Citrus Sinensis ID: 019021

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCyftlplftveftahvdpfkwnyrCIAADALSKLIIAIVLALWAKcsskgsycwsitSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRagttdagavhvdkdlegtinaeassrpdfWHLMKLVWLKVAMNPNAYACIFGIAWAFVSnrwhfempsimEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH
Flexible Loop (DISEMBL)
MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGttdagavhvdkdlegtinaeassrpdfWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH
Low Complexity Region (SEG)
MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWsitsfslctltsslVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFiagpaamaigaiamgLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH
Disordered region (IsUnstruct)
*IGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEF**
Disordered Region (DISOPRED)
**GWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTT*************************WHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH
Disordered Region (DISEMBL)
MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH
Disordered Region (DISPRO)
MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAG************************PDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q9FFD0	351	Putative auxin efflux car	yes	no	0.991	0.980	0.759	1e-153
Q5JLM1	363	Probable auxin efflux car	yes	no	0.979	0.936	0.631	1e-123
Q6ZIB5	370	Probable auxin efflux car	no	no	0.994	0.932	0.533	1e-104
Q9LFP6	367	Putative auxin efflux car	no	no	0.994	0.940	0.378	2e-66
Q5VQY3	426	Probable auxin efflux car	no	no	0.988	0.805	0.311	5e-59
Q8RWZ6	616	Auxin efflux carrier comp	no	no	0.440	0.248	0.555	1e-47
Q9LU77	647	Auxin efflux carrier comp	no	no	0.440	0.236	0.555	3e-47
Q5VP70	618	Probable auxin efflux car	no	no	0.394	0.221	0.542	2e-44
Q67UL3	592	Probable auxin efflux car	no	no	0.440	0.258	0.535	2e-44
P0C0X5	554	Probable auxin efflux car	no	no	0.536	0.335	0.452	2e-44

>sp|Q9FFD0|PIN8_ARATH Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=3 SV=2

 Score =  541 bits (1393), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 269/354 (75%), Positives = 296/354 (83%), Gaps = 10/354 (2%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MI   DVYKV+ AMVPLYVAL+LGYGSVKWW IFT +QCDAINRLVCYFTLPLFT+EFTA
Sbjct: 1   MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           HVDPF  NYR IAAD LSK+II  VLALWAK S+KGSYCWSITSFSLCTLT+SLVVGVPL
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGSYCWSITSFSLCTLTNSLVVGVPL 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEAS 180
           AKAMYGQ AVDLVVQ SV QAIVWL +LL VLE R+AG +      V  D    IN E+ 
Sbjct: 121 AKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVD---NINIESG 177

Query: 181 SR-------PDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIM 233
            R         F  +M LVWLK+A NPN Y+CI GIAWAF+SNRWH E+P I+EGSILIM
Sbjct: 178 KRETVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIM 237

Query: 234 SRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLR 293
           S+AGTGTAMF+MGIFMA QEKLI CGTSLT+ GMVLKFIAGPAAMAIG+I +GLHGDVLR
Sbjct: 238 SKAGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLR 297

Query: 294 VAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH 347
           VAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGM+VSLP+++AY+A LEF H
Sbjct: 298 VAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMLVSLPVLVAYYAALEFIH 351

May act as a transmembrane component of the auxin efflux carrier.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5JLM1|PIN6_ORYSJ Probable auxin efflux carrier component 6 OS=Oryza sativa subsp. japonica GN=PIN6 PE=2 SV=1

 Score =  443 bits (1139), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/364 (63%), Positives = 272/364 (74%), Gaps = 24/364 (6%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MIGW DVYKVV A VPLY AL LGYGSV+WWRIFT EQCDA+NRLV +F LP FT EFT 
Sbjct: 1   MIGWGDVYKVVAATVPLYFALFLGYGSVRWWRIFTREQCDAVNRLVAFFALPFFTFEFTL 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKG--SYCWSITSFSLCTLTSSLVVGV 118
           H DPF+ NYR +AAD +SK +I  V+  WA+  SKG  +  WSITSFSL TLT+SLVVGV
Sbjct: 61  HTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSWSITSFSLSTLTNSLVVGV 120

Query: 119 PLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVD---------K 169
           P+A+AMYG+ A  LVVQ SV QAIVWL +LL VLE+R+A    A  ++VD         K
Sbjct: 121 PMARAMYGEWAQQLVVQLSVFQAIVWLTLLLFVLEVRKA----AIGMYVDGAEAAAAAGK 176

Query: 170 DLEGTINAEASS---------RPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHF 220
           D+E    A A+          +P  W L+K+V  K+A NPN YA   GI WA ++NR H 
Sbjct: 177 DVEAAGAAAAAGTVVVAAAAGKPSLWALVKVVAHKLARNPNTYASFVGITWACLANRLHI 236

Query: 221 EMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAI 280
            +PS  EGS+LIMS++GTG AMFSMG+FMA QEK+IACGTS    G+VLKF  GPAAMAI
Sbjct: 237 ALPSAFEGSVLIMSKSGTGMAMFSMGLFMAQQEKIIACGTSFAALGLVLKFALGPAAMAI 296

Query: 281 GAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYF 340
           G+IA+GL GDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGM+VSLPL++ ++
Sbjct: 297 GSIAVGLRGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMLVSLPLLVGFY 356

Query: 341 AILE 344
            +LE
Sbjct: 357 IVLE 360

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZIB5|PIN4_ORYSJ Probable auxin efflux carrier component 4 OS=Oryza sativa subsp. japonica GN=PIN4 PE=2 SV=1

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/369 (53%), Positives = 245/369 (66%), Gaps = 24/369 (6%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MIGW DVYKVV AM PLY AL LGYGSV+WWR FT EQC AIN +V YF++P FT +F  
Sbjct: 1   MIGWGDVYKVVGAMAPLYFALGLGYGSVRWWRFFTAEQCAAINTMVVYFSMPFFTFDFVV 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGS------YCWSITSFSLCTLTSSL 114
             DPF  NYR IAADA+SK I    +A WA+     +        WSIT FSL  L ++L
Sbjct: 61  RTDPFAMNYRVIAADAVSKAIAIAAMAAWARTRCGCAAAKAGAQSWSITGFSLAALNNTL 120

Query: 115 VVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGT 174
           VVGVPL  AMYG+ A DLVVQ +V+Q++VW P+LL+  E+R+A     G       +  +
Sbjct: 121 VVGVPLLDAMYGRWAQDLVVQIAVVQSMVWFPLLLMAFELRKAWVVGGGGGVGPAVMSSS 180

Query: 175 INAEASS------------------RPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSN 216
              E  S                  R  FW   + V LK+A NPN YA + G+ WA ++ 
Sbjct: 181 SPPEKQSDVEMNGAVVAAPGGGGGVRLPFWATARTVGLKLARNPNVYASVLGVVWACIAY 240

Query: 217 RWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPA 276
           RWH  +P I+ GS+ +MSR GTG +MFSMG+FM  QE++IACG  LT  GM L+F+AGP 
Sbjct: 241 RWHLSLPGIVTGSLQVMSRTGTGMSMFSMGLFMGQQERVIACGAGLTALGMALRFVAGPL 300

Query: 277 AMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLM 336
           A  +GA A+GL GDVL +AIIQAALPQSI SF+FAKEYGLHADVLSTAVIFG ++SLP++
Sbjct: 301 ATLVGAAALGLRGDVLHLAIIQAALPQSIASFVFAKEYGLHADVLSTAVIFGTLISLPIL 360

Query: 337 IAYFAILEF 345
           IAY+A+L F
Sbjct: 361 IAYYAVLGF 369

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LFP6|PIN5_ARATH Putative auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=3 SV=1

 Score =  253 bits (646), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 215/367 (58%), Gaps = 22/367 (5%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MI W D+Y VV A VPLYV++ LG+ S +  ++F+ EQC  IN+ V  F++PL + +  +
Sbjct: 1   MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLA----LWAKCSSKGSYC-WSITSFSLCTLTSSLV 115
             +PFK + + I +D L K ++ +VLA     W     +G    W IT  S+  L ++L+
Sbjct: 61  ENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLI 120

Query: 116 VGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEI---RRAGTTDAGAVHVDKDLE 172
           +G+P+  A+YG  A  ++ Q  V+Q+++W  +LL + E+   R   ++ A   H   D E
Sbjct: 121 LGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAARALPSSGASLEHTGNDQE 180

Query: 173 GT-----------INAEASSRPDFWHLMKLV---WLKVAMNPNAYACIFGIAWAFVSNRW 218
                            A  R      MK++   W K+ +NPN YA + GI WA +  R 
Sbjct: 181 EANIEDEPKEEEDEEEVAIVRTRSVGTMKILLKAWRKLIINPNTYATLIGIIWATLHFRL 240

Query: 219 HFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAM 278
            + +P +++ SI ++S  G G AMFS+G+FMASQ  +IACGT + I  M+LKF+ GPA M
Sbjct: 241 GWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIACGTKMAIITMLLKFVLGPALM 300

Query: 279 AIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIA 338
              A  + L   + +VAI+QAALPQ +  F+FAKEY LH +++ST VIFGM+++LP  +A
Sbjct: 301 IASAYCIRLKSTLFKVAILQAALPQGVVPFVFAKEYNLHPEIISTGVIFGMLIALPTTLA 360

Query: 339 YFAILEF 345
           Y+ +L+ 
Sbjct: 361 YYFLLDL 367

May act as a component of the auxin efflux carrier.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VQY3|PIN5_ORYSJ Probable auxin efflux carrier component 5 OS=Oryza sativa subsp. japonica GN=PIN5 PE=2 SV=1

 Score =  228 bits (581), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/424 (31%), Positives = 209/424 (49%), Gaps = 81/424 (19%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MI   +VY+VV AM PLY A  LGYGSV+W + F+ EQC  IN  V  + +P+   +  +
Sbjct: 1   MITGSEVYQVVEAMAPLYTAAALGYGSVRWLKAFSNEQCAGINHFVALYAVPVLIFDMVS 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVL---ALWAKCSS-----------KGSYCWSITSFS 106
             + +K N R IAAD L K ++ + L   ALW +  +                W IT FS
Sbjct: 61  TNNVYKMNGRLIAADTLQKAVLLLGLMAWALWERSRARGAGAKAKAAVSSPLQWVITCFS 120

Query: 107 LCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLE------------- 153
           + +L +++++GVPL   MYG ++ DL+ Q  V+Q  +W  V++ + E             
Sbjct: 121 VASLPNTIIMGVPLLNGMYGPVSKDLMKQIVVMQFCIWYNVIIFLYEYMAARRSASAPPP 180

Query: 154 -----------------IRRAGTTDAGAVHVDKDLEGTINAE------------------ 178
                               A  T+  AV  D+  E  +N E                  
Sbjct: 181 ASSEGSAKISPSSPVKAAAAAADTNGNAVAADRPQEVAVNIEITEMAASTARDGVSGETT 240

Query: 179 -------------------ASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWH 219
                              ++  P   H++ +   K+   PN YA   G+ W+ ++ +  
Sbjct: 241 AAAKEVSSGEVAPVEEEEASAPAPSMKHVIWMAVKKLLQIPNTYASFLGLIWSLIAFKCG 300

Query: 220 FEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMA 279
           F MP I+E S+  +     G +MFS G F+A Q + + CG  +  F MV+KF+ GP  M 
Sbjct: 301 FSMPKIVEDSLFTIRTTAVGLSMFSSGTFIARQSRFVPCGYKIASFSMVIKFLIGPVVML 360

Query: 280 IGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAY 339
             ++ +G+HG +L +A++QAALP ++TSF++A+EY +HAD++ST VI G+ +SLP+ I Y
Sbjct: 361 FASLVIGMHGTLLHIAVVQAALPLAVTSFVYAEEYKVHADIMSTGVILGIFISLPVTIVY 420

Query: 340 FAIL 343
           + +L
Sbjct: 421 YILL 424

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1

 Score =  191 bits (484), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 115/153 (75%)

Query: 191 LVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMA 250
           +VW K+  NPN Y+ + G+ WA V+ RWH  MP I++ SI I+S AG G AMFS+G+FMA
Sbjct: 462 MVWRKLIRNPNTYSSLIGLIWALVAYRWHVAMPKILQQSISILSDAGLGMAMFSLGLFMA 521

Query: 251 SQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIF 310
            Q K+IACG S+  F M ++FI GPA MA+  IA+GLHGD+LR+AI+QAALPQ I  F+F
Sbjct: 522 LQPKIIACGNSVATFAMAVRFITGPAIMAVAGIAIGLHGDLLRIAIVQAALPQGIVPFVF 581

Query: 311 AKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
           AKEY +H  +LST VIFGM+++LP+ + Y+ +L
Sbjct: 582 AKEYNVHPTILSTGVIFGMLIALPITLVYYILL 614

Acts as a component of the auxin efflux carrier. Plays a role in generating a sink for auxin into columella cells. Maintains the endogenous auxin gradient, which is essential for correct root patterning.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU77|PIN2_ARATH Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 119/153 (77%)

Query: 191 LVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMA 250
           +VW K+  NPN Y+ +FG+AW+ VS +W+ +MP+IM GSI I+S AG G AMFS+G+FMA
Sbjct: 493 MVWRKLIRNPNTYSSLFGLAWSLVSFKWNIKMPTIMSGSISILSDAGLGMAMFSLGLFMA 552

Query: 251 SQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIF 310
            Q K+IACG S+  F M ++F+ GPA +A  +IA+G+ GD+L +AI+QAALPQ I  F+F
Sbjct: 553 LQPKIIACGKSVAGFAMAVRFLTGPAVIAATSIAIGIRGDLLHIAIVQAALPQGIVPFVF 612

Query: 311 AKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
           AKEY +H D+LSTAVIFGM+V+LP+ + Y+ +L
Sbjct: 613 AKEYNVHPDILSTAVIFGMLVALPVTVLYYVLL 645

Acts as a component of the auxin efflux carrier. Seems to be involved in the root-specific auxin transport, and mediates the root gravitropism. Its particular localization suggest a role in the translocation of auxin towards the elongation zone.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VP70|PIN3A_ORYSJ Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1

 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 114/153 (74%)

Query: 191 LVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMA 250
           +VW K+  NPN Y+ + G+AW+ V+ RWH  MP+I+E SI I+S AG G AMFS+G+FMA
Sbjct: 464 MVWRKLIRNPNTYSSLLGLAWSLVAFRWHVSMPAIVEKSISILSDAGLGMAMFSLGLFMA 523

Query: 251 SQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIF 310
            Q  +IACG S  +  M ++F+AGPA MA  +IA+GL G +L VAI+QAALPQ I  F+F
Sbjct: 524 LQPSIIACGKSAAVVSMAVRFLAGPAVMAAASIAIGLRGTLLHVAIVQAALPQGIVPFVF 583

Query: 311 AKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
           AKEY +H  +LSTAVIFGM+++LP+ + Y+ +L
Sbjct: 584 AKEYNVHPAILSTAVIFGMLIALPITLLYYILL 616

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 114/153 (74%)

Query: 191 LVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMA 250
           +VW K+  NPN Y+ + G+ W+ V  RW+FEMP+I+  SI I+S AG G AMFS+G+FMA
Sbjct: 438 MVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIILKSISILSDAGLGMAMFSLGLFMA 497

Query: 251 SQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIF 310
            Q ++IACG  +  F M ++F+ GPA MA  +IA+GL G +L VAI+QAALPQ I  F+F
Sbjct: 498 LQPRIIACGNKVATFAMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVF 557

Query: 311 AKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
           AKEY +H D+LSTAVIFGM+++LP+ + Y+ +L
Sbjct: 558 AKEYSVHPDILSTAVIFGMLIALPITLVYYILL 590

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C0X5|PIN1B_ORYSJ Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/190 (45%), Positives = 126/190 (66%)

Query: 154 IRRAGTTDAGAVHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAF 213
           + + G+     +    D EG   A   +      ++ +VW K+  NPN Y+ + G+ W+ 
Sbjct: 363 LSKLGSNSTAQLRPKDDGEGMAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSL 422

Query: 214 VSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIA 273
           VS RW  EMP+I+  SI I+S AG G AMFS+G+FMA Q ++IACG SL  + M ++F+ 
Sbjct: 423 VSYRWGIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLV 482

Query: 274 GPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSL 333
           GPA MA  +IA+GL G +L +AI+QAALPQ I  F+FAKEY +H ++LSTAVIFGM+++L
Sbjct: 483 GPAVMAAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIAL 542

Query: 334 PLMIAYFAIL 343
           P+ + Y+ +L
Sbjct: 543 PITLVYYILL 552

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
225431003	356	PREDICTED: putative auxin efflux carrier	0.997	0.971	0.781	1e-159
255543120	357	conserved hypothetical protein [Ricinus	1.0	0.971	0.756	1e-153
224128940	346	auxin efflux carrier component [Populus	0.991	0.994	0.776	1e-152
240256298	351	putative auxin efflux carrier component	0.991	0.980	0.759	1e-151
224144932	346	auxin efflux carrier component [Populus	0.997	1.0	0.755	1e-150
297807677	352	hypothetical protein ARALYDRAFT_326097 [	0.991	0.977	0.757	1e-147
449477700	371	PREDICTED: putative auxin efflux carrier	0.994	0.929	0.706	1e-146
449470249	371	PREDICTED: putative auxin efflux carrier	0.994	0.929	0.703	1e-145
357507711	363	Auxin Efflux Carrier [Medicago truncatul	1.0	0.955	0.702	1e-143
356568479	369	PREDICTED: putative auxin efflux carrier	0.994	0.934	0.663	1e-134

