yes no 0.383 0.815 0.351 1e-14
Q4R5B9163 S-phase kinase-associated N/A no 0.383 0.815 0.351 1e-14
P63208163 S-phase kinase-associated yes no 0.383 0.815 0.351 1e-14
>sp|Q8LF97|ASK21_ARATH SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1 Back     alignment and function desciption
 Score =  469 bits (1206), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/344 (71%), Positives = 276/344 (80%), Gaps = 10/344 (2%)

Query: 1   MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLI 60
           MMKSYIWL+TADGSIQQVEQEVAMFCP+ICQEVIQKG+GSSKNYAISLPQRVNPAMLSLI
Sbjct: 13  MMKSYIWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLI 72

Query: 61  LDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 120
            DYCRFHQVPG SNKERK +DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE
Sbjct: 73  FDYCRFHQVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132

Query: 121 GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKLKNVES 180
           GKTPEEIREIFHLPDDLTEEEKLEPLKNT DDPRIRLLNRLYAKKRKELKEREKLK+VE 
Sbjct: 133 GKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIRLLNRLYAKKRKELKEREKLKSVEV 192

Query: 181 EEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCPIESIKTDKQESN 240
            EE VDERSVDDLL FING +     T  SK K K ++++         E+++ D    +
Sbjct: 193 -EEHVDERSVDDLLSFINGRDPKVVKTSKSKKKNKKRKEQKNGSSNGTCEALEKDL---H 248

Query: 241 GLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEIDPALKEKLDREV 300
            L+    SAE+ +  ++ LG+ SN+ +MED IF  K +F+D  IDDEIDPALKE LDREV
Sbjct: 249 NLDSKSQSAEIVDNTASCLGDVSNLPSMEDDIFTPKTEFEDGYIDDEIDPALKELLDREV 308

Query: 301 EDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANP 344
           EDFARRLNS W      +LS+G + +P+  S  GNGT RR   P
Sbjct: 309 EDFARRLNSSW------VLSIGQERQPVNFSINGNGTSRRLTGP 346
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.
Arabidopsis thaliana (taxid: 3702)
>sp|A8MQG7|ASK20_ARATH SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1 Back     alignment and function description
>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1 Back     alignment and function description
>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1 Back     alignment and function description
>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1 Back     alignment and function description
>sp|Q8NK13|SKP1_NEUCR E3 ubiquitin ligase complex SCF subunit scon-3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=scon-3 PE=1 SV=1 Back     alignment and function description
>sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1 Back     alignment and function description
>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
255541614359 ubiquitin-protein ligase, putative [Rici 0.942 0.910 0.831 1e-141
225454254388 PREDICTED: SKP1-like protein 21-like [Vi 0.968 0.865 0.747 1e-137
297745305351 unnamed protein product [Vitis vinifera] 0.968 0.957 0.750 1e-137
224067902345 predicted protein [Populus trichocarpa] 0.936 0.942 0.737 1e-136
297820994346 hypothetical protein ARALYDRAFT_486615 [ 0.962 0.965 0.735 1e-131
18411999351 SKP1-like protein 21 [Arabidopsis thalia 0.962 0.951 0.718 1e-129
302143834358 unnamed protein product [Vitis vinifera] 0.985 0.955 0.751 1e-129
225464509359 PREDICTED: SKP1-like protein 21-like [Vi 0.982 0.949 0.750 1e-128
186511286349 SKP1-like protein 21 [Arabidopsis thalia 0.951 0.945 0.723 1e-128
356531993347 PREDICTED: SKP1-like protein 21-like [Gl 0.962 0.962 0.746 1e-128
>gi|255541614|ref|XP_002511871.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223549051|gb|EEF50540.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/327 (83%), Positives = 295/327 (90%)