>gi|225431003|ref|XP_002279191.1| PREDICTED: putative auxin efflux carrier component 8 [Vitis vinifera] gi|297735290|emb|CBI17652.3| unnamed protein product [Vitis vinifera]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/357 (78%), Positives = 312/357 (87%), Gaps = 11/357 (3%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MIGWEDVYKVVVAM+PLYVAL+LGYGSVKWWRIFT +QCDAINRLVCYFTLPLFT EFTA
Sbjct: 1   MIGWEDVYKVVVAMLPLYVALVLGYGSVKWWRIFTPDQCDAINRLVCYFTLPLFTFEFTA 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           HVDPFK NY  I ADA+SKLII +VLALWAKCSSKGSYCWSITSFSL TLT+SLVVGVPL
Sbjct: 61  HVDPFKMNYLFIGADAVSKLIIVLVLALWAKCSSKGSYCWSITSFSLATLTNSLVVGVPL 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTT--------DAGAVHVD--KD 170
            KAMYG + VDLVVQ SV+QAI+WL +LL VLE RR GT         D+G + V+  KD
Sbjct: 121 IKAMYGPLGVDLVVQSSVVQAIIWLTLLLFVLEFRRTGTGISSNTTMGDSGVIEVEPGKD 180

Query: 171 LEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSI 230
           LE T     S+R  FW LM+ VWLK+A NPN+YACI GI WAF++NRWHFEMPSIMEGSI
Sbjct: 181 LE-TNEMVVSTRLSFWSLMRKVWLKLAQNPNSYACIIGIVWAFIANRWHFEMPSIMEGSI 239

Query: 231 LIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGD 290
           LIMSRAGTGTAMFSMG+FMA QEK+IACGT+LT+FGMVL+FIAGPAAMAIGAIA+GLHGD
Sbjct: 240 LIMSRAGTGTAMFSMGLFMAMQEKIIACGTTLTVFGMVLRFIAGPAAMAIGAIAVGLHGD 299

Query: 291 VLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH 347
           VLR+AIIQAA+PQSITSFI+AKEYGLHADVLSTAVIFGMIVSLPL++ Y+A+LEF +
Sbjct: 300 VLRIAIIQAAVPQSITSFIYAKEYGLHADVLSTAVIFGMIVSLPLLVGYYAVLEFLN 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543120|ref|XP_002512623.1| conserved hypothetical protein [Ricinus communis] gi|223548584|gb|EEF50075.1| conserved hypothetical protein [Ricinus communis]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/357 (75%), Positives = 309/357 (86%), Gaps = 10/357 (2%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MIGWEDVYKV+VAMVPLYVAL+LGYGS++WW+IFT EQ  A+NRLVCYFTLPLFT EFTA
Sbjct: 1   MIGWEDVYKVIVAMVPLYVALLLGYGSIRWWKIFTPEQGGAVNRLVCYFTLPLFTFEFTA 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           HVDPFK NY  I ADA+SK II +VLA WAK SSKGSY WSITSFSL TLT+SLVVGVPL
Sbjct: 61  HVDPFKMNYLFIGADAISKFIIVVVLACWAKFSSKGSYTWSITSFSLSTLTNSLVVGVPL 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRR------AGTTDAGAVHVDKDLEGT 174
            KAMYG MAVDLVVQ SV+QAI+WL +LL VLE RR      +   +  + +++KDLEG+
Sbjct: 121 MKAMYGPMAVDLVVQSSVVQAIIWLTILLFVLEFRRTRLDISSSNYNKNSDNLEKDLEGS 180

Query: 175 INAE----ASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSI 230
            +A     +SS P FW LMK+V +K+AMNPN+YACI G+ WAF++NRWHFEMPSIMEGSI
Sbjct: 181 GSAGNMAISSSGPSFWVLMKVVGVKLAMNPNSYACILGLVWAFIANRWHFEMPSIMEGSI 240

Query: 231 LIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGD 290
           LIMS+AGTGTAMFSMGIFMA QEK+IACG  LT+ GM+L+FIAGPAAMAIG+IA+GLHGD
Sbjct: 241 LIMSKAGTGTAMFSMGIFMAVQEKVIACGAGLTVVGMILRFIAGPAAMAIGSIAVGLHGD 300

Query: 291 VLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH 347
           VLRVAIIQAALPQSITSFIFAKEYGLHA+VLSTAVIFGMIVSLP++IAY+AILEFAH
Sbjct: 301 VLRVAIIQAALPQSITSFIFAKEYGLHAEVLSTAVIFGMIVSLPVLIAYYAILEFAH 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128940|ref|XP_002329004.1| auxin efflux carrier component [Populus trichocarpa] gi|222839238|gb|EEE77589.1| auxin efflux carrier component [Populus trichocarpa]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/345 (77%), Positives = 306/345 (88%), Gaps = 1/345 (0%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MIGWEDVYKVVVAMVPLYVAL+LGYGSV+WW++FT EQC AINR VCYFTLPLFT EFTA
Sbjct: 1   MIGWEDVYKVVVAMVPLYVALVLGYGSVRWWKVFTPEQCGAINRFVCYFTLPLFTFEFTA 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           HVDPFK NYR I ADA+SK+II +VLA WAKCSSKGSY WSITSFSLCTLT+SLVVGVP+
Sbjct: 61  HVDPFKMNYRFIGADAVSKVIIVVVLAFWAKCSSKGSYSWSITSFSLCTLTNSLVVGVPI 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEAS 180
            KAMYG  AVDLVVQ SVIQAI+WL +LLLVLE RR G   +   + DKDLEG+++   S
Sbjct: 121 IKAMYGPAAVDLVVQSSVIQAIIWLTLLLLVLEFRRTGLGFSSN-NSDKDLEGSVDNTES 179

Query: 181 SRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGT 240
           SRP FW LM+ VW+K+AMNPN+YACI G+ WAF+SNRWHFEMP++MEGSILIMS+AGTGT
Sbjct: 180 SRPAFWCLMRTVWVKLAMNPNSYACIIGLVWAFISNRWHFEMPAMMEGSILIMSKAGTGT 239

Query: 241 AMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAA 300
           AMFSMGIFMA QEK+I+CG SL + GM+L+FIAGPAAMAIG+IA+GL GDVLRVAIIQAA
Sbjct: 240 AMFSMGIFMALQEKVISCGASLAVIGMILRFIAGPAAMAIGSIAVGLQGDVLRVAIIQAA 299

Query: 301 LPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEF 345
           LPQSITSFIFAKEYGLHA+VLSTAVIFGM+ +LP++I Y+AILEF
Sbjct: 300 LPQSITSFIFAKEYGLHAEVLSTAVIFGMLAALPVLITYYAILEF 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256298|ref|NP_197157.4| putative auxin efflux carrier component 8 [Arabidopsis thaliana] gi|42558880|sp|Q9FFD0.2|PIN8_ARATH RecName: Full=Putative auxin efflux carrier component 8; Short=AtPIN8 gi|332004922|gb|AED92305.1| putative auxin efflux carrier component 8 [Arabidopsis thaliana]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/354 (75%), Positives = 296/354 (83%), Gaps = 10/354 (2%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MI   DVYKV+ AMVPLYVAL+LGYGSVKWW IFT +QCDAINRLVCYFTLPLFT+EFTA
Sbjct: 1   MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           HVDPF  NYR IAAD LSK+II  VLALWAK S+KGSYCWSITSFSLCTLT+SLVVGVPL
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGSYCWSITSFSLCTLTNSLVVGVPL 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEAS 180
           AKAMYGQ AVDLVVQ SV QAIVWL +LL VLE R+AG +      V  D    IN E+ 
Sbjct: 121 AKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVD---NINIESG 177

Query: 181 SR-------PDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIM 233
            R         F  +M LVWLK+A NPN Y+CI GIAWAF+SNRWH E+P I+EGSILIM
Sbjct: 178 KRETVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIM 237

Query: 234 SRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLR 293
           S+AGTGTAMF+MGIFMA QEKLI CGTSLT+ GMVLKFIAGPAAMAIG+I +GLHGDVLR
Sbjct: 238 SKAGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLR 297

Query: 294 VAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH 347
           VAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGM+VSLP+++AY+A LEF H
Sbjct: 298 VAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMLVSLPVLVAYYAALEFIH 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144932|ref|XP_002325466.1| auxin efflux carrier component [Populus trichocarpa] gi|222862341|gb|EEE99847.1| auxin efflux carrier component [Populus trichocarpa]

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/347 (75%), Positives = 299/347 (86%), Gaps = 1/347 (0%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MIGW D+YKVVVAMVPLYVALMLGYGSV+WW++FT EQC AINR VCYFTLP FT EFTA
Sbjct: 1   MIGWADIYKVVVAMVPLYVALMLGYGSVRWWKVFTPEQCGAINRFVCYFTLPFFTFEFTA 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           HVDPFK NY  I ADA+SKLII +VLA+WAK S KGSY WSITSFSLCTLT+SLV+GVPL
Sbjct: 61  HVDPFKMNYLFIGADAISKLIIVVVLAVWAKWSGKGSYGWSITSFSLCTLTNSLVLGVPL 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEAS 180
            KAMYG  AVDLVVQ SVIQ+I+WL +LLLVLE RR+G     + + DKDLEG  ++  S
Sbjct: 121 IKAMYGPTAVDLVVQSSVIQSIIWLTMLLLVLEFRRSGL-GVSSSNPDKDLEGNADSTVS 179

Query: 181 SRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGT 240
           SRP FW LMK V +K+AMNPN+YACI G+ WAF++ RW FEMPSIMEGSILIMS+ GTGT
Sbjct: 180 SRPAFWCLMKTVGVKLAMNPNSYACIIGLVWAFIAKRWRFEMPSIMEGSILIMSKTGTGT 239

Query: 241 AMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAA 300
           AMFSMGIFMA QEK+IACG SLT+ GMVL+FIAGPAAMAIG+IA+GL GDVLRVAIIQAA
Sbjct: 240 AMFSMGIFMALQEKVIACGASLTVIGMVLRFIAGPAAMAIGSIAVGLRGDVLRVAIIQAA 299

Query: 301 LPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH 347
            PQ+I SFIFA+EYGLHA+VLSTAVIFG IV+LP++IAY+AIL+F H
Sbjct: 300 FPQAIISFIFAQEYGLHAEVLSTAVIFGTIVALPVLIAYYAILDFVH 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807677|ref|XP_002871722.1| hypothetical protein ARALYDRAFT_326097 [Arabidopsis lyrata subsp. lyrata] gi|297317559|gb|EFH47981.1| hypothetical protein ARALYDRAFT_326097 [Arabidopsis lyrata subsp. lyrata]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/355 (75%), Positives = 298/355 (83%), Gaps = 11/355 (3%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MI   DVYKV+ AMVPLYVAL+LGYGSVKWW IFT +QCDAINRLVCYFTLPLFT+EFTA
Sbjct: 1   MISCGDVYKVIEAMVPLYVALILGYGSVKWWNIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           HVDPF  NYR IAAD LSK+II  VLA WAK S+KGSYCWSITSFSLCTLT+SLVVGVPL
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLAFWAKYSNKGSYCWSITSFSLCTLTNSLVVGVPL 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEAS 180
           AKAMYGQ AVDLVVQ SV QAIVWL +LL VLE+R+AG++   +  V  D   +IN E  
Sbjct: 121 AKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLELRKAGSSSNYSSDVKVD---SINIENG 177

Query: 181 SR--------PDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILI 232
            R          F  +M LVWLK+A NPN Y+CI GIAWA +SNRWH EMP I+EGSILI
Sbjct: 178 KREIVVVGEEKSFLEVMSLVWLKLATNPNCYSCILGIAWALISNRWHLEMPGILEGSILI 237

Query: 233 MSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVL 292
           MS+AGTGTAMF+MGIFMA QEKLI CGTSLT+ GMVLKFIAGPAAMAIG+IA+GLHGDVL
Sbjct: 238 MSKAGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIALGLHGDVL 297

Query: 293 RVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH 347
           RVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGM+VSLP+++AY+A LEF H
Sbjct: 298 RVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMLVSLPVLVAYYAALEFIH 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477700|ref|XP_004155098.1| PREDICTED: putative auxin efflux carrier component 8-like [Cucumis sativus]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/368 (70%), Positives = 298/368 (80%), Gaps = 23/368 (6%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MIGW+DVYKVV AM PLY AL+LGYGSVKWW+IF+ +QCDAIN+LVCYFTLPLFT +FT+
Sbjct: 1   MIGWQDVYKVVAAMAPLYFALILGYGSVKWWKIFSTQQCDAINKLVCYFTLPLFTFDFTS 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           H+DPF  N+  IAADA+ KLII +VL  WAKC++KGSYCWSITSFSL TLT++LV+GVPL
Sbjct: 61  HIDPFHLNFPFIAADAIGKLIIVLVLTFWAKCTTKGSYCWSITSFSLSTLTNALVIGVPL 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAG------------TTDAGAVHV- 167
           AK MYGQMAVDLVVQ SV+QAIVWL +LL VLE+RR G             ++   V V 
Sbjct: 121 AKVMYGQMAVDLVVQGSVVQAIVWLTILLFVLELRRTGLDLVAAEASSGVVSEEKTVEVG 180

Query: 168 ---DKDLEGT-------INAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNR 217
              +KDLEG          +  S RP    LMK VW+K+A NPN+YAC  G AWAFV+ R
Sbjct: 181 GEGEKDLEGEDMEVEEMRRSSKSHRPSLKPLMKKVWVKMAGNPNSYACTIGFAWAFVAKR 240

Query: 218 WHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAA 277
           WH EMPSIMEGSILIMS+AG GTAMF+MGIFMA QEKLIACG +LTI GMVLKFIAGPAA
Sbjct: 241 WHVEMPSIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGPTLTIVGMVLKFIAGPAA 300

Query: 278 MAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMI 337
           MAIG+IAMGLHGDVLRVAIIQAA+PQSITSFI+AKEYGLHADVLSTAVIFG IVSLP+++
Sbjct: 301 MAIGSIAMGLHGDVLRVAIIQAAVPQSITSFIYAKEYGLHADVLSTAVIFGAIVSLPVLV 360

Query: 338 AYFAILEF 345
           AY+A LEF
Sbjct: 361 AYYAALEF 368

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470249|ref|XP_004152830.1| PREDICTED: putative auxin efflux carrier component 8-like [Cucumis sativus]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/368 (70%), Positives = 296/368 (80%), Gaps = 23/368 (6%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MIGW+DVYKVV AM PLY AL+LGYGSVKWW+IF+ +QCDAIN+LVCYFTLPLFT +FT+
Sbjct: 1   MIGWQDVYKVVAAMAPLYFALILGYGSVKWWKIFSTQQCDAINKLVCYFTLPLFTFDFTS 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           H+DPF  N+  IAADA+ KLII +VLA WAKC++KGSYCWSITSFSL TLT++LV+GVPL
Sbjct: 61  HIDPFHLNFPFIAADAIGKLIIVLVLAFWAKCTTKGSYCWSITSFSLSTLTNALVIGVPL 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAG------TTDAGAVHVDKDLEGT 174
           AK MYGQMAVDLVVQ SV+QAIVWL +LL VLE+RR G         +G V  +K +E  
Sbjct: 121 AKVMYGQMAVDLVVQGSVVQAIVWLTILLFVLELRRTGLDLVAAEASSGVVSEEKTVEVG 180

Query: 175 INAEA-----------------SSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNR 217
              E                  S RP    LMK VW+K+A NPN+YAC  G AWAFV+ R
Sbjct: 181 GEGEKDLEGEGMEVEEMRRSSKSHRPSLKPLMKKVWVKMAGNPNSYACTIGFAWAFVAKR 240

Query: 218 WHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAA 277
           WH EMPSIMEGSILIMS+AG GTAMF+MGIFMA QEKLIACG +LTI GMVLKFIAGPAA
Sbjct: 241 WHVEMPSIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGPTLTIVGMVLKFIAGPAA 300

Query: 278 MAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMI 337
           MAIG+IAMGLHGDVLRVAIIQAA+PQSITSFI+AKEYGLHADVLSTAVIFG IVSLP+++
Sbjct: 301 MAIGSIAMGLHGDVLRVAIIQAAVPQSITSFIYAKEYGLHADVLSTAVIFGAIVSLPVLV 360

Query: 338 AYFAILEF 345
           AY+A LEF
Sbjct: 361 AYYAALEF 368

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507711|ref|XP_003624144.1| Auxin Efflux Carrier [Medicago truncatula] gi|49035698|gb|AAT48629.1| putative auxin efflux carrier protein 9 [Medicago truncatula] gi|87162565|gb|ABD28360.1| Auxin Efflux Carrier [Medicago truncatula] gi|355499159|gb|AES80362.1| Auxin Efflux Carrier [Medicago truncatula]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/363 (70%), Positives = 294/363 (80%), Gaps = 16/363 (4%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MIGWEDVYKV+VA+VPLY AL+LGYGSV+WW+IFT EQCDAIN+LVCYFTLPLF  EFTA
Sbjct: 1   MIGWEDVYKVIVAVVPLYFALILGYGSVRWWKIFTREQCDAINKLVCYFTLPLFAFEFTA 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           H+DPFK N+  I AD LSKLII  V+ALWAKCSSK SY WSITSFSLCTLT+SLVVG+P+
Sbjct: 61  HIDPFKMNFLFIGADTLSKLIIVAVIALWAKCSSKVSYSWSITSFSLCTLTNSLVVGIPM 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAG------TTDAGAVHVD------ 168
            K MYG M VDLVVQ SV+QAI+WL +LL VLE RR G      T    A  +       
Sbjct: 121 VKPMYGPMGVDLVVQASVVQAIIWLTLLLFVLEFRRTGIEGTITTLKPKASSISNVTCEG 180

Query: 169 ---KDLEGTINAE-ASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPS 224
              KD+E     E  SSR  F  LMK VWLK+  NPN+Y C+ GI+WAF+SNRW+ E+PS
Sbjct: 181 EESKDVEANNIVEYTSSRLPFLQLMKRVWLKLIANPNSYGCVIGISWAFISNRWNLELPS 240

Query: 225 IMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIA 284
           ++EGSILIMS+AGTGTAMFSMGIFMA QEK+I+CG SLT+FG+VLKFIAGPAAMAI A  
Sbjct: 241 MVEGSILIMSKAGTGTAMFSMGIFMALQEKVISCGPSLTVFGLVLKFIAGPAAMAISAFI 300

Query: 285 MGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILE 344
           +GL GDVLR+AIIQAA+PQSITSFIFAKEY LHA+VLSTAVIFGMIVSLP+++AY+AILE
Sbjct: 301 VGLRGDVLRIAIIQAAVPQSITSFIFAKEYELHAEVLSTAVIFGMIVSLPILVAYYAILE 360