Query: 1   MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLI 60
           MMKSYIWLQTADGSIQQVEQEVAMFCP+IC E+IQKG+GSSKNYAISLPQRVNPAMLSLI
Sbjct: 5   MMKSYIWLQTADGSIQQVEQEVAMFCPMICHEIIQKGLGSSKNYAISLPQRVNPAMLSLI 64

Query: 61  LDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 120
           LDYCRFHQVPG SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE
Sbjct: 65  LDYCRFHQVPGRSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 124

Query: 121 GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKLKNVES 180
           GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKER+KLKNVE+
Sbjct: 125 GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERQKLKNVEA 184

Query: 181 EEERVDERSVDDLLQFINGGERDSKGTKSSKNKKKNQRKKDQLKDTCPIESIKTDKQESN 240
           +EE VD+RSVDDLL FINGG + SKG K+ KNKKK QR+KDQ K T   E+I+T K+E+N
Sbjct: 185 QEECVDDRSVDDLLSFINGGNKVSKGLKTPKNKKKQQRRKDQQKSTSLNEAIETHKKETN 244

Query: 241 GLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKVDFDDVDIDDEIDPALKEKLDREV 300
           GLN  CH+AEV N+  +   ETS  Q +ED IF  KV+FDDVDIDDEIDPALKEK+DREV
Sbjct: 245 GLNSSCHTAEVDNELQSITSETSKSQGVEDEIFAPKVEFDDVDIDDEIDPALKEKIDREV 304

Query: 301 EDFARRLNSDWPERMQEILSLGHDMKP 327
           EDFARRLNSDWPERMQE+LSL  + +P
Sbjct: 305 EDFARRLNSDWPERMQELLSLSQEKRP 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225454254|ref|XP_002275024.1| PREDICTED: SKP1-like protein 21-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745305|emb|CBI40385.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224067902|ref|XP_002302590.1| predicted protein [Populus trichocarpa] gi|222844316|gb|EEE81863.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297820994|ref|XP_002878380.1| hypothetical protein ARALYDRAFT_486615 [Arabidopsis lyrata subsp. lyrata] gi|297324218|gb|EFH54639.1| hypothetical protein ARALYDRAFT_486615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18411999|ref|NP_567113.1| SKP1-like protein 21 [Arabidopsis thaliana] gi|75155821|sp|Q8LF97.1|ASK21_ARATH RecName: Full=SKP1-like protein 21; Short=AtSK21 gi|21537190|gb|AAM61531.1| putative SKP1-like protein [Arabidopsis thaliana] gi|332646677|gb|AEE80198.1| SKP1-like protein 21 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302143834|emb|CBI22695.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225464509|ref|XP_002269721.1| PREDICTED: SKP1-like protein 21-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|186511286|ref|NP_001118876.1| SKP1-like protein 21 [Arabidopsis thaliana] gi|332646678|gb|AEE80199.1| SKP1-like protein 21 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356531993|ref|XP_003534559.1| PREDICTED: SKP1-like protein 21-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
TAIR|locus:505006407351 SK21 "AT3G61415" [Arabidopsis 0.962 0.951 0.610 1.7e-98
TAIR|locus:2050709352 SK20 "AT2G45950" [Arabidopsis 0.933 0.920 0.582 1.2e-90
DICTYBASE|DDB_G0269230162 fpaA "ubiquitin ligase subunit 0.389 0.833 0.369 2.2e-18
DICTYBASE|DDB_G0273615162 fpaB-2 "ubiquitin ligase subun 0.389 0.833 0.369 2.8e-18
DICTYBASE|DDB_G0273251162 fpaB-1 "ubiquitin ligase subun 0.389 0.833 0.369 2.8e-18
TAIR|locus:2093084153 SK9 "AT3G21850" [Arabidopsis t 0.397 0.901 0.344 4.6e-18
UNIPROTKB|Q5ZKF5163 SKP1 "S-phase kinase-associate 0.406 0.865 0.352 5.3e-17
UNIPROTKB|Q3ZCF3163 SKP1 "S-phase kinase-associate 0.406 0.865 0.352 5.3e-17
UNIPROTKB|P63208163 SKP1 "S-phase kinase-associate 0.406 0.865 0.352 5.3e-17
UNIPROTKB|P63209163 SKP1 "S-phase kinase-associate 0.406 0.865 0.352 5.3e-17
TAIR|locus:505006407 SK21 "AT3G61415" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 210/344 (61%), Positives = 233/344 (67%)

Query:     1 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLI 60
             MMKSYIWL+TADGSIQQVEQEVAMFCP+ICQEVIQKG+GSSKNYAISLPQRVNPAMLSLI
Sbjct:    13 MMKSYIWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLI 72

Query:    61 LDYCRFHQVPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 120
              DYCRFHQVPG SNKERK +DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE
Sbjct:    73 FDYCRFHQVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132

Query:   121 GKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAXXXXXXXXXXXXXNXXX 180
             GKTPEEIREIFHLPDDLTEEEKLEPLKNT DDPRIRLLNRLYA             +   
Sbjct:   133 GKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIRLLNRLYAKKRKELKEREKLKSVEV 192

Query:   181 XXXXXXXXXXXXLLQFINGGERDSKGTXXXXXXXXXXXXXXXXXXTCPIESIKTDKQESN 240
                         LL FING +     T                      E+++ D    +
Sbjct:   193 EEHVDERSVDD-LLSFINGRDPKVVKTSKSKKKNKKRKEQKNGSSNGTCEALEKDL---H 248

Query:   241 GLNFVCHSAEVGNKFSTDLGETSNMQNMEDGIFVRKXXXXXXXXXXXXXPALKEKLDREV 300
              L+    SAE+ +  ++ LG+ SN+ +MED IF  K             PALKE LDREV
Sbjct:   249 NLDSKSQSAEIVDNTASCLGDVSNLPSMEDDIFTPKTEFEDGYIDDEIDPALKELLDREV 308

Query:   301 EDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYANP 344
             EDFARRLNS W      +LS+G + +P+  S  GNGT RR   P
Sbjct:   309 EDFARRLNSSW------VLSIGQERQPVNFSINGNGTSRRLTGP 346
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS
TAIR|locus:2050709 SK20 "AT2G45950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269230 fpaA "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273615 fpaB-2 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273251 fpaB-1 "ubiquitin ligase subunit SKP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2093084 SK9 "AT3G21850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKF5 SKP1 "S-phase kinase-associated protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCF3 SKP1 "S-phase kinase-associated protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P63208 SKP1 "S-phase kinase-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P63209 SKP1 "S-phase kinase-associated protein 1" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8MQG7ASK20_ARATHNo assigned EC number0.70380.93650.9232nono
Q8LF97ASK21_ARATHNo assigned EC number0.71800.96250.9515yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
smart00512104 smart00512, Skp1, Found in Skp1 protein family 1e-23
pfam0146678 pfam01466, Skp1, Skp1 family, dimerisation domain 6e-17
COG5201158 COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen 3e-13
>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family Back     alignment and domain information 
 Score = 93.1 bits (232), Expect = 1e-23
 Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 3   KSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILD 62
             YI L ++DG + +VE+EVA     I   +   G+    N  I LP  V   +LS +++
Sbjct: 1   SKYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPN-VTSKILSKVIE 59

Query: 63  YCRFHQVPGSSNKE---RKSFDEKFIRMDTKRLCELTSAADSLQL 104
           YC  H     S  +     ++D +F+++D + L EL  AA+ L +
Sbjct: 60  YCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104
>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain Back     alignment and domain information
>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 347
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 100.0
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 100.0
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 99.92
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 99.87
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 99.66
KOG3473112 consensus RNA polymerase II transcription elongati 99.46
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 98.02
PHA02713 557 hypothetical protein; Provisional 97.72
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 97.58
PHA03098 534 kelch-like protein; Provisional 97.24
PHA02790 480 Kelch-like protein; Provisional 96.94
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 96.67
KOG2716230 consensus Polymerase delta-interacting protein PDI 91.14
KOG3433203 consensus Protein involved in meiotic recombinatio 83.8
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-42  Score=307.53  Aligned_cols=146  Identities=36%  Similarity=0.588  Sum_probs=134.1