Query: 345 FAH 347
           F H
Sbjct: 361 FVH 363

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568479|ref|XP_003552438.1| PREDICTED: putative auxin efflux carrier component 8-like [Glycine max]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/371 (66%), Positives = 291/371 (78%), Gaps = 26/371 (7%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MIGWEDVYKVVVA+VPLY AL+LGYGS+KWW IFT EQC+AIN+LVCYFTLPLF  EFTA
Sbjct: 1   MIGWEDVYKVVVAVVPLYFALLLGYGSLKWWNIFTKEQCEAINKLVCYFTLPLFIFEFTA 60

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
           H+DPFK N+  IAAD +SK II +VLALWAKC+ K ++CWSI SFSLC LT+++VVGVP+
Sbjct: 61  HIDPFKMNFSFIAADTISKFIIMVVLALWAKCTPKCTFCWSIISFSLCNLTNAVVVGVPM 120

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRR------------------------ 156
            K MYG + VDLVVQ SV+QA +WLP+LL V+E  R                        
Sbjct: 121 VKPMYGALGVDLVVQSSVLQATIWLPLLLFVMEFWRTGIEGTTTTTVKPRSKTMINKNEG 180

Query: 157 AGTTDAGAVHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSN 216
            G  D  AV V ++L   +    +SR  F  +MKLVW K+A NPN+Y C+ GI+WAF+SN
Sbjct: 181 GGGKDVEAVDVKEEL--MLEESVTSRLPFCKVMKLVWRKLATNPNSYGCVIGISWAFISN 238

Query: 217 RWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPA 276
           RW+ EMPS++EGSI IMS+AGTGTAMFSMGIFMA QEKLIACG S+T+ G+VLKFIAGPA
Sbjct: 239 RWNLEMPSMLEGSIQIMSKAGTGTAMFSMGIFMALQEKLIACGPSMTLIGLVLKFIAGPA 298

Query: 277 AMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLM 336
           A AIGAIA+GL GDVLRV IIQAA+PQSITSFIFAKEYGLH +VLSTAVIFGMIVSLP++
Sbjct: 299 ATAIGAIAVGLRGDVLRVVIIQAAVPQSITSFIFAKEYGLHPEVLSTAVIFGMIVSLPVL 358

Query: 337 IAYFAILEFAH 347
           +AY+AILEF H
Sbjct: 359 VAYYAILEFVH 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2171392	351	PIN5 "AT5G16530" [Arabidopsis	1.0	0.988	0.692	7e-125
TAIR|locus:2038781	616	PIN4 "AT2G01420" [Arabidopsis	0.449	0.253	0.487	1.1e-78
TAIR|locus:2175559	647	EIR1 "AT5G57090" [Arabidopsis	0.449	0.241	0.5	1.2e-77
TAIR|locus:2013975	640	PIN3 "AT1G70940" [Arabidopsis	0.449	0.243	0.493	7e-76
TAIR|locus:2201225	619	PIN7 "AT1G23080" [Arabidopsis	0.449	0.252	0.487	1.4e-74
TAIR|locus:2035037	622	PIN1 "AT1G73590" [Arabidopsis	0.449	0.250	0.461	6.7e-74
UNIPROTKB|Q5SMQ9	595	PIN1 "Auxin efflux carrier com	0.449	0.262	0.461	2.5e-73
TAIR|locus:2025312	570	PIN6 "AT1G77110" [Arabidopsis	0.449	0.273	0.461	1.7e-66
TAIR|locus:2147835	367	PIN8 "AT5G15100" [Arabidopsis	0.449	0.425	0.445	7.8e-62
UNIPROTKB|P0AA49	314	yfdV "YfdV AEC Transporter" [E	0.328	0.363	0.208	3.5e-05

TAIR|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)]

 Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
 Identities = 243/351 (69%), Positives = 269/351 (76%)

Query:     1 MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
             MI   DVYKV+ AMVPLYVAL+LGYGSVKWW IFT +QCDAINRLVCYFTLPLFT+EFTA
Sbjct:     1 MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query:    61 HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWXXXXXXXXXXXXXXVVGVPL 120
             HVDPF  NYR IAAD LSK+II  VLALWAK S+KGSYCW              VVGVPL
Sbjct:    61 HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGSYCWSITSFSLCTLTNSLVVGVPL 120

Query:   121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAG--TTDAGAVHVDK-DLE-GTIN 176
             AKAMYGQ AVDLVVQ SV QAIVWL +LL VLE R+AG  + +   V VD  ++E G   
Sbjct:   121 AKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVDNINIESGKRE 180

Query:   177 AEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRA 236
                     F  +M LVWLK+A NPN Y+CI GIAWAF+SNRWH E+P I+EGSILIMS+A
Sbjct:   181 TVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSKA 240

Query:   237 GTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFXXXXXXXXXXXXXXXLHGDVLRVAI 296
             GTGTAMF+MGIFMA QEKLI CGTSLT+ GMVLKF               LHGDVLRVAI
Sbjct:   241 GTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLHGDVLRVAI 300

Query:   297 IQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILEFAH 347
             IQAALPQSITSFIFAKEYGLHADVLSTAVIFGM+VSLP+++AY+A LEF H
Sbjct:   301 IQAALPQSITSFIFAKEYGLHADVLSTAVIFGMLVSLPVLVAYYAALEFIH 351

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0080161 "auxin transmembrane transporter activity" evidence=IDA

GO:0080162 "intracellular auxin transport" evidence=IDA

GO:0009555 "pollen development" evidence=IGI;IMP

TAIR|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
 Identities = 76/156 (48%), Positives = 106/156 (67%)

Query:   188 LMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGI 247
             ++ +VW K+  NPN Y+ + G+ WA V+ RWH  MP I++ SI I+S AG G AMFS+G+
Sbjct:   459 ILIMVWRKLIRNPNTYSSLIGLIWALVAYRWHVAMPKILQQSISILSDAGLGMAMFSLGL 518

Query:   248 FMASQEKLIACGTSLTIFGMVLKFXXXXXXXXXXXXXXXLHGDVLRVAIIQAALPQSITS 307
             FMA Q K+IACG S+  F M ++F               LHGD+LR+AI+QAALPQ I  
Sbjct:   519 FMALQPKIIACGNSVATFAMAVRFITGPAIMAVAGIAIGLHGDLLRIAIVQAALPQGIVP 578

Query:   308 FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
             F+FAKEY +H  +LST VIFGM+++LP+ + Y+ +L
Sbjct:   579 FVFAKEYNVHPTILSTGVIFGMLIALPITLVYYILL 614

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048364 "root development" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
 Identities = 78/156 (50%), Positives = 110/156 (70%)

Query:   188 LMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGI 247
             ++ +VW K+  NPN Y+ +FG+AW+ VS +W+ +MP+IM GSI I+S AG G AMFS+G+
Sbjct:   490 ILIMVWRKLIRNPNTYSSLFGLAWSLVSFKWNIKMPTIMSGSISILSDAGLGMAMFSLGL 549

Query:   248 FMASQEKLIACGTSLTIFGMVLKFXXXXXXXXXXXXXXXLHGDVLRVAIIQAALPQSITS 307
             FMA Q K+IACG S+  F M ++F               + GD+L +AI+QAALPQ I  
Sbjct:   550 FMALQPKIIACGKSVAGFAMAVRFLTGPAVIAATSIAIGIRGDLLHIAIVQAALPQGIVP 609

Query:   308 FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
             F+FAKEY +H D+LSTAVIFGM+V+LP+ + Y+ +L
Sbjct:   610 FVFAKEYNVHPDILSTAVIFGMLVALPVTVLYYVLL 645

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000323 "lytic vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=IMP;RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

TAIR|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 7.0e-76, Sum P(2) = 7.0e-76
 Identities = 77/156 (49%), Positives = 105/156 (67%)

Query:   188 LMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGI 247
             ++ +VW K+  NPN Y+ + G+ WA V+ RWH  MP I++ SI I+S AG G AMFS+G+
Sbjct:   483 ILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPKIIQQSISILSDAGLGMAMFSLGL 542

Query:   248 FMASQEKLIACGTSLTIFGMVLKFXXXXXXXXXXXXXXXLHGDVLRVAIIQAALPQSITS 307
             FMA Q KLIACG S+  F M ++F               L GD+LRVAI+QAALPQ I  
Sbjct:   543 FMALQPKLIACGNSVATFAMAVRFLTGPAVMAVAAIAIGLRGDLLRVAIVQAALPQGIVP 602

Query:   308 FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
             F+FAKEY +H  +LST VIFGM+++LP+ + Y+ +L
Sbjct:   603 FVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILL 638

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009606 "tropism" evidence=IMP

GO:0012506 "vesicle membrane" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0010082 "regulation of root meristem growth" evidence=IGI

GO:0048364 "root development" evidence=IGI;IMP

GO:0009630 "gravitropism" evidence=TAS

GO:0009986 "cell surface" evidence=IDA

GO:0048766 "root hair initiation" evidence=IMP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0009416 "response to light stimulus" evidence=IDA

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
 Identities = 76/156 (48%), Positives = 103/156 (66%)

Query:   188 LMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGI 247
             ++ +VW K+  NPN Y+ + G+ WA V+ RW   MP I++ SI I+S AG G AMFS+G+
Sbjct:   462 ILIMVWRKLIRNPNTYSSLIGLIWALVAFRWDVAMPKIIQQSISILSDAGLGMAMFSLGL 521

Query:   248 FMASQEKLIACGTSLTIFGMVLKFXXXXXXXXXXXXXXXLHGDVLRVAIIQAALPQSITS 307
             FMA Q KLIACG S   F M ++F               L GD+LRVAI+QAALPQ I  
Sbjct:   522 FMALQPKLIACGNSTATFAMAVRFFTGPAVMAVAAMAIGLRGDLLRVAIVQAALPQGIVP 581

Query:   308 FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
             F+FAKEY +H  +LST VIFGM+++LP+ + Y+ +L
Sbjct:   582 FVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILL 617

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0048364 "root development" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.7e-74, Sum P(2) = 6.7e-74
 Identities = 72/156 (46%), Positives = 104/156 (66%)

Query:   188 LMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGI 247
             ++ +VW K+  NPN+Y+ +FGI W+ +S +W+ EMP+++  SI I+S AG G AMFS+G+
Sbjct:   465 ILIMVWRKLIRNPNSYSSLFGITWSLISFKWNIEMPALIAKSISILSDAGLGMAMFSLGL 524

Query:   248 FMASQEKLIACGTSLTIFGMVLKFXXXXXXXXXXXXXXXLHGDVLRVAIIQAALPQSITS 307
             FMA   ++IACG     F   ++F               L G +L VAIIQAALPQ I  
Sbjct:   525 FMALNPRIIACGNRRAAFAAAMRFVVGPAVMLVASYAVGLRGVLLHVAIIQAALPQGIVP 584

Query:   308 FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
             F+FAKEY +H D+LSTAVIFGM+++LP+ + Y+ +L
Sbjct:   585 FVFAKEYNVHPDILSTAVIFGMLIALPITLLYYILL 620

GO:0005215 "transporter activity" evidence=ISS;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048367 "shoot system development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0048825 "cotyledon development" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0010338 "leaf formation" evidence=IGI

GO:0010358 "leaf shaping" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009624 "response to nematode" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048364 "root development" evidence=IMP;RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

UNIPROTKB|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 399 (145.5 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 72/156 (46%), Positives = 103/156 (66%)

Query:   188 LMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGI 247
             ++ +VW K+  NPN Y+ + G+ W+ V  RW+FEMP+I+  SI I+S AG G AMFS+G+
Sbjct:   438 ILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIVLKSISILSDAGLGMAMFSLGL 497

Query:   248 FMASQEKLIACGTSLTIFGMVLKFXXXXXXXXXXXXXXXLHGDVLRVAIIQAALPQSITS 307
             FMA Q  +IACG  +  + M ++F               L G +L VAI+QAALPQ I  
Sbjct:   498 FMALQPHIIACGNKVATYAMAVRFLAGPAVMAAASFAVGLRGTLLHVAIVQAALPQGIVP 557

Query:   308 FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
             F+FAKEY +H  +LSTAVIFGM+++LP+ + Y+ +L
Sbjct:   558 FVFAKEYSVHPSILSTAVIFGMLIALPITLVYYILL 593

GO:0005215 "transporter activity" evidence=IMP

GO:0006810 "transport" evidence=IMP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009921 "auxin efflux carrier complex" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0048830 "adventitious root development" evidence=IMP

TAIR|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
 Identities = 72/156 (46%), Positives = 101/156 (64%)

Query:   188 LMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGI 247
             ++ +V  K++ NPN Y+ + G+ W+ +S +W+  MP+I++ SI I+S AG G AMFS+G+
Sbjct:   413 ILTVVGRKLSRNPNTYSSLLGLVWSLISFKWNIPMPNIVDFSIKIISDAGLGMAMFSLGL 472

Query:   248 FMASQEKLIACGTSLTIFGMVLKFXXXXXXXXXXXXXXXLHGDVLRVAIIQAALPQSITS 307
             FMA Q K+I CG      GM+++F               L G  L  AI+QAALPQ I  
Sbjct:   473 FMALQPKMIPCGAKKATMGMLIRFISGPLFMAGASLLVGLRGSRLHAAIVQAALPQGIVP 532

Query:   308 FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
             F+FA+EY LH D+LST VIFGMIVSLP+ I Y+ +L
Sbjct:   533 FVFAREYNLHPDLLSTLVIFGMIVSLPVTILYYVLL 568

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
 Identities = 70/157 (44%), Positives = 102/157 (64%)

Query:   188 LMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGI 247
             L+K  W K+ +NPN YA + GI WA +  R  + +P +++ SI ++S  G G AMFS+G+
Sbjct:   211 LLK-AWRKLIINPNTYATLIGIIWATLHFRLGWNLPEMIDKSIHLLSDGGLGMAMFSLGL 269

Query:   248 FMASQEKLIACGTSLTIFGMVLKFXXXXXXXXXXXXXXXLHGDVLRVAIIQAALPQSITS 307
             FMASQ  +IACGT + I  M+LKF               L   + +VAI+QAALPQ +  
Sbjct:   270 FMASQSSIIACGTKMAIITMLLKFVLGPALMIASAYCIRLKSTLFKVAILQAALPQGVVP 329

Query:   308 FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAILE 344
             F+FAKEY LH +++ST VIFGM+++LP  +AY+ +L+
Sbjct:   330 FVFAKEYNLHPEIISTGVIFGMLIALPTTLAYYFLLD 366

GO:0005215 "transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

UNIPROTKB|P0AA49 yfdV "YfdV AEC Transporter" [Escherichia coli K-12 (taxid:83333)]

 Score = 88 (36.0 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
 Identities = 25/120 (20%), Positives = 57/120 (47%)

Query:   221 EMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFXXXXXXXXX 280
             ++P+  + +  ++++A +G A+F+ G+ +A+ +   +   +   F   LK          
Sbjct:   191 KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTF---LKLILMPLALLL 247

Query:   281 XXXXXXLHGDVLRVAIIQAALPQSITSFIFAKEYGLHA--DVLSTAV-IFGMIVSLPLMI 337
                   L+ + L++ ++  ALP + +  I A  + ++      S AV + G +V+ PL I
Sbjct:   248 VGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWI 307

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5JLM1	PIN6_ORYSJ	No assigned EC number	0.6318	0.9798	0.9366	yes	no
Q9FFD0	PIN8_ARATH	No assigned EC number	0.7598	0.9913	0.9800	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
pfam03547	321	pfam03547, Mem_trans, Membrane transport protein	3e-59
TIGR00946	321	TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam	2e-51
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	6e-16
PRK09903	314	PRK09903, PRK09903, putative transporter YfdV; Pro	4e-04

>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein

 Score =  193 bits (492), Expect = 3e-59
 Identities = 82/332 (24%), Positives = 148/332 (44%), Gaps = 15/332 (4%)

Query: 10  VVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNY 69
           VV A++P+++ ++LGY + K   I   +Q   IN+LV YF LPL      +     +   
Sbjct: 2   VVEAVLPVFLIMLLGYLAGKS-GILPPDQASGINKLVVYFALPLLIFSSISTNVTLEMIV 60

Query: 70  RCIAADALSKLIIAIVLALWAKCSS--KGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQ 127
                  L  LI+AI L +    S   K    W           ++  +G+PL  A+YG+
Sbjct: 61  DFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVLILTSAFPNTGFLGLPLLLALYGE 120

Query: 128 MAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEASSRPDFWH 187
             +   +   V+  I+   +   ++E R A              + +  +  +S      
Sbjct: 121 EGLSYAIISVVLGVIIIWTLGYFLIESRGAK------------RDKSEESGDTSGSMTLL 168

Query: 188 LMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGI 247
           ++ +V LK+ +NP  YA + G+    V        P  ++ SI I+  A    A+FS+G+
Sbjct: 169 ILIVVLLKLILNPPTYASLLGLILGLVGFLLPLIFPEFIQDSISILGDAAIPMALFSLGL 228

Query: 248 FMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITS 307
            +A  +   + G +     ++L+ I  P  M    + +GL G  L VAI++AALP +I  
Sbjct: 229 TLALGKLKSSLGAATATIHLILRLILMPLVMLGIVLLLGLRGLTLLVAILEAALPPAIVL 288

Query: 308 FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAY 339
            + A+ Y +  +  ST V +  +++L  +  +
Sbjct: 289 GVIAQLYNVDEEEASTVVFWTTLLALLTLPLW 320

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family

 Score =  172 bits (439), Expect = 2e-51
 Identities = 97/354 (27%), Positives = 148/354 (41%), Gaps = 45/354 (12%)

Query: 1   MIGWEDVYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA 60
           MI +  +  V+  +V + +  +LG    K + I   E    INR V  F LPL       
Sbjct: 1   MITYVILETVLPILVVILLGYILG----KRFGILDEEHASGINRFVINFALPLTIFHSI- 55

Query: 61  HVDPFKWNYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPL 120
                        AD L K    +VL LW   S   +  W IT               PL
Sbjct: 56  ---------STTLADILQKSQSPVVLFLWGAFSGSYALIWLIT--------------KPL 92

Query: 121 AKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIR------RAGTTDAGAV----HVDKD 170
            KA YG+++  L+V      A +  P+LL +           A   D GAV     +   
Sbjct: 93  FKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLF 152

Query: 171 LEGTIN-AEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGS 229
           L          S      ++  VW K+   P  +A +  +  + V  +    MP ++  S
Sbjct: 153 LVSEDGAGGEGSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLVGFK----MPGLILKS 208

Query: 230 ILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHG 289
           I I+S A T  A+FS+G  +A   + I  G    I  ++++F+  PA MA  +  +GL G
Sbjct: 209 ISILSGATTPMALFSLG--LALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRG 266

Query: 290 DVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
             L VAI+QAALP    + + A EY +  ++ STAV    ++SL  +  +  +L
Sbjct: 267 LELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320

[Transport and binding proteins, Other]. Length = 321

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 76.9 bits (190), Expect = 6e-16
 Identities = 67/340 (19%), Positives = 146/340 (42%), Gaps = 43/340 (12%)

Query: 10  VVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLP--LFTVEFTAHVDPFKW 67
           V   ++P+++ ++LGY   ++  I   E    ++RLV Y  LP  LF    TA +     
Sbjct: 5   VFEVVLPIFLIILLGYLLKRFG-ILDEEAARGLSRLVVYVALPALLFNSIATADLS-GLA 62

Query: 68  NYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSL----VVGVPLAKA 123
           +   I A  ++ L+   +LAL  +   K           +  L S+      +G+P+A +
Sbjct: 63  DLGLIVASLVATLLAFFLLALIGRFLFK----LDKRETVIFALASAFPNIGFLGLPVALS 118

Query: 124 MYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEASSRP 183
           ++G+  +   V F +I   +   + +++L     GT                        
Sbjct: 119 LFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTN----------------------- 155

Query: 184 DFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMF 243
                +  V  K+  NP   A I G+            +P+ ++ ++ +++ A +  A+ 
Sbjct: 156 ---KSLLSVLKKLLTNPLIIALILGLLLNL----LGISLPAPLDTAVDLLASAASPLALI 208

Query: 244 SMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQ 303
           ++G+ +A   KL      + +  + LK +  P    + A  +GL G  L+V ++ +A+P 
Sbjct: 209 ALGLSLA-FLKLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPT 267

Query: 304 SITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL 343
           ++ +++ A++YG    + ++ ++   ++SL  +     +L
Sbjct: 268 AVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307

Length = 311

>gnl|CDD|104216 PRK09903, PRK09903, putative transporter YfdV; Provisional

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 72/336 (21%), Positives = 146/336 (43%), Gaps = 49/336 (14%)

Query: 14  MVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKWNYRCIA 73
           ++P+ V ++LGY S +    F+ +Q  A N+LV  + LP         V   + N   I 
Sbjct: 9   LLPIIVIMLLGYFSGRR-ETFSEDQARAFNKLVLNYALPA-----ALFVSITRANREMIF 62

Query: 74  ADALSKLIIAIVLALWAKCSSKGSYCW---SITSFSLCTLTSSL----VVGVPLAKAMYG 126
           AD    L+  +V+      S  G Y +   +    ++C L +       +G  +   +YG
Sbjct: 63  ADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYG 122

Query: 127 -QMAVDLVVQF-SVIQAIVWLPVLLLVLEIRRAGTTDAGAVHVDKDLEGTINAEASSRPD 184
             ++  LVV   S+I   + +P+ L +L         +GA       +G  N+  S+   
Sbjct: 123 DSVSTGLVVAIISIIVNAITIPIGLYLL------NPSSGA-------DGKKNSNLSA--- 166

Query: 185 FWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFS 244
                    +  A  P  +A +       V      ++P+  + +  ++++A +G A+F+
Sbjct: 167 --------LISAAKEPVVWAPVLATILVLVG----VKIPAAWDPTFNLIAKANSGVAVFA 214

Query: 245 MGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQS 304
            G+ +A+ +   +   +   F   LK I  P A+ +  +A  L+ + L++ ++  ALP +
Sbjct: 215 AGLTLAAHKFEFSAEIAYNTF---LKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPA 271

Query: 305 ITSFIFAKEYGLHADVLSTAV---IFGMIVSLPLMI 337
            +  I A  + ++    + ++   + G +V+ PL I
Sbjct: 272 FSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWI 307

Length = 314

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	100.0
PRK09903	314	putative transporter YfdV; Provisional	100.0
COG0679	311	Predicted permeases [General function prediction o	100.0
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	100.0
KOG2722	408	consensus Predicted membrane protein [Function unk	99.97
TIGR00841	286	bass bile acid transporter. Functionally character	99.18
COG0385	319	Predicted Na+-dependent transporter [General funct	98.74
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	98.7
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	98.65
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	98.17
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	97.69
PF05982	327	DUF897: Domain of unknown function (DUF897) ; Inte	97.16
TIGR00841	286	bass bile acid transporter. Functionally character	97.02
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	97.01
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	96.52
PRK04288	232	antiholin-like protein LrgB; Provisional	96.38
PRK10711	231	hypothetical protein; Provisional	96.34
COG3329	372	Predicted permease [General function prediction on	96.25
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	96.19
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	96.05
COG0385	319	Predicted Na+-dependent transporter [General funct	95.66
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	95.12
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	93.93
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	93.36
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	92.33
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	91.85
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	90.67
PRK03562	621	glutathione-regulated potassium-efflux system prot	89.63
COG2855	334	Predicted membrane protein [Function unknown]	89.57
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	89.21
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	88.63
PRK10669	558	putative cation:proton antiport protein; Provision	88.33
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	88.22
PRK03659	601	glutathione-regulated potassium-efflux system prot	87.57
TIGR00698	335	conserved hypothetical integral membrane protein.	87.4
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	86.64
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	84.77
KOG2532	466	consensus Permease of the major facilitator superf	82.61
PRK03659	601	glutathione-regulated potassium-efflux system prot	82.43
COG3493	438	CitS Na+/citrate symporter [Energy production and	80.52

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=100.00  E-value=6.1e-49  Score=370.02  Aligned_cols=311  Identities=25%  Similarity=0.351  Sum_probs=260.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCC--Cc-chhhHHHHHHHHHHHH
Q 019021            7 VYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPF--KW-NYRCIAADALSKLIIA   83 (347)
Q Consensus         7 ~~~~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~--~~-~~~~~~~~~~~~~~~~   83 (347)
                      ++.++++++|+++++++||+++||+|++|||+.+.++++++|+++||++|+++.+.+.+  +. .+........+....+
T Consensus         3 ~~~~~~~ilpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (321)
T TIGR00946         3 TYVILETVLPILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSY   82 (321)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677999999999999999854589999999999999999999999999999987664  22 2333333334555567


Q ss_pred             HHHHHHHH-HhCCCchhhHHhHhhhhccccccchhHHHHHHhhcccc---chhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 019021           84 IVLALWAK-CSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMA---VDLVVQFSVIQAIVWLPVLLLVLEIRRAGT  159 (347)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~  159 (347)
                      ++++..+| +.|+|++++....+ ++.++|++|+|+|+++++||+++   +.++..+++.+++..++++..+.+..++++
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (321)
T TIGR00946        83 ALIWLITKPLFKADYGKLSGFLL-VSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAGG  161 (321)
T ss_pred             HHHHHHHHHHHhcccchhhHHHH-HhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhccccccc
Confidence            78888888 55666666554444 47899999999999999999999   677778888888888998877653221100


Q ss_pred             cCCCCccCCcccccccccccCCC-ChhHHHHHHHHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHH
Q 019021          160 TDAGAVHVDKDLEGTINAEASSR-PDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGT  238 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~  238 (347)
                                          +++ .+.++..++.++|.++||+++|+++|++++.+    |+++|+++.++++.+|++++
T Consensus       162 --------------------~~~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~  217 (321)
T TIGR00946       162 --------------------EGSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATT  217 (321)
T ss_pred             --------------------cccchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHH
Confidence                                011 12223356778999999999999999999999    99999999999999999999


Q ss_pred             HHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCch
Q 019021          239 GTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHA  318 (347)
Q Consensus       239 plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~  318 (347)
                      |++|+++|++++..+  .+++++..+..++.|+++.|++++++...++++++..+++++++++|+|.+++++|++||.|+
T Consensus       218 plaLl~lG~~l~~~~--~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~  295 (321)
T TIGR00946       218 PMALFSLGLALSPRK--IKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDV  295 (321)
T ss_pred             HHHHHHHHHhhChhh--hccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCH
Confidence            999999999998754  345778999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021          319 DVLSTAVIFGMIVSLPLMIAYFAILE  344 (347)
Q Consensus       319 ~~aa~~i~~stlls~~t~~i~~~il~  344 (347)
                      |++++.+++||++|++|+|+|+++++
T Consensus       296 ~~aa~~v~~sT~ls~~tlp~~~~l~~  321 (321)
T TIGR00946       296 ELASTAVTLSTVLSLISLPLFIILLG  321 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998763

>PRK09903 putative transporter YfdV; Provisional

Probab=100.00  E-value=1e-47  Score=360.28  Aligned_cols=303  Identities=15%  Similarity=0.250  Sum_probs=251.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCc--chhhHHHHHHHHHHHHHHH
Q 019021            9 KVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKW--NYRCIAADALSKLIIAIVL   86 (347)
Q Consensus         9 ~~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   86 (347)
                      ..++.++|+++++++||++ ||+|+++||+.+.+|++++|+++||++|.++.+.+.++.  ++.......++.+..++++
T Consensus         4 ~~~~~ilpif~ii~lG~~~-~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (314)
T PRK09903          4 FFIGDLLPIIVIMLLGYFS-GRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFS   82 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            5688999999999999999 568999999999999999999999999999998765432  4445555556666666777


Q ss_pred             HHHHH-HhCCCchhhHHhHhhhhccccccchhHHHHHHhhccc---cchhHHHHHHHHHHHHHHHHHHHHhhhhccccCC
Q 019021           87 ALWAK-CSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQM---AVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDA  162 (347)
Q Consensus        87 ~~~~~-~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~  162 (347)
                      +...| ..|+|+.++....+. ++++|+||+|+|+++++||++   ++.++..+ ..+++..++++.+..+..+.+    
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~-~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~-~~~~~~~~~~g~~~~~~~~~~----  156 (314)
T PRK09903         83 WFGCYKFFKRTHAEAAVCALI-AGSPTIGFLGFAVLDPIYGDSVSTGLVVAIIS-IIVNAITIPIGLYLLNPSSGA----  156 (314)
T ss_pred             HHHHHHHhcCCcchhhHhhhh-hcCCCcccccHHHHHHHcCchhhhhhHHHHHH-HHHHHHHHHHHHHHHcccccc----
Confidence            77765 445555454434443 678999999999999999999   45444444 457788899998877543211    


Q ss_pred             CCccCCcccccccccccCCCChhHHHHHHHHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHH
Q 019021          163 GAVHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAM  242 (347)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL  242 (347)
                                      .+++.+    .++.+|+.+|||+++|+++|++++..    |+++|+++.++++++|++++|++|
T Consensus       157 ----------------~~~~~~----~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL  212 (314)
T PRK09903        157 ----------------DGKKNS----NLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAV  212 (314)
T ss_pred             ----------------ccccch----HHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHH
Confidence                            001111    24567788999999999999999999    999999999999999999999999


Q ss_pred             HHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHH
Q 019021          243 FSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLS  322 (347)
Q Consensus       243 ~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa  322 (347)
                      +++|++++..+ . + .+++.+...+.|+++.|++++.++..+++|++..+++++++++|+|.+++++|++||.|++.++
T Consensus       213 ~~iG~~L~~~~-~-~-~~~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa  289 (314)
T PRK09903        213 FAAGLTLAAHK-F-E-FSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGT  289 (314)
T ss_pred             HHHHHHHhhcc-c-c-ccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHH
Confidence            99999998864 2 2 3356778889999999999998888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 019021          323 TAVIFGMIVSLPLMIAYFAILEF  345 (347)
Q Consensus       323 ~~i~~stlls~~t~~i~~~il~~  345 (347)
                      +.+..||++|++|+|+|+++++.
T Consensus       290 ~~v~~sTlls~iTlpl~~~l~~~  312 (314)
T PRK09903        290 ASLAVSVLGFVVTAPLWIYVSRL  312 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998875

>COG0679 Predicted permeases [General function prediction only]

Probab=100.00  E-value=1.1e-45  Score=345.36  Aligned_cols=305  Identities=20%  Similarity=0.377  Sum_probs=266.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCc-chhhHHHHHHHHHHHHHH
Q 019021            7 VYKVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKW-NYRCIAADALSKLIIAIV   85 (347)
Q Consensus         7 ~~~~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   85 (347)
                      +..++..++|+++++++||+++ |.+.++++..+.+|++++|+++||++|+++.+.+.+.. ++..+...+.+.++.++.
T Consensus         2 ~~~~~~~vlpi~lii~lGy~~~-r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (311)
T COG0679           2 MMIVFEVVLPIFLIILLGYLLK-RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL   80 (311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999994 58999999999999999999999999999999988765 566666666777777777


Q ss_pred             HHHHHHHhCCCchh-hHHhHhhhhccccccchhHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 019021           86 LALWAKCSSKGSYC-WSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGA  164 (347)
Q Consensus        86 ~~~~~~~~~~~~~~-~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~  164 (347)
                      .+.+.|+.++++++ +....+ +++++|++++|+|++...||++++.++++|+..+++..++.+.+.++..+++      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~------  153 (311)
T COG0679          81 LALIGRFLFKLDKRETVIFAL-ASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG------  153 (311)
T ss_pred             HHHHHHHHhccchhhHHHHHH-HHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence            77777776544444 333344 5789999999999999999999999999999999999999999988765431      


Q ss_pred             ccCCcccccccccccCCCChhHHHHHHHHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHH
Q 019021          165 VHVDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFS  244 (347)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~  244 (347)
                                      ++    +..++..|+.++||+++|.++|++++..    |+++|++++++++++|++++|++|++
T Consensus       154 ----------------~~----~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~  209 (311)
T COG0679         154 ----------------TN----KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIA  209 (311)
T ss_pred             ----------------ch----hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHH
Confidence                            11    2267788999999999999999999999    99999999999999999999999999


Q ss_pred             hchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHH
Q 019021          245 MGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTA  324 (347)
Q Consensus       245 lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~  324 (347)
                      +|++|+..+ .++.+.+........|+++.|++++...+.++++++...++++++++|+|.+++++|++||.|++.+++.
T Consensus       210 lG~~L~~~~-~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~  288 (311)
T COG0679         210 LGLSLAFLK-LKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAAST  288 (311)
T ss_pred             Hhhhcchhh-hccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHH
Confidence            999999853 3344556666667779999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 019021          325 VIFGMIVSLPLMIAYFAILE  344 (347)
Q Consensus       325 i~~stlls~~t~~i~~~il~  344 (347)
                      +.+||++|++++|.|.+.+.
T Consensus       289 i~ist~ls~~t~p~~~~~l~  308 (311)
T COG0679         289 ILLSTLLSLLTLPLLILLLL  308 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988764

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=100.00  E-value=6e-44  Score=344.35  Aligned_cols=329  Identities=22%  Similarity=0.339  Sum_probs=259.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCC-CC-cchhhHHHH-HHHHHHHHHHH
Q 019021           10 VVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDP-FK-WNYRCIAAD-ALSKLIIAIVL   86 (347)
Q Consensus        10 ~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~-~~-~~~~~~~~~-~~~~~~~~~~~   86 (347)
                      +++.++|+++++++||+++| +|++++++.+.++++++|+++||++|.++++.+. ++ .+++.+... .+...+.++++
T Consensus         2 v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (385)
T PF03547_consen    2 VFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG   80 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999955 7999999999999999999999999999998653 33 344444333 45556666778


Q ss_pred             HHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhhhccccC---CC
Q 019021           87 ALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTD---AG  163 (347)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~---~~  163 (347)
                      +.+.|++|.++.++..... +++++|++++|+|+++++||+++..++.+++..++++.|+++..+.+..+++++.   .+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~  159 (385)
T PF03547_consen   81 FLLSRLFRLPKEWRGVFVL-AASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEEP  159 (385)
T ss_pred             HHHHHhcCCCcccceEEEe-cccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccccc
Confidence            8888877666555443333 5789999999999999999999999999999999999999999988765433111   00


Q ss_pred             C-----ccCCcc---------------ccccccc-------------------ccCCC----------ChhHHHHHHHHH
Q 019021          164 A-----VHVDKD---------------LEGTINA-------------------EASSR----------PDFWHLMKLVWL  194 (347)
Q Consensus       164 ~-----~~~~~~---------------~~~~~~~-------------------~~~~~----------~~~~~~~~~~~~  194 (347)
                      +     +++++|               ++.++++                   +++++          ...++..++.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (385)
T PF03547_consen  160 SSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKSIL  239 (385)
T ss_pred             cccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHHHH
Confidence            0     000000               0000000                   00000          012344566778


Q ss_pred             HHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHH
Q 019021          195 KVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAG  274 (347)
Q Consensus       195 ~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~  274 (347)
                      +.++||+++|.++|+++++.+......+|+++.+.++++|++++|++|+++|++++..+.....+++.....++.|+++.
T Consensus       240 ~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~  319 (385)
T PF03547_consen  240 KLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIIL  319 (385)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHH
Confidence            89999999999999999999332233344999999999999999999999999998765333456777777899999999


Q ss_pred             HHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 019021          275 PAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYF  340 (347)
Q Consensus       275 P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~  340 (347)
                      |++++++++.++++++...++++++++|+|.+..++|++||.|++.+++.+++||+++++++|+|+
T Consensus       320 P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  320 PLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999999999999999999995

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=99.97  E-value=1.2e-31  Score=243.90  Aligned_cols=343  Identities=15%  Similarity=0.148  Sum_probs=252.1