Q ss_pred             CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC--------
Q 019017            1 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS--------   72 (347)
Q Consensus         1 m~~s~IkL~SsDG~iF~Vd~eaA~qS~tIr~mL~d~g~g~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~--------   72 (347)
                      |++++|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++        
T Consensus         2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~   79 (162)
T KOG1724|consen    2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL   79 (162)
T ss_pred             CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence            678999999999999999999999999999999999886422 599999 7999999999999999998643        


Q ss_pred             -CchhhhhhHHhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 019017           73 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN  148 (347)
Q Consensus        73 -s~~ei~~WD~eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~TpEEE~Ei~~~  148 (347)
                       ....++.||++|+++|..+||+|+.||+||+|++|+++||++||+||+||||+|||.+|||++|+||||+.+++++
T Consensus        80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e  156 (162)
T KOG1724|consen   80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKE  156 (162)
T ss_pred             cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhc
Confidence             2234899999999999999999999999999999999999999999999999999999999999999988777765

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
3l2o_A149 Structure-Based Mechanism Of Dimerization-Dependent 2e-16
1fqv_B149 Insights Into Scf Ubiquitin Ligases From The Struct 2e-16
2ast_A159 Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len 4e-16
2e31_B166 Structural Basis For Selection Of Glycosylated Subs 4e-16
1p22_B145 Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex 5e-15
1fs1_B141 Insights Into Scf Ubiquitin Ligases From The Struct 1e-14
2p1m_A160 Tir1-ask1 Complex Structure Length = 160 1e-13
1ldk_D133 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 1e-12
3mks_A169 Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH 3e-09
1nex_A169 Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp 7e-09
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149 Back     alignment and structure 
Iteration: 1

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 8   LQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFH 67
           LQ++DG I +V+ E+A     I   +   GM       + LP  VN A+L  ++ +C  H
Sbjct: 6   LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-----VPLP-NVNAAILKKVIQWCTHH 59
Query: 68  Q--VPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPE 125
           +    GS   +   +D++F+++D   L EL  AA+ L +K L+D+T + +A +I+GKTPE
Sbjct: 60  KDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPE 119
Query: 126 EIREIFHLPDDLTEEEK 142
           EIR+ F++ +D TEEE+
Sbjct: 120 EIRKTFNIKNDFTEEEE 136
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149 Back     alignment and structure
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166 Back     alignment and structure
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145 Back     alignment and structure
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141 Back     alignment and structure
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160 Back     alignment and structure
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133 Back     alignment and structure
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169 Back     alignment and structure
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 3e-28
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 3e-27
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 9e-26
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 3e-24
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 7e-04
2fnj_C96 Transcription elongation factor B polypeptide 1; b 8e-04
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141 Back     alignment and structure
 Score =  106 bits (265), Expect = 3e-28
 Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 16/146 (10%)

Query: 4   SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDY 63
             I LQ++DG I +V+ E+A     I   +   GM       + LP  VN A+L  ++ +
Sbjct: 2   PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLPN-VNAAILKKVIQW 55

Query: 64  CRFHQ----------VPGSSNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSR 113
           C  H+                 +   +D++F+++D   L EL  AA+ L +K L+D+T +
Sbjct: 56  CTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCK 115