Q ss_pred             cchhhHHHHHH---HHHHHHHHHHHhhhhhh-hccccChHHhHHHHHHHHHHHhHHHHHHHhccC-CCCCc-chhhHHHH
Q 019021            2 IGWEDVYKVVV---AMVPLYVALMLGYGSVK-WWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHV-DPFKW-NYRCIAAD   75 (347)
Q Consensus         2 ~~~~~~~~~~~---~i~pi~~ii~iG~~~~k-~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~-~~~~~-~~~~~~~~   75 (347)
                      -++-++.++.+   .++.++++..+||++++ +-++++++..|.+|+++++++.||++|..+++. ++++. +||++...
T Consensus         2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn   81 (408)
T KOG2722|consen    2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN   81 (408)
T ss_pred             chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence            33444444444   66778999999999985 239999999999999999999999999999975 56664 78888777


Q ss_pred             H-HHHHHHHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhh-------cc------ccchhHHHHHHHHH
Q 019021           76 A-LSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMY-------GQ------MAVDLVVQFSVIQA  141 (347)
Q Consensus        76 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~-------G~------~~~~~~~~~~i~~~  141 (347)
                      . +.+.++.+++|+..|+.|.+++.+. ....+|+++|.|++.+-++.++.       |+      .|+.|+..+.....
T Consensus        82 v~Lt~~ig~liG~lv~~I~rppp~~~~-fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~  160 (408)
T KOG2722|consen   82 VGLTFIIGSLIGWLVVKILRPPPQLRG-FIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQ  160 (408)
T ss_pred             HHHHHHHHHHHHHHHhheecCChhhcC-eEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhh
Confidence            5 6777888999999999887766554 33346899999999999999995       43      25677777777777


Q ss_pred             HHHHHHHHHHHhhhh-ccccCCCC--------------ccCCccc----------cccc-ccc-cCCC--ChhHHHHHHH
Q 019021          142 IVWLPVLLLVLEIRR-AGTTDAGA--------------VHVDKDL----------EGTI-NAE-ASSR--PDFWHLMKLV  192 (347)
Q Consensus       142 ~~~~~~~~~l~~~~~-~~~~~~~~--------------~~~~~~~----------~~~~-~~~-~~~~--~~~~~~~~~~  192 (347)
                      +..|++++.++.... +.+.+.++              .+.+.|+          |+++ +.. ..++  .+.+....+.
T Consensus       161 il~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~~  240 (408)
T KOG2722|consen  161 ILRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEKV  240 (408)
T ss_pred             hEEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHHh
Confidence            777888876543321 11111111              0111110          0100 000 0011  0111112223


Q ss_pred             HHHHhcCchhHHHHHHHHHHhhccc----cCCCCC-hhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHH
Q 019021          193 WLKVAMNPNAYACIFGIAWAFVSNR----WHFEMP-SIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGM  267 (347)
Q Consensus       193 ~~~~~~nP~iia~~~gl~~~~~~~~----~~~~lP-~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~  267 (347)
                      ..+.+.+||++|.++|+++...++.    .|-.=| ..+.+..+.+|+.++|+.++++|..|....+....+.+.++..+
T Consensus       241 ~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigii  320 (408)
T KOG2722|consen  241 ILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGII  320 (408)
T ss_pred             hHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEEEE
Confidence            3345679999999999999998752    122222 58999999999999999999999999887654444556666678


Q ss_pred             HHHHHHHHHHHHHHHHH---c---C-CChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 019021          268 VLKFIAGPAAMAIGAIA---M---G-LHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYF  340 (347)
Q Consensus       268 ~~rlii~P~i~~~~~~~---~---~-~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~  340 (347)
                      ..|+++.|.+.+++...   +   . -||..+.++.++.++|||++...+|+.+|..+++.|..++|++.++.+.+.+|.
T Consensus       321 i~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~  400 (408)
T KOG2722|consen  321 IGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWS  400 (408)
T ss_pred             EeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            89999999999987642   2   3 578899999999999999999999999999999999999999999999999998


Q ss_pred             HHHhh
Q 019021          341 AILEF  345 (347)
Q Consensus       341 ~il~~  345 (347)
                      .++-.
T Consensus       401 ~~f~~  405 (408)
T KOG2722|consen  401 VFFLW  405 (408)
T ss_pred             HHHHH
Confidence            77643

>TIGR00841 bass bile acid transporter

Probab=99.18  E-value=3.4e-10  Score=104.82  Aligned_cols=110  Identities=15%  Similarity=0.079  Sum_probs=97.0

Q ss_pred             HhHHHHHHHHhchhhhhchhh-hhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHH
Q 019021          235 RAGTGTAMFSMGIFMASQEKL-IACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKE  313 (347)
Q Consensus       235 ~~~~plaL~~lG~~l~~~~~~-~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~  313 (347)
                      -....++|+.+|++++..+.. ..++.+......+.|++++|++++++...++.+++....+++.+++|++.++.++++.
T Consensus        11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~   90 (286)
T TIGR00841        11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYL   90 (286)
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHH
Confidence            344788999999999876521 1234457788889999999999999999899999999999999999999999999999


Q ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021          314 YGLHADVLSTAVIFGMIVSLPLMIAYFAILE  344 (347)
Q Consensus       314 ~~~d~~~aa~~i~~stlls~~t~~i~~~il~  344 (347)
                      +|.|.+.+++.+.+||++|++++|+|..++.
T Consensus        91 ~~gn~~la~~~~~~stlls~vt~Pl~l~~~~  121 (286)
T TIGR00841        91 LKGDMALSISMTTCSTLLALGMMPLLLYIYA  121 (286)
T ss_pred             hCCCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988764

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=98.74  E-value=4e-07  Score=84.07  Aligned_cols=109  Identities=13%  Similarity=0.127  Sum_probs=95.6

Q ss_pred             HhHHHHHHHHhchhhhhchh-hhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHH
Q 019021          235 RAGTGTAMFSMGIFMASQEK-LIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKE  313 (347)
Q Consensus       235 ~~~~plaL~~lG~~l~~~~~-~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~  313 (347)
                      .....+.+|..|..++.... ...+.||..+...+.-++++|+++++++..+++|++...-+++.+++|.++.+.+++..
T Consensus        41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~l  120 (319)
T COG0385          41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYL  120 (319)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHH
Confidence            45556667777777765431 23357889999999999999999999999999999999999999999999999999999


Q ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          314 YGLHADVLSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       314 ~~~d~~~aa~~i~~stlls~~t~~i~~~il  343 (347)
                      ++.|...+-...+.||+++.++.|++..++
T Consensus       121 AkGnValsV~~tsvStll~~f~tPllv~l~  150 (319)
T COG0385         121 AKGNVALSVCSTSVSTLLGPFLTPLLVGLL  150 (319)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998775

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=98.70  E-value=3.6e-07  Score=79.35  Aligned_cols=107  Identities=19%  Similarity=0.202  Sum_probs=85.7

Q ss_pred             HHHHHHHhchhhhhchhh-hhchhHHHHHHHHHHHHHHHHHHHHHH-HHcCCChhHHHHHhHHhccChhhHHHHHHHHhC
Q 019021          238 TGTAMFSMGIFMASQEKL-IACGTSLTIFGMVLKFIAGPAAMAIGA-IAMGLHGDVLRVAIIQAALPQSITSFIFAKEYG  315 (347)
Q Consensus       238 ~plaL~~lG~~l~~~~~~-~~~~~~~~~~~~~~rlii~P~i~~~~~-~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~  315 (347)
                      ..+.|+.+|.+++..+-. ..++.|......+.+++++|++++++. ..++.+++....+++++++|.+..+..++...|
T Consensus         4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~~   83 (187)
T PF01758_consen    4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLAG   83 (187)
T ss_dssp             HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHTT
T ss_pred             hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHhC
Confidence            456788888888766521 123456777788999999999999998 788999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021          316 LHADVLSTAVIFGMIVSLPLMIAYFAILE  344 (347)
Q Consensus       316 ~d~~~aa~~i~~stlls~~t~~i~~~il~  344 (347)
                      .|.+.+.+...++|+++.+++|++..++.
T Consensus        84 Gd~~ls~~lt~istll~~~~~P~~~~l~~  112 (187)
T PF01758_consen   84 GDVALSVSLTLISTLLAPFLMPLLLYLLS  112 (187)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccceeeHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999988763

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>TIGR00832 acr3 arsenical-resistance protein

Probab=98.65  E-value=1.5e-06  Score=81.98  Aligned_cols=140  Identities=11%  Similarity=0.039  Sum_probs=105.6

Q ss_pred             hcCchhHHHHHHHHHHhhccccCCCCChhHHHHHH-HHHHhHHH------HHHHHhchhhhhchh-hhhchhHHHHHHHH
Q 019021          197 AMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSIL-IMSRAGTG------TAMFSMGIFMASQEK-LIACGTSLTIFGMV  268 (347)
Q Consensus       197 ~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~-~l~~~~~p------laL~~lG~~l~~~~~-~~~~~~~~~~~~~~  268 (347)
                      +....+.++++|++....       .|+.....-. ...+...|      ..|+.+|..++..+. ...+++|.......
T Consensus         8 ~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~   80 (328)
T TIGR00832         8 LTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLF   80 (328)
T ss_pred             HHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHH
Confidence            445566777778887554       3433221111 11222333      456777777755441 22356788999999


Q ss_pred             HHHHHHHHHHHHHHHH-cCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          269 LKFIAGPAAMAIGAIA-MGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       269 ~rlii~P~i~~~~~~~-~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il  343 (347)
                      ..++++|++++++... ++.+++...-+++.+++|.+..+.+++...|.|...+.+...++|+++.+++|.+.+.+
T Consensus        81 ~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll  156 (328)
T TIGR00832        81 INWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLL  156 (328)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999886 48999999899999999999999999999999999999999999999999999987765

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=98.17  E-value=4.4e-05  Score=71.62  Aligned_cols=140  Identities=16%  Similarity=0.209  Sum_probs=108.9

Q ss_pred             CchhHHHHHHHHHHhhccccCCCCChhHHHHH--HHHHHhHHHHHHHHhchhhhhchh-hhhchhHHHHHHHHHHHHHHH
Q 019021          199 NPNAYACIFGIAWAFVSNRWHFEMPSIMEGSI--LIMSRAGTGTAMFSMGIFMASQEK-LIACGTSLTIFGMVLKFIAGP  275 (347)
Q Consensus       199 nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l--~~l~~~~~plaL~~lG~~l~~~~~-~~~~~~~~~~~~~~~rlii~P  275 (347)
                      |+.+++.+.++++...     .+-|..-...+  +...+..+.+..+.-|.+++..+- ...++||........-+++.|
T Consensus         1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P   75 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP   75 (313)
T ss_pred             CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            4567788888888765     22222222222  245555688889999999976652 223578888888999999999


Q ss_pred             HHHHHHHHHcC--CChhHHHHHhHHhccChhhH-HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          276 AAMAIGAIAMG--LHGDVLRVAIIQAALPQSIT-SFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       276 ~i~~~~~~~~~--~~~~~~~~~vl~~a~P~a~~-~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il  343 (347)
                      ++++++....+  .+++...-+.+.+++|+.+. +..+++..|.|...+-.....|+++++++.|+|...+
T Consensus        76 ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~  146 (313)
T PF13593_consen   76 LLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLL  146 (313)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence            99999988763  57788888999999999966 5679999999999999999999999999999998765

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=97.69  E-value=0.001  Score=61.71  Aligned_cols=143  Identities=13%  Similarity=0.058  Sum_probs=103.9

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHH--HHHHhHHHHHHHH--------hchhhhhchhhhhchhH
Q 019021          192 VWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSIL--IMSRAGTGTAMFS--------MGIFMASQEKLIACGTS  261 (347)
Q Consensus       192 ~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~--~l~~~~~plaL~~--------lG~~l~~~~~~~~~~~~  261 (347)
                      .+.|-+.-=+++|+++|+.+       |...|+ +.+.++  ..++...|.+.-.        +....+..++ ..++.|
T Consensus        11 ~~dk~l~~wv~l~i~~Gi~l-------G~~~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~-v~k~~k   81 (342)
T COG0798          11 FLDKYLTLWVFLAIAIGILL-------GVHFPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKN-VFKDPK   81 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------Hhcccc-hhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHH-HHhcch
Confidence            33343333378899999998       445555 233333  2333333333221        2333333332 234678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 019021          262 LTIFGMVLKFIAGPAAMAIGAIA-MGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYF  340 (347)
Q Consensus       262 ~~~~~~~~rlii~P~i~~~~~~~-~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~  340 (347)
                      ......+...++.|+.++.+++. ++..++.+.-+++....|+-....+.++..+.|.|.++..+.++.++.++..+.+.
T Consensus        82 ~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~  161 (342)
T COG0798          82 PLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLG  161 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999998765 46677888889999999999999999999999999999999999999999998886


Q ss_pred             HHH
Q 019021          341 AIL  343 (347)
Q Consensus       341 ~il  343 (347)
                      +++
T Consensus       162 ~~~  164 (342)
T COG0798         162 KFF  164 (342)
T ss_pred             HHH
Confidence            664

>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function

Probab=97.16  E-value=0.21  Score=46.51  Aligned_cols=251  Identities=15%  Similarity=0.088  Sum_probs=124.8

Q ss_pred             HHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHh---ccCCCCCcchhhHHHH-HHHHHHHHHHHHHHHH
Q 019021           16 PLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFT---AHVDPFKWNYRCIAAD-ALSKLIIAIVLALWAK   91 (347)
Q Consensus        16 pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   91 (347)
                      |..+...+|.+.+. .| -|-+.-+.+.|++--..+=+.=++.-   .+.+.++ .+...... .++.++- +.+|.+-|
T Consensus         1 P~vLFF~LG~~A~~-~k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~-~~~~~~~~~~lg~liP-l~~~~iLr   76 (327)
T PF05982_consen    1 PVVLFFILGIIAAL-LK-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTA-LLLPLLAAVLLGILIP-LIAFPILR   76 (327)
T ss_pred             CchHHHHHHHHHHH-Hc-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHH-HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            34456667777642 22 12234455666555555555555532   2222222 12222222 2333333 44454444


Q ss_pred             H-hCCCchhhHHhHhhhhccccccchhHHHHHHhhccccch---hHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCccC
Q 019021           92 C-SSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVD---LVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVHV  167 (347)
Q Consensus        92 ~-~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  167 (347)
                      . .|-|+.+.  ... +.-|+.....-+-...+...++++.   |...+........--++..+.+....+++ .+++.+
T Consensus        77 ~~~~l~~~da--aAi-AAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~-~~~~~~  152 (327)
T PF05982_consen   77 RLGKLDRADA--AAI-AAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQA-AGATAS  152 (327)
T ss_pred             HccCCChhhH--HHH-HHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhcccc-ccccCC
Confidence            4 45566554  233 2557777777777777777666554   44444444445545556665543222100 000000


Q ss_pred             CcccccccccccCCCChhHHHHHHHHHHHhcCchhHHHHHHHHHHhhccccCC-CCChhHHHHHHHHHHhHHHHHHHHhc
Q 019021          168 DKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHF-EMPSIMEGSILIMSRAGTGTAMFSMG  246 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~-~lP~~i~~~l~~l~~~~~plaL~~lG  246 (347)
                      +++.+..   ..+++.+    +++.+++.++|+-++..+-|+++.+.-...+. ++-++..+.++    ....+-|+-+|
T Consensus       153 ~~~~~~~---~~~~~~~----~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~----G~L~lFLLeMG  221 (327)
T PF05982_consen  153 STRVGAG---SGHEGIS----WGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFK----GVLCLFLLEMG  221 (327)
T ss_pred             ccccccc---ccccccc----HHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHH----HHHHHHHHHhh
Confidence            0000000   0112333    67888999999999999999999887332222 23344444444    55556666666


Q ss_pred             hhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHH----HHHcCCCh
Q 019021          247 IFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIG----AIAMGLHG  289 (347)
Q Consensus       247 ~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~----~~~~~~~~  289 (347)
                      +.=+++  .  +++|+.-+....==+++|++...+    .+..|++.
T Consensus       222 l~A~~r--L--~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~  264 (327)
T PF05982_consen  222 LVAARR--L--RDLRKVGWFLIAFGILMPLINALIGIGLGWLLGLSP  264 (327)
T ss_pred             HHHHHh--h--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            654432  2  244444443333345777776544    35567764

>TIGR00841 bass bile acid transporter

Probab=97.02  E-value=0.0074  Score=55.98  Aligned_cols=130  Identities=12%  Similarity=0.031  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccccChHHhHH------HHHHHHHHHhHHHHHHHhccC--CCCCcchhhHHHHHHHHH
Q 019021            9 KVVVAMVPLYVALMLGYGSVKWWRIFTLEQCDA------INRLVCYFTLPLFTVEFTAHV--DPFKWNYRCIAADALSKL   80 (347)
Q Consensus         9 ~~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~------ls~lv~~i~lP~lif~~~~~~--~~~~~~~~~~~~~~~~~~   80 (347)
                      +++....-+++=+.+|..+ ||+.   ++..+.      ++.+.+.+.    ++..+...  ++.+..+.......+...
T Consensus       135 ~i~~~~~~v~vPl~lG~~~-r~~~---p~~~~~~~~~~~~s~~~l~li----v~~~~~~~~~~i~~~~~~~~~~~~ll~~  206 (286)
T TIGR00841       135 GIGLSLVAVLIPVSIGMLV-KHKL---PQIAKIILKVGLISVFLLSVI----IAVVGGINVENLATIGPLLLLVGILLPL  206 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHh---HHHHHHHHhCchHHHHHHHHH----HHHHHHhhHHHHHHhhHHHHHHHHHHHH
Confidence            3333355667777889988 5321   222222      333322222    22222221  121223444444455567


Q ss_pred             HHHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Q 019021           81 IIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVL  148 (347)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~i~~~~~~~~~~  148 (347)
                      +.+.++|.++|.+|.|+.++....+. ++..|++ +|+++....|+++....+..|.+.+++....++
T Consensus       207 ~~~~~g~~~a~~~~l~~~~~~t~~~~-~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a  272 (286)
T TIGR00841       207 AGFLLGYLLAKLAGLPWARCRTISIE-VGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFA  272 (286)
T ss_pred             HHHHHHHHHHHHhCCCHhhheeeeee-eecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999887665444334453 6779998 999999999987665566666666655544443

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=97.01  E-value=0.36  Score=46.53  Aligned_cols=308  Identities=15%  Similarity=0.081  Sum_probs=144.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCc---chhhHHHHHH---HHHHHH
Q 019021           10 VVVAMVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKW---NYRCIAADAL---SKLIIA   83 (347)
Q Consensus        10 ~~~~i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~---~~~~~~~~~~---~~~~~~   83 (347)
                      .+..+-|..+++++|.++.- .|+++....+...+.+....+|..++--+.+.|+++.   ..+.+...++   +..+..
T Consensus        21 ~f~~l~~~vl~~~~~~~lsn-lgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~   99 (378)
T PF05684_consen   21 FFKYLPGAVLCYLLGMLLSN-LGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGA   99 (378)
T ss_pred             hHhhcCHHHHHHHHHHHHHH-CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            34555578889999999864 8988555567899999999999999999989887642   2334333333   333344


Q ss_pred             HHHHHHHHHhCCCchhhHHh-HhhhhccccccchhHHHHHHhhcccc--chhHHHHHHHHHHHHHHHHHHHHhhhhc---
Q 019021           84 IVLALWAKCSSKGSYCWSIT-SFSLCTLTSSLVVGVPLAKAMYGQMA--VDLVVQFSVIQAIVWLPVLLLVLEIRRA---  157 (347)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~N~~~~g~Pi~~~l~G~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~~---  157 (347)
                      .+++...+.. ..++.+.+. .+.++.-+=+.|+ ..+.++ +|.+.  .......|.....+++.+...+....+.   
T Consensus       100 ~va~~l~~~~-l~~~~wk~ag~l~gsyiGGs~N~-~Av~~a-l~~~~~~~~a~~aaDnv~~~~~~~~l~~l~~~~~~~~~  176 (378)
T PF05684_consen  100 VVAFLLFGGF-LGPEGWKIAGMLAGSYIGGSVNF-VAVAEA-LGVSDSLFAAALAADNVVMALWFAFLLALPPFARKFDR  176 (378)
T ss_pred             HHHHHHHhhc-ccchHHHHHHHHHhcccCchhHH-HHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhh
Confidence            4444444432 122333333 3433322222232 233333 33332  2333333333322223322222221110   


Q ss_pred             cccCCCCccCCccccc-ccccccCCCChhH----------------HHHHHHHHHHh------cCchhHHHHHHHHHHhh
Q 019021          158 GTTDAGAVHVDKDLEG-TINAEASSRPDFW----------------HLMKLVWLKVA------MNPNAYACIFGIAWAFV  214 (347)
Q Consensus       158 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~------~nP~iia~~~gl~~~~~  214 (347)
                      ..++.+++.++.++|. +++.+.++++..+                +...+.+.+..      +-+.+....+|++....
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~~  256 (378)
T PF05684_consen  177 WTKADTSSIEALEEEIEAEEAEWARKPISQDLAFLLAVAFAVVALSHALAAWLPPLFAGISSSTWLILTVTTLGLATSFP  256 (378)
T ss_pred             ccCCCccccchhhhhhhhhhhccccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhcc
Confidence            0011000000000000 0000000111100                00011110000      11223333344443322


Q ss_pred             ccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q 019021          215 SNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRV  294 (347)
Q Consensus       215 ~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~  294 (347)
                          ..  -+.+ +.-+.+|....-+-.-.+|+.-+... ..  +-.......++=+.++=++.+++..++++|-+...+
T Consensus       257 ----~~--~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~-l~--~ap~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~v  326 (378)
T PF05684_consen  257 ----PF--RKLL-RGASELGTFLLYLFFAVIGASADISE-LL--DAPSLFLFGFIILAIHLLLMLILGKLFKIDLFELLV  326 (378)
T ss_pred             ----ch--hhcC-CchHHHHHHHHHHHHHHHccccCHHH-HH--HhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                11  1111 35566777777777777888765443 22  122233334445666667777777888888766644


Q ss_pred             HhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Q 019021          295 AIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLP  334 (347)
Q Consensus       295 ~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~  334 (347)
                      .-.-...=|+ ++..+|..+|  ++++.-.+.+.++--.+
T Consensus       327 AS~AnIGGpa-TA~a~A~a~~--~~Lv~pgvL~gvlGyai  363 (378)
T PF05684_consen  327 ASNANIGGPA-TAPAVAAAKG--PSLVPPGVLMGVLGYAI  363 (378)
T ss_pred             HhhcccCCcc-hHHHHHHhcC--CccHHHHHHHHHHHHHH
Confidence            4433333333 3577888888  66766666666654433

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=96.52  E-value=0.22  Score=44.07  Aligned_cols=141  Identities=13%  Similarity=0.098  Sum_probs=100.7

Q ss_pred             HHHhcCchhHHHHHHH-HHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHH
Q 019021          194 LKVAMNPNAYACIFGI-AWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFI  272 (347)
Q Consensus       194 ~~~~~nP~iia~~~gl-~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rli  272 (347)
                      ++.+.||.+++.++-+ ++...    |++..++ .+.-+.+....-|. -.+++.-+.++.+..+++++.+...+..=-+
T Consensus        16 ~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y-~~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~g~~   89 (215)
T PF04172_consen   16 KSPFLNPLLIAIVLIIAFLLLT----GIPYEDY-MQGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLVGSL   89 (215)
T ss_pred             CCCcccHHHHHHHHHHHHHHHH----CCCHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556799999887744 34444    6665444 34556665555554 7888888888766667788888888888777


Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHhHHh-ccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          273 AGPAAMAIGAIAMGLHGDVLRVAIIQA-ALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       273 i~P~i~~~~~~~~~~~~~~~~~~vl~~-a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il  343 (347)
                      +.-.....+++.+|.|++....+.=-+ .+|.|   .-.+++.|.+++.++..+.+|=++....=|.+.-.+
T Consensus        90 ~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiA---i~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~~  158 (215)
T PF04172_consen   90 VSIFSAVLLARLLGLSPEIILSLAPKSVTTPIA---IEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKLL  158 (215)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHH---HHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhHc
Confidence            887888888889999988776555544 34544   456789999999999999998888776666554443

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=96.38  E-value=0.28  Score=43.68  Aligned_cols=142  Identities=16%  Similarity=0.117  Sum_probs=100.0

Q ss_pred             HHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHH
Q 019021          194 LKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIA  273 (347)
Q Consensus       194 ~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii  273 (347)
                      |+.+.||.+++.++-+.+-..   .|++..++ .+.-+.+.....| +-.+++.-++++.+..++.|+.+...+.+=-++
T Consensus        32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~  106 (232)
T PRK04288         32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC  106 (232)
T ss_pred             CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            345679999887766655443   25555443 4445555544444 456677788777666677888888888888777


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHhHHh-ccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          274 GPAAMAIGAIAMGLHGDVLRVAIIQA-ALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       274 ~P~i~~~~~~~~~~~~~~~~~~vl~~-a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il  343 (347)
                      .-.....++..+|.|++....+.=-+ .+|.   +.-.+++.|.+++.++..+.++=++....-|..+-.+
T Consensus       107 ~i~s~~~la~~lgl~~~~~~Sl~pKSVTtPI---Am~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~  174 (232)
T PRK04288        107 SVLIIYLVAKLIQLDNAVMASMLPQAATTAI---ALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHhhHhhhHHH---HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            77777888889999998766555444 2343   4567899999999999999999888877776665544

>PRK10711 hypothetical protein; Provisional

Probab=96.34  E-value=0.22  Score=44.34  Aligned_cols=142  Identities=12%  Similarity=0.053  Sum_probs=102.5

Q ss_pred             HHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHH
Q 019021          194 LKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIA  273 (347)
Q Consensus       194 ~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii  273 (347)
                      ++.+.||.+++.++-+.+-..   .|++..++ .+.-+.+.....| +-.+++.-++++.+..++.++.+...+.+=-++
T Consensus        27 ~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v  101 (231)
T PRK10711         27 KFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSVV  101 (231)
T ss_pred             CCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            455679999887665555443   25555444 4444555555544 456777888877666777888888888888888


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHhHHh-ccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          274 GPAAMAIGAIAMGLHGDVLRVAIIQA-ALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       274 ~P~i~~~~~~~~~~~~~~~~~~vl~~-a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il  343 (347)
                      .-...+.++..+|.|++....+.=-+ .+|.|   .-.+++.|.+++.++..+.++=++....-|..+-.+
T Consensus       102 ~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIA---m~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~  169 (231)
T PRK10711        102 AMVTGTAVALWMGATPEIAASILPKSVTTPIA---MAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHH---HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88888888899999998876666555 34444   456799999999999999999888877777665554

>COG3329 Predicted permease [General function prediction only]

Probab=96.25  E-value=0.95  Score=41.68  Aligned_cols=230  Identities=15%  Similarity=0.095  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHhhhhhhhccccChHHhHHHHHHHHHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHH
Q 019021           14 MVPLYVALMLGYGSVKWWRIFTLEQCDAINRLVCYFTLPLFTVEFTAHVDPFKW---NYRCIAADALSKLIIAIVLALWA   90 (347)
Q Consensus        14 i~pi~~ii~iG~~~~k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   90 (347)
                      .-|.++....|.+..- .| -+-+.-+.+.+......+-|.=|+.-.+.+.+..   ........++++++.+...+...
T Consensus        16 ~sP~llFf~~Gmlia~-~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~   93 (372)
T COG3329          16 LSPTLLFFILGMLIAA-FK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLR   93 (372)
T ss_pred             ccchHHHHHHHHHHHH-Hh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3377777888888642 22 1223334455544444555555554333332222   12222333455555555555555


Q ss_pred             HHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccccchh---HHHHHHHHHHHHHHHHHHHHhh---hhccccCCC-
Q 019021           91 KCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDL---VVQFSVIQAIVWLPVLLLVLEI---RRAGTTDAG-  163 (347)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~---~~~~~i~~~~~~~~~~~~l~~~---~~~~~~~~~-  163 (347)
                      |+.+-|+.++.  .. +..|+...-.-+.-+.+..-+.+..|   .........+...-.+..+.+.   .+.+..+.+ 
T Consensus        94 kl~~vdtvdaa--A~-ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y~~~~k~s~aa~~  170 (372)
T COG3329          94 KLPKVDTVDAA--AT-AGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIYLNDEKRSAAAEA  170 (372)
T ss_pred             HccccchHHHH--HH-HhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHHHhcccccccccc
Confidence            65566665543  22 24567766666666667766655543   2222222222222223333221   111100100 


Q ss_pred             --------Cc-cCCccccccccc--ccCCCChhHHHHHHHHHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHH
Q 019021          164 --------AV-HVDKDLEGTINA--EASSRPDFWHLMKLVWLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILI  232 (347)
Q Consensus       164 --------~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~  232 (347)
                              .| .+++|-+.+-|+  .++...+.+-..|+.+++.+.||-+...+.|+++.+.   .|-+=-+.+.++.+-
T Consensus       171 ~s~~~vA~~e~g~~~d~~ssr~~~~~~~~~ed~~v~~~ell~Esflnpal~lllggl~iGli---tGe~g~~vl~~F~~~  247 (372)
T COG3329         171 HSKQLVAAGEYGDQTDLASSRQEYLSPQWGEDNRVKIWELLQESFLNPALVLLLGGLAIGLI---TGEQGESVLKPFFDP  247 (372)
T ss_pred             ccccchhhcccCchhhhhhhhhhhcccccCcccchhhHHHHHHHHcCchHHHHHHHHHHhhe---eccCchhhhhhhhHH
Confidence                    01 111221100000  0000000112256788889999999999999999987   233333455666777


Q ss_pred             HHHhHHHHHHHHhchhhhh
Q 019021          233 MSRAGTGTAMFSMGIFMAS  251 (347)
Q Consensus       233 l~~~~~plaL~~lG~~l~~  251 (347)
                      +=+....+-|+.+|+.-..
T Consensus       248 lFqGvL~lflL~MGm~A~r  266 (372)
T COG3329         248 LFQGVLCLFLLDMGMTAGR  266 (372)
T ss_pred             HHHHHHHHHHHHHhHHHHH
Confidence            7778888999999997643

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=96.19  E-value=0.35  Score=43.00  Aligned_cols=142  Identities=11%  Similarity=0.047  Sum_probs=97.7

Q ss_pred             HHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHH
Q 019021          194 LKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIA  273 (347)
Q Consensus       194 ~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii  273 (347)
                      ++.+.||.+++.++-+.+-..   .|++..++ .+.-+.+.....| +..+++.-+.++.+..++.++.+...+..=-++
T Consensus        26 ~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~  100 (226)
T TIGR00659        26 KRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAVGSVI  100 (226)
T ss_pred             CCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            556779999988766655443   25555444 4455555444333 456777778777666677788888777777777


Q ss_pred             HHHHHHHHHHHcCCChhHHHHHhHHh-ccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          274 GPAAMAIGAIAMGLHGDVLRVAIIQA-ALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       274 ~P~i~~~~~~~~~~~~~~~~~~vl~~-a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il  343 (347)
                      .-.....+++.+|.|++....+.=-+ .+|.   +.-.+++.|.+++.++..+.+|=++....-|..+-.+
T Consensus       101 ~~~s~~~la~~lg~~~~i~~Sl~pkSvTtpi---Am~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~  168 (226)
T TIGR00659       101 AIISGTLLALLLGLGPEIIASLLPKSVTTPI---AMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF  168 (226)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHhhhHHhhHHH---HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            77777778888999987765554444 2343   3457889999999999999998888777666555443

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=96.05  E-value=0.41  Score=42.28  Aligned_cols=143  Identities=14%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             HHHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHH
Q 019021          193 WLKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFI  272 (347)
Q Consensus       193 ~~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rli  272 (347)
                      .|+.+.||.+++.++.+.+-..   .|++..+ ..+.-+.+...--| +-.+++.=+.++.+..++.|+.+...+++--+
T Consensus        28 ~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~-Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~  102 (230)
T COG1346          28 TKSPFLNPLLVATVLLIAFLLL---FGISYED-YMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGSV  102 (230)
T ss_pred             cCCcccchHHHHHHHHHHHHHH---cCCCHHH-HhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556789999998887766554   2555433 33344445555555 66777888887766667788888888777777


Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHhHHhc-cChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          273 AGPAAMAIGAIAMGLHGDVLRVAIIQAA-LPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       273 i~P~i~~~~~~~~~~~~~~~~~~vl~~a-~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il  343 (347)
                      +.-.....+...++.|++....+.=-+. +|.   +.-.+++.|.-++.++-.+.++=++.-+.-|...-.+
T Consensus       103 ~ai~s~~llak~~g~~~~~~~Sl~PkSvTTpi---Am~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~  171 (230)
T COG1346         103 VAIISGVLLAKLFGLSPELILSLLPKSVTTPI---AMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL  171 (230)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHhcccccccHH---HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7767777778889999987765544442 333   3456889999999999999988888777766665544

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=95.66  E-value=0.13  Score=47.94  Aligned_cols=128  Identities=13%  Similarity=0.035  Sum_probs=74.4

Q ss_pred             HHHHHHHHhhhhhhhccccChHHhH---HHHHHHHHHHhHHHHHHHhccCCCCC--cchhhHHHHHHHHHHHHHHHHHHH
Q 019021           16 PLYVALMLGYGSVKWWRIFTLEQCD---AINRLVCYFTLPLFTVEFTAHVDPFK--WNYRCIAADALSKLIIAIVLALWA   90 (347)
Q Consensus        16 pi~~ii~iG~~~~k~~~~~~~~~~~---~ls~lv~~i~lP~lif~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   90 (347)
                      .+++=+.+|-++ |+  +++ +..+   ..-..+-...+=+.+...++....+.  .....+....+...+++..+|..+
T Consensus       169 ~vllP~~LG~~~-r~--~~~-~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~a  244 (319)
T COG0385         169 QVLLPFVLGQLL-RP--LLP-KWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGA  244 (319)
T ss_pred             HHHHHHHHHHHH-HH--HHH-HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555677776 32  222 2222   23333444445555555555432221  123333444456677889999999


Q ss_pred             HHhCCCchhhHHhHhhhhccccccchhHHHHHHhhc-cccchhHHHHHHHHHHHHHHHHH
Q 019021           91 KCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYG-QMAVDLVVQFSVIQAIVWLPVLL  149 (347)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G-~~~~~~~~~~~i~~~~~~~~~~~  149 (347)
                      |+.+.|+.++....++ .+..|.+ .|.|+....+| ...+.+..+|...|++..--++-
T Consensus       245 r~~g~~~a~~iti~ie-~g~qn~~-lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~  302 (319)
T COG0385         245 RLLGFDKADEITIAIE-GGMQNLG-LGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAG  302 (319)
T ss_pred             HHhCCChhheeeEEEe-eccccHH-HHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            9998887666534564 5567776 69999999666 34445677777777665443433

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=95.12  E-value=0.56  Score=43.88  Aligned_cols=139  Identities=15%  Similarity=0.089  Sum_probs=80.3

Q ss_pred             hcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHH
Q 019021          197 AMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPA  276 (347)
Q Consensus       197 ~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~  276 (347)
                      -.+++++|.++|++++-.    -...|+...+.++.-++-....+...+|..+.... .....++....... =....=.
T Consensus        25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~-i~~~G~~~~~~~~~-~v~~~~~   98 (305)
T PF03601_consen   25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSD-ILALGWKGLLIIII-VVILTFL   98 (305)
T ss_pred             CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHH-HHHhCccHHHHHHH-HHHHHHH
Confidence            357889999999999831    25788999999999999999999999999998765 22233332222222 2222222


Q ss_pred             HHHHHH-HHcCCChhHHHHHhHHhccChhhHHHHH--HHHhCCchhH---HHHHHHHHHHHHHHHHHHHHHHH
Q 019021          277 AMAIGA-IAMGLHGDVLRVAIIQAALPQSITSFIF--AKEYGLHADV---LSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       277 i~~~~~-~~~~~~~~~~~~~vl~~a~P~a~~~~i~--a~~~~~d~~~---aa~~i~~stlls~~t~~i~~~il  343 (347)
                      +.+.+. ..+++|++....  +-+.+=..-.+.+.  +..-+.++|+   +.+.+.+-..++++..|.....+
T Consensus        99 ~~~~lg~r~~~l~~~~~~L--ia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l  169 (305)
T PF03601_consen   99 LTYWLGRRLFGLDRKLAIL--IAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL  169 (305)
T ss_pred             HHHHHHHHHhCCCHHHHHH--HHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence            233344 667888765422  22222221122222  2233334443   34444444556666677665544

; GO: 0016021 integral to membrane

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=93.93  E-value=3.9  Score=38.29  Aligned_cols=212  Identities=12%  Similarity=0.116  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHhhhhh-hhccccChHHhHHHHHHHHHHHhHHHHHHHhc--cCCCCCcchhhHHHHHHHHHHHHHHH
Q 019021           10 VVVAMVPLYVALMLGYGSV-KWWRIFTLEQCDAINRLVCYFTLPLFTVEFTA--HVDPFKWNYRCIAADALSKLIIAIVL   86 (347)
Q Consensus        10 ~~~~i~pi~~ii~iG~~~~-k~~~~~~~~~~~~ls~lv~~i~lP~lif~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (347)
                      ++..+.-+...+.++|+++ |+.|+ |+ +...+-.-=.-++=.+.+...-.  +.+.++.....-.....+.+.+ ++.
T Consensus        86 ~~~~~~~v~~~~~~~~~lg~r~~~l-~~-~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam-~~~  162 (305)
T PF03601_consen   86 LLIIIIVVILTFLLTYWLGRRLFGL-DR-KLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAM-FLY  162 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC-CH-HHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHH-HHH
Confidence            4455556777888899988 66665 33 34444444455555555544332  3333332222222222222222 222


Q ss_pred             HHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcc
Q 019021           87 ALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMAVDLVVQFSVIQAIVWLPVLLLVLEIRRAGTTDAGAVH  166 (347)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~  166 (347)
                      -.+.+....++.+ + -.+.+..--|++  ..--....+|++....+...-...+++.-++...+.-....++       
T Consensus       163 P~l~~~l~l~~~~-~-G~w~G~sIh~~a--qVvaAg~~~g~~a~~~A~ivKl~Rv~lL~pv~~~l~~~~~~~~-------  231 (305)
T PF03601_consen  163 PLLGHALGLSPQQ-F-GAWAGGSIHDTA--QVVAAGAIYGEEAGDVATIVKLTRVLLLGPVVLVLALFWARRQ-------  231 (305)
T ss_pred             HHHHHHhCCCHHH-H-HHHhhhhhcccc--hHhhhhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence            3344555555333 2 223334446665  2333445678888778888877777776666655432222110       


Q ss_pred             CCcccccccccccCCCChhHHHHHHHHHHHhcCch-hHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHh
Q 019021          167 VDKDLEGTINAEASSRPDFWHLMKLVWLKVAMNPN-AYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSM  245 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~-iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~l  245 (347)
                        ++         +++.+     +    + ..-|. +++.++..+++-.     ..+|+.+.+.++.+++...-++|..+
T Consensus       232 --~~---------~~~~~-----~----~-~~~P~FvlgFl~~~~l~s~-----~~~~~~~~~~~~~~s~~~~~~A~aai  285 (305)
T PF03601_consen  232 --EK---------SSGKS-----K----K-VSFPWFVLGFLAASLLNSL-----GLLPAAVVSALKSLSKWLFALAMAAI  285 (305)
T ss_pred             --cc---------ccccc-----C----c-cCcCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00         00111     0    1 12444 4455555555443     56788999999999999999999999


Q ss_pred             chhhhhchhhhhchhHH
Q 019021          246 GIFMASQEKLIACGTSL  262 (347)
Q Consensus       246 G~~l~~~~~~~~~~~~~  262 (347)
                      |.+.+..+ ..+..+|.
T Consensus       286 Gl~~~~~~-l~~~G~kp  301 (305)
T PF03601_consen  286 GLSTNFKD-LKQVGWKP  301 (305)
T ss_pred             hhcCcHHH-HHhcCccc
Confidence            99987765 34444443

; GO: 0016021 integral to membrane

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=93.36  E-value=1.4  Score=41.36  Aligned_cols=126  Identities=18%  Similarity=0.193  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhccccChH--HhHHHHHHHHHHHhHHHHHHHhccC---CC-CCcchhhHHHH-HH---HHHH
Q 019021           12 VAMVPLYVALMLGYGSVKWWRIFTLE--QCDAINRLVCYFTLPLFTVEFTAHV---DP-FKWNYRCIAAD-AL---SKLI   81 (347)
Q Consensus        12 ~~i~pi~~ii~iG~~~~k~~~~~~~~--~~~~ls~lv~~i~lP~lif~~~~~~---~~-~~~~~~~~~~~-~~---~~~~   81 (347)
                      +....+++=..+|-++ ||+  +++.  ..|...+.+-...+-.+++.++.+.   +. ++.+...+... ..   -...
T Consensus       162 ~L~~~vllP~~~Gq~~-r~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  238 (313)
T PF13593_consen  162 KLVLTVLLPLVLGQLL-RRW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLV  238 (313)
T ss_pred             HHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHH
Confidence            3444455566678887 422  2221  2344566667777777777777654   21 12222212221 11   1222


Q ss_pred             HHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhcccc-----chhHHHHHHHHHH
Q 019021           82 IAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQMA-----VDLVVQFSVIQAI  142 (347)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~~-----~~~~~~~~i~~~~  142 (347)
                      .+.++|..+|..+.+++|+....|  |+-..+.-+|+|++..+|+++.     ..+..+|...|.+
T Consensus       239 ~l~~~~~~~r~~~~~~~d~iA~~F--~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~  302 (313)
T PF13593_consen  239 VLVLGWLAARLLGFSRPDRIAVLF--CGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLF  302 (313)
T ss_pred             HHHHHHHHHhhcCCChhhEEEEEE--EcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHH
Confidence            345667888887777766542344  3447777899999999998853     2345556555533

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=92.33  E-value=12  Score=36.51  Aligned_cols=268  Identities=11%  Similarity=0.027  Sum_probs=131.2

Q ss_pred             HHHHHHHhhhhhhhccccChHHhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHH
Q 019021           17 LYVALMLGYGSVKWWRIFTLEQCDAINRLV-----CYFTLPLFTVEFTAHVDPFKW---NYRCIAADALSKLIIAIVLAL   88 (347)
Q Consensus        17 i~~ii~iG~~~~k~~~~~~~~~~~~ls~lv-----~~i~lP~lif~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   88 (347)
                      ++++..--++. - .++++|+..+..+++.     .|+..-+++-.++...|.+-+   -.++++..+.+.+...+++..
T Consensus        63 il~~f~ps~Lv-~-~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~l  140 (414)
T PF03390_consen   63 ILCIFVPSALV-Y-FGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGL  140 (414)
T ss_pred             HHHHHHHHHHH-H-cCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443 3 7999999999999887     678889999999988776532   235555555666666666666


Q ss_pred             HHHHhCCCchhhHHhH-h-hhhccccccchhHHHHH-HhhccccchhH---HHHHHHHHHHHHHHHHHHHhhhhccc-cC
Q 019021           89 WAKCSSKGSYCWSITS-F-SLCTLTSSLVVGVPLAK-AMYGQMAVDLV---VQFSVIQAIVWLPVLLLVLEIRRAGT-TD  161 (347)
Q Consensus        89 ~~~~~~~~~~~~~~~~-~-~~~~~~N~~~~g~Pi~~-~l~G~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~~~~-~~  161 (347)
                      ...+++.+..+..... + ..++-.+.|.+++...+ ...|.+.-.+.   +......|++.--.+ -++.+-.+++ +-
T Consensus       141 vG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~a-glL~~lg~~~P~l  219 (414)
T PF03390_consen  141 VGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFA-GLLNKLGKKKPKL  219 (414)
T ss_pred             HHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCCC
Confidence            6677666655532111 1 12333456655444443 33455443332   222222222211111 1112111111 11


Q ss_pred             CCCc---cCCcccccccccccCCCChhHH------------HHHHHHHHHh-cCchhHHHHHHHHHHhhccccCCCCChh
Q 019021          162 AGAV---HVDKDLEGTINAEASSRPDFWH------------LMKLVWLKVA-MNPNAYACIFGIAWAFVSNRWHFEMPSI  225 (347)
Q Consensus       162 ~~~~---~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~nP~iia~~~gl~~~~~~~~~~~~lP~~  225 (347)
                      .+|.   +.++|+|.+ +++++++.+..+            .....+.+.+ ..++.+-+++..+++.+    ++ +|+.
T Consensus       220 tGnG~L~~~~~~~~~~-~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~----~l-vP~~  293 (414)
T PF03390_consen  220 TGNGQLLKGGDDEEEE-AKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF----GL-VPES  293 (414)
T ss_pred             CCCceEEeCCcccccc-ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----Cc-CCHH
Confidence            1110   111111111 111111222111            1122233333 25566777777777776    43 5655


Q ss_pred             H----HHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH
Q 019021          226 M----EGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLR  293 (347)
Q Consensus       226 i----~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~  293 (347)
                      +    .+.-+...+..++..|+.+|.....-+.....-.......++.-.+..-+....+.+++|+-|.+..
T Consensus       294 ~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsA  365 (414)
T PF03390_consen  294 LEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESA  365 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            5    4556677788899999999998432221221112222222333333333344445667787665543

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=91.85  E-value=3.9  Score=38.06  Aligned_cols=129  Identities=16%  Similarity=0.151  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHhhccccCC-C-CChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHH
Q 019021          202 AYACIFGIAWAFVSNRWHF-E-MPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMA  279 (347)
Q Consensus       202 iia~~~gl~~~~~~~~~~~-~-lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~  279 (347)
                      ++=.++|.+++-+-+  +. + +-+ ..+.+-.=+.....+-+++.|.+++...  .....|+-......|+++.-++.+
T Consensus        16 vVPLllgalinTf~P--~~l~~iG~-fT~al~~G~~~iig~~l~~~Ga~I~~k~--~~~~lkkg~~ll~~K~~~~~~lgl   90 (314)
T PF03812_consen   16 VVPLLLGALINTFFP--NALEIIGG-FTTALFTGANPIIGVFLFCMGAQIDLKS--AGKVLKKGGVLLLVKFIIGALLGL   90 (314)
T ss_pred             HHHHHHHHHHHhcCC--ChhhccCc-HHHHHHcchHHHHHHHHHHhccccchhh--hhHHHHhhhHHHHHHHHHHHHHHH
Confidence            455666777765411  11 1 222 2233323455667778899999998764  345677888888999999999999


Q ss_pred             HHHHHcCCChh------HHHHHhHHhccChhhHHHHH--HHHhCCchhHHHHHHHHHHHHHHHHHH
Q 019021          280 IGAIAMGLHGD------VLRVAIIQAALPQSITSFIF--AKEYGLHADVLSTAVIFGMIVSLPLMI  337 (347)
Q Consensus       280 ~~~~~~~~~~~------~~~~~vl~~a~P~a~~~~i~--a~~~~~d~~~aa~~i~~stlls~~t~~  337 (347)
                      .+.+++|.++.      -...+.+.+++-....+...  ..+||-++| .++. .+..+.+-|.++
T Consensus        91 ~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D-~gA~-~i~sl~~GPf~t  154 (314)
T PF03812_consen   91 LVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEED-VGAF-SILSLNDGPFFT  154 (314)
T ss_pred             HHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHH-hHHH-HHHHhhhhHHHH
Confidence            99999988763      45667777777665555444  458884444 4333 333444444443

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=90.67  E-value=9  Score=32.00  Aligned_cols=121  Identities=12%  Similarity=0.088  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHH----H
Q 019021          205 CIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMA----I  280 (347)
Q Consensus       205 ~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~----~  280 (347)
                      ++.+.+++... ..+.+.|++..+.-+.+-+       ..+|.+++...   .+..++.+.....=.+..-.+..    .
T Consensus        28 mi~~~~~~~~~-~~~~~~P~~~~~~~qviiG-------~~iG~~f~~~~---l~~~~~~~~~~l~~~~~~l~~~~~~~~~   96 (156)
T TIGR03082        28 LLAGAVLSLAG-GLEITLPPWLLALAQVVIG-------ILIGSRFTREV---LAELKRLWPAALLSTVLLLALSALLAWL   96 (156)
T ss_pred             HHHHHHHHhcC-CccCCCCHHHHHHHHHHHH-------HHHHccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455441 0134678776665554333       23455554332   12223333322222222222222    2


Q ss_pred             HHHHcCCChhHHHHHhHHhccChhhHH-HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 019021          281 GAIAMGLHGDVLRVAIIQAALPQSITS-FIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYF  340 (347)
Q Consensus       281 ~~~~~~~~~~~~~~~vl~~a~P~a~~~-~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~  340 (347)
                      +.+..+.|...    .+.+.+|-+... ..+|+++|.|+..++..-..=.++-+.+.|.+.
T Consensus        97 l~~~~~~~~~t----a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~  153 (156)
T TIGR03082        97 LARLTGVDPLT----AFLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLA  153 (156)
T ss_pred             HHHHHCCCHHH----HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555543    357889988884 567899999999888777666666666666654

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=89.63  E-value=18  Score=37.49  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=64.7

Q ss_pred             HhcCchhHHHHH-HHHHHhhccccCCCC-ChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHH
Q 019021          196 VAMNPNAYACIF-GIAWAFVSNRWHFEM-PSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIA  273 (347)
Q Consensus       196 ~~~nP~iia~~~-gl~~~~~~~~~~~~l-P~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii  273 (347)
                      -++.|.+++-++ |++++..    +..+ ++  .+.++.++...+.+-||.+|..++..+ . ++..+..+.....-+++
T Consensus        26 rl~lp~vlgyilaGillGP~----~lg~i~~--~~~i~~laelGvv~LlF~iGLEl~~~~-l-~~~~~~~~~~g~~qv~~   97 (621)
T PRK03562         26 RLGLGSVLGYLIAGCIIGPW----GLRLVTD--VESILHFAEFGVVLMLFVIGLELDPQR-L-WKLRRSIFGGGALQMVA   97 (621)
T ss_pred             HhCCChHHHHHHHHHHhCcc----cccCCCC--HHHHHHHHHHHHHHHHHHHHhCcCHHH-H-HHHHHHHHHHHHHHHHH
Confidence            368888888755 6776543    3322 22  245788999999999999999987664 2 33444544444444433


Q ss_pred             HHHHHHHHHHHcCCChhHHH-HHhHHhccChhhHHHHHHHH
Q 019021          274 GPAAMAIGAIAMGLHGDVLR-VAIIQAALPQSITSFIFAKE  313 (347)
Q Consensus       274 ~P~i~~~~~~~~~~~~~~~~-~~vl~~a~P~a~~~~i~a~~  313 (347)
                      .-.+...+++.+|.+..... .....+.+.+|+..-++.++
T Consensus        98 ~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~  138 (621)
T PRK03562         98 CGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNER  138 (621)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333445566676654322 23334445566665555554

>COG2855 Predicted membrane protein [Function unknown]

Probab=89.57  E-value=4  Score=38.41  Aligned_cols=132  Identities=14%  Similarity=0.144  Sum_probs=78.1

Q ss_pred             cCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHH
Q 019021          198 MNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAA  277 (347)
Q Consensus       198 ~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i  277 (347)
                      ..|+++|+++|++++..     .+.|+-....++.-++..-..+...+|.++....- .....+ .......-+...=++
T Consensus        37 l~al~lAIllGi~l~~l-----~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i-~~~G~~-~v~~~~~~l~~t~~~  109 (334)
T COG2855          37 LSALTLAILLGILLGIL-----PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDI-ADVGGS-GVLIIAITLSSTFLF  109 (334)
T ss_pred             chHHHHHHHHHHHHhcc-----ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHH-HHcCcc-HHHHHHHHHHHHHHH
Confidence            35899999999999843     46677788889999999999999999999987652 222222 122222222233333


Q ss_pred             HHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHH--HhCCchhHHHHHHHHHHHHHHHHHHH
Q 019021          278 MAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAK--EYGLHADVLSTAVIFGMIVSLPLMIA  338 (347)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~--~~~~d~~~aa~~i~~stlls~~t~~i  338 (347)
                      ++.....+++|+....  .+-+.+-..-.+.+.|.  .-+.|+|+.+..+..-++++...+.+
T Consensus       110 ~~~lg~~lgld~~~a~--Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~ll  170 (334)
T COG2855         110 AYFLGKLLGLDKKLAL--LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLL  170 (334)
T ss_pred             HHHHHHHhCCCHHHHH--HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHH
Confidence            4444556788876542  22222333333333333  44556666665555555555444433

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=89.21  E-value=2.5  Score=40.11  Aligned_cols=99  Identities=9%  Similarity=-0.018  Sum_probs=63.8

Q ss_pred             HHHHHHHhhhhhhhccccChHHhH---HHHHHHHHHHhHHHHH-HHhccCCCCCc----chhhHHHHHHHHHHHHHHHHH
Q 019021           17 LYVALMLGYGSVKWWRIFTLEQCD---AINRLVCYFTLPLFTV-EFTAHVDPFKW----NYRCIAADALSKLIIAIVLAL   88 (347)
Q Consensus        17 i~~ii~iG~~~~k~~~~~~~~~~~---~ls~lv~~i~lP~lif-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   88 (347)
                      ...++.+|.++ |..|+++++..+   ...+++..-..+.++. ..+..+++++.    ++..+.....+.+...+.+++
T Consensus       207 ~v~mII~~vi~-k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l  285 (347)
T TIGR00783       207 YAFMILIAAAL-KAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF  285 (347)
T ss_pred             HHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence            55678888888 779999987544   5666666666666655 46666777652    244444444555555677888


Q ss_pred             HHHHhCCCchhhHHh-Hhhhhccccccch
Q 019021           89 WAKCSSKGSYCWSIT-SFSLCTLTSSLVV  116 (347)
Q Consensus        89 ~~~~~~~~~~~~~~~-~~~~~~~~N~~~~  116 (347)
                      ..|+++--+.|..++ .+|.+..+-+|.+
T Consensus       286 vGKllG~YPiE~aItagLC~~~~GGtGDv  314 (347)
T TIGR00783       286 LGKLMGMYPVESAITAGLCNSGMGGTGDV  314 (347)
T ss_pred             HHHHhCCChHHHHHHHhhhccCCCCCCce
Confidence            899987666666544 3554555555554

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=88.63  E-value=0.73  Score=44.02  Aligned_cols=105  Identities=11%  Similarity=0.077  Sum_probs=74.2

Q ss_pred             HHHHHHHhchhhhhchhhhhchh---HHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHhHHhccChhh-HHHHHHHH
Q 019021          238 TGTAMFSMGIFMASQEKLIACGT---SLTIFGMVLKFIAGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSI-TSFIFAKE  313 (347)
Q Consensus       238 ~plaL~~lG~~l~~~~~~~~~~~---~~~~~~~~~rlii~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~-~~~i~a~~  313 (347)
                      .-.-++.+|..++.+..  ++.+   +......+.+++++|+..+.....+.++........+.++.+++. .++..+..
T Consensus       119 l~~~~ls~g~~~~~~~~--~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~  196 (371)
T KOG2718|consen  119 LLSNMLSFGIKLDMDLF--AGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKR  196 (371)
T ss_pred             HHHHHHHHhcCccHHHH--hhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeec
Confidence            34567788888776542  2222   234445666999999999888766666666644555555555554 45555555


Q ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021          314 YGLHADVLSTAVIFGMIVSLPLMIAYFAILE  344 (347)
Q Consensus       314 ~~~d~~~aa~~i~~stlls~~t~~i~~~il~  344 (347)
                      -+.|...+..+...||+.+++++|+|...+.
T Consensus       197 ~~g~v~lsilmT~~stv~avi~~pl~s~~l~  227 (371)
T KOG2718|consen  197 LPGDVTLSILMTTISTVLAVILTPLLSILLG  227 (371)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5888888899999999999999999988764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.33  E-value=24  Score=35.96  Aligned_cols=137  Identities=15%  Similarity=0.067  Sum_probs=83.3

Q ss_pred             CchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHH
Q 019021          199 NPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAM  278 (347)
Q Consensus       199 nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~  278 (347)
                      ++.+-|.+.|++++-.      +..+.+.+-...+.+...|+--+.+|++++... . ...+......++.+++.-++.+
T Consensus       249 s~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~-l-~~~~~~~~~~~~~~~v~K~~~~  320 (558)
T PRK10669        249 SFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMI-L-IQQPLAVLATLAIIVFGKSLAA  320 (558)
T ss_pred             cHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHH-H-HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666665421      222333333334567789999999999987653 1 1233334445556666666766


Q ss_pred             HHHHHHcCCChh-HHHHHhHHh-ccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          279 AIGAIAMGLHGD-VLRVAIIQA-ALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       279 ~~~~~~~~~~~~-~~~~~vl~~-a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il  343 (347)
                      +..+...+.+.. .....+.++ -...+.....++.+.|.=++...+.+...++++....|.+....
T Consensus       321 ~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~  387 (558)
T PRK10669        321 FFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL  387 (558)
T ss_pred             HHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666776543 333333333 35666666666667776556666678888888888888776543

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=88.22  E-value=3.2  Score=38.71  Aligned_cols=116  Identities=14%  Similarity=0.056  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 019021          202 AYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAMAIG  281 (347)
Q Consensus       202 iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~  281 (347)
                      ++=.++|.+++-+-+. -.++-++-...++.=+.....+-+++.|.+++...  .....|+-......|+++.-++.+.+
T Consensus        16 ~vPl~lga~inTf~P~-~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~--~~~~l~kg~~l~~~K~~~~~~~g~~~   92 (312)
T PRK12460         16 VVPLLIGALINTFFPQ-ALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKA--APQALLKGGVLTITKLGVAIVIGLLV   92 (312)
T ss_pred             HHHHHHHHHHHhccCc-chhhCcccHHHHhcChHHHHHHHHHHhcCeeeccc--cchhhhhhhhhhhHHHHHHHHHHHHH
Confidence            3345566666654110 12333343444444455667778999999998754  23466777777889999999999999


Q ss_pred             HHHcCCChh-HHHHHhHHhccChhhHHHHH---HHHhCCchhHH
Q 019021          282 AIAMGLHGD-VLRVAIIQAALPQSITSFIF---AKEYGLHADVL  321 (347)
Q Consensus       282 ~~~~~~~~~-~~~~~vl~~a~P~a~~~~i~---a~~~~~d~~~a  321 (347)
                      ..++|.|+. -...+.+.+++=- .|..+|   ..+||-++|..
T Consensus        93 ~~~~g~~g~~Gls~laiiaa~~~-~Ng~ly~al~~~yG~~~d~g  135 (312)
T PRK12460         93 GKFFGAEGIFGLSGLAIVAAMSN-SNGGLYAALMGEFGDERDVG  135 (312)
T ss_pred             HHHcCcccccchHHHHHHHHHhc-CcHHHHHHHHHHcCCHhhhh
Confidence            999998874 3555666666643 444445   67999544433

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=87.57  E-value=37  Score=34.98  Aligned_cols=136  Identities=14%  Similarity=0.031  Sum_probs=87.8

Q ss_pred             CchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHHH
Q 019021          199 NPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAAM  278 (347)
Q Consensus       199 nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~  278 (347)
                      ++.+-|.+.|+++.-      -+....+.+-++.+.+...|+-.+.+|++++... . ...+......++..++.-++.+
T Consensus       238 s~~LGAFlaGl~l~~------s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~-l-~~~~~~il~~~~~~l~~K~~~~  309 (601)
T PRK03659        238 SMALGTFIAGVLLAE------SEYRHELEIAIEPFKGLLLGLFFISVGMALNLGV-L-YTHLLWVLISVVVLVAVKGLVL  309 (601)
T ss_pred             cHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH-H-HHhHHHHHHHHHHHHHHHHHHH
Confidence            455555555555542      2233456667777788999999999999987653 2 2345555555666777777778


Q ss_pred             HHHHHHcCCChhHH-HHHhH-HhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          279 AIGAIAMGLHGDVL-RVAII-QAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAI  342 (347)
Q Consensus       279 ~~~~~~~~~~~~~~-~~~vl-~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~i  342 (347)
                      +..+...+.+.... ..... ...-.-+......+.++|.=++...+.+...+++|....|+....
T Consensus       310 ~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~  375 (601)
T PRK03659        310 YLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKL  375 (601)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777788876433 33333 334455555555677777655555566677778888888877654

>TIGR00698 conserved hypothetical integral membrane protein

Probab=87.40  E-value=9.2  Score=36.29  Aligned_cols=140  Identities=9%  Similarity=-0.009  Sum_probs=76.1

Q ss_pred             cCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHHHHH
Q 019021          198 MNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAGPAA  277 (347)
Q Consensus       198 ~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i  277 (347)
                      .++.++|+++|++++-.   ...+.|+.....++.-++-..-.+...+|.+++... .....++..... ..=....=.+
T Consensus        31 l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~-i~~~G~~~l~~~-~~~v~~~~~~  105 (335)
T TIGR00698        31 LSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPY-IADVGPNEIVAD-TLILTSTFFL  105 (335)
T ss_pred             CcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHH-HHHhhHHHHHHH-HHHHHHHHHH
Confidence            57788999999998643   012466777788888888899999999999998765 222222222111 1111111111


Q ss_pred             HHHHH-HHcCCChhHHHHHhHHhccChhhHHHHHHH--HhCCchh---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 019021          278 MAIGA-IAMGLHGDVLRVAIIQAALPQSITSFIFAK--EYGLHAD---VLSTAVIFGMIVSLPLMIAYFAILE  344 (347)
Q Consensus       278 ~~~~~-~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~--~~~~d~~---~aa~~i~~stlls~~t~~i~~~il~  344 (347)
                      ...+. ..+++|++..  ..+-+.+=..-.+.+.|.  .-+.|+|   .+.+.+.+-..++++..|.....++
T Consensus       106 ~~~~g~k~l~l~~~~~--~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~  176 (335)
T TIGR00698       106 TVFLGSSRLKLDKQMS--ILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS  176 (335)
T ss_pred             HHHHHHHHhCCChhHH--HHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence            22233 4578876654  222222222222333322  2233333   4445555555567777777765553

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=86.64  E-value=30  Score=32.94  Aligned_cols=101  Identities=13%  Similarity=0.125  Sum_probs=64.6

Q ss_pred             ccccChHHhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHHHHhCCCchhhHH
Q 019021           31 WRIFTLEQCDAINRLV-----CYFTLPLFTVEFTAHVDPFKW---NYRCIAADALSKLIIAIVLALWAKCSSKGSYCWSI  102 (347)
Q Consensus        31 ~~~~~~~~~~~ls~lv-----~~i~lP~lif~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (347)
                      .|+++|+..+..+++.     .|+.+-|++-.++...|.+-+   -..+++..+.+.....+++.....+++.+..+...
T Consensus         6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~~~   85 (347)
T TIGR00783         6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLM   85 (347)
T ss_pred             eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHhhh
Confidence            5899999999998864     578899999999988776532   23455555556555556666666666665544321


Q ss_pred             ---hHhhhhccccccchhHHHHHH-hhccccchh
Q 019021          103 ---TSFSLCTLTSSLVVGVPLAKA-MYGQMAVDL  132 (347)
Q Consensus       103 ---~~~~~~~~~N~~~~g~Pi~~~-l~G~~~~~~  132 (347)
                         .-.+ ++-.+.|.+++...++ ..|++.-.+
T Consensus        86 ~i~lPIm-~GG~GaGavPLS~~Y~~~~g~~~~~~  118 (347)
T TIGR00783        86 YIVMPIM-AGGVGAGIVPLSIIYSAITGRSSEEI  118 (347)
T ss_pred             eeeehhc-CCCcccchhhHHHHHHHHhCCCHHHH
Confidence               1122 3445577666666664 567665433

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=84.77  E-value=18  Score=34.17  Aligned_cols=56  Identities=14%  Similarity=0.164  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhc-cccchhHH
Q 019021           77 LSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYG-QMAVDLVV  134 (347)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G-~~~~~~~~  134 (347)
                      +-...++.++++.+|..+.+-++..-.+|  ++-+|..-++++++.++|| +++.+.+.
T Consensus       255 iy~~~~~~i~~~i~k~lgl~y~~~~~~~f--t~aSNnfeLAiAvAi~lfG~~s~aA~a~  311 (342)
T COG0798         255 IYFLLMFFISYFIAKALGLPYEDAAALVF--TGASNNFELAIAVAIALFGLTSGAALAT  311 (342)
T ss_pred             HHHHHHHHHHHHHHHHhCCChhhhhceee--eeccccHHHHHHHHHHhcCccccchhhh
Confidence            45566778889999987765444332445  4568888899999999999 55544433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=82.61  E-value=55  Score=32.61  Aligned_cols=36  Identities=11%  Similarity=0.152  Sum_probs=27.0

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhhccccCC-----CCChhHHHHHH
Q 019021          192 VWLKVAMNPNAYACIFGIAWAFVSNRWHF-----EMPSIMEGSIL  231 (347)
Q Consensus       192 ~~~~~~~nP~iia~~~gl~~~~~~~~~~~-----~lP~~i~~~l~  231 (347)
                      .+|+++++|++||+.++-.....    +.     ..|.++.+.++
T Consensus       250 P~~~i~ts~~vwai~~~~f~~~~----~~~~l~~y~PtY~~~VL~  290 (466)
T KOG2532|consen  250 PYKAILTSPPVWAIWISAFGGNW----GFYLLLTYLPTYLKEVLG  290 (466)
T ss_pred             CHHHHHcCHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHhC
Confidence            57889999999999998877655    33     35777765554

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=82.43  E-value=49  Score=34.07  Aligned_cols=110  Identities=14%  Similarity=0.018  Sum_probs=61.6

Q ss_pred             hcCchhHHHHH-HHHHHhhccccCCCC-ChhHHHHHHHHHHhHHHHHHHHhchhhhhchhhhhchhHHHHHHHHHHHHHH
Q 019021          197 AMNPNAYACIF-GIAWAFVSNRWHFEM-PSIMEGSILIMSRAGTGTAMFSMGIFMASQEKLIACGTSLTIFGMVLKFIAG  274 (347)
Q Consensus       197 ~~nP~iia~~~-gl~~~~~~~~~~~~l-P~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~  274 (347)
                      ++-|.+++.++ |++++..    +..+ ++  .+.+..++.....+-||.+|..++..+ . ++..+........-+++.
T Consensus        27 l~~p~ilg~ilaGillGP~----~lg~i~~--~~~i~~laelGvv~LLF~iGLel~~~~-l-~~~~~~~~~~g~~~v~~t   98 (601)
T PRK03659         27 LGIGAVLGYLLAGIAIGPW----GLGFISD--VDEILHFSELGVVFLMFIIGLELNPSK-L-WQLRRSIFGVGAAQVLLS   98 (601)
T ss_pred             hCCChHHHHHHHHHHhccc----cccCCCc--HHHHHHHHHHHHHHHHHHHHhcCCHHH-H-HHHHHHHHHHHHHHHHHH
Confidence            67888887754 6666543    2221 22  235678899999999999999988764 2 333444444444443332


Q ss_pred             HHHHHHHHHHcCCChhHHH-HHhHHhccChhhHHHHHHHHh
Q 019021          275 PAAMAIGAIAMGLHGDVLR-VAIIQAALPQSITSFIFAKEY  314 (347)
Q Consensus       275 P~i~~~~~~~~~~~~~~~~-~~vl~~a~P~a~~~~i~a~~~  314 (347)
                      -++...+.+.++.+..... ..+..+.+.+|+..-++.++-
T Consensus        99 ~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~  139 (601)
T PRK03659         99 AAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKG  139 (601)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            2233334445566643322 223334456666655555543

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=80.52  E-value=56  Score=31.42  Aligned_cols=80  Identities=11%  Similarity=-0.024  Sum_probs=51.0

Q ss_pred             HHHHHHhhhhhhhccccChHHhHHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHH
Q 019021           18 YVALMLGYGSVKWWRIFTLEQCDAINRLV-----CYFTLPLFTVEFTAHVDPFKW---NYRCIAADALSKLIIAIVLALW   89 (347)
Q Consensus        18 ~~ii~iG~~~~k~~~~~~~~~~~~ls~lv-----~~i~lP~lif~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   89 (347)
                      +.+...-|+. - .++++++..+..+.+.     .|+.++|++--++...+.+-+   ....++..+++.......+.+.
T Consensus        81 l~~fvaa~~v-~-~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lV  158 (438)
T COG3493          81 LALFVAAYLV-F-YNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILV  158 (438)
T ss_pred             HHHHHHHHHH-H-hccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3334444443 3 6889999999998885     689999999999988775432   1234444444444444555555


Q ss_pred             HHHhCCCchh
Q 019021           90 AKCSSKGSYC   99 (347)
Q Consensus        90 ~~~~~~~~~~   99 (347)
                      .-.++.+.+|
T Consensus       159 G~~~G~~~~d  168 (438)
T COG3493         159 GLLFGLSFQD  168 (438)
T ss_pred             HHHhCCChHH
Confidence            5556655444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	99.2
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	96.93

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=99.20  E-value=2.4e-10  Score=106.77  Aligned_cols=142  Identities=16%  Similarity=0.108  Sum_probs=117.1

Q ss_pred             HHHhcCchhHHHHHHHHHHhhccccCCCCChhHHHHHHHHHHhHHHHHHHHhchhhhhchhh-hhchhHHHHHHHHHHHH
Q 019021          194 LKVAMNPNAYACIFGIAWAFVSNRWHFEMPSIMEGSILIMSRAGTGTAMFSMGIFMASQEKL-IACGTSLTIFGMVLKFI  272 (347)
Q Consensus       194 ~~~~~nP~iia~~~gl~~~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~lG~~l~~~~~~-~~~~~~~~~~~~~~rli  272 (347)
                      .+.+.++..+.++++.++...       .|+... .++..-....++.|+..|..++..+-. ..+++|........+++
T Consensus        13 ~~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v   84 (332)
T 3zux_A           13 SSFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA   84 (332)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence            355678888888888888765       232211 122334467889999999999876521 12466777888999999


Q ss_pred             HHHHHHHHHHHHcCCChhHHHHHhHHhccChhhHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019021          273 AGPAAMAIGAIAMGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMIVSLPLMIAYFAIL  343 (347)
Q Consensus       273 i~P~i~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~d~~~aa~~i~~stlls~~t~~i~~~il  343 (347)
                      ++|++++++...++.+++....+++.+++|++..+.+++..+|.|.+.+.+.+.+||+++++++|+|..++
T Consensus        85 i~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~  155 (332)
T 3zux_A           85 IMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLML  155 (332)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999899999999999999999999999999999999999999999999999999999998876

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=96.93  E-value=0.012  Score=54.36  Aligned_cols=70  Identities=19%  Similarity=0.030  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhHHhHhhhhccccccchhHHHHHHhhccc--cchhHHHHHHHHHHHH
Q 019021           73 AADALSKLIIAIVLALWAKCSSKGSYCWSITSFSLCTLTSSLVVGVPLAKAMYGQM--AVDLVVQFSVIQAIVW  144 (347)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~g~Pi~~~l~G~~--~~~~~~~~~i~~~~~~  144 (347)
                      ....+...+.+.++|..+|.++.+++++....+. ++..|++ +|+|++...||++  ......+|...|++..
T Consensus       232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e-~G~qNs~-lai~lA~~~F~~~p~~alp~~iy~~~q~i~~  303 (332)
T 3zux_A          232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIE-VGMQNSG-LAAALAAAHFAAAPVVAVPGALFSVWHNISG  303 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHCCCHH-HHHHHHHHHSTTCGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhh-hhhccHH-HHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            3334455667788999999988877665545563 5678885 9999999999643  3335667777765553

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00