Query: 114 ALARIIEGKTPEEIREIFHLPDDLTE 139
            +A +I+GKTPEEIR+ F++ +D TE
Sbjct: 116 TVANMIKGKTPEEIRKTFNIKNDFTE 141
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169 Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160 Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 100.0
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 100.0
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 100.0
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 100.0
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 99.91
2fnj_C96 Transcription elongation factor B polypeptide 1; b 99.9
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 99.89
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.85
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 98.33
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 98.28
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 98.15
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.13
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 98.11
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.05
2vpk_A116 Myoneurin; transcription regulation, transcription 97.97
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 97.95
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 97.95
3b84_A119 Zinc finger and BTB domain-containing protein 48; 97.93
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 97.92
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 97.88
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 97.8
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 97.71
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 97.65
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 97.63
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 97.62
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 97.57
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 97.38
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 97.29
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 80.18
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
Probab=100.00  E-value=3.8e-45  Score=325.05  Aligned_cols=147  Identities=26%  Similarity=0.475  Sum_probs=129.8

Q ss_pred             CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCC---CCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC-----
Q 019017            1 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMG---SSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS-----   72 (347)
Q Consensus         1 m~~s~IkL~SsDG~iF~Vd~eaA~qS~tIr~mL~d~g~g---~~~~~~IpLP~~Vss~iLkkIIEYCe~Hk~~~~-----   72 (347)
                      |.+++|+|+|+||++|.|+..+|++|++|++||.+.+..   .+...+|||| +|++.+|++||+||+||+.+++     
T Consensus         4 m~~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~Iplp-nV~s~iL~kVieyc~~h~~~~~~~~~~   82 (169)
T 3v7d_A            4 MVTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVP-NVRSSVLQKVIEWAEHHRDSNFPDEDD   82 (169)
T ss_dssp             --CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECT-TCCHHHHHHHHHHHHHTTTCCCCC---
T ss_pred             CCCCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeC-CCCHHHHHHHHHHHHHcccCCCccccc
Confidence            667899999999999999999999999999999876541   1123789999 8999999999999999998642     


Q ss_pred             ----CchhhhhhHHhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 019017           73 ----SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN  148 (347)
Q Consensus        73 ----s~~ei~~WD~eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~TpEEE~Ei~~~  148 (347)
                          ....+++||++||++++.+||+||.||+||+|++|+++||++||++|+||||+|||++|||++|||||||++++++
T Consensus        83 ~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~e  162 (169)
T 3v7d_A           83 DDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRE  162 (169)
T ss_dssp             -----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTT
T ss_pred             ccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence                2346899999999999999999999999999999999999999999999999999999999999999999999986
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 347
d1nexa170 a.157.1.1 (A:116-185) Centromere DNA-binding prote 1e-20
d1fs1b155 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, 2e-18
d2c9wc196 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens 6e-14
d1hv2a_99 d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy 8e-14
d1nexa272 d.42.1.1 (A:4-103) Centromere DNA-binding protein 8e-11
d1fs1b261 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk 4e-08
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70 Back     information, alignment and structure

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.4 bits (204), Expect = 1e-20
 Identities = 26/67 (38%), Positives = 45/67 (67%)

Query: 78  KSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDL 137
            S+D +F+++D + L E+  AA+ L +KPL+D   + +A +I G++PEEIR  F++ +D 
Sbjct: 2   DSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDF 61

Query: 138 TEEEKLE 144
           T EE+  
Sbjct: 62  TPEEEAA 68
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99 Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72 Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 99.93
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 99.89
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.83
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 99.71
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 99.71
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 98.12
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.08
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=9.1e-27  Score=178.97  Aligned_cols=70  Identities=37%  Similarity=0.661  Sum_probs=67.7

Q ss_pred             hhhhHHhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccc
Q 019017           77 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPL  146 (347)
Q Consensus        77 i~~WD~eFL~iD~~~LfeLI~AAnYLdI~~LldL~c~~VA~~IkGKTpEEIRk~FgI~~D~TpEEE~Ei~  146 (347)
                      +++||.+|++++..+||+|+.||+||+|++|+++||++||.+|+||||+|||++|||++||||||+++++
T Consensus         1 i~~wD~~F~~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           1 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999874
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure