Citrus Sinensis ID: 019025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLIY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHcHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHEEEEcccccEEcccccccccccccccccccEEEEcEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccEEEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLPQKQAEEAIVSNfsetehegggkeegredeQQQQHSMLSMKSFlwhggsawdaWFSCASNQVAQVLLTLpysfsqmgMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGAccattvfipsfhnyRIWSFLGLGMTTYTAWYLTIAAVVHGqvegashtaptKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDqllnhsnafsllpknrWRDAAVILMLIHQVQFqftfigftdlplleqliy
Flexible Loop (DISEMBL)
MLPQKQAEEAivsnfsetehegggkeegrEDEQQQQHSMLSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLIY
Low Complexity Region (SEG)
MLPQKQAEEAIVSNFSetehegggkeegredeqqqqHSMLSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLIY
Disordered region (IsUnstruct)
******************************************KSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLI*
Disordered Region (DISOPRED)
*******************************************SFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLIY
Disordered Region (DISEMBL)
********EAIVSNF***********************MLSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLIY
Disordered Region (DISPRO)
*****QAEEAI*SNFSETE*****************HSMLSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLIY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q9FEL7	484	Auxin transporter-like pr	N/A	no	0.953	0.683	0.851	1e-168
Q8L884	482	Auxin transporter-like pr	N/A	no	0.959	0.690	0.824	1e-165
Q5N892	492	Auxin transporter-like pr	yes	no	0.971	0.684	0.805	1e-161
Q688J2	482	Auxin transporter-like pr	no	no	0.948	0.682	0.799	1e-159
Q96247	485	Auxin transporter protein	yes	no	0.956	0.684	0.801	1e-159
Q9LFB2	488	Auxin transporter-like pr	no	no	0.968	0.688	0.813	1e-159
Q9FEL8	479	Auxin transporter-like pr	N/A	no	0.956	0.693	0.782	1e-155
Q8L883	490	Auxin transporter-like pr	N/A	no	0.942	0.667	0.765	1e-151
Q9S836	483	Auxin transporter-like pr	no	no	0.945	0.679	0.751	1e-150
Q9CA25	470	Auxin transporter-like pr	no	no	0.953	0.704	0.717	1e-146

>sp|Q9FEL7|LAX2_MEDTR Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1

 Score =  592 bits (1527), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/343 (85%), Positives = 308/343 (89%), Gaps = 12/343 (3%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGG--GKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFS 58
           MLPQKQ EEAIVS+F+ET+ + G  G+EE  ED     HS  S+K+FLWHGGS WDAWFS
Sbjct: 1   MLPQKQGEEAIVSSFNETDQQEGVVGREEEVED-----HS-FSVKNFLWHGGSVWDAWFS 54

Query: 59  CASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVS 118
           CASNQVAQVLLTLPYSFSQ+GMLSGILLQ+FYG LGSWTAYLISVLYVEYRSRKEKENV+
Sbjct: 55  CASNQVAQVLLTLPYSFSQLGMLSGILLQVFYGILGSWTAYLISVLYVEYRSRKEKENVN 114

Query: 119 FKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWT 178
           FKNHVIQWFEVLDGLLGPYWKA+GLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWT
Sbjct: 115 FKNHVIQWFEVLDGLLGPYWKALGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWT 174

Query: 179 YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVL 238
           YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIA++VHGQ E  +HT P KLVL
Sbjct: 175 YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASIVHGQAENVTHTGPKKLVL 234

Query: 239 YFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQ 298
           YFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLTIPSATAVYW+FGD+
Sbjct: 235 YFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPSATAVYWAFGDE 294

Query: 299 LLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           LLNHSNAFSLLPKN WRD AVILMLIH    QF   GF   PL
Sbjct: 295 LLNHSNAFSLLPKNGWRDGAVILMLIH----QFITFGFACTPL 333

Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex (By similarity). May be involved in lateral roots and nodules formation.
Medicago truncatula (taxid: 3880)

>sp|Q8L884|LAX4_MEDTR Auxin transporter-like protein 4 OS=Medicago truncatula GN=LAX4 PE=2 SV=1

 Score =  581 bits (1497), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/341 (82%), Positives = 301/341 (88%), Gaps = 8/341 (2%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           ML Q QAEEAIV+N +ETE EGG   E    E  +  SM + KSFLWHGGS WDAWFSCA
Sbjct: 1   MLSQNQAEEAIVTNMNETEQEGGSSLE----EIAEDQSMFNFKSFLWHGGSVWDAWFSCA 56

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQ+GM+SGI+ QIFYG +GSWTAYLISVLYVEYR+RKEKENV+FK
Sbjct: 57  SNQVAQVLLTLPYSFSQLGMVSGIVFQIFYGLIGSWTAYLISVLYVEYRARKEKENVNFK 116

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           NHVIQWFEVLDGLLG YWKA+GLAFNCTFLLFGSVIQLIACASNIYYIND+LDKRTWTYI
Sbjct: 117 NHVIQWFEVLDGLLGRYWKALGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYI 176

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWY+ IAA+V+GQ+E   H+ PTKLVLYF
Sbjct: 177 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYMAIAAIVNGQIENVVHSGPTKLVLYF 236

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIY  ATLYVFTLTIPSA AVYW+FGD+LL
Sbjct: 237 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYFLATLYVFTLTIPSAVAVYWAFGDELL 296

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           NHSNAFSLLPKN +RDAAVILMLIH    QF   GF   PL
Sbjct: 297 NHSNAFSLLPKNGFRDAAVILMLIH----QFITFGFACTPL 333

Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex (By similarity). May be involved in lateral roots and nodules formation.

Medicago truncatula (taxid: 3880)

>sp|Q5N892|LAX1_ORYSJ Auxin transporter-like protein 1 OS=Oryza sativa subsp. japonica GN=Os01g0856500 PE=2 SV=2

 Score =  567 bits (1462), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 278/345 (80%), Positives = 299/345 (86%), Gaps = 8/345 (2%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGG----GKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAW 56
           M+P++QAEEAIV++ +  E E G       E   D+        SMK+ LWHGGS WDAW
Sbjct: 1   MVPREQAEEAIVADSNGKEEEVGVMGVSAGEHGADDHHGGGGKFSMKNLLWHGGSVWDAW 60

Query: 57  FSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKEN 116
           FSCASNQVAQVLLTLPYSFSQ+GMLSG+LLQ+FYGF+GSWTAYLISVLYVEYRSRKEKE 
Sbjct: 61  FSCASNQVAQVLLTLPYSFSQLGMLSGVLLQLFYGFMGSWTAYLISVLYVEYRSRKEKEG 120

Query: 117 VSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRT 176
           VSFKNHVIQWFEVLDGLLGPYWKA GLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRT
Sbjct: 121 VSFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRT 180

Query: 177 WTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKL 236
           WTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYL IAA+++GQ EG +HT PTKL
Sbjct: 181 WTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEGITHTGPTKL 240

Query: 237 VLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFG 296
           VLYFTGATNILYTFGGHAVTVEIMHAMWKP KFKYIYL ATLYVFTLT+PSA+A+YW+FG
Sbjct: 241 VLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPSASAMYWAFG 300

Query: 297 DQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           D+LL HSNAFSLLPK  WRDAAVILMLIH    QF   GF   PL
Sbjct: 301 DELLTHSNAFSLLPKTGWRDAAVILMLIH----QFITFGFACTPL 341

Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q688J2|LAX2_ORYSJ Auxin transporter-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0447200 PE=2 SV=1

 Score =  562 bits (1448), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 275/344 (79%), Positives = 296/344 (86%), Gaps = 15/344 (4%)

Query: 1   MLPQ-KQAEEAIVSNFSETEHEGGGKEEG--REDEQQQQHSMLSMKSFLWHGGSAWDAWF 57
           M+P   QAEEAIV++         GKEE   R     +Q    SM S LWHGGS WDAWF
Sbjct: 1   MVPAGDQAEEAIVAD--------AGKEEAEVRAAMGVEQDGKFSMTSLLWHGGSVWDAWF 52

Query: 58  SCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENV 117
           SCASNQVAQVLLTLPYSFSQ+GMLSG+LLQ+FYG +GSWTAYLISVLYVEYR+RKEKE V
Sbjct: 53  SCASNQVAQVLLTLPYSFSQLGMLSGLLLQVFYGLMGSWTAYLISVLYVEYRARKEKEGV 112

Query: 118 SFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTW 177
           SFKNHVIQWFEVLDGLLGPYWKA GLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTW
Sbjct: 113 SFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTW 172

Query: 178 TYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLV 237
           TYIFGACC+TTVFIPSFHNYRIWSFLGLGMTTYTAWYL IAA VHGQV+G +H+ P+K+V
Sbjct: 173 TYIFGACCSTTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAAVHGQVDGVTHSGPSKMV 232

Query: 238 LYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGD 297
           LYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLT+PSA+A+YW+FGD
Sbjct: 233 LYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLVATLYVFTLTLPSASAMYWAFGD 292

Query: 298 QLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
            LL HSNAFSLLP++ WRDAAVILMLIH    QF   GF   PL
Sbjct: 293 ALLTHSNAFSLLPRSGWRDAAVILMLIH----QFITFGFACTPL 332

Carrier protein involved in proton-driven auxin influx. May mediate the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96247|AUX1_ARATH Auxin transporter protein 1 OS=Arabidopsis thaliana GN=AUX1 PE=1 SV=1

 Score =  560 bits (1444), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/337 (80%), Positives = 294/337 (87%), Gaps = 5/337 (1%)

Query: 5   KQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCASNQV 64
            +  EAIV+N + T+   G +  G+++E+    +  ++ +FLWHGGS WDAWFSCASNQV
Sbjct: 2   SEGVEAIVANDNGTDQVNGNRT-GKDNEEHDGSTGSNLSNFLWHGGSVWDAWFSCASNQV 60

Query: 65  AQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 124
           AQVLLTLPYSFSQ+GMLSGI+LQIFYG LGSWTAYLISVLYVEYR+RKEKE  SFKNHVI
Sbjct: 61  AQVLLTLPYSFSQLGMLSGIVLQIFYGLLGSWTAYLISVLYVEYRARKEKEGKSFKNHVI 120

Query: 125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGAC 184
           QWFEVLDGLLG YWKA+GLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYIFGAC
Sbjct: 121 QWFEVLDGLLGSYWKALGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYIFGAC 180

Query: 185 CATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGAT 244
           CATTVFIPSFHNYRIWSFLGLGMTTYTAWYL IA+++HGQ EG  H+ PTKLVLYFTGAT
Sbjct: 181 CATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIASIIHGQAEGVKHSGPTKLVLYFTGAT 240

Query: 245 NILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSN 304
           NILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLTIPSA AVYW+FGD LL+HSN
Sbjct: 241 NILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPSAAAVYWAFGDALLDHSN 300

Query: 305 AFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           AFSL+PKN WRDAAVILMLIH    QF   GF   PL
Sbjct: 301 AFSLMPKNAWRDAAVILMLIH----QFITFGFACTPL 333

Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex. Unloads auxin from the mature phloem to deliver the hormone to the root meristem via the protophloem cell files. Coordinated subcellular localization of AUX1 is regulated by a brefeldin A-sensitive (BFA) vesicle trafficking process. Involved in lateral root formation, trichoblast polarization and root hair elongation. Required for gravitropism and thigmotropism, especially in roots, by modulating responses to auxin, ethylene and cytokinins such as benzyladenine (BA). Needed for ammonium-mediated root-growth inhibition. Confers sensitivity to the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog), and to polar auxin transport inhibitors such as N-1-naphthylphthalamic acid (NPA) and 2,3,5-triiodobenzoic acid (TIBA).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB2|LAX1_ARATH Auxin transporter-like protein 1 OS=Arabidopsis thaliana GN=LAX1 PE=1 SV=1

 Score =  560 bits (1442), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 280/344 (81%), Positives = 297/344 (86%), Gaps = 8/344 (2%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEE--GREDEQQQQHSMLSMKSFLWHGGSAWDAWFS 58
           M  +KQAEE+IV +  E E  G   E+    ED      +  SMKSFLWHGGSAWDAWFS
Sbjct: 1   MSGEKQAEESIVVS-GEDEVAGRKVEDSAAEEDIDGNGGNGFSMKSFLWHGGSAWDAWFS 59

Query: 59  CASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEK-ENV 117
           CASNQVAQVLLTLPYSFSQ+GMLSGILLQIFYG +GSWTAYLISVLYVEYR+R EK E  
Sbjct: 60  CASNQVAQVLLTLPYSFSQLGMLSGILLQIFYGLMGSWTAYLISVLYVEYRARMEKQEAK 119

Query: 118 SFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTW 177
           SFKNHVIQWFEVLDGLLGPYWKA GLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTW
Sbjct: 120 SFKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTW 179

Query: 178 TYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLV 237
           TYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIA+ +HGQ EG +H+ PTKLV
Sbjct: 180 TYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASFLHGQAEGVTHSGPTKLV 239

Query: 238 LYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGD 297
           LYFTGATNILYTFGGHAVTVEIMHAMWKP+KFK IYL ATLYVFTLT+PSA+AVYW+FGD
Sbjct: 240 LYFTGATNILYTFGGHAVTVEIMHAMWKPRKFKSIYLMATLYVFTLTLPSASAVYWAFGD 299

Query: 298 QLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           QLLNHSNAFSLLPK R+RD AVILMLIH    QF   GF   PL
Sbjct: 300 QLLNHSNAFSLLPKTRFRDTAVILMLIH----QFITFGFACTPL 339

Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1 OS=Medicago truncatula GN=LAX1 PE=2 SV=1

 Score =  548 bits (1411), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/341 (78%), Positives = 292/341 (85%), Gaps = 9/341 (2%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           ML +KQ EE ++S+ +ET      +EE +             K+FLWHGGS +DAWFSCA
Sbjct: 1   MLSEKQGEETMMSSLNETIELNEEREEEKGASPGS-----GFKNFLWHGGSVYDAWFSCA 55

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQ+GM+SGI+ Q+FYG +GSWTAYLIS+LYVEYRSRKEKENVSFK
Sbjct: 56  SNQVAQVLLTLPYSFSQLGMISGIIFQVFYGLMGSWTAYLISILYVEYRSRKEKENVSFK 115

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           NHVIQWFEVL+GLLGPYWKA+GLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYI
Sbjct: 116 NHVIQWFEVLEGLLGPYWKAIGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYI 175

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWY+TIAA+VHGQVE   H+ P K+V YF
Sbjct: 176 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYMTIAAIVHGQVENVVHSGPKKMVWYF 235

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFK IY FATLYVFTLT+PSA AVYW+FGDQLL
Sbjct: 236 TGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYFFATLYVFTLTLPSAIAVYWAFGDQLL 295

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           +HSNAFSLLP+N WRDA VILMLIH    QF   GF   PL
Sbjct: 296 DHSNAFSLLPRNAWRDAGVILMLIH----QFITFGFACTPL 332

Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex (By similarity). May be involved in lateral roots and nodules formation.

Medicago truncatula (taxid: 3880)

>sp|Q8L883|LAX5_MEDTR Auxin transporter-like protein 5 OS=Medicago truncatula GN=LAX5 PE=2 SV=1

 Score =  534 bits (1375), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/341 (76%), Positives = 286/341 (83%), Gaps = 14/341 (4%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           M   K AE  IV N+ E E EG   ++ +            + +FLWHGGSA+DAWFSCA
Sbjct: 3   MANDKVAETVIVGNYVEMESEGKPPQDIKSK----------LSNFLWHGGSAYDAWFSCA 52

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQ+GMLSGIL Q+FYG LGSWTAYLIS+LYVEYR+RKE+E V+F+
Sbjct: 53  SNQVAQVLLTLPYSFSQLGMLSGILFQLFYGILGSWTAYLISILYVEYRTRKEREKVNFR 112

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           +HVIQWFEVLDGLLG +W+ VGL FNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYI
Sbjct: 113 SHVIQWFEVLDGLLGKHWRNVGLGFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYI 172

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYRIWSFLGL MTTYTAWYLTIAAV+HGQVEG  H+ P K++LYF
Sbjct: 173 FGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLTIAAVLHGQVEGVKHSGPNKIILYF 232

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFK IYL ATLYV TLTIPSATAVYW+FGD LL
Sbjct: 233 TGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATLYVLTLTIPSATAVYWAFGDMLL 292

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           NHSNAF+LLPK+ +RD AVILMLIH    QF   GF   PL
Sbjct: 293 NHSNAFALLPKSPFRDMAVILMLIH----QFITFGFACTPL 329

Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex (By similarity). May be involved in lateral roots and nodules formation.

Medicago truncatula (taxid: 3880)

>sp|Q9S836|LAX2_ARATH Auxin transporter-like protein 2 OS=Arabidopsis thaliana GN=LAX2 PE=2 SV=1

 Score =  530 bits (1366), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/346 (75%), Positives = 289/346 (83%), Gaps = 18/346 (5%)

Query: 4   QKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCASNQ 63
           +K AE  +V N+ E E +G   +   +           +    WHGGSA+DAWFSCASNQ
Sbjct: 5   EKAAETVVVGNYVEMEKDGKALDIKSK-----------LSDMFWHGGSAYDAWFSCASNQ 53

Query: 64  VAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHV 123
           VAQVLLTLPYSFSQ+GMLSGIL Q+FYG LGSWTAYLIS+LYVEYR+RKE+E V+F+NHV
Sbjct: 54  VAQVLLTLPYSFSQLGMLSGILFQLFYGILGSWTAYLISILYVEYRTRKEREKVNFRNHV 113

Query: 124 IQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIFGA 183
           IQWFEVLDGLLG +W+ VGLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYIFGA
Sbjct: 114 IQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGA 173

Query: 184 CCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGA 243
           CCATTVFIPSFHNYRIWSFLGL MTTYTAWYLTIA+++HGQVEG  H+ P+KLVLYFTGA
Sbjct: 174 CCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASILHGQVEGVKHSGPSKLVLYFTGA 233

Query: 244 TNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHS 303
           TNILYTFGGHAVTVEIMHAMWKPQKFK IYLFATLYV TLT+PSA+AVYW+FGD LLNHS
Sbjct: 234 TNILYTFGGHAVTVEIMHAMWKPQKFKSIYLFATLYVLTLTLPSASAVYWAFGDLLLNHS 293

Query: 304 NAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLL---EQLI 346
           NAF+LLPKN +RD AV+LMLIH    QF   GF   PL    E+LI
Sbjct: 294 NAFALLPKNLYRDFAVVLMLIH----QFITFGFACTPLYFVWEKLI 335

Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA25|LAX3_ARATH Auxin transporter-like protein 3 OS=Arabidopsis thaliana GN=LAX3 PE=2 SV=1

 Score =  516 bits (1329), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 244/340 (71%), Positives = 279/340 (82%), Gaps = 9/340 (2%)

Query: 2   LPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCAS 61
           +  ++ E  +  N+ E E     +EE      ++  +   + +F WHGGS +DAWFSCAS
Sbjct: 1   MAAEKIETVVAGNYLEME-----REEENISGNKKSSTKTKLSNFFWHGGSVYDAWFSCAS 55

Query: 62  NQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKN 121
           NQVAQVLLTLPYSFSQ+GM+SGIL Q+FYG +GSWTAYLISVLYVEYR+RKE+E   F+N
Sbjct: 56  NQVAQVLLTLPYSFSQLGMMSGILFQLFYGLMGSWTAYLISVLYVEYRTRKEREKFDFRN 115

Query: 122 HVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIF 181
           HVIQWFEVLDGLLG +W+ +GL FNCTFLLFGSVIQLIACASNIYYIND+LDKRTWTYIF
Sbjct: 116 HVIQWFEVLDGLLGKHWRNLGLIFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYIF 175

Query: 182 GACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFT 241
           GACCATTVFIPSFHNYRIWSFLGL MTTYT+WYLTIA+++HGQ E   H+ PT +VLYFT
Sbjct: 176 GACCATTVFIPSFHNYRIWSFLGLAMTTYTSWYLTIASLLHGQAEDVKHSGPTTMVLYFT 235

Query: 242 GATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLN 301
           GATNILYTFGGHAVTVEIMHAMWKPQKFK IYL AT+YV TLT+PSA+AVYW+FGD+LL 
Sbjct: 236 GATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATIYVLTLTLPSASAVYWAFGDKLLT 295

Query: 302 HSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           HSNA SLLPK  +RD AVILMLIH    QF   GF   PL
Sbjct: 296 HSNALSLLPKTGFRDTAVILMLIH----QFITFGFASTPL 331

Carrier protein involved in proton-driven auxin influx. Mediates the formation of auxin gradient from developing leaves (site of auxin biosynthesis) to tips by contributing to the loading of auxin in vascular tissues and facilitating acropetal (base to tip) auxin transport within inner tissues of the root apex, and basipetal (tip to base) auxin transport within outer tissues of the root apex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
126217792	480	auxin influx transport protein [Casuarin	0.953	0.689	0.865	1e-171
56562199	483	putative auxin influx carrier protein [P	0.968	0.695	0.859	1e-171
255581063	488	amino acid transporter, putative [Ricinu	0.959	0.682	0.865	1e-170
356568064	491	PREDICTED: auxin transporter-like protei	0.968	0.684	0.859	1e-170
356520998	494	PREDICTED: auxin transporter-like protei	0.968	0.680	0.856	1e-170
449439906	478	PREDICTED: auxin transporter-like protei	0.951	0.690	0.847	1e-168
449529890	478	PREDICTED: auxin transporter-like protei	0.951	0.690	0.847	1e-168
357505879	484	Auxin transporter-like protein [Medicago	0.953	0.683	0.851	1e-167
356504042	483	PREDICTED: auxin transporter-like protei	0.956	0.687	0.841	1e-167
255571873	472	amino acid transporter, putative [Ricinu	0.956	0.703	0.847	1e-166

>gi|126217792|gb|ABN81349.1| auxin influx transport protein [Casuarina glauca] gi|126217794|gb|ABN81350.1| auxin influx transport protein [Casuarina glauca]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 295/341 (86%), Positives = 311/341 (91%), Gaps = 10/341 (2%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           MLPQKQAEEAIVSNFSETEHEG      ++ EQ + HS+ S+K+FLWHGGS WDAWFSCA
Sbjct: 1   MLPQKQAEEAIVSNFSETEHEG------KDQEQPEDHSIFSVKTFLWHGGSVWDAWFSCA 54

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQ+GMLSGILLQIFYG LGSWTAYLISVLYVEYRSRKEKENVSFK
Sbjct: 55  SNQVAQVLLTLPYSFSQLGMLSGILLQIFYGLLGSWTAYLISVLYVEYRSRKEKENVSFK 114

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYI
Sbjct: 115 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYI 174

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWY+ IAA++HGQVE   HTAP+KLVLYF
Sbjct: 175 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYMAIAALLHGQVENVQHTAPSKLVLYF 234

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLTIPSA +VYW+FGD+LL
Sbjct: 235 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPSAASVYWAFGDELL 294

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           NHSNAFSLLP+N +RDAAVILMLIH    QF   GF   PL
Sbjct: 295 NHSNAFSLLPRNGFRDAAVILMLIH----QFITFGFACTPL 331

Source: Casuarina glauca

Species: Casuarina glauca

Genus: Casuarina

Family: Casuarinaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56562199|emb|CAI05895.1| putative auxin influx carrier protein [Prunus avium]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/341 (85%), Positives = 315/341 (92%), Gaps = 5/341 (1%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           ML QKQAEEAIVSNFSE  H+  GKE+  +D++++  S+ ++K+FLWHGGS WDAWFSCA
Sbjct: 1   MLAQKQAEEAIVSNFSEA-HDHEGKEDHHQDKEEENTSLFNVKNFLWHGGSVWDAWFSCA 59

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQ+G+LSGILLQIFYG +GSWTAYLISVLY+EYRSRKEKENV+FK
Sbjct: 60  SNQVAQVLLTLPYSFSQLGLLSGILLQIFYGIVGSWTAYLISVLYIEYRSRKEKENVNFK 119

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYI
Sbjct: 120 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYI 179

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQ EG +HTAPTKLVLYF
Sbjct: 180 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQKEGVTHTAPTKLVLYF 239

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFAT+YVFTLTIPSAT+VYW+FGD+LL
Sbjct: 240 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATVYVFTLTIPSATSVYWAFGDELL 299

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           NH+NAFSLLPKN WRDAAVILMLIH    QF   GF   PL
Sbjct: 300 NHANAFSLLPKNAWRDAAVILMLIH----QFITFGFACTPL 336

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581063|ref|XP_002531347.1| amino acid transporter, putative [Ricinus communis] gi|223529045|gb|EEF31031.1| amino acid transporter, putative [Ricinus communis]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 295/341 (86%), Positives = 311/341 (91%), Gaps = 8/341 (2%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           MLPQKQAEEAIVSNFSETEHEG  KEEGRE E+Q  HSM ++KS LWHGGSAWDAWFSCA
Sbjct: 1   MLPQKQAEEAIVSNFSETEHEG--KEEGREAEEQ--HSMFNVKSILWHGGSAWDAWFSCA 56

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQ+GMLSGIL QIFYG +GSWTAYLISVLY+EYRSRKEKENV+FK
Sbjct: 57  SNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLVGSWTAYLISVLYIEYRSRKEKENVNFK 116

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           NHVIQWFEVLDGLLGPYWKA GLAFNCTFLLFGSVIQLI CASNIYYIND LDKRTWTYI
Sbjct: 117 NHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIGCASNIYYINDHLDKRTWTYI 176

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLT AA+V GQVEG +HT   +LVLYF
Sbjct: 177 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTAAALVQGQVEGVTHTGAKELVLYF 236

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL AT+YVFTLT+PSATA+YW+FGD+LL
Sbjct: 237 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATIYVFTLTLPSATAMYWAFGDKLL 296

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           NHSNAFSLLPKN +RDAAVILMLIH    QF   GF   PL
Sbjct: 297 NHSNAFSLLPKNGFRDAAVILMLIH----QFITFGFACTPL 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568064|ref|XP_003552233.1| PREDICTED: auxin transporter-like protein 2-like [Glycine max]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 294/342 (85%), Positives = 311/342 (90%), Gaps = 6/342 (1%)

Query: 1   MLPQKQAEEAIVS-NFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSC 59
           MLPQ QAEEAIV+ + +ETE E G +EE +E  QQQ HSM ++KSFLWHGGS WDAWFSC
Sbjct: 1   MLPQNQAEEAIVTTSLNETESEVGMREEEKE-LQQQDHSMFNIKSFLWHGGSVWDAWFSC 59

Query: 60  ASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSF 119
           ASNQVAQVLLTLPYSFSQ+GMLSGILLQIFYG LGSWTAYLISVLY+EYR+RKEKENVSF
Sbjct: 60  ASNQVAQVLLTLPYSFSQLGMLSGILLQIFYGILGSWTAYLISVLYMEYRTRKEKENVSF 119

Query: 120 KNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTY 179
           KNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTY
Sbjct: 120 KNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTY 179

Query: 180 IFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLY 239
           IFGACCAT+VFIPSFHNYRIWSFLGLGMTTYTAWYL IAA++HGQ E  +HT PTKLVLY
Sbjct: 180 IFGACCATSVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALIHGQAENVTHTGPTKLVLY 239

Query: 240 FTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQL 299
           FTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLTIPSA AVYW+FGD+L
Sbjct: 240 FTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTIPSAAAVYWAFGDEL 299

Query: 300 LNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           LNHSNAFSLLPKNR+RDAAVILMLIH    QF   GF   PL
Sbjct: 300 LNHSNAFSLLPKNRFRDAAVILMLIH----QFITFGFASTPL 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520998|ref|XP_003529145.1| PREDICTED: auxin transporter-like protein 2-like [Glycine max]

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 293/342 (85%), Positives = 310/342 (90%), Gaps = 6/342 (1%)

Query: 1   MLPQKQAEEAIVS-NFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSC 59
           MLP  QAEEAIV+ + +ETE E G +EE +E  QQQ HSM ++KSFLWHGGS WDAWFSC
Sbjct: 4   MLPPNQAEEAIVTTSLNETESEVGMREEEKE-LQQQDHSMFNIKSFLWHGGSVWDAWFSC 62

Query: 60  ASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSF 119
           ASNQVAQVLLTLPYSFSQ+GMLSGILLQIFYG LGSWTAYLISVLY+EYR+RKEKENVSF
Sbjct: 63  ASNQVAQVLLTLPYSFSQLGMLSGILLQIFYGILGSWTAYLISVLYMEYRTRKEKENVSF 122

Query: 120 KNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTY 179
           KNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTY
Sbjct: 123 KNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTY 182

Query: 180 IFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLY 239
           IFGACCAT+VFIPSFHNYRIWSFLGLGMTTYTAWYL IAA++HGQ E  +HT PTKLVLY
Sbjct: 183 IFGACCATSVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALIHGQAENVTHTGPTKLVLY 242

Query: 240 FTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQL 299
           FTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLTIPSA AVYW+FGD+L
Sbjct: 243 FTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTIPSAAAVYWAFGDEL 302

Query: 300 LNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           LNHSNAFSLLPKNR+RDAAVILMLIH    QF   GF   PL
Sbjct: 303 LNHSNAFSLLPKNRFRDAAVILMLIH----QFITFGFASTPL 340

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439906|ref|XP_004137726.1| PREDICTED: auxin transporter-like protein 2-like [Cucumis sativus]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/341 (84%), Positives = 309/341 (90%), Gaps = 11/341 (3%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           MLPQKQAEEAIV N +ETEHEG  KEE +E +     S+ S+K+ LWHGGSAWDAWFSCA
Sbjct: 1   MLPQKQAEEAIVPNVNETEHEG--KEEDKESQ-----SIFSVKNILWHGGSAWDAWFSCA 53

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQ+GMLSGIL QIFYG +GSWTAY+ISVLY+EYRSRKEKENVSFK
Sbjct: 54  SNQVAQVLLTLPYSFSQLGMLSGILFQIFYGIMGSWTAYIISVLYIEYRSRKEKENVSFK 113

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           NHVIQWFEVLDGLLGPYWKA+GLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYI
Sbjct: 114 NHVIQWFEVLDGLLGPYWKAIGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYI 173

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYR+WSFLGLGMTTYTAWY+ IAA+VHGQVEG  H+ P KLVLYF
Sbjct: 174 FGACCATTVFIPSFHNYRLWSFLGLGMTTYTAWYMAIAALVHGQVEGVQHSGPKKLVLYF 233

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLT+PSATAVYW+FGD+LL
Sbjct: 234 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTLPSATAVYWAFGDELL 293

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           NHSNAFSLLPK+R+RDAAVILMLIH    QF   GF   PL
Sbjct: 294 NHSNAFSLLPKSRFRDAAVILMLIH----QFITFGFACTPL 330

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529890|ref|XP_004171931.1| PREDICTED: auxin transporter-like protein 2-like [Cucumis sativus]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/341 (84%), Positives = 309/341 (90%), Gaps = 11/341 (3%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           MLPQKQAEEAIV N +ETEHEG  KEE +E +     S+ S+K+ LWHGGSAWDAWFSCA
Sbjct: 1   MLPQKQAEEAIVPNVNETEHEG--KEEDKESQ-----SIFSVKNILWHGGSAWDAWFSCA 53

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQ+GMLSGIL QIFYG +GSWTAY+ISVLY+EYRSRKEKENVSFK
Sbjct: 54  SNQVAQVLLTLPYSFSQLGMLSGILFQIFYGIMGSWTAYIISVLYIEYRSRKEKENVSFK 113

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           NHVIQWFEVLDGLLGPYWKA+GLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYI
Sbjct: 114 NHVIQWFEVLDGLLGPYWKAIGLAFNCTFLLFGSVIQLIACASNIYYINDHLDKRTWTYI 173

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYR+WSFLGLGMTTYTAWY+ IAA+VHGQVEG  H+ P KLVLYF
Sbjct: 174 FGACCATTVFIPSFHNYRLWSFLGLGMTTYTAWYMAIAALVHGQVEGVQHSGPKKLVLYF 233

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLT+PSATAVYW+FGD+LL
Sbjct: 234 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTLPSATAVYWAFGDELL 293

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           NHSNAFSLLPK+R+RDAAVILMLIH    QF   GF   PL
Sbjct: 294 NHSNAFSLLPKSRFRDAAVILMLIH----QFITFGFACTPL 330

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505879|ref|XP_003623228.1| Auxin transporter-like protein [Medicago truncatula] gi|75262336|sp|Q9FEL7.1|LAX2_MEDTR RecName: Full=Auxin transporter-like protein 2; AltName: Full=AUX1-like protein 2; AltName: Full=MtLAX2 gi|10800920|emb|CAC12996.1| putative AUX1-like permease [Medicago truncatula] gi|21586462|gb|AAM55304.1| auxin influx carrier protein [Medicago truncatula] gi|355498243|gb|AES79446.1| Auxin transporter-like protein [Medicago truncatula]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 292/343 (85%), Positives = 308/343 (89%), Gaps = 12/343 (3%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGG--GKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFS 58
           MLPQKQ EEAIVS+F+ET+ + G  G+EE  ED     HS  S+K+FLWHGGS WDAWFS
Sbjct: 1   MLPQKQGEEAIVSSFNETDQQEGVVGREEEVED-----HS-FSVKNFLWHGGSVWDAWFS 54

Query: 59  CASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVS 118
           CASNQVAQVLLTLPYSFSQ+GMLSGILLQ+FYG LGSWTAYLISVLYVEYRSRKEKENV+
Sbjct: 55  CASNQVAQVLLTLPYSFSQLGMLSGILLQVFYGILGSWTAYLISVLYVEYRSRKEKENVN 114

Query: 119 FKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWT 178
           FKNHVIQWFEVLDGLLGPYWKA+GLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWT
Sbjct: 115 FKNHVIQWFEVLDGLLGPYWKALGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWT 174

Query: 179 YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVL 238
           YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIA++VHGQ E  +HT P KLVL
Sbjct: 175 YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASIVHGQAENVTHTGPKKLVL 234

Query: 239 YFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQ 298
           YFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLTIPSATAVYW+FGD+
Sbjct: 235 YFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYVFTLTIPSATAVYWAFGDE 294

Query: 299 LLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           LLNHSNAFSLLPKN WRD AVILMLIH    QF   GF   PL
Sbjct: 295 LLNHSNAFSLLPKNGWRDGAVILMLIH----QFITFGFACTPL 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504042|ref|XP_003520808.1| PREDICTED: auxin transporter-like protein 4-like [Glycine max]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/341 (84%), Positives = 306/341 (89%), Gaps = 9/341 (2%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           ML QKQAEEAIV+N  ETEHE       RE+E++Q  SM S+KS LWHGGS WDAWFSCA
Sbjct: 1   MLSQKQAEEAIVTN--ETEHE---VSSTREEEKEQDQSMFSLKSILWHGGSVWDAWFSCA 55

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQ+GMLSGI+ Q+FYG +GSWTAYLISVLY+EYR+RKEKENVSFK
Sbjct: 56  SNQVAQVLLTLPYSFSQLGMLSGIIFQVFYGIVGSWTAYLISVLYIEYRTRKEKENVSFK 115

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           NHVIQWFEVLDGLLGPYWKA+GLAFNCTFLLFGSVIQLIACASNIYYIND+LDKRTWTYI
Sbjct: 116 NHVIQWFEVLDGLLGPYWKALGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYI 175

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYL IAA++HGQVE  +HT P+KLVLYF
Sbjct: 176 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAAILHGQVENVTHTGPSKLVLYF 235

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLTIPSA AVYW+FGD LL
Sbjct: 236 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTIPSAVAVYWAFGDMLL 295

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
           NHSNAFSLLPKN +RDAAVILMLIH    QF   GF   PL
Sbjct: 296 NHSNAFSLLPKNGFRDAAVILMLIH----QFITFGFACTPL 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571873|ref|XP_002526879.1| amino acid transporter, putative [Ricinus communis] gi|223533778|gb|EEF35510.1| amino acid transporter, putative [Ricinus communis]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 289/341 (84%), Positives = 305/341 (89%), Gaps = 9/341 (2%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           ML QKQAEE +VS F+ET+  G  KEE  ED     HS+ S+KS LWHGGS +DAWFSCA
Sbjct: 1   MLSQKQAEEEMVSRFNETDEHGTEKEEEGED-----HSIFSVKSLLWHGGSVYDAWFSCA 55

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQMGMLSGI+LQ+FYG LGSWTAYLISVLY+EYRSRKEKENV+FK
Sbjct: 56  SNQVAQVLLTLPYSFSQMGMLSGIILQVFYGILGSWTAYLISVLYIEYRSRKEKENVNFK 115

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           NHVIQWFEVLDGLLGP WKAVGLAFNCTFLLFGSVIQLIACASNIYYIND+LDKRTWTYI
Sbjct: 116 NHVIQWFEVLDGLLGPTWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDKLDKRTWTYI 175

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAA+VHGQVEG +H+ P KLVLYF
Sbjct: 176 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAIVHGQVEGVTHSGPKKLVLYF 235

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYVFTLTIPSATAVYW+FGDQLL
Sbjct: 236 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLLATLYVFTLTIPSATAVYWAFGDQLL 295

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
            HSNAFSLLP + WRDAAVILMLIH    QF   GF   PL
Sbjct: 296 THSNAFSLLPHSGWRDAAVILMLIH----QFITFGFACTPL 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2150089	488	LAX1 "AT5G01240" [Arabidopsis	0.971	0.690	0.801	1.7e-146
TAIR|locus:2005496	485	AUX1 "AT2G38120" [Arabidopsis	0.855	0.612	0.870	1.2e-145
TAIR|locus:2047102	483	LAX2 "AT2G21050" [Arabidopsis	0.853	0.612	0.833	1.2e-138
TAIR|locus:2203226	470	LAX3 "AT1G77690" [Arabidopsis	0.853	0.629	0.796	4.2e-134
TAIR|locus:2199978	451	AT1G08230 [Arabidopsis thalian	0.688	0.529	0.232	7e-06
ASPGD|ASPL0000039744	451	AN2821 [Emericella nidulans (t	0.654	0.503	0.235	1.5e-05
WB|WBGene00022012	465	Y59H11AR.4 [Caenorhabditis ele	0.708	0.529	0.225	3.5e-05
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.766	0.603	0.211	6.9e-05
WB|WBGene00019837	494	R02F2.8 [Caenorhabditis elegan	0.772	0.542	0.217	8.2e-05
WB|WBGene00012529	519	Y32F6A.4 [Caenorhabditis elega	0.755	0.504	0.206	0.00015

TAIR|locus:2150089 LAX1 "AT5G01240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
 Identities = 275/343 (80%), Positives = 291/343 (84%)

Query:     1 MLPQKQAEEAIV-SNFSXXXXXXXXXXXXXXXXXXXXHSMLSMKSFLWHGGSAWDAWFSC 59
             M  +KQAEE+IV S                        +  SMKSFLWHGGSAWDAWFSC
Sbjct:     1 MSGEKQAEESIVVSGEDEVAGRKVEDSAAEEDIDGNGGNGFSMKSFLWHGGSAWDAWFSC 60

Query:    60 ASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENV-S 118
             ASNQVAQVLLTLPYSFSQ+GMLSGILLQIFYG +GSWTAYLISVLYVEYR+R EK+   S
Sbjct:    61 ASNQVAQVLLTLPYSFSQLGMLSGILLQIFYGLMGSWTAYLISVLYVEYRARMEKQEAKS 120

Query:   119 FKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWT 178
             FKNHVIQWFEVLDGLLGPYWKA GLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWT
Sbjct:   121 FKNHVIQWFEVLDGLLGPYWKAAGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWT 180

Query:   179 YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVL 238
             YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIA+ +HGQ EG +H+ PTKLVL
Sbjct:   181 YIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASFLHGQAEGVTHSGPTKLVL 240

Query:   239 YFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQ 298
             YFTGATNILYTFGGHAVTVEIMHAMWKP+KFK IYL ATLYVFTLT+PSA+AVYW+FGDQ
Sbjct:   241 YFTGATNILYTFGGHAVTVEIMHAMWKPRKFKSIYLMATLYVFTLTLPSASAVYWAFGDQ 300

Query:   299 LLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
             LLNHSNAFSLLPK R+RD AVILMLIHQ     TF GF   PL
Sbjct:   301 LLNHSNAFSLLPKTRFRDTAVILMLIHQF---ITF-GFACTPL 339

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0048829 "root cap development" evidence=IGI

GO:0010328 "auxin influx transmembrane transporter activity" evidence=IDA

TAIR|locus:2005496 AUX1 "AT2G38120" [Arabidopsis thaliana (taxid:3702)]

 Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
 Identities = 262/301 (87%), Positives = 276/301 (91%)

Query:    41 SMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYL 100
             ++ +FLWHGGS WDAWFSCASNQVAQVLLTLPYSFSQ+GMLSGI+LQIFYG LGSWTAYL
Sbjct:    37 NLSNFLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIVLQIFYGLLGSWTAYL 96

Query:   101 ISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIA 160
             ISVLYVEYR+RKEKE  SFKNHVIQWFEVLDGLLG YWKA+GLAFNCTFLLFGSVIQLIA
Sbjct:    97 ISVLYVEYRARKEKEGKSFKNHVIQWFEVLDGLLGSYWKALGLAFNCTFLLFGSVIQLIA 156

Query:   161 CASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAV 220
             CASNIYYIND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYL IA++
Sbjct:   157 CASNIYYINDHLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIASI 216

Query:   221 VHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYV 280
             +HGQ EG  H+ PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYV
Sbjct:   217 IHGQAEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLMATLYV 276

Query:   281 FTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLP 340
             FTLTIPSA AVYW+FGD LL+HSNAFSL+PKN WRDAAVILMLIHQ     TF GF   P
Sbjct:   277 FTLTIPSAAAVYWAFGDALLDHSNAFSLMPKNAWRDAAVILMLIHQF---ITF-GFACTP 332

Query:   341 L 341
             L
Sbjct:   333 L 333

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=NAS

GO:0009733 "response to auxin stimulus" evidence=NAS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009986 "cell surface" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0010328 "auxin influx transmembrane transporter activity" evidence=IDA

GO:0009926 "auxin polar transport" evidence=RCA;TAS

GO:0001736 "establishment of planar polarity" evidence=IGI

GO:0048765 "root hair cell differentiation" evidence=IGI;RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010311 "lateral root formation" evidence=IGI;IMP

GO:0010011 "auxin binding" evidence=IDA

GO:0048829 "root cap development" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006949 "syncytium formation" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009958 "positive gravitropism" evidence=IMP

TAIR|locus:2047102 LAX2 "AT2G21050" [Arabidopsis thaliana (taxid:3702)]

 Score = 1357 (482.7 bits), Expect = 1.2e-138, P = 1.2e-138
 Identities = 250/300 (83%), Positives = 272/300 (90%)

Query:    42 MKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLI 101
             +    WHGGSA+DAWFSCASNQVAQVLLTLPYSFSQ+GMLSGIL Q+FYG LGSWTAYLI
Sbjct:    32 LSDMFWHGGSAYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGILGSWTAYLI 91

Query:   102 SVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIAC 161
             S+LYVEYR+RKE+E V+F+NHVIQWFEVLDGLLG +W+ VGLAFNCTFLLFGSVIQLIAC
Sbjct:    92 SILYVEYRTRKEREKVNFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIAC 151

Query:   162 ASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVV 221
             ASNIYYIND LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL MTTYTAWYLTIA+++
Sbjct:   152 ASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYLTIASIL 211

Query:   222 HGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVF 281
             HGQVEG  H+ P+KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IYLFATLYV 
Sbjct:   212 HGQVEGVKHSGPSKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLFATLYVL 271

Query:   282 TLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
             TLT+PSA+AVYW+FGD LLNHSNAF+LLPKN +RD AV+LMLIHQ     TF GF   PL
Sbjct:   272 TLTLPSASAVYWAFGDLLLNHSNAFALLPKNLYRDFAVVLMLIHQF---ITF-GFACTPL 327

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

GO:0048829 "root cap development" evidence=IGI

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

TAIR|locus:2203226 LAX3 "AT1G77690" [Arabidopsis thaliana (taxid:3702)]

 Score = 1314 (467.6 bits), Expect = 4.2e-134, P = 4.2e-134
 Identities = 239/300 (79%), Positives = 265/300 (88%)

Query:    42 MKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLI 101
             + +F WHGGS +DAWFSCASNQVAQVLLTLPYSFSQ+GM+SGIL Q+FYG +GSWTAYLI
Sbjct:    36 LSNFFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMMSGILFQLFYGLMGSWTAYLI 95

Query:   102 SVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIAC 161
             SVLYVEYR+RKE+E   F+NHVIQWFEVLDGLLG +W+ +GL FNCTFLLFGSVIQLIAC
Sbjct:    96 SVLYVEYRTRKEREKFDFRNHVIQWFEVLDGLLGKHWRNLGLIFNCTFLLFGSVIQLIAC 155

Query:   162 ASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVV 221
             ASNIYYIND+LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL MTTYT+WYLTIA+++
Sbjct:   156 ASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLAMTTYTSWYLTIASLL 215

Query:   222 HGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVF 281
             HGQ E   H+ PT +VLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK IYL AT+YV 
Sbjct:   216 HGQAEDVKHSGPTTMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKAIYLLATIYVL 275

Query:   282 TLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPL 341
             TLT+PSA+AVYW+FGD+LL HSNA SLLPK  +RD AVILMLIHQ     TF GF   PL
Sbjct:   276 TLTLPSASAVYWAFGDKLLTHSNALSLLPKTGFRDTAVILMLIHQF---ITF-GFASTPL 331

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;IDA

GO:0009926 "auxin polar transport" evidence=IDA

GO:0010311 "lateral root formation" evidence=IGI

GO:0010328 "auxin influx transmembrane transporter activity" evidence=IDA

GO:0048829 "root cap development" evidence=IGI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2199978 AT1G08230 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 61/262 (23%), Positives = 107/262 (40%)

Query:    50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYR 109
             G+ W   F   ++ VA  LL+LPY+F  +G  +GI   +  G   ++ +Y +  L +E+ 
Sbjct:    30 GTWWHCGFHLTTSIVAPALLSLPYAFKFLGWAAGISCLVG-GAAVTFYSYTLLSLTLEHH 88

Query:   110 SRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQ--LIA--CASNI 165
             +       S  N  +++ ++   +L P W    +      + +G VI   L+   C   +
Sbjct:    89 A-------SLGNRYLRFRDMAHHILSPKWGRYYVGPIQMAVCYGVVIANALLGGQCLKAM 141

Query:   166 YYI---NDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVH 222
             Y +   N  +    +  IFG         PSFH+ R  + L L +    +     A++  
Sbjct:   142 YLVVQPNGEMKLFEFVIIFGCLLLVLAQFPSFHSLRYINSLSLLLCLLYSASAAAASIYI 201

Query:   223 GQVEGA---SHTA---PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFA 276
             G+   A    +T    P   V     A  I+ T  G+ +  EI   +  P K K +    
Sbjct:   202 GKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQATISAPVKGKMMKGLC 261

Query:   277 TLYVFTLTIPSATAV--YWSFG 296
               Y+  +      A+  YW+FG
Sbjct:   262 MCYLVVIMTFFTVAITGYWAFG 283

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IDA

GO:0015812 "gamma-aminobutyric acid transport" evidence=IGI

ASPGD|ASPL0000039744 AN2821 [Emericella nidulans (taxid:162425)]

 Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 59/251 (23%), Positives = 102/251 (40%)

Query:    53 WDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRK 112
             W       +  V+  +L+LP + +Q+G+   ++L I  G L ++T Y+I   +  Y    
Sbjct:    51 WQTGMFMIAESVSLGVLSLPATLAQLGLAPALVLIIGLGLLATYTGYVIGQFHQRYP--- 107

Query:   113 EKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRL 172
                      HV    +  D LLG + + +   F    LLF   I      +    +N   
Sbjct:   108 ---------HVQNLADAGDVLLGAFGREL---FGIGQLLFSIFIMGSHILTFSVMMNTIT 155

Query:   173 DKRTWTYIF---GACCATTVFIP-SFHNYRIWSFLGLGMTTYTAWYLTIAAV-VHGQVEG 227
             +  T T +F   G        +P +  N    S +    + +TA  +T+  V V G+   
Sbjct:   156 EHGTCTMVFTTVGFVVCMLGSLPRTMKNMTYISCMSFA-SIFTAVIITMVGVGVQGRAST 214

Query:   228 A-SHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KYIYLFATLYVFTLTI 285
                 T  T L   FT  TNI++ +  H     ++  M +P+ F K +Y+  T  +    I
Sbjct:   215 TLKATVDTDLFHAFTAVTNIVFAYCAHVAFFGLLAEMREPRDFPKALYMLQTFEIIFYVI 274

Query:   286 PSATAVYWSFG 296
              +A  +Y+  G
Sbjct:   275 -AAVVIYYYAG 284

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00022012 Y59H11AR.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 61/270 (22%), Positives = 114/270 (42%)

Query:    68 LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127
             L+ LP +   +G + G +  I    +  +TA L+   ++  ++R  + +   +N    + 
Sbjct:    23 LVALPSAMQSLGFMGGTITLIVMCLITYYTATLLGNNWIIMKTRWSEYSEHCRN---PYP 79

Query:   128 EVLDGLLGPYWKAVGLAFN-CT-FLLFG--SVIQLIACASNIYYIND-RLDKRTWTYIFG 182
             E+    LG  W  +G+  N CT F +FG  +V  L+A  +    +N   +     T +  
Sbjct:    80 EMAHKALGT-W--MGMTTNFCTYFTVFGGTAVFSLLAAKTLAEVLNGFGIGATMCTTLIT 136

Query:   183 ACCATTVFIPSFHNYRIWSF-LGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFT 241
                    F+        W   +   ++T TA    +A ++ G    A    P      FT
Sbjct:   137 VGLILWPFVMLKSPAHFWQVSIVATISTVTA----VALILFGYFLDAKGCYPHSSYPDFT 192

Query:   242 --GATN----ILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSF 295
                A+N    I++ +GGH     I+H M  PQ +   +L + + +F L  P +   +W +
Sbjct:   193 PTAASNSLATIIFAYGGHPCIPTIVHDMKTPQHYFRCFLLSYIALFLLYTPVSLFGFWIY 252

Query:   296 GDQLLNHSNAFSLLPKNRWRDAAVILMLIH 325
             GD + +  +  S +  +  R    IL+ +H
Sbjct:   253 GDSVSD--SIISSIQNDSLRRGISILIAVH 280

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 61/289 (21%), Positives = 122/289 (42%)

Query:    56 WFSCASNQVAQV---LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRK 112
             W+S   N  A V   +L+LPY+ S +G   G+ + I    +  +T + +  ++     ++
Sbjct:    34 WYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITFYTLWQMVQMHEMVPGKR 93

Query:   113 EKENVSFKNHVIQWFEVLD-GLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDR 171
                      H     E L   ++ P    V +  +  +++ G   + +    ++   + +
Sbjct:    94 FDRYHELGQHAFG--EKLGLWIVVPQQLIVEVGVDIVYMVTGG--KSLKKIHDLLCTDCK 149

Query:   172 LDKRT-WTYIFGACCATTVFIPSFHNYRIWSFLGLGMT-TYT--AWYLTIAAVVHGQVEG 227
               + T W  IF +       +P+F++  I S     M+ +Y+  AW  ++   VH  V+ 
Sbjct:   150 NIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGVHPNVDY 209

Query:   228 ASHTAPTK-LVLYFTGAT-NILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATLYVFTLT 284
             +S  + T   V  F  A  ++ + + GH V +EI   +   P+K   I ++  + V  + 
Sbjct:   210 SSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAMWKGVVVAYIV 269

Query:   285 I-----PSATAVYWSFGDQLLNHSNAFSLLPKNRWRDA-AVILMLIHQV 327
             +     P A   Y+ FG+ +    N    L K  W  A A   +++H +
Sbjct:   270 VAICYFPVAFVCYYIFGNSV--DDNILMTLEKPIWLIAIANAFVVVHVI 316

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

WB|WBGene00019837 R02F2.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 124 (48.7 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 63/290 (21%), Positives = 123/290 (42%)

Query:    68 LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127
             ++ L Y+ + MG++ G++L         +TA  +   +   ++R  +    +++H  + +
Sbjct:    42 MIALSYALTSMGLIPGLILLSLCSIFSLYTALELCWTWKIMQNRWPE----YRDHCRKPY 97

Query:   128 -EVLDGLLGPYWKAVGLAFN-C-TFLLFGSVIQLIACASNI-----YYINDRLDKRTWTY 179
              E+    +G   ++  +AF  C T + F +V+ L+A A N+     ++ +  +++     
Sbjct:    98 GEMAYRTIGRKMRSF-IAFMICITQIGFATVLVLLA-AKNLSILLHFFFSLDINQCYLIL 155

Query:   180 IFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQ---VEGASHTAPTKL 236
             I G        +PS  ++   +    G +T  A  L +  + H      + A H  P  L
Sbjct:   156 IVGLAVWPATMLPSPMHFWQAALFSAGSST-CAVILVVVGLAHDAPVCAQDAPHEEPNLL 214

Query:   237 VLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFG 296
               +    T  ++ FGGHA    I H M KP  F +  + A ++   L +  A   Y+ +G
Sbjct:   215 KAFMAFGT-FVFAFGGHATLPTIQHDMKKPAHFVHSVVLAIIFCTMLYMCIAVGGYFVYG 273

Query:   297 DQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLI 346
               +   +   SL  K  W    V LM+   V      +    +  +EQL+
Sbjct:   274 STV-GEAIIPSLQIK--WIQQTVNLMIAVHVITTIVIVMSPPIQQVEQLL 320

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00012529 Y32F6A.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
 Identities = 60/291 (20%), Positives = 129/291 (44%)

Query:    68 LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 127
             ++ LP +  Q    +G+++ +    + ++TAY++ + +    S   +    +++H  + +
Sbjct:    73 IVALPTAIIQAEFWTGLIVCVILIGVVTYTAYVLGLSWNILLSTWPE----YRHHCRKPY 128

Query:   128 EVLDG-LLGPYWKA-VGLAFNCTFLLFGSVIQLIACASNIY-----YINDRLDKRTWTYI 180
               + G  +G   +  V +  + T  +  SV+ L+  + NI      +    +       I
Sbjct:   129 PEIGGRAMGKTCQLLVSICIDVTQFMI-SVVYLLLASKNIMNMIIAFSGTHISFCILILI 187

Query:   181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVV--HGQVEGASHTAPTKLVL 238
                C     F+ S  ++  W+ +   MTT  A  L I   +  +G+    +   P +   
Sbjct:   188 VATCLLPLCFLKSPQDFW-WAVVIAMMTTSAAVILIIVGSIIDYGKCAPFAKLPPFRTTN 246

Query:   239 YFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KYIYLFATLYVFTLTIPSATAVYWSFGD 297
              F     +L++ GGH+    I H M +P++F + ++L  T+  F + IP     Y  +GD
Sbjct:   247 LFLSMGTLLFSVGGHSAFPTIQHDMKQPKEFTRSVFLAFTIMAF-MYIPVCIMGYLVYGD 305

Query:   298 QLLNHSNAFSLLPKNR--WRDAAVILML-IHQVQFQFTFIGFTDLPLLEQL 345
              L +     S++P  +  W   A+ +M+ +H +    T + F   PL++++
Sbjct:   306 SLRD-----SIIPSIQTVWIQQAINIMITVHCI-LTLTIV-FN--PLMQEV 347

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5N892	LAX1_ORYSJ	No assigned EC number	0.8057	0.9711	0.6849	yes	no
Q96247	AUX1_ARATH	No assigned EC number	0.8011	0.9567	0.6845	yes	no
Q9FEL7	LAX2_MEDTR	No assigned EC number	0.8513	0.9538	0.6838	N/A	no
Q9FEL6	LAX3_MEDTR	No assigned EC number	0.7352	0.9394	0.7010	N/A	no
Q8L883	LAX5_MEDTR	No assigned EC number	0.7653	0.9423	0.6673	N/A	no
Q8L884	LAX4_MEDTR	No assigned EC number	0.8240	0.9596	0.6908	N/A	no
Q9FEL8	LAX1_MEDTR	No assigned EC number	0.7829	0.9567	0.6931	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
PLN03074	473	PLN03074, PLN03074, auxin influx permease; Provisi	0.0
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	6e-57

>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional

 Score =  641 bits (1655), Expect = 0.0
 Identities = 273/336 (81%), Positives = 290/336 (86%), Gaps = 10/336 (2%)

Query: 1   MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCA 60
           M+  KQAE AIV N+ E E EGGG++E              +KS LWHGGS +DAWFSCA
Sbjct: 1   MMAGKQAETAIVGNYVEMEVEGGGEKEEGGG----GGGKSRLKSLLWHGGSVYDAWFSCA 56

Query: 61  SNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFK 120
           SNQVAQVLLTLPYSFSQ+GMLSGIL QIFYG LGSWTAYLISVLYVEYR+RKE+E V FK
Sbjct: 57  SNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFK 116

Query: 121 NHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYI 180
           NHVIQWFEVLDGLLGPYWK VGLAFNCTFLLFGSVIQLIACASNIYYIND LDKRTWTYI
Sbjct: 117 NHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYI 176

Query: 181 FGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF 240
           FGACCATTVFIPSFHNYRIWSFLGL MTTYTAWY+TIAA+ HGQVEG  H+ PTKLVLYF
Sbjct: 177 FGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYF 236

Query: 241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLL 300
           TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYL ATLYV TLT+PSA AVYW+FGD+LL
Sbjct: 237 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELL 296

Query: 301 NHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGF 336
            HSNAFSLLP++ WRDAAVILMLIHQ      FI F
Sbjct: 297 THSNAFSLLPRSGWRDAAVILMLIHQ------FITF 326

Length = 473

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  189 bits (483), Expect = 6e-57
 Identities = 74/294 (25%), Positives = 117/294 (39%), Gaps = 23/294 (7%)

Query: 48  HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVE 107
              SAW A F+     +   +L+LPY+F Q+G + G++L +  G +  +T +L+      
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 108 YRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY 167
               K K   S+ +           L GP  K + L      L    +  LI    N+  
Sbjct: 61  VDKVKGKRRKSYGDLG-------YRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPA 113

Query: 168 IND------RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTY-TAWYLTIAAV 220
           I D       +    +  IFG       FIP+     I S +    + Y     L++A +
Sbjct: 114 IFDSFFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAEL 173

Query: 221 VHGQVEGASHTAP---TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF---KYIYL 274
                +G          KL   F     I++ F GHAV + I + M  P KF     + L
Sbjct: 174 GVLTAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLL 233

Query: 275 FATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRW-RDAAVILMLIHQV 327
            A + V  L I      Y +FG+ +    N    LPK+ W  D A +L+++H +
Sbjct: 234 TAIIIVTVLYILVGLVGYLAFGNNVKG--NILLNLPKSDWLIDIANLLLVLHLL 285

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
PLN03074	473	auxin influx permease; Provisional	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.97
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.97
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.95
PRK10483	414	tryptophan permease; Provisional	99.7
PRK09664	415	tryptophan permease TnaB; Provisional	99.65
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.63
PRK15132	403	tyrosine transporter TyrP; Provisional	99.61
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.59
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.36
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.27
TIGR00912	359	2A0309 spore germination protein (amino acid perme	99.03
PRK10655	438	potE putrescine transporter; Provisional	98.89
TIGR00909	429	2A0306 amino acid transporter.	98.88
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.86
PRK10644	445	arginine:agmatin antiporter; Provisional	98.8
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.78
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.78
PRK11021	410	putative transporter; Provisional	98.77
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.67
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.57
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.57
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.55
PRK10580	457	proY putative proline-specific permease; Provision	98.54
PRK11387	471	S-methylmethionine transporter; Provisional	98.49
PRK15049	499	L-asparagine permease; Provisional	98.48
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.48
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.45
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.44
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.44
PRK10249	458	phenylalanine transporter; Provisional	98.43
TIGR00930	953	2a30 K-Cl cotransporter.	98.39
TIGR00913	478	2A0310 amino acid permease (yeast).	98.38
PRK10238	456	aromatic amino acid transporter; Provisional	98.35
PRK10746	461	putative transport protein YifK; Provisional	98.32
TIGR00911	501	2A0308 L-type amino acid transporter.	98.32
PRK10836	489	lysine transporter; Provisional	98.25
KOG1287	479	consensus Amino acid transporters [Amino acid tran	98.17
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.07
KOG3832	319	consensus Predicted amino acid transporter [Genera	97.98
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.93
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	97.85
PRK15238	496	inner membrane transporter YjeM; Provisional	97.68
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	97.61
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.59
KOG1286	554	consensus Amino acid transporters [Amino acid tran	97.42
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.14
COG0833	541	LysP Amino acid transporters [Amino acid transport	96.97
TIGR00907	482	2A0304 amino acid permease (GABA permease).	96.84
COG1457	442	CodB Purine-cytosine permease and related proteins	96.68
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	96.46
COG3949	349	Uncharacterized membrane protein [Function unknown	96.17
PRK11375	484	allantoin permease; Provisional	95.66
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	95.65
KOG1289	550	consensus Amino acid transporters [Amino acid tran	95.6
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	94.86
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	94.27
PRK09442	483	panF sodium/panthothenate symporter; Provisional	94.06
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	93.84
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	92.95
PRK11017	404	codB cytosine permease; Provisional	92.25
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	91.9
COG1966	575	CstA Carbon starvation protein, predicted membrane	90.69
PRK15015	701	carbon starvation protein A; Provisional	90.35
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	88.22
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	86.57
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	83.34

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=1.3e-58  Score=461.85  Aligned_cols=337  Identities=82%  Similarity=1.354  Sum_probs=301.2

Q ss_pred             CCchhhhhHHHhhcccccccCCCCCCCCcchhhhhhhhhhhhccccccCcchHHHHHHHhhhhhhhhhchHHHHHHHhch
Q 019025            1 MLPQKQAEEAIVSNFSETEHEGGGKEEGREDEQQQQHSMLSMKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGM   80 (347)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~   80 (347)
                      |.++++.|++.+++..|.|++.+++.+  +.  +..+++.+.|+..|||+|.++||+|++|+++|+|+|+||+||+++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~   76 (473)
T PLN03074          1 MMAGKQAETAIVGNYVEMEVEGGGEKE--EG--GGGGGKSRLKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGM   76 (473)
T ss_pred             CCCccccchhHhhccchhccccccccc--cC--CCCCCceeeeecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccH
Confidence            567788899999988888865322211  11  12356778899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhcccchhhhhhhHHHHHHHHHHHHHHh
Q 019025           81 LSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIA  160 (347)
Q Consensus        81 v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~~~~~~~~~~i~~~~~g~v~~li~  160 (347)
                      ++|+++++++++++.||+++++++|.|+++|+++++.+|++++.+|.|+++..+||+|+++...+++.+.+++|++|++.
T Consensus        77 v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~  156 (473)
T PLN03074         77 LSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIA  156 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999988888888999989999999999999999986666776666669999999


Q ss_pred             hcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCchhHHHHH
Q 019025          161 CASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYF  240 (347)
Q Consensus       161 ~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~v~~~~p~~~~~~f  240 (347)
                      ++++++++|+..++|.|+++++++++|++++|++|++|++|.+|..+++++++++++..+.++++++++++.|.++..+|
T Consensus       157 ~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f  236 (473)
T PLN03074        157 CASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYF  236 (473)
T ss_pred             HhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHH
Confidence            99999999999999999999999999999999999999999999998888777777777777777777777677788999


Q ss_pred             hhhhhHHHhcccccchHhHHHhcCCCccchhHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCCCchHHHHHHH
Q 019025          241 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVI  320 (347)
Q Consensus       241 ~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~~~~a~i  320 (347)
                      +++++++|+|+||+++|||+++||||+||++++..++.+++++|+.+|+.|||+|||++.++++++.|+|++.+++++++
T Consensus       237 ~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~  316 (473)
T PLN03074        237 TGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVI  316 (473)
T ss_pred             HHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998755788999998778999999


Q ss_pred             HHHHHhhcccceeEEEEechhhhhh
Q 019025          321 LMLIHQVQFQFTFIGFTDLPLLEQL  345 (347)
Q Consensus       321 l~~i~~~~~~~~s~~l~~~P~~q~~  345 (347)
                      +++++++    ++|+++++|+++..
T Consensus       317 ~~~i~~~----~sy~l~~~p~~~~~  337 (473)
T PLN03074        317 LMLIHQF----ITFGFACTPLYFVW  337 (473)
T ss_pred             HHHHHHH----HHHHHHHhhHHHHH
Confidence            9999999    99999999998863

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-49  Score=390.06  Aligned_cols=289  Identities=28%  Similarity=0.422  Sum_probs=250.8

Q ss_pred             hccccccCcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 019025           42 MKSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKN  121 (347)
Q Consensus        42 ~~~~~~~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~  121 (347)
                      ....-++++|.++|++|.++.++|.|+|+||||++|+||++|++++++.++++.||+++|.+||.+++.+.++++.    
T Consensus        30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~----  105 (437)
T KOG1303|consen   30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRY----  105 (437)
T ss_pred             CccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCC----
Confidence            3445688899999999999999999999999999999999999999999999999999999999888777765532    


Q ss_pred             hhhcHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc------cc-ccccchhhHhHHHHHHHhhccCC
Q 019025          122 HVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI------ND-RLDKRTWTYIFGACCATTVFIPS  193 (347)
Q Consensus       122 ~~~~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~------~~-~~~~~~~~~i~~~~~~pl~~i~s  193 (347)
                         .|.|+++++||+++ +..+...+...+|| |+.|++..++|+..+      ++ ..+++.|+++++++++|++|+||
T Consensus       106 ---~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~  181 (437)
T KOG1303|consen  106 ---RYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPN  181 (437)
T ss_pred             ---ChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCC
Confidence               37899999999988 54477888888998 688999888888642      44 56688999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCC---CCC--CCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc
Q 019025          194 FHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEG---ASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK  268 (347)
Q Consensus       194 l~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~---v~~--~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~  268 (347)
                      +++++++|..|.++++..+++.++.++.+|....   .++  ..+....  |+++|++.|+|+||+++||||++||+|++
T Consensus       182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~--f~a~g~iaFaf~gH~v~peIq~tMk~p~~  259 (437)
T KOG1303|consen  182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTV--FTALGIIAFAYGGHAVLPEIQHTMKSPPK  259 (437)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcch--hhhhhheeeeecCCeeeeehHhhcCCchh
Confidence            9999999999999987655566677777764321   122  2222212  89999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCC-CchHHHHHHHHHHHHhhcccceeEEEEechhhhhhc
Q 019025          269 FKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLP-KNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLI  346 (347)
Q Consensus       269 f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp-~~~~~~~a~il~~i~~~~~~~~s~~l~~~P~~q~~~  346 (347)
                      |+|++..++.+++.+|+++++.|||+|||+++  +|++.|++ +.++++.+++++.+|++    .+|+++++|++|.+.
T Consensus       260 f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~--~~il~s~~~p~~~~~~ani~i~~h~i----~s~~i~a~pl~~~~E  332 (437)
T KOG1303|consen  260 FKKALLISYIIVTFLYFPVAIIGYWAFGDSVP--DNILLSLQPPTWLIALANILIVLHLI----GSYQIYAQPLFDVVE  332 (437)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhccccc--hhhhhcccCchhHHHHHHHHHHHHHh----hhhhhhhcchHHHHH
Confidence            99999999999999999999999999999997  49999995 77889999999999999    999999999999864

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=4.4e-45  Score=353.93  Aligned_cols=296  Identities=19%  Similarity=0.177  Sum_probs=243.8

Q ss_pred             ccccccCcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccch
Q 019025           43 KSFLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNH  122 (347)
Q Consensus        43 ~~~~~~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~  122 (347)
                      .+...|+.|..++..|+.|+++|+|+|+||+||+++||+.|.+..++.+.++.|+.+++++|.++.++|..++..+|.+.
T Consensus        40 ~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~  119 (449)
T KOG1304|consen   40 LRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAET  119 (449)
T ss_pred             cccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHH
Confidence            44556789999999999999999999999999999999999999999999999999999999888888776665555432


Q ss_pred             hhcHHHH---hHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc-----ccccccchhhHhHHHHHHHhhccCC
Q 019025          123 VIQWFEV---LDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI-----NDRLDKRTWTYIFGACCATTVFIPS  193 (347)
Q Consensus       123 ~~~y~ev---~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~-----~~~~~~~~~~~i~~~~~~pl~~i~s  193 (347)
                      +.+-.|-   ..+.+||++|.+ +.+++.+.++| |++|+++.++|++.+     ....+.|.|+.+..+.++|++++||
T Consensus       120 ~~~a~~~~~~~~r~~g~~~r~~-V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~  198 (449)
T KOG1304|consen  120 AESAMEGGPGWLRKYGPAARFV-VNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRN  198 (449)
T ss_pred             HHHHHcCCcHHHHhhcHHHHHH-HHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            2111111   133456655555 77788888888 899999999999765     2456889999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccch---
Q 019025          194 FHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK---  270 (347)
Q Consensus       194 l~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~---  270 (347)
                      ++.|+++|+++.+..+. ++.++.....++.++..+.+.-.++.++...+|+.+|||+|++++.|++++||+|++|+   
T Consensus       199 Lk~Lsp~Sl~Anv~~~~-g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~  277 (449)
T KOG1304|consen  199 LKILSPFSLFANVFILV-GLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPF  277 (449)
T ss_pred             hHHhhHHHHHHHHHHHH-HHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCcc
Confidence            99999999999886443 33333444443332211222223467777888999999999999999999999999999   


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCCCchHHHHHHHHHHHHhhcccceeEEEEechhhhhhc
Q 019025          271 YIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLI  346 (347)
Q Consensus       271 ~v~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~~~~a~il~~i~~~~~~~~s~~l~~~P~~q~~~  346 (347)
                      +++..+|.+++++|..+|.+||++|||+++  +.|+.|+|++++.+.+++++++..+    +|||+|++|..|.+.
T Consensus       278 gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~--~sITLNLP~~~l~~~Vkl~~ai~I~----ls~pLQ~yv~~eIi~  347 (449)
T KOG1304|consen  278 GVLNLGMGIVTLLYIFLGFFGYLAFGDDVK--GSITLNLPQEILSQTVKLLLAIAIF----LTYPLQFYVPIEIIE  347 (449)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcccccc--ceEEecCCccHHHHHHHHHHHHHHH----HcCchhhhhhHHHHH
Confidence            999999999999999999999999999997  5999999999999999999999999    999999999998763

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=1.2e-41  Score=340.51  Aligned_cols=281  Identities=15%  Similarity=0.186  Sum_probs=224.6

Q ss_pred             ccccCcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhh
Q 019025           45 FLWHGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVI  124 (347)
Q Consensus        45 ~~~~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~  124 (347)
                      ..-++|++.+|.+|++|+++|+|+|+||+||+++||++|++++++.+.++.||.+++.++.    ++.+         ..
T Consensus        55 ~~~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~----~~~~---------~~  121 (467)
T PTZ00206         55 TIIPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAA----DKTN---------IR  121 (467)
T ss_pred             hccCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCC---------CC
Confidence            3467788999999999999999999999999999999999999999999999999997652    2111         11


Q ss_pred             cHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccc----------cccccc-hhhHhHHHHHHHhhccC
Q 019025          125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYIN----------DRLDKR-TWTYIFGACCATTVFIP  192 (347)
Q Consensus       125 ~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~----------~~~~~~-~~~~i~~~~~~pl~~i~  192 (347)
                      +|+|++++++||+++.+ +.+.+.+.++| |+.|++..+|++...-          ...++| .|.+++.++++|++++|
T Consensus       122 sY~~la~~~~G~~g~~~-v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r  200 (467)
T PTZ00206        122 TYEGVARVLLGPWGSYY-VAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPR  200 (467)
T ss_pred             CHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhccccc
Confidence            68999999999988876 77777778888 7889998888765321          111233 34455667899999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC---CCC---c-----hhHHHHHhhhhhHHHhcccccchHhHHH
Q 019025          193 SFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGAS---HTA---P-----TKLVLYFTGATNILYTFGGHAVTVEIMH  261 (347)
Q Consensus       193 sl~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~v~---~~~---p-----~~~~~~f~a~g~i~faF~gh~~~~~I~~  261 (347)
                      +++++|++|.+|+++.+|.++.+++.+..++.+++.+   ...   +     +...+++.++|+++|||.||.+.||+++
T Consensus       201 ~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~  280 (467)
T PTZ00206        201 HIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYM  280 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHH
Confidence            9999999999999877766544444555444333221   110   0     1123578899999999999999999999


Q ss_pred             hcCCC--ccchhHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccccC-CC-chHHHHHHHHHHHHhhcccceeEEEE
Q 019025          262 AMWKP--QKFKYIYLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLL-PK-NRWRDAAVILMLIHQVQFQFTFIGFT  337 (347)
Q Consensus       262 ~M~~P--~~f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~l-p~-~~~~~~a~il~~i~~~~~~~~s~~l~  337 (347)
                      |||+|  +|+.++...++.+++++|..+|++||++|||+++  +|++.|+ |. +....++++.+.++++    .+||++
T Consensus       281 ~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~--~~Illn~~p~~~~~~~v~~~~~~~~v~----~sypL~  354 (467)
T PTZ00206        281 DMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVT--GSVLLMYDPVNEPAIMVGFVGVLVKLF----VSYALL  354 (467)
T ss_pred             hhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc--hHHHHhCCCCCCchhhHHHHHHHHHHH----Hhhhhh
Confidence            99984  5788899999999999999999999999999995  6999999 53 4567788888999999    999999


Q ss_pred             echhhhhh
Q 019025          338 DLPLLEQL  345 (347)
Q Consensus       338 ~~P~~q~~  345 (347)
                      ++|+++.+
T Consensus       355 ~~p~r~~i  362 (467)
T PTZ00206        355 GMACRNAL  362 (467)
T ss_pred             hhhHHHHH
Confidence            99988754

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=9.8e-42  Score=334.69  Aligned_cols=283  Identities=23%  Similarity=0.346  Sum_probs=232.8

Q ss_pred             cCcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHH
Q 019025           48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF  127 (347)
Q Consensus        48 ~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~  127 (347)
                      |++|.+++.+|++|+++|+|+|+||++|+++||+.|++++++++.++.||.+++.+++.+.+ +++ +       ..+|+
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~-~~~-~-------~~~y~   71 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP-NGT-G-------RRSYG   71 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc-ccc-c-------ccccc
Confidence            78999999999999999999999999999999999999999999999999999988743222 111 1       11578


Q ss_pred             HHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccccc------ccccchhhHhHHHHHHHhhccCCCCchhHH
Q 019025          128 EVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYIND------RLDKRTWTYIFGACCATTVFIPSFHNYRIW  200 (347)
Q Consensus       128 ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~------~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~  200 (347)
                      |++++++||+++++ ..+++...++| ++.|++..++++..+.+      ..++..|.+++.++++|++++|+++++++.
T Consensus        72 ~l~~~~~G~~~~~~-~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~  150 (409)
T PF01490_consen   72 DLARRAFGPKGKWF-VDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYL  150 (409)
T ss_pred             cccccccccccccc-ccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHH
Confidence            99999999999876 66666667777 68899888888875422      346677888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh--cccCCCCCCC---CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccch---hH
Q 019025          201 SFLGLGMTTYTAWYLTIAAVV--HGQVEGASHT---APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK---YI  272 (347)
Q Consensus       201 S~~g~~~~~~~~~~i~v~~~~--~g~~~~v~~~---~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~---~v  272 (347)
                      |.+|.++.++...........  .+++.+.++.   .+.++.+++.++|+++|+|+||.++||+++|||+|++++   ++
T Consensus       151 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~  230 (409)
T PF01490_consen  151 SILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKV  230 (409)
T ss_pred             hhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccccccee
Confidence            999998766421111111111  1222222222   224567899999999999999999999999999999988   88


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCCCch-HHHHHHHHHHHHhhcccceeEEEEechhhhhhc
Q 019025          273 YLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNR-WRDAAVILMLIHQVQFQFTFIGFTDLPLLEQLI  346 (347)
Q Consensus       273 ~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~-~~~~a~il~~i~~~~~~~~s~~l~~~P~~q~~~  346 (347)
                      ...++.+++++|+.+|++||++|||+++  +|++.|+|++. +..++++++.++++    .+||++++|.++.+.
T Consensus       231 ~~~s~~~~~~~y~~~g~~gy~~fg~~~~--~~il~n~~~~~~~~~i~~~~~~i~~~----~s~pl~~~p~~~~l~  299 (409)
T PF01490_consen  231 LSISMIICFIIYLLFGIFGYLAFGDSVQ--GNILLNLPNDDVLIIIARILLVISLL----LSYPLQLFPARNSLE  299 (409)
T ss_pred             eeehhhhhhHHhhhhhhcccceeeeeec--chhhhcCCCcccccccccccchhhhh----hccccccchhHhhhh
Confidence            9999999999999999999999999996  59999999875 88999999999999    999999999998764

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-32  Score=252.60  Aligned_cols=282  Identities=12%  Similarity=0.167  Sum_probs=233.6

Q ss_pred             CcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHH
Q 019025           49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE  128 (347)
Q Consensus        49 ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~e  128 (347)
                      .-+.++|-+|+.|++-|.-+++||+|..+.||+ |+..++..|.+++||+++|..|.  |......+-++.|+   +|-+
T Consensus       116 kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CL--YE~~~dGevVrvRd---sYva  189 (524)
T KOG4303|consen  116 KISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECL--YENGEDGEVVRVRD---SYVA  189 (524)
T ss_pred             ccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhh--ccCCCCCcEEEeeh---hHHH
Confidence            347899999999999999999999999999998 99999999999999999999872  43333334456666   7999


Q ss_pred             HhHhhhcccch-hhhhhhHHHH-HHHHHHHHHHhhcccccc--cccccccchhhHhHHHHHHHhhccCCCCchhHHHHHH
Q 019025          129 VLDGLLGPYWK-AVGLAFNCTF-LLFGSVIQLIACASNIYY--INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG  204 (347)
Q Consensus       129 v~~~~~G~~~~-~~~~~~~i~~-~~~g~v~~li~~~~~l~~--~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g  204 (347)
                      +++.+++|+.+ |+ +...+.. ++..|++|++.+++.++.  +...++++.|+++.++..+|.+|+|+++-.+.+|+++
T Consensus       190 IA~~C~~P~lGgr~-V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~c  268 (524)
T KOG4303|consen  190 IADFCYKPGLGGRW-VLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFC  268 (524)
T ss_pred             HHHHhcCCCcchhe-eeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence            99999998844 55 4445544 555699999988887764  4457899999999999999999999999998899888


Q ss_pred             HHHHHHHHHHHHHhhhhcccCCCCCCCCc---hhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccchhHHHHHHHHHH
Q 019025          205 LGMTTYTAWYLTIAAVVHGQVEGASHTAP---TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVF  281 (347)
Q Consensus       205 ~~~~~~~~~~i~v~~~~~g~~~~v~~~~p---~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~  281 (347)
                      .++-+.+..+++.+++..-.  ++.++..   .+..++..++|+++|+|..|...|+++.+|++|++|..++.++-+..+
T Consensus       269 t~sH~viN~i~v~YCLs~~~--dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAa  346 (524)
T KOG4303|consen  269 TISHLVINLIMVLYCLSFVS--DWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAA  346 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhh--hccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHHH
Confidence            87766565455556665432  3333321   355677789999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhhcCccccccccccccCCCchHHHHHHHHHHHHhhcccceeEEEEechhhhhh
Q 019025          282 TLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQVQFQFTFIGFTDLPLLEQL  345 (347)
Q Consensus       282 ~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~~~~a~il~~i~~~~~~~~s~~l~~~P~~q~~  345 (347)
                      ++-..+|..+|++|||.+++  .|.+|+|+..++.+++++.++..+    .+||+-.+.+.|.+
T Consensus       347 VfK~~Fg~~~fLTf~~~Tqe--vItnnLp~qsfk~~VN~fLV~KAL----LSYPLPfyAAvelL  404 (524)
T KOG4303|consen  347 VFKVVFGMLGFLTFGELTQE--VITNNLPNQSFKILVNLFLVVKAL----LSYPLPFYAAVELL  404 (524)
T ss_pred             HHHHHHHHheeeeechhhHH--HHhcCCCccchhhhhhHHHHHHHH----HcCCchHHHHHHHH
Confidence            99999999999999999975  999999998999999999999999    99987655555443

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.97  E-value=1.1e-30  Score=255.41  Aligned_cols=276  Identities=17%  Similarity=0.198  Sum_probs=213.8

Q ss_pred             cchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        50 gS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      .|...+.+|+.|+++|+|+|++|+||++.|.+.|+++++++|.++.++.+++.++-    ++.+++         +|+++
T Consensus         6 ~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a----~~~~~~---------ty~~l   72 (411)
T KOG1305|consen    6 TSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCA----KKSGER---------TYSSL   72 (411)
T ss_pred             cchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhh----hhcCCC---------CHHHH
Confidence            47889999999999999999999999999999999999999999999999998752    222211         48899


Q ss_pred             hHhhhcccchhhhhhhHHHHHHHHHHHHHHhhccccccc-------cc---c-cccch-hhHhHHHHHHHhhccCCCCch
Q 019025          130 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-------ND---R-LDKRT-WTYIFGACCATTVFIPSFHNY  197 (347)
Q Consensus       130 ~~~~~G~~~~~~~~~~~i~~~~~g~v~~li~~~~~l~~~-------~~---~-~~~~~-~~~i~~~~~~pl~~i~sl~~l  197 (347)
                      ++..+|+.++ +...+.......|++.|++..+|.+..+       +.   + .++.. |++....+++|+++.|++.++
T Consensus        73 ~~~~~g~~g~-~~~~v~~~~~~~g~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~L  151 (411)
T KOG1305|consen   73 GDLIFGKLGK-VDAAVAVKCFGVGMVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSL  151 (411)
T ss_pred             HHHHcCCCce-eeehhhHHhhhccceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhH
Confidence            9999999874 3233332222233466776666655421       11   1 12222 577778899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccc-CCCCCCCCchh--HHHHHhhhhhHHHhcccccchHhHHHhcCCCcc--chhH
Q 019025          198 RIWSFLGLGMTTYTAWYLTIAAVVHGQ-VEGASHTAPTK--LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKYI  272 (347)
Q Consensus       198 ~~~S~~g~~~~~~~~~~i~v~~~~~g~-~~~v~~~~p~~--~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~--f~~v  272 (347)
                      ++.|.+++++..|....+.+..+.... .+......|.+  +.+.+.++|+++|+|.||.+..+|++|||+|++  ++++
T Consensus       152 k~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v  231 (411)
T KOG1305|consen  152 KYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRV  231 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHH
Confidence            999999998877665433333333222 12222222322  257899999999999999999999999999986  7888


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcCccccccccccccCCCchH-------HHHHHHHHHHHhhcccceeEEEEechhhhhh
Q 019025          273 YLFATLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRW-------RDAAVILMLIHQVQFQFTFIGFTDLPLLEQL  345 (347)
Q Consensus       273 ~~~s~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~-------~~~a~il~~i~~~~~~~~s~~l~~~P~~q~~  345 (347)
                      -..+...+.++|..+|.+||+.|||.+.  +|++.+.|+..-       ...++..++++..    .++|+..+|+++.+
T Consensus       232 ~~~~~~~~~~iy~~~g~~GYL~Fg~~v~--~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~----l~~pi~~fPlr~~l  305 (411)
T KOG1305|consen  232 SNIAIILATLIYLLTGLFGYLTFGDLVK--GNLLHNYDSILNNLLRSFPLLCVRLRIAVAVL----LTFPIVLFPLRMNL  305 (411)
T ss_pred             HHHHHHHHHHHHHHHHHhhhheecccch--HHHHhcCCcccchhHhhhhHHHHHHHHHHHHH----HHHHHHhchHHHHH
Confidence            8999999999999999999999999996  699999985322       4789999999999    99999999998765

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.95  E-value=1.9e-27  Score=234.38  Aligned_cols=250  Identities=18%  Similarity=0.235  Sum_probs=201.1

Q ss_pred             CcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHH
Q 019025           49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE  128 (347)
Q Consensus        49 ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~e  128 (347)
                      ..|.+++.++++++.+|+|+|+||++++..|++++++++++.+.++.++.+++.+++.++    ++++.       ++.+
T Consensus         8 ~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~----~~~~~-------~~~~   76 (415)
T COG0814           8 TSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSS----PNGKA-------SITS   76 (415)
T ss_pred             CcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCcc-------cHHH
Confidence            446788899999999999999999999999999999999999999999999998774332    22211       3679


Q ss_pred             HhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc-----ccc-cccchhhHhHHHHHHHhhccCCCCchhHHH
Q 019025          129 VLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI-----NDR-LDKRTWTYIFGACCATTVFIPSFHNYRIWS  201 (347)
Q Consensus       129 v~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~-----~~~-~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S  201 (347)
                      ++++.+||+|+.+ ..+...+.+++ ++.|.+..++.+...     ... .+++.+.+++.+++.++++.++...+|..|
T Consensus        77 ~~~~~~G~~~~~l-i~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts  155 (415)
T COG0814          77 LVEDYLGKKGGIL-IGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITS  155 (415)
T ss_pred             HHHHHhCcchHHH-HHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            9999999999987 67777788888 788998777776542     112 567778888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccCC---CCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc--chhHHHHH
Q 019025          202 FLGLGMTTYTAWYLTIAAVVHGQVE---GASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKYIYLFA  276 (347)
Q Consensus       202 ~~g~~~~~~~~~~i~v~~~~~g~~~---~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~--f~~v~~~s  276 (347)
                      ++...+..+.+++. +....+-+..   ..+...+.++.++..++|+++|||+||+++|++++||+++++  .+|+...+
T Consensus       156 ~l~~~~v~~~~~l~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~  234 (415)
T COG0814         156 LLVFGKVIYLVLLV-VYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIG  234 (415)
T ss_pred             HHHHHHHHHHHHHH-HHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHH
Confidence            99887766554321 2222221111   111111356778899999999999999999999999998765  99999999


Q ss_pred             HHHHHHHHhhhhhhhhhhcCccccccccccccCCCch
Q 019025          277 TLYVFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNR  313 (347)
Q Consensus       277 ~~~~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~  313 (347)
                      ..+..++|+.++.++|..+|+.+.  +|++++.|++.
T Consensus       235 ~~~~~vlyi~~~~~~~~~~~~~~~--~~il~~~~~~~  269 (415)
T COG0814         235 SLIALVLYILVGFFVFGCFGSLVF--GNILAAKEQNI  269 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccH--HHHHHccCchH
Confidence            999999999999999999999996  59999998654

>PRK10483 tryptophan permease; Provisional

Probab=99.70  E-value=4.4e-16  Score=152.46  Aligned_cols=229  Identities=16%  Similarity=0.175  Sum_probs=156.5

Q ss_pred             cCcchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHH
Q 019025           48 HGGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF  127 (347)
Q Consensus        48 ~ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~  127 (347)
                      +.++.+.+.+-+..+.||+|+|+||++.++.|+.+++++++++++.+.||+.++.+..    .+.++ +.       ++.
T Consensus         9 ~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~----l~~~~-g~-------~~~   76 (414)
T PRK10483          9 TSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEAN----LNYRI-GS-------SFD   76 (414)
T ss_pred             CCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCC-CC-------CHH
Confidence            4567778889999999999999999999999999999999999999999999997653    22221 22       467


Q ss_pred             HHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc----ccccccchhhHhHHHHHHHhhccCCCCchhHHHH
Q 019025          128 EVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI----NDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSF  202 (347)
Q Consensus       128 ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~----~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~  202 (347)
                      .++++.+||+|+.+ ..++..+++|+ .+.|+...++.+...    +.+.+++.-.++|.++...+++..+ +...+.+-
T Consensus        77 tma~~~LG~~g~~i-~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt-~~vd~~n~  154 (414)
T PRK10483         77 TITKDLLGKGWNVV-NGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST-KAVSRMTA  154 (414)
T ss_pred             HHHHHHcChHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh-hHHHHHHH
Confidence            89999999998875 45666667777 567876666555432    1123444445677777777777643 33333332


Q ss_pred             HHHHHHHHHHHHHHHhhhhcc-cCCC---CCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCC-CccchhHHHHHH
Q 019025          203 LGLGMTTYTAWYLTIAAVVHG-QVEG---ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFAT  277 (347)
Q Consensus       203 ~g~~~~~~~~~~i~v~~~~~g-~~~~---v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~-P~~f~~v~~~s~  277 (347)
                      +=.. .....+.+.+..+... +.+.   .+.+.+..+...+.++|++++||+.|.++|++.+.+++ ++|.+|++..+.
T Consensus       155 ~l~~-~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs  233 (414)
T PRK10483        155 IVLG-AKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGT  233 (414)
T ss_pred             HHHH-HHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHH
Confidence            2111 1111111222222211 1111   11122233456788999999999999999999999985 678999999999


Q ss_pred             HHHHHHHhhhhhhh
Q 019025          278 LYVFTLTIPSATAV  291 (347)
Q Consensus       278 ~~~~~ly~~~g~~g  291 (347)
                      .+.+++|+.-=...
T Consensus       234 ~Iplv~yl~W~~~~  247 (414)
T PRK10483        234 LMALALYTIWLLAT  247 (414)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998843333

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.65  E-value=5.1e-15  Score=144.91  Aligned_cols=222  Identities=15%  Similarity=0.153  Sum_probs=146.9

Q ss_pred             chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL  130 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~  130 (347)
                      +.+.+.+-++.+.||+|+|+||++.++.|+.+++++++++++.+.||+.++.+..    .+.++ +.       +...++
T Consensus        10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~----l~~~~-g~-------~l~tma   77 (415)
T PRK09664         10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEAN----LNYPV-GS-------SFNTIT   77 (415)
T ss_pred             chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCC-CC-------CHHHHH
Confidence            4555568899999999999999999999999999999999999999999997653    22221 22       356899


Q ss_pred             HhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc-cc----ccccchhhHhHHHHHHHhhccCCCCchhHHHHHH
Q 019025          131 DGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI-ND----RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG  204 (347)
Q Consensus       131 ~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~-~~----~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g  204 (347)
                      ++.+||+|+.+ ..++..+++|+ ++.|+...++.+... ++    +.+++.-.++|.++..++++..+ +...+.+-+=
T Consensus        78 ~~~LG~~g~~i-~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l  155 (415)
T PRK09664         78 KDLIGNTWNII-SGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAASRITSLF  155 (415)
T ss_pred             HHHcChHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHH
Confidence            99999998876 55566667777 567776655555432 11    23334445677777777777664 3333332211


Q ss_pred             HHHHHHHHHHHHHhhhh-cccCCCCCC-C---Cc-hhHHHHHhhhhhHHHhcccccchHhHHHhcCC-CccchhHHHHHH
Q 019025          205 LGMTTYTAWYLTIAAVV-HGQVEGASH-T---AP-TKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFAT  277 (347)
Q Consensus       205 ~~~~~~~~~~i~v~~~~-~g~~~~v~~-~---~p-~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~-P~~f~~v~~~s~  277 (347)
                      .. ....++.+.+.... +-+.+.... +   .. ..+...+.++|++++||+.|.++|++.+.+++ ++|.++.+..+.
T Consensus       156 ~~-~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs  234 (415)
T PRK09664        156 LG-LKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGS  234 (415)
T ss_pred             HH-HHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHH
Confidence            11 11111111122221 111111111 1   00 11345778999999999999999999999985 567888888888


Q ss_pred             HHHHHHHhhh
Q 019025          278 LYVFTLTIPS  287 (347)
Q Consensus       278 ~~~~~ly~~~  287 (347)
                      .+..++|++.
T Consensus       235 ~IpLviY~~W  244 (415)
T PRK09664        235 LLALVIYLFW  244 (415)
T ss_pred             HHHHHHHHHH
Confidence            8888888544

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.63  E-value=1.8e-14  Score=141.49  Aligned_cols=224  Identities=13%  Similarity=0.190  Sum_probs=146.7

Q ss_pred             cchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        50 gS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      .+.+.+.+-++.+.+|+|+|+||++.+..|++++++++++.+.++.+|..++.++.    .+.++ +.       ++.++
T Consensus         3 ~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~----~~~~~-~~-------~~~~~   70 (394)
T PF03222_consen    3 NSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVS----LNTPE-GS-------SLTSM   70 (394)
T ss_pred             chHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCC-CC-------CHHHH
Confidence            35677888899999999999999999999999999999999999999999987653    22221 12       47799


Q ss_pred             hHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccc----c-cccccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025          130 LDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYI----N-DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL  203 (347)
Q Consensus       130 ~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~----~-~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~  203 (347)
                      +++.+||+|+.+ ..+...+..|+ .+.|....++.+...    + .+.+++.-..++.+++..+.+..+ +.....+-+
T Consensus        71 a~~~lG~~g~~~-~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~-~~v~~~n~~  148 (394)
T PF03222_consen   71 AEKYLGKKGGIV-IGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGT-KAVDRINRV  148 (394)
T ss_pred             HHHHhChHHHHH-HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH
Confidence            999999999986 44454555666 466776555544332    1 122333333444444444444332 111122111


Q ss_pred             HHHHHHHHHHHHHHhh-hhcccCCCCCC--CCchhHHHHHhhhhhHHHhcccccchHhHHHhcC-CCccchhHHHHHHHH
Q 019025          204 GLGMTTYTAWYLTIAA-VVHGQVEGASH--TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKYIYLFATLY  279 (347)
Q Consensus       204 g~~~~~~~~~~i~v~~-~~~g~~~~v~~--~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~-~P~~f~~v~~~s~~~  279 (347)
                      -.. .....+...+.. +.+-+.+...+  +.+.++...+.++|++++||+.|.++|++.+.++ |++|.+|++..+..+
T Consensus       149 lv~-~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i  227 (394)
T PF03222_consen  149 LVF-GMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLI  227 (394)
T ss_pred             HHH-HHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence            111 011111111111 11111122222  2245678888999999999999999999999999 578899999999998


Q ss_pred             HHHHHhhhh
Q 019025          280 VFTLTIPSA  288 (347)
Q Consensus       280 ~~~ly~~~g  288 (347)
                      ..++|++.-
T Consensus       228 ~lv~yl~w~  236 (394)
T PF03222_consen  228 PLVMYLLWV  236 (394)
T ss_pred             HHHHHHHHH
Confidence            888887653

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.61  E-value=2.1e-14  Score=140.96  Aligned_cols=232  Identities=15%  Similarity=0.190  Sum_probs=150.7

Q ss_pred             chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL  130 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~  130 (347)
                      +.+.+.+.+..+.||+|+|+||.+.+..|++++++++++++.+..|+++++.++.    .+.+ ++.       ++.+++
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~----~~~~-~~~-------~~~~~a   71 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVY----QHVP-ADT-------GLGTLA   71 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCC-CCC-------CHHHHH
Confidence            5677889999999999999999999999999999999999999999999986542    2222 222       357999


Q ss_pred             HhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccc-----cccccccchhhHhHHHHHHHhhccCCCCchhHHHHHH
Q 019025          131 DGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYY-----INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG  204 (347)
Q Consensus       131 ~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~-----~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g  204 (347)
                      ++.+||+|+.+ ..+...+..|. ++.|...+++.+..     ++...+...+.++|.++.....+..+ +...+.+-+ 
T Consensus        72 ~~~LG~~g~~i-~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~-~~v~~~n~~-  148 (403)
T PRK15132         72 KRYLGRYGQWL-TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGT-SSVDLFNRF-  148 (403)
T ss_pred             HHHhChHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccH-HHHHHHHHH-
Confidence            99999999986 44555556666 57788765554432     12233444566666655554555443 222222211 


Q ss_pred             HHHHHHHHHHHHHhhhhcc-cCCCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCC-CccchhHHHHHHHHHHH
Q 019025          205 LGMTTYTAWYLTIAAVVHG-QVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATLYVFT  282 (347)
Q Consensus       205 ~~~~~~~~~~i~v~~~~~g-~~~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~-P~~f~~v~~~s~~~~~~  282 (347)
                      .+......+...+..+... +.++... .|.+....+.++|++++||+.|.++|++.+.+++ ++|.+|++..+..+.++
T Consensus       149 L~~~~ii~~~~~~~~l~p~~~~~~L~~-~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li  227 (403)
T PRK15132        149 LFSAKIIFLVVMLALMMPHIHKVNLLT-LPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLV  227 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHhc-CCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence            0100111111111111111 1111111 1111123678899999999999999999999985 67789999999999999


Q ss_pred             HHhhhhhhhhhhcCcc
Q 019025          283 LTIPSATAVYWSFGDQ  298 (347)
Q Consensus       283 ly~~~g~~gY~afG~~  298 (347)
                      +|+.-=......-+.+
T Consensus       228 ~yl~W~~~~lg~l~~~  243 (403)
T PRK15132        228 AYIFWQLATLGSIDST  243 (403)
T ss_pred             HHHHHHHHHHhCCCHH
Confidence            9887766555544433

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.59  E-value=1.9e-14  Score=140.65  Aligned_cols=227  Identities=15%  Similarity=0.072  Sum_probs=148.3

Q ss_pred             HHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhccc
Q 019025           58 SCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPY  137 (347)
Q Consensus        58 nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~  137 (347)
                      ..+++++|+|++++|.++++.|+.++.+.+++.++++.+++.++.++    ..+.++++        ++.|.+++++||+
T Consensus         5 lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el----~~~~p~~~--------~~~~~~~~~~G~~   72 (381)
T TIGR00837         5 IIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEV----YLTYPGGA--------SFNTIAKDLLGKT   72 (381)
T ss_pred             EeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCCC--------CHHHHHHHHhCHH
Confidence            45689999999999999999999999999999999999999887654    34443221        3679999999998


Q ss_pred             chhhhhhhHHHHHHHH-HHHHHHhhcccccc-----cccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHHHH
Q 019025          138 WKAVGLAFNCTFLLFG-SVIQLIACASNIYY-----INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYT  211 (347)
Q Consensus       138 ~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~-----~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~~~  211 (347)
                      ++.+ ......+.++. ++.|.+..++.+..     .+...+.+.+.+++.+++.++.+. ..+...+++.+.....+..
T Consensus        73 ~g~~-~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-G~~~~~~v~~i~~~~~l~~  150 (381)
T TIGR00837        73 GNII-AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWL-STSAVDRITRVLIFGKIIA  150 (381)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHH
Confidence            8865 44445445555 45566544444322     122223333344444455555544 3466666655544432221


Q ss_pred             HHHHHHhhhhcccCCCC-CC-CCchhHHHHHhhhhhHHHhcccccchHhHHHhcCC-CccchhHHHHHHHHHHHHHhhhh
Q 019025          212 AWYLTIAAVVHGQVEGA-SH-TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKYIYLFATLYVFTLTIPSA  288 (347)
Q Consensus       212 ~~~i~v~~~~~g~~~~v-~~-~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~-P~~f~~v~~~s~~~~~~ly~~~g  288 (347)
                      ...+.+....+.+.++. +. ..+..+.+.+.+++...++|++|.+++++.++++| ++|.+|.+..+..+++++|+.+.
T Consensus       151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~  230 (381)
T TIGR00837       151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQ  230 (381)
T ss_pred             HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122222322221111 10 11234567788999999999999999999999974 55689999999999999999887


Q ss_pred             hhhhhhcCcc
Q 019025          289 TAVYWSFGDQ  298 (347)
Q Consensus       289 ~~gY~afG~~  298 (347)
                      ....-..+.+
T Consensus       231 ~~~~g~~~~~  240 (381)
T TIGR00837       231 LATMGNLPRS  240 (381)
T ss_pred             HHHhCCCCHH
Confidence            6666555443

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.36  E-value=4.7e-11  Score=117.49  Aligned_cols=229  Identities=11%  Similarity=0.069  Sum_probs=141.9

Q ss_pred             HHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhcc
Q 019025           57 FSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGP  136 (347)
Q Consensus        57 ~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~  136 (347)
                      +.+..+.||+|+|+||......|.++.++++++...++.|+...+.+..    .+.++++.       ++.|++++.+||
T Consensus        26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~----L~~~~~~~-------~i~~v~~~~lG~   94 (443)
T PRK13629         26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLC----LSGSNPSG-------NITETVEEHFGK   94 (443)
T ss_pred             HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HccCCCCC-------CHHHHHHHHcCh
Confidence            6788999999999999999999999999999999999999999886542    22211222       367999999999


Q ss_pred             cchhhhhhhHHHHHHHH-HHHHHHhhcccccc-----ccc-ccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 019025          137 YWKAVGLAFNCTFLLFG-SVIQLIACASNIYY-----IND-RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTT  209 (347)
Q Consensus       137 ~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~-----~~~-~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~  209 (347)
                      +|+.+ ..+...+.+|. +.+|.....+.+..     ++- ..++....+++.+++....+..+ +..-+++-+ ++...
T Consensus        95 ~g~~i-~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~-Lv~~~  171 (443)
T PRK13629         95 TGGVV-ITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSY-LVWPF  171 (443)
T ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH-HHHHH
Confidence            99986 44444444554 45666544433322     111 22333334455555555555443 222222211 11111


Q ss_pred             HHHHHHHHhhhhccc-CCCC---CC-----CCc-hhHHHHHhhhhhHHHhcccccchHhHHHh----cC-----C--Ccc
Q 019025          210 YTAWYLTIAAVVHGQ-VEGA---SH-----TAP-TKLVLYFTGATNILYTFGGHAVTVEIMHA----MW-----K--PQK  268 (347)
Q Consensus       210 ~~~~~i~v~~~~~g~-~~~v---~~-----~~p-~~~~~~f~a~g~i~faF~gh~~~~~I~~~----M~-----~--P~~  268 (347)
                      ..++.+....+.... .++.   +.     .+. ......+.++|++++||+-|+++|++...    ++     +  ++|
T Consensus       172 i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k  251 (443)
T PRK13629        172 IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK  251 (443)
T ss_pred             HHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence            111111111221111 0111   10     001 11235778999999999999999999998    43     3  455


Q ss_pred             chhHHHHHHHHHHHHHhhhhhhhhhhcCccc
Q 019025          269 FKYIYLFATLYVFTLTIPSATAVYWSFGDQL  299 (347)
Q Consensus       269 f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~  299 (347)
                      -++++..+..+.+++|+..-..+-..-+++-
T Consensus       252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~  282 (443)
T PRK13629        252 CSQIISRASMLMVAVVMFFAFSCLFTLSPQN  282 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            7788999999889999888777777666544

>TIGR00814 stp serine transporter

Probab=99.27  E-value=2.2e-10  Score=112.60  Aligned_cols=232  Identities=10%  Similarity=0.016  Sum_probs=133.9

Q ss_pred             HHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhc
Q 019025           56 WFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLG  135 (347)
Q Consensus        56 ~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G  135 (347)
                      .+.+..+++|+|+|.||...++.||++.++..++...++.++..++.+.+    ...+.++.       ++.|++++.+|
T Consensus         9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~----l~~~~p~~-------~i~~~~~~~fG   77 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFL----LSSKNPCE-------DITEVVEEHFG   77 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCC-------CHHHHHHHHcC
Confidence            35678899999999999999999999888888887778888888776542    22222222       35799999999


Q ss_pred             ccchhhhhhhHHHHHHH-HHHHHHHhhcccccc-cc----cccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 019025          136 PYWKAVGLAFNCTFLLF-GSVIQLIACASNIYY-IN----DRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTT  209 (347)
Q Consensus       136 ~~~~~~~~~~~i~~~~~-g~v~~li~~~~~l~~-~~----~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~  209 (347)
                      |+++.+ ..+...+..+ .+..|.....+.+.. +.    .+...+.+..+..++++-.......+.+..++-+-....+
T Consensus        78 k~~G~i-i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~i  156 (397)
T TIGR00814        78 KNWGIL-ITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLV  156 (397)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence            998876 3333333223 245555444333221 11    1112232221111222122222234444444333221111


Q ss_pred             HHHHHHHHhhhhcccCCCCCCCC--chhHHHHHhhhhhHHHhcccccchHhHHHh----cCC----CccchhHHHHHHHH
Q 019025          210 YTAWYLTIAAVVHGQVEGASHTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHA----MWK----PQKFKYIYLFATLY  279 (347)
Q Consensus       210 ~~~~~i~v~~~~~g~~~~v~~~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~----M~~----P~~f~~v~~~s~~~  279 (347)
                      .....+.+..+.+-+.++....+  ...+.+++.+++..++||++|.++++...+    .++    ++|.+|++..+..+
T Consensus       157 i~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i  236 (397)
T TIGR00814       157 LILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLI  236 (397)
T ss_pred             HHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence            11111111222121111111111  123567889999999999999999999833    442    34568889999888


Q ss_pred             HHHHHhhhhhhhhhhcCccc
Q 019025          280 VFTLTIPSATAVYWSFGDQL  299 (347)
Q Consensus       280 ~~~ly~~~g~~gY~afG~~~  299 (347)
                      .+++|+..-...-...+++.
T Consensus       237 ~~~~y~~~~~s~~~~l~~~~  256 (397)
T TIGR00814       237 LVATVMFFVFSCVLSLSPAE  256 (397)
T ss_pred             HHHHHHHHHHHHhccCCHHH
Confidence            88888888777777776654

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=99.03  E-value=1.1e-08  Score=99.15  Aligned_cols=233  Identities=17%  Similarity=0.138  Sum_probs=129.2

Q ss_pred             chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL  130 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~  130 (347)
                      |.+|..+-+..+++|+|++.+|...++.+--.+.+..++.+++......++.++    .++.|++         +..|..
T Consensus         4 s~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l----~~~~p~~---------~~~~~~   70 (359)
T TIGR00912         4 SSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKI----MSKFPEK---------NFSEIL   70 (359)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHH----HHHCCCC---------CHHHHH
Confidence            567888888999999999999998776442234445555566666666655443    3444422         245889


Q ss_pred             HhhhcccchhhhhhhHH-HHHHHHHHHHHHhhcccccc-cccccccchhhHhHH-HHHHHhhccCCCCchhHHHHHHHHH
Q 019025          131 DGLLGPYWKAVGLAFNC-TFLLFGSVIQLIACASNIYY-INDRLDKRTWTYIFG-ACCATTVFIPSFHNYRIWSFLGLGM  207 (347)
Q Consensus       131 ~~~~G~~~~~~~~~~~i-~~~~~g~v~~li~~~~~l~~-~~~~~~~~~~~~i~~-~~~~pl~~i~sl~~l~~~S~~g~~~  207 (347)
                      ++++||+.+.+ ..... .+....+...+-..++.+.. +.+  +...|.+... ++..-....+.++....++.+-...
T Consensus        71 ~~~~Gk~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~  147 (359)
T TIGR00912        71 SKYLGKILGRL-LSILFILYFFLIAAYLIRIFADFIKTYLLP--RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLII  147 (359)
T ss_pred             HHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            99999987775 22221 11111121111112222211 111  2233432221 1111122224455554444433222


Q ss_pred             HHHHHHHHHHhhhh-c-ccCCCCCCCCchhHHHHHhhhh-hHHHhcccccchHhHHHhcCCCccchhHHHHHHHHHHHHH
Q 019025          208 TTYTAWYLTIAAVV-H-GQVEGASHTAPTKLVLYFTGAT-NILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLT  284 (347)
Q Consensus       208 ~~~~~~~i~v~~~~-~-g~~~~v~~~~p~~~~~~f~a~g-~i~faF~gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~~ly  284 (347)
                      .+... .+.+.... + .+..+...-.+.++.+.+.+.- ...++|.|.....-...++|||++.+|....+...+..+|
T Consensus       148 ~i~~~-~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly  226 (359)
T TIGR00912       148 FLILF-ILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLY  226 (359)
T ss_pred             HHHHH-HHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHH
Confidence            11110 01111111 1 1111111111223445555543 7889999888888899999999999999999999999999


Q ss_pred             hhhhhhhhhhcCcccc
Q 019025          285 IPSATAVYWSFGDQLL  300 (347)
Q Consensus       285 ~~~g~~gY~afG~~~~  300 (347)
                      ...-+.....+|.+..
T Consensus       227 ~~~~~~~i~~lg~~~~  242 (359)
T TIGR00912       227 ILTTFVSISVFGGNVT  242 (359)
T ss_pred             HHHHHHHHheecHHHh
Confidence            9998888888887653

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PRK10655 potE putrescine transporter; Provisional

Probab=98.89  E-value=2.3e-07  Score=92.38  Aligned_cols=227  Identities=14%  Similarity=0.036  Sum_probs=119.9

Q ss_pred             chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL  130 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~  130 (347)
                      +.++...-.+.+++|+|++.+|..+++.|-. +++..++.+++..    +...+|.|...+.|+.+-.|        +-.
T Consensus         9 ~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~-~~~~w~i~~~~~~----~~a~~~aeL~~~~P~~GG~y--------~y~   75 (438)
T PRK10655          9 GVVQLTILTAVNMMGSGIIMLPTKLAQVGTI-SILSWLVTAVGSM----ALAYAFAKCGMFSRKSGGMG--------GYA   75 (438)
T ss_pred             cHHHHHHHHHHhhhhhHHHHhHHHHHHhhHH-HHHHHHHHHHHHH----HHHHHHHHHhhhCCCCCchH--------HHH
Confidence            4667778888999999999999999988852 4444444444433    33344567666666655433        455


Q ss_pred             HhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccc-cccccccc-hhhHhHHHHHHHhhccCCCCchhHHHHHHHHH
Q 019025          131 DGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYY-INDRLDKR-TWTYIFGACCATTVFIPSFHNYRIWSFLGLGM  207 (347)
Q Consensus       131 ~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~-~~~~~~~~-~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~  207 (347)
                      ++.+||+++.+ ....... ...+....-+...+.+.. ++...+.. .|..... +...+. .-|....|..+.+..+.
T Consensus        76 ~~~~G~~~gf~-~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~-~l~~~~-~ln~~g~~~~~~i~~i~  152 (438)
T PRK10655         76 EYAFGKSGNFM-ANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIG-VLWLCT-VANFGGARITGQISSVT  152 (438)
T ss_pred             HHHcCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH-HHHHHH-HHHHhCHHHHHHHHHHH
Confidence            68899987653 2222111 111111111111111111 11111111 1221111 111111 11233334433333322


Q ss_pred             HH---HHHHHHHHhhhhcccCCC----CCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHH
Q 019025          208 TT---YTAWYLTIAAVVHGQVEG----ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLY  279 (347)
Q Consensus       208 ~~---~~~~~i~v~~~~~g~~~~----v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~  279 (347)
                      ..   .....+.+......++++    ++..+...+..+..++....|+|.|-.....+-+|+|||+| .+|.+..+...
T Consensus       153 ~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~  232 (438)
T PRK10655        153 VWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLG  232 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHH
Confidence            21   111111122222111111    11111112345667788899999999999999999999986 89999999999


Q ss_pred             HHHHHhhhhhhhhh
Q 019025          280 VFTLTIPSATAVYW  293 (347)
Q Consensus       280 ~~~ly~~~g~~gY~  293 (347)
                      +.++|++.......
T Consensus       233 ~~~~Y~l~~~~~~~  246 (438)
T PRK10655        233 AAVIYIVSTNVIAG  246 (438)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999887655443

>TIGR00909 2A0306 amino acid transporter

Probab=98.88  E-value=2.5e-07  Score=91.80  Aligned_cols=230  Identities=8%  Similarity=0.049  Sum_probs=122.7

Q ss_pred             cchHHHHHHHhhhhhhhhhchHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHH
Q 019025           50 GSAWDAWFSCASNQVAQVLLTLPYSFSQ-MGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE  128 (347)
Q Consensus        50 gS~~~a~~nl~~~~iG~GiLsLP~af~~-~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~e  128 (347)
                      =+.++.+.-.+++++|.|++.+|..... .|.. ..+..++.+++....+    .++.|..++.|+.+-.|        +
T Consensus         5 l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a----~~~~el~~~~p~~Gg~y--------~   71 (429)
T TIGR00909         5 LGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIA----LVYAELAAMLPVAGSPY--------T   71 (429)
T ss_pred             ccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHH----HHHHHHHhhcCCCCcce--------e
Confidence            3567777888899999999999976554 3432 3334444444443333    34456676666554333        3


Q ss_pred             HhHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhccccccc-c---ccccc---------chh--hHhHHHHHHHhhccC
Q 019025          129 VLDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYI-N---DRLDK---------RTW--TYIFGACCATTVFIP  192 (347)
Q Consensus       129 v~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~-~---~~~~~---------~~~--~~i~~~~~~pl~~i~  192 (347)
                      -.++.+||+.+.+ ......+ .......+....++.+..+ .   ...+.         ..+  ..+...+.+-..-.+
T Consensus        72 ~~~~~~G~~~g~~-~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~  150 (429)
T TIGR00909        72 YAYEAMGELTAFI-IGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYL  150 (429)
T ss_pred             eHHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHh
Confidence            4456789887654 2222111 1111111111111111110 0   00010         011  111111122222233


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chh
Q 019025          193 SFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKY  271 (347)
Q Consensus       193 sl~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~  271 (347)
                      ..+..+.++.+.....+...+.+.+.++.+...++.+...|.+...++.++...+|+|.|........+|+|||+| .+|
T Consensus       151 g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~  230 (429)
T TIGR00909       151 GAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK  230 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH
Confidence            4555555554443322211111222233322222333223444567788899999999999999999999999975 799


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhh
Q 019025          272 IYLFATLYVFTLTIPSATAVYW  293 (347)
Q Consensus       272 v~~~s~~~~~~ly~~~g~~gY~  293 (347)
                      .+..++..+.++|++.......
T Consensus       231 ai~~~~~~~~v~Yil~~~~~~~  252 (429)
T TIGR00909       231 AIILSLIVVTLLYVLVAAVILG  252 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999988765543

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.86  E-value=2.7e-07  Score=92.01  Aligned_cols=230  Identities=12%  Similarity=0.024  Sum_probs=121.8

Q ss_pred             chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL  130 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~  130 (347)
                      +.++...-.+.+++|+|++.+|...++.|-. .++..++.++.    ...+..++.|...+.|+.+-.|        +-+
T Consensus         8 g~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~----~l~~al~~aEL~s~~P~~GG~y--------~y~   74 (435)
T PRK10435          8 GLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIG----AMSLAYVYARLATKNPQQGGPI--------AYA   74 (435)
T ss_pred             CHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCCChh--------HHH
Confidence            4566667788999999999999999988743 33333333333    3355556778888777655333        233


Q ss_pred             HhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHH-HHHHHhhccCCCCchhHHHHHHHHHH
Q 019025          131 DGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFG-ACCATTVFIPSFHNYRIWSFLGLGMT  208 (347)
Q Consensus       131 ~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~-~~~~pl~~i~sl~~l~~~S~~g~~~~  208 (347)
                      ++ +||+++.. ....... ...+.....+...+.+....+.........+.. +++..+.++ |....|..+.+..+..
T Consensus        75 ~~-~g~~~gf~-~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~l-n~~gvk~~~~i~~i~~  151 (435)
T PRK10435         75 GE-ISPAFGFQ-TGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFV-NMLGGTWVSRLTTIGL  151 (435)
T ss_pred             HH-HCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence            45 68876654 2222111 011211111111111111111111111111111 111111111 2222333333332222


Q ss_pred             ---HHHHHHHHHhhhhcccC----CCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHH
Q 019025          209 ---TYTAWYLTIAAVVHGQV----EGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYV  280 (347)
Q Consensus       209 ---~~~~~~i~v~~~~~g~~----~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~  280 (347)
                         +...+.+.+....+.++    +++....+.+...++.++....|+|.|-......-+|+|||+| .+|.+..+...+
T Consensus       152 ~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv  231 (435)
T PRK10435        152 VLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLA  231 (435)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHH
Confidence               11111111122211111    1222222345678888999999999999999999999999975 999999999999


Q ss_pred             HHHHhhhhhhhhhhcC
Q 019025          281 FTLTIPSATAVYWSFG  296 (347)
Q Consensus       281 ~~ly~~~g~~gY~afG  296 (347)
                      .++|+...........
T Consensus       232 ~ilYil~~~~~~~~~p  247 (435)
T PRK10435        232 GIIYIAATQVISGMFP  247 (435)
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999988776554443

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.80  E-value=6.7e-07  Score=89.37  Aligned_cols=234  Identities=12%  Similarity=0.027  Sum_probs=122.6

Q ss_pred             cchHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           50 GSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        50 gS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      -+.+++..-.+.+++|+|++.+|...++.|-. .+...++.++.    .....-++.|...+.|+.+-.|        +-
T Consensus        10 lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~----~l~~al~~aEL~s~~P~aGG~y--------~~   76 (445)
T PRK10644         10 VGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIG----ALGLSMVYAKMSSLDPSPGGSY--------AY   76 (445)
T ss_pred             cCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHHhhCCCCCChh--------HH
Confidence            35677888888999999999999999987632 22222222222    2233344567777777655444        23


Q ss_pred             hHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhH-HHHHHHhhc--cCCCCchhHHHHHHH
Q 019025          130 LDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIF-GACCATTVF--IPSFHNYRIWSFLGL  205 (347)
Q Consensus       130 ~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~-~~~~~pl~~--i~sl~~l~~~S~~g~  205 (347)
                      +++.+||.++.. ......+ ...+.........+...+..+..+.+....+. .+++..+..  ....|....+..+..
T Consensus        77 ~~~~~g~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~  155 (445)
T PRK10644         77 ARRCFGPFLGYQ-TNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT  155 (445)
T ss_pred             HHHHcCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            677899987653 2221111 11121111111111111111111222111111 122222222  222333333333222


Q ss_pred             HHHHHHHHHHHHhhhhcccC----CCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHH
Q 019025          206 GMTTYTAWYLTIAAVVHGQV----EGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYV  280 (347)
Q Consensus       206 ~~~~~~~~~i~v~~~~~g~~----~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~  280 (347)
                      ...+.....+.+........    ++++.++..++..+..++....|+|.|-......-+|+|||+| .+|.+..+...+
T Consensus       156 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~  235 (445)
T PRK10644        156 VLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA  235 (445)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHH
Confidence            21111111111222221111    1111111123445666788899999999999999999999976 899999999999


Q ss_pred             HHHHhhhhhhhhhhcCc
Q 019025          281 FTLTIPSATAVYWSFGD  297 (347)
Q Consensus       281 ~~ly~~~g~~gY~afG~  297 (347)
                      .++|++..+.....-++
T Consensus       236 ~v~Y~l~~~~~~~~~~~  252 (445)
T PRK10644        236 AVCYVLSSTAIMGMIPN  252 (445)
T ss_pred             HHHHHHHHHHHHhCCCH
Confidence            99999888764443433

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.78  E-value=6.1e-07  Score=85.81  Aligned_cols=231  Identities=16%  Similarity=0.148  Sum_probs=129.5

Q ss_pred             chHHHHHHHhhhhhhhhhchHHHHHHHh---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHH
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPYSFSQM---GMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF  127 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~af~~~---G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~  127 (347)
                      |..|...-+...++|.|++.+|...++.   ||+..++.    ++......++..++    .+|.+++         +..
T Consensus         3 S~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~----~~~~l~~~~l~~~l----~~~~p~~---------~l~   65 (320)
T PF03845_consen    3 SPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLG----GLIGLLLALLIYYL----LKRFPGK---------TLV   65 (320)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH----HHHHHHHHHHHHHH----HHHCCCC---------CHH
Confidence            5667788888999999999999998776   47643332    23333334443332    2333322         256


Q ss_pred             HHhHhhhcccchhhhhhhHHHHHHHHHHHHHHhhcccccccccccccchhhHhH-HHHHHHhhccCCCCchhHHHHHHHH
Q 019025          128 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDRLDKRTWTYIF-GACCATTVFIPSFHNYRIWSFLGLG  206 (347)
Q Consensus       128 ev~~~~~G~~~~~~~~~~~i~~~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~-~~~~~pl~~i~sl~~l~~~S~~g~~  206 (347)
                      |..++.+||+.++........+..+.+...+-..++.+... -.-+...|.+.. ..+..-..-.+.++.+...+-+-..
T Consensus        66 ~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~-~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~  144 (320)
T PF03845_consen   66 EISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTY-LLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFP  144 (320)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            89999999998875322222222222222221122211110 001223443322 2222233334556666554333222


Q ss_pred             HHHHHHHHHHHhhhhcccCCCCCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccchhHHHHHHHHHHHHHhh
Q 019025          207 MTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIP  286 (347)
Q Consensus       207 ~~~~~~~~i~v~~~~~g~~~~v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~~ly~~  286 (347)
                      ..+...+.+......+.+..+...-.+.++.+.+.+.-...+.|++-....-+...+|+|+|.+|....+...+..+|..
T Consensus       145 ~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~  224 (320)
T PF03845_consen  145 IFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLF  224 (320)
T ss_pred             HHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence            11111111111122111111111112345677788888888999988888889999999999999999999988888888


Q ss_pred             hhhhhhhhcCccc
Q 019025          287 SATAVYWSFGDQL  299 (347)
Q Consensus       287 ~g~~gY~afG~~~  299 (347)
                      .-+.....||.+.
T Consensus       225 ~~~~~i~vfG~~~  237 (320)
T PF03845_consen  225 IIFITIGVFGPEL  237 (320)
T ss_pred             HHHHHHHhcCHHH
Confidence            8888888899754

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.78  E-value=2.3e-06  Score=85.64  Aligned_cols=226  Identities=12%  Similarity=0.105  Sum_probs=121.3

Q ss_pred             chHHHHHHHhhhhhhhhhchHH-HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           51 SAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP-~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      +.++.++-.+.+++|+|++.+| .+.++.|-. +++..++.+++...    +..++.|...+.|..+-        ..+-
T Consensus        15 ~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~----~a~~~aEl~s~~P~~Gg--------~~~~   81 (452)
T TIGR01773        15 KTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVF----IMRMLGEMAVANPDTGS--------FSTY   81 (452)
T ss_pred             cHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCC--------HHHH
Confidence            4556668888999999999999 778888853 55555554444433    33445677766665432        2356


Q ss_pred             hHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHH-HHhhccCCCCchhHHHHHHHHH
Q 019025          130 LDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACC-ATTVFIPSFHNYRIWSFLGLGM  207 (347)
Q Consensus       130 ~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~-~pl~~i~sl~~l~~~S~~g~~~  207 (347)
                      +++.+||+++.. .+....+ ...+........+..+.+..+.  ...|.....++. .-..-....+....+.....+.
T Consensus        82 ~~~~~g~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~  158 (452)
T TIGR01773        82 ADDAIGRWAGFT-IGWLYWWFWVLVIPLEAIAAAGILQYWFPD--IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALI  158 (452)
T ss_pred             HHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            778899987654 2222111 1111111112222222222222  223433222211 1111122344444443332221


Q ss_pred             HHHHHHHHHHhh---hhcccC----CCCC----CC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHH
Q 019025          208 TTYTAWYLTIAA---VVHGQV----EGAS----HT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIY  273 (347)
Q Consensus       208 ~~~~~~~i~v~~---~~~g~~----~~v~----~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~  273 (347)
                      -+.....+++..   ...+.+    .+.+    ++  .|+.+..++.++....|+|.|-.....+-+|+|||+| .+|.+
T Consensus       159 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi  238 (452)
T TIGR01773       159 KVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRAT  238 (452)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHH
Confidence            111110111111   111111    0111    11  1344556888999999999999999999999999986 88998


Q ss_pred             HHHHHHHHHHHhhhhhhhh
Q 019025          274 LFATLYVFTLTIPSATAVY  292 (347)
Q Consensus       274 ~~s~~~~~~ly~~~g~~gY  292 (347)
                      ..+...+..+|+.......
T Consensus       239 ~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       239 NSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHe
Confidence            8777778888887654433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK11021 putative transporter; Provisional

Probab=98.77  E-value=1e-06  Score=87.05  Aligned_cols=222  Identities=9%  Similarity=0.065  Sum_probs=116.3

Q ss_pred             hHHHHHHHhhhhhhhhhchHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025           52 AWDAWFSCASNQVAQVLLTLPYSFSQM-GMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL  130 (347)
Q Consensus        52 ~~~a~~nl~~~~iG~GiLsLP~af~~~-G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~  130 (347)
                      .+++..-.+.+++|+|++.+|-...+. |- ..++..++.+++    ......++.|...+.|+++-.|        .-.
T Consensus         3 ~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~----~~~~al~~aEl~s~~P~aGG~y--------~y~   69 (410)
T PRK11021          3 LWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILL----IFPIAIVFARLGRHFPHAGGPA--------HFV   69 (410)
T ss_pred             HHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHH----HHHHHHHHHHHHHhCCCCCCHH--------HhH
Confidence            466777788999999999998766655 52 233444443333    3333445567777777655433        345


Q ss_pred             HhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 019025          131 DGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTT  209 (347)
Q Consensus       131 ~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~  209 (347)
                      ++.+||+++.. ....... ...+.........+.+....+..+...+.+...+ ...+.++ |+...|..+-+..+.++
T Consensus        70 ~~~~G~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l-n~~Gv~~~~~~~~~~~~  146 (410)
T PRK11021         70 GMAFGPRLGRV-TGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLAELLT-LALLWLL-NLRGASSSANLQTVIAL  146 (410)
T ss_pred             HHHhCchhHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHH-HHHHHHH-HHhhHHHHHHHHHHHHH
Confidence            67899987754 2222111 1111100111111111111111111112111111 1111111 22223333332222221


Q ss_pred             HHHHHHHHhhhhccc--CCCCCCC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHH
Q 019025          210 YTAWYLTIAAVVHGQ--VEGASHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLT  284 (347)
Q Consensus       210 ~~~~~i~v~~~~~g~--~~~v~~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly  284 (347)
                      .....+ +.....+.  ..+....  .+.++..++.++....|+|.|-......-+|+|||+| .+|.+..+...+.++|
T Consensus       147 ~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lY  225 (410)
T PRK11021        147 LIVALV-VAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVY  225 (410)
T ss_pred             HHHHHH-HHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHH
Confidence            111111 11111121  1122111  2345677888999999999999999999999999976 8999999999999999


Q ss_pred             hhhhhh
Q 019025          285 IPSATA  290 (347)
Q Consensus       285 ~~~g~~  290 (347)
                      ++....
T Consensus       226 il~~~~  231 (410)
T PRK11021        226 WACTVV  231 (410)
T ss_pred             HHHHHH
Confidence            988765

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.67  E-value=2.6e-06  Score=85.80  Aligned_cols=235  Identities=10%  Similarity=0.042  Sum_probs=123.1

Q ss_pred             CcchHHHHHHHhhhhhhhhhchHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccchhhcH
Q 019025           49 GGSAWDAWFSCASNQVAQVLLTLPYSFSQMGMLS-GILLQIFYGFLGSWTAYLISVLYVEYRSRKEK-ENVSFKNHVIQW  126 (347)
Q Consensus        49 ggS~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~-Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~-~~~~~~~~~~~y  126 (347)
                      .-+.+++....+++++|+|++.+|...++.|=.. .++..++.+++...    ...+|.|...+.|+ .+-.|       
T Consensus         8 ~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~----~al~~aEl~s~~P~~sGG~y-------   76 (473)
T TIGR00905         8 KLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLA----LAFVFAILATKKPELDGGIY-------   76 (473)
T ss_pred             CccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHH----HHHHHHHHHhhCCCCCCChh-------
Confidence            3467888899999999999999999988755211 12333333333332    33456677777776 44433       


Q ss_pred             HHHhHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhccccccccccc--ccchhhHhHHHH-H--HHhhccCCCCchhHH
Q 019025          127 FEVLDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRL--DKRTWTYIFGAC-C--ATTVFIPSFHNYRIW  200 (347)
Q Consensus       127 ~ev~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~--~~~~~~~i~~~~-~--~pl~~i~sl~~l~~~  200 (347)
                       +-.++.+||+++.. .+....+ ...+...+.....+.+.++.+..  +......+.+.+ .  .-..-.+..+..+.+
T Consensus        77 -~y~~~~~G~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i  154 (473)
T TIGR00905        77 -AYAREGFGPYIGFM-SGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFI  154 (473)
T ss_pred             -hhHHhHcccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence             45578899987764 2222111 11111111111111111111111  111111112211 1  112223344444444


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh--cccCC--CC-CCCCc---hhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccchhH
Q 019025          201 SFLGLGMTTYTAWYLTIAAVV--HGQVE--GA-SHTAP---TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYI  272 (347)
Q Consensus       201 S~~g~~~~~~~~~~i~v~~~~--~g~~~--~v-~~~~p---~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v  272 (347)
                      ..+.....+...+.+.+..+.  ++...  +. .+..|   ..+..++.++....|+|.|-.....+-+|+||+++.+|.
T Consensus       155 ~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPra  234 (473)
T TIGR00905       155 NTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKA  234 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHH
Confidence            333322211111111122221  21110  11 11112   234567778889999999999999999999995558999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcC
Q 019025          273 YLFATLYVFTLTIPSATAVYWSFG  296 (347)
Q Consensus       273 ~~~s~~~~~~ly~~~g~~gY~afG  296 (347)
                      +..+..++.++|+..........+
T Consensus       235 i~~~~~i~~~~Yil~~~~~~~~~~  258 (473)
T TIGR00905       235 TVLGTLGALVIYILITLLSLGVLP  258 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcC
Confidence            999999999999888766443333

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.57  E-value=5.4e-06  Score=85.30  Aligned_cols=233  Identities=15%  Similarity=0.181  Sum_probs=125.9

Q ss_pred             cCcchHHHHHHHhhhhhhhhhchHHHHH--HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhc
Q 019025           48 HGGSAWDAWFSCASNQVAQVLLTLPYSF--SQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ  125 (347)
Q Consensus        48 ~ggS~~~a~~nl~~~~iG~GiLsLP~af--~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~  125 (347)
                      +.=+.+|...--+..++|+|+..+|-..  ...|-. .++..++.++.    +.+...||.|+..+.|+.+-.|.     
T Consensus        28 r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~----~l~~al~yaElas~~P~sGg~Y~-----   97 (557)
T TIGR00906        28 RCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLA----AVLSGFCYAEFGARVPKAGSAYL-----   97 (557)
T ss_pred             hcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHH----HHHHHHHHHHHHHhCCCCCccee-----
Confidence            3346777778888899999999999654  347743 23333333333    33345567888888887665552     


Q ss_pred             HHHHhHhhhcccchhhhhhhHHHH-HHHH-H-H-----HHHHh-hcccccc-------cc-cccccc-hhhHhHHHHHHH
Q 019025          126 WFEVLDGLLGPYWKAVGLAFNCTF-LLFG-S-V-----IQLIA-CASNIYY-------IN-DRLDKR-TWTYIFGACCAT  187 (347)
Q Consensus       126 y~ev~~~~~G~~~~~~~~~~~i~~-~~~g-~-v-----~~li~-~~~~l~~-------~~-~~~~~~-~~~~i~~~~~~p  187 (347)
                      |   .+..+|+.++.+ .+.+..+ ...+ + +     .|+-. ....+..       ++ +..... .+..+..++.+-
T Consensus        98 y---~~~~~G~~~gfi-~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~  173 (557)
T TIGR00906        98 Y---SYVTVGELWAFI-TGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLA  173 (557)
T ss_pred             e---HHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHH
Confidence            3   345678876654 2222211 1111 1 1     11110 1110100       00 001111 111111111122


Q ss_pred             hhccCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC--------CCCchhHHHHHhhhhhHHHhcccccchHhH
Q 019025          188 TVFIPSFHNYRIWSFLGLGMTTYTAWYLTIAAVVHGQVEGAS--------HTAPTKLVLYFTGATNILYTFGGHAVTVEI  259 (347)
Q Consensus       188 l~~i~sl~~l~~~S~~g~~~~~~~~~~i~v~~~~~g~~~~v~--------~~~p~~~~~~f~a~g~i~faF~gh~~~~~I  259 (347)
                      ....+..+..++++.+..+..+.....+++.+..+....++.        ...|..+.+++.++....|+|.|-..+...
T Consensus       174 ~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~  253 (557)
T TIGR00906       174 VLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATT  253 (557)
T ss_pred             HHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHh
Confidence            223344555555544333221211112223333333222222        112334567888999999999999999999


Q ss_pred             HHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhh
Q 019025          260 MHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWS  294 (347)
Q Consensus       260 ~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~a  294 (347)
                      -+|+|||+| .++.+..+..++.++|+++.+.--..
T Consensus       254 aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~  289 (557)
T TIGR00906       254 GEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLM  289 (557)
T ss_pred             HHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999987 89999999999999999887654433

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.57  E-value=2.9e-06  Score=83.98  Aligned_cols=233  Identities=14%  Similarity=0.158  Sum_probs=127.4

Q ss_pred             chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLG-SWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~-~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      +.+++..-.++.++|+|+...| ..++.|.. .++..++.+++. .....    +|.|+.++.++++-.|        .-
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~----~~~el~~~~p~~GG~y--------~~   67 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIAL----SYAELSSAYPSAGGIY--------VW   67 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHH----HHHHHHTTTTSSTTHH--------HH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHH----HHHHHhccCCCcCeee--------eh
Confidence            4677888888999999999999 77778865 444443333333 22222    3457766666554433        45


Q ss_pred             hHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccc-cccccccchh-hHhHHHH---HHHhhccCCCCchhHHHHH
Q 019025          130 LDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYY-INDRLDKRTW-TYIFGAC---CATTVFIPSFHNYRIWSFL  203 (347)
Q Consensus       130 ~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~-~~~~~~~~~~-~~i~~~~---~~pl~~i~sl~~l~~~S~~  203 (347)
                      .++++||+++.+ ......+ .............+.+.+ ++...+...| ..+.+++   .....-.+..|..++...+
T Consensus        68 ~~~~~g~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~  146 (426)
T PF13520_consen   68 VSRAFGPFWGFI-VGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNI  146 (426)
T ss_dssp             HHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             hhhcccccchhc-ccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhh
Confidence            677789987765 2222211 111111122222222222 2222222122 1122221   1222223334444444433


Q ss_pred             HHHHHH-HHHHHHHHhhhhcccCCC-------CCCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccchhHHHH
Q 019025          204 GLGMTT-YTAWYLTIAAVVHGQVEG-------ASHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLF  275 (347)
Q Consensus       204 g~~~~~-~~~~~i~v~~~~~g~~~~-------v~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v~~~  275 (347)
                      ..+..+ ....++.+.++.....+.       .+...|+.+...+.+++..+|+|.|-.......+|+|| ++.+|.+..
T Consensus       147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~  225 (426)
T PF13520_consen  147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIII  225 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHH
T ss_pred             hhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeeccc
Confidence            332222 121122233333221110       11112333334678889999999999999999999998 789999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhcCccc
Q 019025          276 ATLYVFTLTIPSATAVYWSFGDQL  299 (347)
Q Consensus       276 s~~~~~~ly~~~g~~gY~afG~~~  299 (347)
                      +...+.++|++.........+++.
T Consensus       226 ~~~~~~i~y~l~~~~~~~~~~~~~  249 (426)
T PF13520_consen  226 SIIIVAIIYILFSIALLGALPDDE  249 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTHCH
T ss_pred             chhHHHHHHhhhhheeeecccchh
Confidence            999999999999887777766654

...

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.55  E-value=1.1e-05  Score=81.29  Aligned_cols=233  Identities=8%  Similarity=0.038  Sum_probs=119.9

Q ss_pred             chHHHHHHHhhhhhhhhhchHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccccchhhcHHH
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPYSFSQM-GMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKEN-VSFKNHVIQWFE  128 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~af~~~-G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~-~~~~~~~~~y~e  128 (347)
                      +.++.+.-.+.+++|+|++.+|....+. |....++..++.++....    +..++.|...+.|+.+ -.|        +
T Consensus         4 gl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~----~al~~aeL~s~~P~~gGG~y--------~   71 (468)
T TIGR03810         4 GLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLA----LAFSFQNLANKKPELDGGVY--------S   71 (468)
T ss_pred             CHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHH----HHHHHHHHHhhCCCCCCChh--------h
Confidence            5677888888999999999999886644 422223334444444433    3344567777766532 223        3


Q ss_pred             HhHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhccccccccccc--ccchhhHhHHH-HH--HHhhccCCCCchhHHHH
Q 019025          129 VLDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRL--DKRTWTYIFGA-CC--ATTVFIPSFHNYRIWSF  202 (347)
Q Consensus       129 v~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~--~~~~~~~i~~~-~~--~pl~~i~sl~~l~~~S~  202 (347)
                      -+++.+||+++.. ....... ...+...+.....+.+.+..+..  +...+..+.+. +.  +-..-.+..+..+.++.
T Consensus        72 y~~~~fG~~~gf~-~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~  150 (468)
T TIGR03810        72 YAKAGFGPFMGFI-SAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINT  150 (468)
T ss_pred             hHHhHcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            4678899986654 2221111 01111111111111111211111  12222222221 11  11111233444444333


Q ss_pred             HHHHHHHHHHHHHHHhhh--hcccC--CC-CCCC--C---chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCccchhH
Q 019025          203 LGLGMTTYTAWYLTIAAV--VHGQV--EG-ASHT--A---PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYI  272 (347)
Q Consensus       203 ~g~~~~~~~~~~i~v~~~--~~g~~--~~-v~~~--~---p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~f~~v  272 (347)
                      +..+.-+.....+++.++  .++..  ++ .+..  .   ...+..+..++....|+|.|-.....+-+|+|||++.+|.
T Consensus       151 i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~a  230 (468)
T TIGR03810       151 ITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKA  230 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHH
Confidence            322211111111112111  12111  01 1110  1   1123455578889999999999988888999998889999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcC
Q 019025          273 YLFATLYVFTLTIPSATAVYWSFG  296 (347)
Q Consensus       273 ~~~s~~~~~~ly~~~g~~gY~afG  296 (347)
                      +..+...+.++|+...+..+-..+
T Consensus       231 i~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       231 TVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcC
Confidence            999999999999998877665544

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.54  E-value=1.9e-05  Score=79.18  Aligned_cols=226  Identities=12%  Similarity=0.083  Sum_probs=116.1

Q ss_pred             cchHHHHHHHhhhhhhhhhchHHHH-HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHH
Q 019025           50 GSAWDAWFSCASNQVAQVLLTLPYS-FSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE  128 (347)
Q Consensus        50 gS~~~a~~nl~~~~iG~GiLsLP~a-f~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~e  128 (347)
                      =+.++.+.-.+.+++|+|++.+|.. .+.+|-. .++..++.+++....+.    ++.|...+.|+.+-.|        +
T Consensus        11 L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~----~~aEl~s~~P~~Gg~y--------~   77 (457)
T PRK10580         11 LSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMR----ALGEMSVHNPAASSFS--------R   77 (457)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCCHH--------H
Confidence            3566777888899999999999876 5556642 34444444444444433    4467777666554333        3


Q ss_pred             HhHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHH
Q 019025          129 VLDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGM  207 (347)
Q Consensus       129 v~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~  207 (347)
                      -+++.+||.++.+ ......+ ....+.......+..+....+......|.+.+.+++.-+ -.+..+.......+..+.
T Consensus        78 y~~~~~G~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-n~~gv~~~~~~~~~~~~~  155 (457)
T PRK10580         78 YAQENLGPLAGYI-TGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAV-NLMSVKVFGELEFWFSFF  155 (457)
T ss_pred             HHHHHcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-HHccchhHHHHHHHHHHH
Confidence            5577889987654 2222211 111111111122222222222222222322222222222 223334443333221111


Q ss_pred             HHHHHHHHHHh-------hhhcc-cCCCC----CCC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhH
Q 019025          208 TTYTAWYLTIA-------AVVHG-QVEGA----SHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYI  272 (347)
Q Consensus       208 ~~~~~~~i~v~-------~~~~g-~~~~v----~~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v  272 (347)
                      .+...+.+++.       ...++ .+.+.    +.+  .|..+..++.++....|+|.|-......-+|+|||+| .++.
T Consensus       156 ~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrA  235 (457)
T PRK10580        156 KVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRA  235 (457)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHH
Confidence            11000011111       11111 11111    111  1334557788889999999999999999999999998 7888


Q ss_pred             HHHHHHHHHHHHhhhhhh
Q 019025          273 YLFATLYVFTLTIPSATA  290 (347)
Q Consensus       273 ~~~s~~~~~~ly~~~g~~  290 (347)
                      +..+...+.++|+.....
T Consensus       236 i~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        236 INSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            877776677777666443

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.49  E-value=1.7e-05  Score=79.87  Aligned_cols=62  Identities=6%  Similarity=-0.010  Sum_probs=50.6

Q ss_pred             hHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 019025          235 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFG  296 (347)
Q Consensus       235 ~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG  296 (347)
                      ....++.++....|+|.|-..+...-+|+|||+| .+|.+..+...+.++|+......-...+
T Consensus       204 g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p  266 (471)
T PRK11387        204 GGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIP  266 (471)
T ss_pred             cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            3456777888899999999999999999999987 8999998888888888887665433333

>PRK15049 L-asparagine permease; Provisional

Probab=98.48  E-value=2.7e-05  Score=79.18  Aligned_cols=232  Identities=11%  Similarity=0.069  Sum_probs=116.3

Q ss_pred             chHHHHHHHhhhhhhhhhchHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~-af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      +.++..+-.+.++||+|++..|. +.+++|-. +++..++.+++.    .++..++.|...+.|+.+-.|        .-
T Consensus        31 ~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~-~il~~li~~i~~----~~v~~slaELas~~P~aGg~y--------~y   97 (499)
T PRK15049         31 GNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA-LALVYLICGLFS----FFILRALGELVLHRPSSGSFV--------SY   97 (499)
T ss_pred             CHhHhHHHhhhccccchHHHhhHHHHHhcCCH-HHHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCHH--------HH
Confidence            44555577889999999988777 77778852 444444444433    333344567777776554322        45


Q ss_pred             hHhhhcccchhhhhhhHHHHH-HHHHHHHHHhhcccccccccccccchhhHhHHHHHH-HhhccCCCCchhHHHHHHH-H
Q 019025          130 LDGLLGPYWKAVGLAFNCTFL-LFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCA-TTVFIPSFHNYRIWSFLGL-G  206 (347)
Q Consensus       130 ~~~~~G~~~~~~~~~~~i~~~-~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~-pl~~i~sl~~l~~~S~~g~-~  206 (347)
                      +++.+||+++.+ .+....+. ...+.......+....+.....+...|.....++.+ -+.-....+.+..+..+.. +
T Consensus        98 ~~~~~G~~~gf~-~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~i  176 (499)
T PRK15049         98 AREFLGEKAAYV-AGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALI  176 (499)
T ss_pred             HHHHhCcHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567889976643 22221110 011111111111111121111122345432222111 1111122233333322211 1


Q ss_pred             HHHHHHHHHHH--hhhhcccCC-----CCC----CC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhH
Q 019025          207 MTTYTAWYLTI--AAVVHGQVE-----GAS----HT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYI  272 (347)
Q Consensus       207 ~~~~~~~~i~v--~~~~~g~~~-----~v~----~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v  272 (347)
                      ..+.+..++.+  ..+..+.+.     +..    +.  .|..+..++.++....|+|.|-..+...-+|+|||+| .+|.
T Consensus       177 ki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrA  256 (499)
T PRK15049        177 KVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKA  256 (499)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHH
Confidence            11111111111  111112111     111    11  1334455666777899999999999999999999987 8999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhcC
Q 019025          273 YLFATLYVFTLTIPSATAVYWSFG  296 (347)
Q Consensus       273 ~~~s~~~~~~ly~~~g~~gY~afG  296 (347)
                      +..++..+.++|+..........+
T Consensus       257 i~~~~~~i~~~yi~~~~~~~~~~p  280 (499)
T PRK15049        257 INSVIWRIGLFYVGSVVLLVMLLP  280 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHheecc
Confidence            988888888878776655443333

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.48  E-value=1.9e-05  Score=79.57  Aligned_cols=230  Identities=12%  Similarity=0.100  Sum_probs=116.0

Q ss_pred             cCcchHHHHHHHhhhhhhhhhchHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcH
Q 019025           48 HGGSAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW  126 (347)
Q Consensus        48 ~ggS~~~a~~nl~~~~iG~GiLsLP~-af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y  126 (347)
                      +.-+.++...-.+.++||+|++-.|. +++++|. ..++..++.+++......    ++.|.....+..    .    ++
T Consensus        20 r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~----s~aEl~s~~~~~----~----~~   86 (469)
T PRK11049         20 RNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMR----AMGELLLSNLEY----K----SF   86 (469)
T ss_pred             ccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHH----HHHHHHHhcCCC----C----cH
Confidence            33455556677789999999999765 7888886 344444455554433333    334554432221    1    13


Q ss_pred             HHHhHhhhcccchhhhhhhHHHHHH-HHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHH
Q 019025          127 FEVLDGLLGPYWKAVGLAFNCTFLL-FGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL  205 (347)
Q Consensus       127 ~ev~~~~~G~~~~~~~~~~~i~~~~-~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~  205 (347)
                      .+.+++.+||.++.+ .+....+.. .+........+..+.+..+......+..++..++..+.. ...+....+..+..
T Consensus        87 ~~ya~~~~g~~~gf~-~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~~iN~-~g~~~~~~i~~~~~  164 (469)
T PRK11049         87 SDFASDLLGPWAGYF-TGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLLSLNL-ATVKMFGEMEFWFA  164 (469)
T ss_pred             HHHHHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence            467888999986654 222221111 111111111222222222222221222221111222211 22233333332222


Q ss_pred             HHHHHHHHHHHHhhhh---cc--cCC----CC----CCC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-c
Q 019025          206 GMTTYTAWYLTIAAVV---HG--QVE----GA----SHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F  269 (347)
Q Consensus       206 ~~~~~~~~~i~v~~~~---~g--~~~----~v----~~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f  269 (347)
                      +.-+.....+++.++.   .+  .+.    +.    +.+  .|..+..++.++....|+|.|-..+...-+|+|||+| .
T Consensus       165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i  244 (469)
T PRK11049        165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSL  244 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHH
Confidence            1111111111112111   11  010    11    111  1344556888999999999999999999999999987 7


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhh
Q 019025          270 KYIYLFATLYVFTLTIPSATAVY  292 (347)
Q Consensus       270 ~~v~~~s~~~~~~ly~~~g~~gY  292 (347)
                      +|.+..+...+.++|++.....+
T Consensus       245 Prai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        245 PRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHe
Confidence            88887666667778876665544

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.45  E-value=3.7e-05  Score=76.95  Aligned_cols=214  Identities=11%  Similarity=0.090  Sum_probs=111.3

Q ss_pred             hhhhhhhhhchHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhcccc
Q 019025           60 ASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYW  138 (347)
Q Consensus        60 ~~~~iG~GiLsLP~-af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~~  138 (347)
                      +.++||+|++-.|- +.++.|-. .++..++.+++....    ..++.|...+.|+.+-.|        +-+++.+||++
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~----al~~aEL~s~~P~~Gg~y--------~y~~~~~G~~~   70 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMI----MRMLAEMAVATPDTGSFS--------TYADKAIGRWA   70 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHH----HHHHHHHHHhCCCCCCHH--------HHHHHHcChHH
Confidence            45789999999887 78888852 444444444444333    345567777766554322        45668899987


Q ss_pred             hhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHH--HHHHHhhccCCCCchhHHHHHHHHHHHHHHHHH
Q 019025          139 KAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFG--ACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYL  215 (347)
Q Consensus       139 ~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~--~~~~pl~~i~sl~~l~~~S~~g~~~~~~~~~~i  215 (347)
                      +.. .+....+ ............+..+.+..+..  ..|.+...  ++...+. ....+..+.+..+..+.-+...+.+
T Consensus        71 gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~  146 (446)
T PRK10197         71 GYT-IGWLYWWFWVLVIPLEANIAAMILHSWVPGI--PIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAF  146 (446)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccC--cHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHH
Confidence            754 2222211 01111001111111111111211  22322221  1111111 2233333333222221111111111


Q ss_pred             HHhhh--hcccC-----CCC----CCC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHH
Q 019025          216 TIAAV--VHGQV-----EGA----SHT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVF  281 (347)
Q Consensus       216 ~v~~~--~~g~~-----~~v----~~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~  281 (347)
                      ++.++  ..|..     .+.    +..  .|..+..++.++....|+|.|-..+...-+|+|||+| .+|.+..++..+.
T Consensus       147 ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~  226 (446)
T PRK10197        147 IFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRIS  226 (446)
T ss_pred             HHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence            11111  12211     111    111  1344567889999999999999999999999999987 8899888888888


Q ss_pred             HHHhhhhhh
Q 019025          282 TLTIPSATA  290 (347)
Q Consensus       282 ~ly~~~g~~  290 (347)
                      ++|+...+.
T Consensus       227 i~Yil~~~~  235 (446)
T PRK10197        227 IFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHH
Confidence            888876555

>TIGR00908 2A0305 ethanolamine permease

Probab=98.44  E-value=2e-05  Score=78.67  Aligned_cols=55  Identities=13%  Similarity=0.052  Sum_probs=46.5

Q ss_pred             hHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhh
Q 019025          235 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSAT  289 (347)
Q Consensus       235 ~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~  289 (347)
                      .+..++.++....|+|.|.......-+|+|||+| .+|.+..+..++.++|+....
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       189 AYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHH
Confidence            3456778888899999999999999999999976 899999888888888876643

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.44  E-value=2.4e-05  Score=78.13  Aligned_cols=230  Identities=11%  Similarity=0.089  Sum_probs=117.2

Q ss_pred             CcchHHHHHHHhhhhhhhhhchHHHHH-HHhchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcH
Q 019025           49 GGSAWDAWFSCASNQVAQVLLTLPYSF-SQMGML-SGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW  126 (347)
Q Consensus        49 ggS~~~a~~nl~~~~iG~GiLsLP~af-~~~G~v-~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y  126 (347)
                      .-+.++++.-.+..++|+|++..|... ++.|-. ..++..++.+++...    ...+|.|...+.|+.+-.|.     |
T Consensus         9 ~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~----~al~~aEl~s~~P~~GG~y~-----y   79 (445)
T PRK11357          9 KLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIP----QMCVYAELSTAYPENGADYV-----Y   79 (445)
T ss_pred             cccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCCCCCcee-----e
Confidence            345667777777888999999999874 455632 223333444444333    33345677777776655442     3


Q ss_pred             HHHhHhhhcccchhhhhhhHHHHH--HHHHHHHHHhhcccccccccccccchhhHhHHHHHHHh--hccCCCCchhHHHH
Q 019025          127 FEVLDGLLGPYWKAVGLAFNCTFL--LFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATT--VFIPSFHNYRIWSF  202 (347)
Q Consensus       127 ~ev~~~~~G~~~~~~~~~~~i~~~--~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl--~~i~sl~~l~~~S~  202 (347)
                         .++.+||.++.. ........  ..+...+....++.+.+..+ .+...+..+..++..-+  .-.+..+....+..
T Consensus        80 ---~~~~~g~~~gf~-~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~  154 (445)
T PRK11357         80 ---LKNAGSRPLAFL-SGWASFWANDAPSLSIMALAIVSNLGFLTP-IDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQT  154 (445)
T ss_pred             ---HHHhcCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence               346788876643 22221110  11111122222222222111 11111111111111111  11233333333333


Q ss_pred             HHHHHHHHHHHHHHHhhhh--cccC--CCCCCC-Cc-hhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHH
Q 019025          203 LGLGMTTYTAWYLTIAAVV--HGQV--EGASHT-AP-TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLF  275 (347)
Q Consensus       203 ~g~~~~~~~~~~i~v~~~~--~g~~--~~v~~~-~p-~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~  275 (347)
                      +..+..+.....+++.++.  ++..  ++.+.. .. .++..++.++....|+|.|-......-+|+|||+| .+|.+..
T Consensus       155 ~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~  234 (445)
T PRK11357        155 LITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIG  234 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHH
Confidence            2222111111112222221  2211  010110 11 12456778889999999999999999999999987 7999999


Q ss_pred             HHHHHHHHHhhhhhhhh
Q 019025          276 ATLYVFTLTIPSATAVY  292 (347)
Q Consensus       276 s~~~~~~ly~~~g~~gY  292 (347)
                      ++..+.++|++......
T Consensus       235 ~~~i~~~~Y~l~~~~~~  251 (445)
T PRK11357        235 SCLLVLVLYTLLALVIS  251 (445)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988766433

>PRK10249 phenylalanine transporter; Provisional

Probab=98.43  E-value=3.3e-05  Score=77.60  Aligned_cols=231  Identities=12%  Similarity=0.045  Sum_probs=118.9

Q ss_pred             chHHHHHHHhhhhhhhhhchHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPYSFS-QMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~af~-~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      +.++..+-.+.+++|+|++..|-... ++|-. .++..++.+++.    .++..++.|...+.|..+-.        .+-
T Consensus        24 ~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~~----~~~~~~~aEl~~~~P~~Gg~--------~~y   90 (458)
T PRK10249         24 HNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGIIA----FLIMRQLGEMVVEEPVSGSF--------AHF   90 (458)
T ss_pred             cHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCH--------HHH
Confidence            34555577788999999999776554 55642 444444444443    33344566777777765432        246


Q ss_pred             hHhhhcccchhhhhhhHHHHHH-HHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHH-HHH
Q 019025          130 LDGLLGPYWKAVGLAFNCTFLL-FGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG-LGM  207 (347)
Q Consensus       130 ~~~~~G~~~~~~~~~~~i~~~~-~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g-~~~  207 (347)
                      +++.+|++++.. .+....+.. ..........+..+.++.+......+..++..+...+. .+..+..+.+..+. .+-
T Consensus        91 ~~~~~g~~~gf~-~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~~~ik  168 (458)
T PRK10249         91 AYKYWGPFAGFL-SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVN-LVNVRLYGETEFWFALIK  168 (458)
T ss_pred             HHHHhChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH-HhcchhhhhHHHHHHHHH
Confidence            678899987754 322221111 11122222222222222222222122222222222222 22333333332221 111


Q ss_pred             HHH-HHHHH-HHhhhhcccC---CCCC----CC--CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHH
Q 019025          208 TTY-TAWYL-TIAAVVHGQV---EGAS----HT--APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLF  275 (347)
Q Consensus       208 ~~~-~~~~i-~v~~~~~g~~---~~v~----~~--~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~  275 (347)
                      .+. ..+++ .+..+..+.+   .+.+    +.  .|..+..++.++....|+|.|-......-+|+|||+| .+|.+..
T Consensus       169 v~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~  248 (458)
T PRK10249        169 VLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQ  248 (458)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHH
Confidence            110 11000 0111111111   1111    11  1345667788999999999999999999999999987 7999988


Q ss_pred             HHHHHHHHHhhhhhhhhhhcC
Q 019025          276 ATLYVFTLTIPSATAVYWSFG  296 (347)
Q Consensus       276 s~~~~~~ly~~~g~~gY~afG  296 (347)
                      +...+.++|+..........+
T Consensus       249 ~~~~~~~~y~~~~~~~~~~~~  269 (458)
T PRK10249        249 VVYRILLFYIGSLVVLLALYP  269 (458)
T ss_pred             HHHHHHHHHHHHHHHHheecc
Confidence            888888888775554443333

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.39  E-value=7.9e-06  Score=88.62  Aligned_cols=217  Identities=14%  Similarity=0.160  Sum_probs=118.0

Q ss_pred             HHHhhhhhhhhhch-HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccccccccchhhcHHHHhHhhh
Q 019025           57 FSCASNQVAQVLLT-LPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSR-KEKENVSFKNHVIQWFEVLDGLL  134 (347)
Q Consensus        57 ~nl~~~~iG~GiLs-LP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~-~~~~~~~~~~~~~~y~ev~~~~~  134 (347)
                      .-++.+++|+|+.- +++...++|...+++..++.++++..|+.-+    .+...+ .++.+-.|        ....+++
T Consensus        86 ~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~----seiaTng~p~aGG~Y--------~yisral  153 (953)
T TIGR00930        86 VPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSM----SAIATNGVVKGGGAY--------YLISRSL  153 (953)
T ss_pred             HhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCccHHH--------HHHHHHh
Confidence            45578899999765 8888889997777777777777777777644    455554 44444333        3567788


Q ss_pred             cccchhhhhhhHHHH-HHHHHHHHHHhhccccccc-c--------ccc-ccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025          135 GPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYI-N--------DRL-DKRTWTYIFGACCATTVFIPSFHNYRIWSFL  203 (347)
Q Consensus       135 G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~-~--------~~~-~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~  203 (347)
                      |+.++.. +++...+ ...++..+.+..++.+..+ .        +.. +.+.+..+..+++..++    +...++.+-+
T Consensus       154 Gp~~Gf~-iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In----~~Gvk~~ak~  228 (953)
T TIGR00930       154 GPEFGGS-IGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS----FAGMEWENKA  228 (953)
T ss_pred             CcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH----HhhHHHHHHH
Confidence            9976543 2222211 1122233333222222111 0        001 12222222222222222    2234444444


Q ss_pred             HHHHHHH--HHHH-HHHhhhhccc-CC--CC--------CCC-Cc---hhHHHHHhhhhhHHHhcccccchHhHHHhcCC
Q 019025          204 GLGMTTY--TAWY-LTIAAVVHGQ-VE--GA--------SHT-AP---TKLVLYFTGATNILYTFGGHAVTVEIMHAMWK  265 (347)
Q Consensus       204 g~~~~~~--~~~~-i~v~~~~~g~-~~--~v--------~~~-~p---~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~  265 (347)
                      ..+.++.  ++++ +++.++.... .+  +.        ..+ .|   .....++..++++.+||.|......+-.|+|+
T Consensus       229 q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKn  308 (953)
T TIGR00930       229 QVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKD  308 (953)
T ss_pred             HHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4332221  1111 1111111110 00  00        000 11   11122566778888899999999999999999


Q ss_pred             Ccc-chhHHHHHHHHHHHHHhhhhhh
Q 019025          266 PQK-FKYIYLFATLYVFTLTIPSATA  290 (347)
Q Consensus       266 P~~-f~~v~~~s~~~~~~ly~~~g~~  290 (347)
                      |+| .++....+..+++++|+++.++
T Consensus       309 P~r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       309 PQKAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            987 8999999999999999998764

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.38  E-value=4.5e-05  Score=76.91  Aligned_cols=227  Identities=12%  Similarity=0.090  Sum_probs=118.3

Q ss_pred             chHHHHHHHhhhhhhhhhchHH-HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           51 SAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP-~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      +.++.+.-.+.+++|+|++..| .+.+++|-..-++..++.+++....+    .++.|...+.|+.+-.       |.+-
T Consensus         5 ~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a----~~~aEl~s~~P~~gG~-------~~~~   73 (478)
T TIGR00913         5 KQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVM----QSLGEMATFYPVVSGS-------FATY   73 (478)
T ss_pred             cHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHH----HHHHHHHHhCCCCCCC-------HHHH
Confidence            4556667778899999998755 66667774322333444444433333    3456777766633222       3456


Q ss_pred             hHhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 019025          130 LDGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMT  208 (347)
Q Consensus       130 ~~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~  208 (347)
                      +++.+||+++.. .+....+ ...........++..+.+..+......|..++.++.. +.-.+..+..+....+....-
T Consensus        74 ~~~~~g~~~gf~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~in~~gv~~~~~~~~~~~~~k  151 (478)
T TIGR00913        74 ASRFVDPAFGFA-VGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVFIV-IINLFGVKGYGEAEFWFSSIK  151 (478)
T ss_pred             HHHHcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHH
Confidence            778899987754 2222211 1111111111222222232232333344332222111 222233444444433222111


Q ss_pred             HHHHHHHHHhh--hhcc-c--CC--C---CC-CC--Cch----hHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-ch
Q 019025          209 TYTAWYLTIAA--VVHG-Q--VE--G---AS-HT--APT----KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FK  270 (347)
Q Consensus       209 ~~~~~~i~v~~--~~~g-~--~~--~---v~-~~--~p~----~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~  270 (347)
                      +...+.+++.+  ...+ .  .+  .   .. .+  .|.    .+..+..++....|+|.|-.....+-+|+|||+| .+
T Consensus       152 i~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iP  231 (478)
T TIGR00913       152 ILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIP  231 (478)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHH
Confidence            11100111111  1111 1  11  0   00 00  111    2566778888999999999999999999999987 89


Q ss_pred             hHHHHHHHHHHHHHhhhhhh
Q 019025          271 YIYLFATLYVFTLTIPSATA  290 (347)
Q Consensus       271 ~v~~~s~~~~~~ly~~~g~~  290 (347)
                      |.+..+...+.++|+...+.
T Consensus       232 rai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       232 RAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887543

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.35  E-value=4e-05  Score=76.98  Aligned_cols=221  Identities=13%  Similarity=0.081  Sum_probs=108.2

Q ss_pred             hHHHHHHHhhhhhhhhhchHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025           52 AWDAWFSCASNQVAQVLLTLPYSFSQ-MGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL  130 (347)
Q Consensus        52 ~~~a~~nl~~~~iG~GiLsLP~af~~-~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~  130 (347)
                      .++..+-.+.++||+|++..|-...+ +|- ..++..++.+++    ..++..++.|...+.|..+-.|        +-+
T Consensus        16 ~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~----~~~v~~s~aEl~s~~P~aGg~y--------~~~   82 (456)
T PRK10238         16 NRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFI----AFLIMRQLGEMVVEEPVAGSFS--------HFA   82 (456)
T ss_pred             HHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCHH--------HHH
Confidence            33444677889999999888876655 452 222223333332    3334445567777766544322        335


Q ss_pred             HhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 019025          131 DGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTT  209 (347)
Q Consensus       131 ~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~  209 (347)
                      ++.+||.++.. .+....+ ...++.......++.+....++.....+..++..++.-+... ..+.+..+..+..+..+
T Consensus        83 ~~~~g~~~gf~-~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~~-gv~~~~~~~~~~~~iki  160 (456)
T PRK10238         83 YKYWGSFAGFA-SGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLT-NVKVFGEMEFWFAIIKV  160 (456)
T ss_pred             HHHcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            56789876654 2222111 111122222223333332222222222222222222222111 22333333322221111


Q ss_pred             HHHHHHHH---hhhhcc--cC-CCC----CCCC--chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHH
Q 019025          210 YTAWYLTI---AAVVHG--QV-EGA----SHTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFA  276 (347)
Q Consensus       210 ~~~~~i~v---~~~~~g--~~-~~v----~~~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s  276 (347)
                      ...+.+++   ..+..+  .+ ..+    ++++  |..+..+..+++...|+|.|-......-+|+|||+| .+|.+..+
T Consensus       161 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~  240 (456)
T PRK10238        161 IAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQV  240 (456)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHH
Confidence            11101111   111111  11 111    1111  334456667788899999999999999999999987 88988777


Q ss_pred             HHHHHHHHhhh
Q 019025          277 TLYVFTLTIPS  287 (347)
Q Consensus       277 ~~~~~~ly~~~  287 (347)
                      ...+.++|+..
T Consensus       241 ~~~i~~~y~~~  251 (456)
T PRK10238        241 IYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHH
Confidence            77677776554

>PRK10746 putative transport protein YifK; Provisional

Probab=98.32  E-value=0.00019  Score=72.17  Aligned_cols=227  Identities=11%  Similarity=0.068  Sum_probs=114.3

Q ss_pred             chHHHHHHHhhhhhhhhhchHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~-af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      +..+..+-.+.++||+|++..|. +.+.+|- ..++..++.+++....+    .++.|...+.|..+-        ..+-
T Consensus        13 ~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~----~~~aEl~~~~P~sGg--------~~~y   79 (461)
T PRK10746         13 EARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIM----RSMGEMLFLEPVTGS--------FAVY   79 (461)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHH----HHHHHHHHhcCCCCC--------HHHH
Confidence            44455577788999999998665 4556664 23333444444433333    344566666665432        2356


Q ss_pred             hHhhhcccchhhhhhhHHHHHHH-HHHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH-HHHH
Q 019025          130 LDGLLGPYWKAVGLAFNCTFLLF-GSVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL-GLGM  207 (347)
Q Consensus       130 ~~~~~G~~~~~~~~~~~i~~~~~-g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~-g~~~  207 (347)
                      +++.+||+++.. ......+... .....+...+..+.+..+......|..++.+++.-+. .+..+..+..... +.+.
T Consensus        80 ~~~~~g~~~Gf~-~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~lN-~~gv~~~~~~e~~~~~~k  157 (461)
T PRK10746         80 AHRYMSPFFGYL-TAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALAN-LAAVRLYGEIEFWFAMIK  157 (461)
T ss_pred             HHHHhCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH
Confidence            777889987754 3332211111 1122222233333333333332233322222222221 1222333322211 1111


Q ss_pred             HHHHHHHHH--H--hhhhcccC---CCCC----CCC--chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHH
Q 019025          208 TTYTAWYLT--I--AAVVHGQV---EGAS----HTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIY  273 (347)
Q Consensus       208 ~~~~~~~i~--v--~~~~~g~~---~~v~----~~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~  273 (347)
                      .+.+..+++  +  .....+..   .+.+    +.+  |..+.++..++....|+|.|-..+...-.|+|||+| .+|.+
T Consensus       158 i~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai  237 (461)
T PRK10746        158 VTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAV  237 (461)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence            111110110  0  00111111   1111    111  334667788999999999999999999999999987 78888


Q ss_pred             HHHHHHHHHHHhhhhhhhh
Q 019025          274 LFATLYVFTLTIPSATAVY  292 (347)
Q Consensus       274 ~~s~~~~~~ly~~~g~~gY  292 (347)
                      ..+...+.++|+......-
T Consensus       238 ~~~~~~i~~~yv~~~~~~~  256 (461)
T PRK10746        238 GKVLWRILIFYVGAIFVIV  256 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHe
Confidence            8777777777776544433

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.32  E-value=4.9e-05  Score=77.18  Aligned_cols=237  Identities=12%  Similarity=0.134  Sum_probs=120.0

Q ss_pred             cccCcchHHHHHHHhhhhhhhhhchHHHH-HHHhchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccch
Q 019025           46 LWHGGSAWDAWFSCASNQVAQVLLTLPYS-FSQMGMLSGI--LLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNH  122 (347)
Q Consensus        46 ~~~ggS~~~a~~nl~~~~iG~GiLsLP~a-f~~~G~v~Gi--illi~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~  122 (347)
                      +-+.=+.++...-.+.+++|+|++..|.. .+++|-. |.  +..++.+++....+    -++.|...+.|+.+-.|   
T Consensus        40 l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~a----l~~aELas~~P~sGG~y---  111 (501)
T TIGR00911        40 LKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGA----LVYAELGTTIPKSGGEY---  111 (501)
T ss_pred             cCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHH----HHHHHHHhhcCCCCchh---
Confidence            33444667777777788999999998875 4556743 43  22333333333332    34567777766654433   


Q ss_pred             hhcHHHHhHhhhcccchhhhhhhHHHHHH-HH-HHHHHHhhcccc-cccccccccchhh-HhHH-HHHHHhh--ccCCCC
Q 019025          123 VIQWFEVLDGLLGPYWKAVGLAFNCTFLL-FG-SVIQLIACASNI-YYINDRLDKRTWT-YIFG-ACCATTV--FIPSFH  195 (347)
Q Consensus       123 ~~~y~ev~~~~~G~~~~~~~~~~~i~~~~-~g-~v~~li~~~~~l-~~~~~~~~~~~~~-~i~~-~~~~pl~--~i~sl~  195 (347)
                           .-.++.+||.++.+. ........ .+ +.......++.+ ....+......|. .+.+ ++...+.  -.+..+
T Consensus       112 -----~~~~~~~g~~~gf~~-gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk  185 (501)
T TIGR00911       112 -----NYILEVFGPLLAFLR-LWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVK  185 (501)
T ss_pred             -----hhHHhHhCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhH
Confidence                 234567898876542 22111101 11 111111112111 1011111111221 1112 1111111  122333


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhh---cccCCCCC----CC-CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCc
Q 019025          196 NYRIWSFLGLGMTTYTAWYLTIAAVV---HGQVEGAS----HT-APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ  267 (347)
Q Consensus       196 ~l~~~S~~g~~~~~~~~~~i~v~~~~---~g~~~~v~----~~-~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~  267 (347)
                      ...++..+..+..+...+.+++.++.   .+...+.+    .+ .+.+...+..++....|+|.|-.....+-+|+|||+
T Consensus       186 ~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~  265 (501)
T TIGR00911       186 WATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY  265 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch
Confidence            33333332222111111112222222   12111111    11 112355677888999999999999999999999997


Q ss_pred             c-chhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 019025          268 K-FKYIYLFATLYVFTLTIPSATAVYWSFG  296 (347)
Q Consensus       268 ~-f~~v~~~s~~~~~~ly~~~g~~gY~afG  296 (347)
                      | .+|.+..+...+.++|++..+......+
T Consensus       266 r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~  295 (501)
T TIGR00911       266 RTLPIAIIISMPIVTFIYVLTNIAYFTVLS  295 (501)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6 8999999999999999998665544443

>PRK10836 lysine transporter; Provisional

Probab=98.25  E-value=0.00016  Score=73.22  Aligned_cols=231  Identities=11%  Similarity=0.057  Sum_probs=114.7

Q ss_pred             chHHHHHHHhhhhhhhhhchHHH-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPY-SFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~-af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      +.++...-.+.++||+|++.+|- +.+++|-...++..++.+++..    +...+|.|...+.|+.+-.|        .-
T Consensus        18 ~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~----~~al~~aEL~s~~P~sGg~y--------~y   85 (489)
T PRK10836         18 KARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVY----FLMTSLGELAAYMPVSGSFA--------TY   85 (489)
T ss_pred             cHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCCHH--------HH
Confidence            45666688889999999999996 6667775333444444444443    33345677788777655433        33


Q ss_pred             hHhhhcccchhhhhhhHHHHHHHHH-HHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH-HHH-
Q 019025          130 LDGLLGPYWKAVGLAFNCTFLLFGS-VIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL-GLG-  206 (347)
Q Consensus       130 ~~~~~G~~~~~~~~~~~i~~~~~g~-v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~-g~~-  206 (347)
                      +++.+|+.++.. .+....+....+ ..........+.+..+......|..++.+++.-+ -....+..+....+ ... 
T Consensus        86 ~~~~~g~~~gf~-~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-N~~gv~~~~~~~~~~~~~k  163 (489)
T PRK10836         86 GQNYVEEGFGFA-LGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLL-NYISVRGFGEAEYWFSLIK  163 (489)
T ss_pred             HHHHcChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-HHHcchhhhhhHHHHHHHH
Confidence            445667765543 222221111111 1111111111112111111111222211111111 12223333222211 111 


Q ss_pred             -HHH--HHHH-HHHHhhhhcccC----CCCCC-CC--chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHH
Q 019025          207 -MTT--YTAW-YLTIAAVVHGQV----EGASH-TA--PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYL  274 (347)
Q Consensus       207 -~~~--~~~~-~i~v~~~~~g~~----~~v~~-~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~  274 (347)
                       ..+  ++.. .+.+.+..++.+    .+++. ..  +..+..++.++....|+|.|-..+...-+|+|||+| .+|.+.
T Consensus       164 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~  243 (489)
T PRK10836        164 VTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVR  243 (489)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHH
Confidence             111  1110 011111111111    01111 11  123445555566678999999999999999999987 799999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhc
Q 019025          275 FATLYVFTLTIPSATAVYWSF  295 (347)
Q Consensus       275 ~s~~~~~~ly~~~g~~gY~af  295 (347)
                      .++..+.++|+..........
T Consensus       244 ~~~~~v~~~Yvl~~~~~~~~v  264 (489)
T PRK10836        244 QVFWRILLFYVFAILIISLII  264 (489)
T ss_pred             HHHHHHHHHHHHHHHHHheec
Confidence            999999999988765544333

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=98.17  E-value=3e-05  Score=77.16  Aligned_cols=226  Identities=12%  Similarity=0.126  Sum_probs=131.3

Q ss_pred             HHHhhhhhhhhhchHHHHHHHhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhh
Q 019025           57 FSCASNQVAQVLLTLPYSFSQMG--MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL  134 (347)
Q Consensus        57 ~nl~~~~iG~GiLsLP~af~~~G--~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~  134 (347)
                      ..++.+++|+|+..-|-+..+.+  ....+++-++.|+++.-.+.    ||.|+-..-++.+-+|-     |   ..++|
T Consensus        21 ~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~gal----cyaELGT~ipksGgd~a-----y---i~~af   88 (479)
T KOG1287|consen   21 SLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGAL----CYAELGTSIPKSGGDYA-----Y---ISEAF   88 (479)
T ss_pred             eEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHH----HHHHHhccccCCCcchh-----h---HHHHh
Confidence            55677899999999998876655  23333334444444443333    67787766666655442     2   24578


Q ss_pred             cccchhhhhhhHHHHHHHHH--HHHHHhhccc-cccccc-ccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHHHHH-
Q 019025          135 GPYWKAVGLAFNCTFLLFGS--VIQLIACASN-IYYIND-RLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTT-  209 (347)
Q Consensus       135 G~~~~~~~~~~~i~~~~~g~--v~~li~~~~~-l~~~~~-~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~~~~-  209 (347)
                      |+.+.-...-+... ....+  .++-+.+++- +....+ ....+.+.-.++.+++.+....|..+.|+.+.+-.+.+. 
T Consensus        89 g~~~aF~~~wvs~l-~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft~~  167 (479)
T KOG1287|consen   89 GPFPAFLFLWVSLL-IIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVFTIA  167 (479)
T ss_pred             ccchhHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            88765431211111 11121  2333333432 222111 122333444445555555555677778877766555442 


Q ss_pred             -HHH-HHHHHhhhh---cccCCCCCC---CC-chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHH
Q 019025          210 -YTA-WYLTIAAVV---HGQVEGASH---TA-PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLY  279 (347)
Q Consensus       210 -~~~-~~i~v~~~~---~g~~~~v~~---~~-p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~  279 (347)
                       ..+ ..+.+.++.   .|..++.++   ++ ..+..++-.++=.-.|+|.|=...--+-+|+|||+| +|+.+..++.+
T Consensus       168 Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~l  247 (479)
T KOG1287|consen  168 KLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPL  247 (479)
T ss_pred             HHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHH
Confidence             222 223333333   232222221   11 123455666777889999999999999999999988 89999999999


Q ss_pred             HHHHHhhhhhhhhhhc
Q 019025          280 VFTLTIPSATAVYWSF  295 (347)
Q Consensus       280 ~~~ly~~~g~~gY~af  295 (347)
                      ++++|+++=++.+-+-
T Consensus       248 vt~iYil~NvAy~~vl  263 (479)
T KOG1287|consen  248 VTVIYVLVNVAYFTVL  263 (479)
T ss_pred             HHHHHHHhHhheeEec
Confidence            9999999877665433

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.07  E-value=0.00077  Score=67.14  Aligned_cols=63  Identities=13%  Similarity=0.186  Sum_probs=55.6

Q ss_pred             HHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCcc
Q 019025          236 LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGDQ  298 (347)
Q Consensus       236 ~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG~~  298 (347)
                      ...+..++....++|.|-......-+|+|||+| .+|.+..++..+.++|+..........+++
T Consensus       200 ~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~  263 (466)
T COG0531         200 FGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAG  263 (466)
T ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            346778889999999999999999999999965 799999999999999999999888887763

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=97.98  E-value=5.4e-05  Score=66.85  Aligned_cols=47  Identities=26%  Similarity=0.311  Sum_probs=41.1

Q ss_pred             HHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 019025           57 FSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISV  103 (347)
Q Consensus        57 ~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~  103 (347)
                      .-++|-++|+|-|+||.||+.+||+.++.++.+.+.++.-+...+..
T Consensus        19 lymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfvie   65 (319)
T KOG3832|consen   19 LYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIE   65 (319)
T ss_pred             hhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667899999999999999999999999999999999887765544

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.93  E-value=0.00014  Score=73.45  Aligned_cols=225  Identities=13%  Similarity=0.126  Sum_probs=121.3

Q ss_pred             hhhhhhhhhc-hHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhcccc
Q 019025           60 ASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYW  138 (347)
Q Consensus        60 ~~~~iG~GiL-sLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~~  138 (347)
                      +.+++|+|++ +.+.+..+.|.....+..++.+++...++.-+    .|..++.++.+-.        .+.+++.+||+.
T Consensus         7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~----~ems~~~p~~Gg~--------y~y~~~~lg~~~   74 (478)
T PF00324_consen    7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSL----AEMSRRFPSAGGF--------YAYASRGLGPAL   74 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhh----hhhhhhhccccch--------hhhhhhccCCcC
Confidence            4567888865 47889999998766666666666665555544    3555555544322        356677889887


Q ss_pred             hhhhhhhHHHH-HHHHHHHHHHhhccccccc--ccccc-cchh----hHhHHHHHHHhhccCCCCchhHHHHH-HHHHHH
Q 019025          139 KAVGLAFNCTF-LLFGSVIQLIACASNIYYI--NDRLD-KRTW----TYIFGACCATTVFIPSFHNYRIWSFL-GLGMTT  209 (347)
Q Consensus       139 ~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~--~~~~~-~~~~----~~i~~~~~~pl~~i~sl~~l~~~S~~-g~~~~~  209 (347)
                      +.. .+....+ ............+..+++.  ..... ...|    ..++.+++..+.+. ..+..+..... ..+..+
T Consensus        75 Gf~-~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~  152 (478)
T PF00324_consen   75 GFA-AGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLI  152 (478)
T ss_pred             Cce-eeHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhh
Confidence            653 2222111 1111112222222222222  11112 2223    33333333333332 23333332221 111111


Q ss_pred             HHHHHHHHhh-h--hcc-cCCCC-------C--CCCc--------hhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc
Q 019025          210 YTAWYLTIAA-V--VHG-QVEGA-------S--HTAP--------TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK  268 (347)
Q Consensus       210 ~~~~~i~v~~-~--~~g-~~~~v-------~--~~~p--------~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~  268 (347)
                      ..+ .+.+.. +  ..+ .+.+.       .  ..-|        .++.+++.++....++|.|-......-+|.|||+|
T Consensus       153 ~li-~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k  231 (478)
T PF00324_consen  153 ALI-AFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK  231 (478)
T ss_pred             Hhh-hhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchh
Confidence            111 111222 1  111 11111       0  0011        13677899999999999999999999999999997


Q ss_pred             -chhHHHHHHHHHHHHHhhhhhhhhhhcCccc
Q 019025          269 -FKYIYLFATLYVFTLTIPSATAVYWSFGDQL  299 (347)
Q Consensus       269 -f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~  299 (347)
                       .+|....+...+.++|+......=...|.+.
T Consensus       232 ~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~  263 (478)
T PF00324_consen  232 TIPRATLLSVLRIGVFYVLTSYALTLAVPYDN  263 (478)
T ss_pred             hhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence             7899888888888888887776655665544

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=97.85  E-value=0.0048  Score=62.26  Aligned_cols=61  Identities=10%  Similarity=-0.042  Sum_probs=46.7

Q ss_pred             HHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCc
Q 019025          237 VLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGD  297 (347)
Q Consensus       237 ~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG~  297 (347)
                      ..++.+.....|+|.|-.....+-+|+|||+| .+|.+..+..++.++|.+.-+......++
T Consensus       213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~  274 (475)
T TIGR03428       213 GAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPS  274 (475)
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            34555667788999999999999999999987 79999888887776665555544444454

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.68  E-value=0.0054  Score=62.28  Aligned_cols=54  Identities=11%  Similarity=0.106  Sum_probs=46.1

Q ss_pred             HHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhh
Q 019025          238 LYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAV  291 (347)
Q Consensus       238 ~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~g  291 (347)
                      .++.++....|+|.|-......-+|+|||+| .+|.+..+...+..+|++...+.
T Consensus       212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~  266 (496)
T PRK15238        212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLW  266 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778889999999999999999999986 89999999998889988764433

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=97.61  E-value=0.0055  Score=60.61  Aligned_cols=226  Identities=13%  Similarity=0.243  Sum_probs=123.9

Q ss_pred             HHHhhhhhhhhh-chHHHHHHHhchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhh
Q 019025           57 FSCASNQVAQVL-LTLPYSFSQMGMLSGILLQ-IFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL  134 (347)
Q Consensus        57 ~nl~~~~iG~Gi-LsLP~af~~~G~v~Giill-i~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~  134 (347)
                      +-.+.+.||+|+ |+--.+.+.+|  +++++- ++.|++...-+..|.    |....++.+ .       |+.+.+++.+
T Consensus        22 lIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLG----Em~~~~p~~-g-------SF~~~a~~~l   87 (462)
T COG1113          22 LIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALG----EMLVANPVS-G-------SFSDYARKYL   87 (462)
T ss_pred             HHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHH----HHHHhCCCC-C-------cHHHHHHHHh
Confidence            455678899995 56777888888  444432 333344444444444    333333322 1       4568899999


Q ss_pred             cccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHH----HHhhccCCCCchhHH-HHHHHHHH
Q 019025          135 GPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACC----ATTVFIPSFHNYRIW-SFLGLGMT  208 (347)
Q Consensus       135 G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~----~pl~~i~sl~~l~~~-S~~g~~~~  208 (347)
                      |++++.. .+-.--+ ...-+...+.+.+.-+++..++.  ..|+.....+.    .=+.-.|.+.++-+| +++=++.+
T Consensus        88 G~~Agf~-tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aI  164 (462)
T COG1113          88 GPWAGFL-TGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--PQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAI  164 (462)
T ss_pred             cchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987754 2222111 11123445555554444433333  56754333222    223335555555554 22222221


Q ss_pred             H-HHHHHH-HHhhhhccc--CCC----CCCCC--chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHH----
Q 019025          209 T-YTAWYL-TIAAVVHGQ--VEG----ASHTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIY----  273 (347)
Q Consensus       209 ~-~~~~~i-~v~~~~~g~--~~~----v~~~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~----  273 (347)
                      + ++++.+ .+.....+.  +.+    ++|.+  |+.+.+++.++-+.+|||+|.-.+=---.|-|||+| .+|..    
T Consensus       165 i~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~  244 (462)
T COG1113         165 IAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVI  244 (462)
T ss_pred             HHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhh
Confidence            1 111111 111111111  112    23443  788899999999999999999988888899999998 44543    


Q ss_pred             -HHHHHHHHHHHhhhhhhhhhhcCccc
Q 019025          274 -LFATLYVFTLTIPSATAVYWSFGDQL  299 (347)
Q Consensus       274 -~~s~~~~~~ly~~~g~~gY~afG~~~  299 (347)
                       .+...++..+.+++.+.-+=.++++.
T Consensus       245 ~RI~iFYvgsl~vi~~l~PW~~~~~~~  271 (462)
T COG1113         245 WRILIFYVGSLFVILSLYPWNQIGEDG  271 (462)
T ss_pred             HHHHHHHHHHHHHHheeccccccCCCC
Confidence             34555667777777887776666644

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.59  E-value=0.0057  Score=62.38  Aligned_cols=49  Identities=6%  Similarity=0.136  Sum_probs=40.6

Q ss_pred             hhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhh
Q 019025          241 TGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSAT  289 (347)
Q Consensus       241 ~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~  289 (347)
                      ..+..++|+|.|-......-+|||||+| ++|.+..+...+.++|.+..+
T Consensus       198 ~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~  247 (507)
T TIGR00910       198 VVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGF  247 (507)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            3444568999999999999999999986 999999998888888876443

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.42  E-value=0.00055  Score=70.19  Aligned_cols=218  Identities=15%  Similarity=0.154  Sum_probs=121.5

Q ss_pred             hhhhhhhhhch-HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cccccchhhcHHHHhHhhhccc
Q 019025           60 ASNQVAQVLLT-LPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKE-NVSFKNHVIQWFEVLDGLLGPY  137 (347)
Q Consensus        60 ~~~~iG~GiLs-LP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~-~~~~~~~~~~y~ev~~~~~G~~  137 (347)
                      +.+.+|+|+.- ...+.++.|=..=++..++.+    ...++...||.|+..+.|+. +.-|        .-+....|+-
T Consensus        42 iGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g----~~~~~~~~~~~E~~~~~P~~aGs~~--------~ya~~~i~e~  109 (554)
T KOG1286|consen   42 IGGTIGTGLFVGTGSALRNGGPPSLLISFIIAG----IAALLSALCLGEFAVRFPVSAGSFY--------TYAYRFVGES  109 (554)
T ss_pred             ecceeccceEEeccHHHhccCChhHHHHHHHHH----HHHHHHHHHHHHHheecccccccce--------eeeeeeeCcH
Confidence            45789999875 666777777443333333333    34444555677888887763 2212        1233445665


Q ss_pred             chhhhhhhHHHH-HHHHHHHHHHhhcccccccc---------cccccchhhHhHHH--HHHHhhccCCCCchhHHHHHHH
Q 019025          138 WKAVGLAFNCTF-LLFGSVIQLIACASNIYYIN---------DRLDKRTWTYIFGA--CCATTVFIPSFHNYRIWSFLGL  205 (347)
Q Consensus       138 ~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~---------~~~~~~~~~~i~~~--~~~pl~~i~sl~~l~~~S~~g~  205 (347)
                      |+-. ++.+..+ .+.++-..+..++..+++++         +......|..++.+  +++.+.-.+-+-..++++.+.-
T Consensus       110 ~aF~-~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~k  188 (554)
T KOG1286|consen  110 LAFA-IGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNK  188 (554)
T ss_pred             HHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHHH
Confidence            5533 3333322 11222233334444445543         45555677655543  3334444555455555544333


Q ss_pred             HHHH--HHHH-HHHHhhhhcccCCCC------CCC---CchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhH
Q 019025          206 GMTT--YTAW-YLTIAAVVHGQVEGA------SHT---APTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYI  272 (347)
Q Consensus       206 ~~~~--~~~~-~i~v~~~~~g~~~~v------~~~---~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v  272 (347)
                      +.+.  +..+ ++++.+...+++.++      .++   .|..+.+++.++.+..|+|.|--.+-..-+|-|||+| .++.
T Consensus       189 vl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~a  268 (554)
T KOG1286|consen  189 ILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKA  268 (554)
T ss_pred             HHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHH
Confidence            3221  1111 111222222221122      111   1334677788999999999999999999999999987 7888


Q ss_pred             HHHHHHHHHHHHhhhhhh
Q 019025          273 YLFATLYVFTLTIPSATA  290 (347)
Q Consensus       273 ~~~s~~~~~~ly~~~g~~  290 (347)
                      ...++..++++|+.+.+.
T Consensus       269 i~~s~~ri~~~Yi~~~~~  286 (554)
T KOG1286|consen  269 IKQSLLRILLFYILSSIV  286 (554)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888888877654

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.14  E-value=0.04  Score=55.57  Aligned_cols=54  Identities=15%  Similarity=0.252  Sum_probs=44.7

Q ss_pred             hHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCcc
Q 019025          245 NILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGDQ  298 (347)
Q Consensus       245 ~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG~~  298 (347)
                      .+.|+|.|-......-+|+|||+| .+|.+..+...+.++|++..+......+++
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~  256 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPRE  256 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHh
Confidence            467899999999999999999987 899999999999999988766554444443

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=96.97  E-value=0.031  Score=56.56  Aligned_cols=214  Identities=13%  Similarity=0.118  Sum_probs=123.9

Q ss_pred             HHHhhhhhhhhhc-hHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhc
Q 019025           57 FSCASNQVAQVLL-TLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLG  135 (347)
Q Consensus        57 ~nl~~~~iG~GiL-sLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G  135 (347)
                      +..+.+.||+|++ +.-.+.+++|=..-++.-++.+.+.+.++.-|.+    +....|.. -+|.       .-+.+..+
T Consensus        53 MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGE----ma~~~P~s-GsF~-------~ya~rfvd  120 (541)
T COG0833          53 MIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGE----LAVFYPVS-GSFS-------TYATRFVD  120 (541)
T ss_pred             HHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCC-Cchh-------hhhhhhcC
Confidence            5566789999964 6999999999887777788888887777777764    34434422 2243       33444445


Q ss_pred             ccchhhhhhhHHHHHHHH--HHHHHHhhcccccccc-cccccchhhHhHHHHHHHhhc--cCCCCchhHH-HHHHHHHHH
Q 019025          136 PYWKAVGLAFNCTFLLFG--SVIQLIACASNIYYIN-DRLDKRTWTYIFGACCATTVF--IPSFHNYRIW-SFLGLGMTT  209 (347)
Q Consensus       136 ~~~~~~~~~~~i~~~~~g--~v~~li~~~~~l~~~~-~~~~~~~~~~i~~~~~~pl~~--i~sl~~l~~~-S~~g~~~~~  209 (347)
                      +-++.. ++.+-.+ ..-  .-..++.++..+++.+ +..+...|..+|.++++.+-.  .|.+.+.-+| |.+=+++.+
T Consensus       121 pa~GFa-~gWnYw~-~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii  198 (541)
T COG0833         121 PAFGFA-LGWNYWL-NWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTII  198 (541)
T ss_pred             chHHHH-HHHHHHH-HHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHH
Confidence            543322 2222211 111  1235666666677765 345778898888876665544  4555555544 333333322


Q ss_pred             -HHHH-HHHHhhhhcccCC-C---CCCCC--chhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHH
Q 019025          210 -YTAW-YLTIAAVVHGQVE-G---ASHTA--PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYV  280 (347)
Q Consensus       210 -~~~~-~i~v~~~~~g~~~-~---v~~~~--p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~  280 (347)
                       ++.+ ++++.+...++.+ +   +.+++  +..+.++...+-+..|||.|.-++----.|-+||+| .+|.+...+-=+
T Consensus       199 ~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRI  278 (541)
T COG0833         199 GFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRI  278 (541)
T ss_pred             HHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHH
Confidence             2111 1112222222111 1   11222  345777788888999999999888888889999988 555554443333


Q ss_pred             HHHH
Q 019025          281 FTLT  284 (347)
Q Consensus       281 ~~ly  284 (347)
                      +++|
T Consensus       279 l~FY  282 (541)
T COG0833         279 LLFY  282 (541)
T ss_pred             HHHH
Confidence            4444

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=96.84  E-value=0.14  Score=51.73  Aligned_cols=59  Identities=14%  Similarity=0.154  Sum_probs=43.2

Q ss_pred             HHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 019025          238 LYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFG  296 (347)
Q Consensus       238 ~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG  296 (347)
                      .++.++....|+|.|-......-+|+|||+| .+|.+..+..+..+++++..+.-+...+
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3455666678999999999999999999987 7899888877665544443333343444

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=96.68  E-value=0.22  Score=49.68  Aligned_cols=191  Identities=12%  Similarity=0.091  Sum_probs=97.3

Q ss_pred             HHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccC--CCCchhHHHHHH
Q 019025          128 EVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIP--SFHNYRIWSFLG  204 (347)
Q Consensus       128 ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~--sl~~l~~~S~~g  204 (347)
                      .+.|..||+++.++ ..+...+.+.| ..+..+.+++... .++..+...|+++.++++..+++.-  -++.+..++..-
T Consensus        85 i~sR~~fG~~Gs~l-~sll~~~~~iGW~~v~~~l~~~a~~-~~~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~  162 (442)
T COG1457          85 ILSRYPFGVKGSIL-PSLLNGITLIGWFGVNVILSGIAIG-SGTGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPL  162 (442)
T ss_pred             eeecccccchhHHH-HHHHHHHHHhhHHHHHHHHhccccc-cCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            67888999998876 55555566667 5667776665421 1245566677788887777776643  344444333322


Q ss_pred             HHHHHHHHHHHHHhhhhc--ccCCCCCCCCchhHHHHHhhhhhHH-HhcccccchHhHHHhcCCCc--cchhHHHHHHHH
Q 019025          205 LGMTTYTAWYLTIAAVVH--GQVEGASHTAPTKLVLYFTGATNIL-YTFGGHAVTVEIMHAMWKPQ--KFKYIYLFATLY  279 (347)
Q Consensus       205 ~~~~~~~~~~i~v~~~~~--g~~~~v~~~~p~~~~~~f~a~g~i~-faF~gh~~~~~I~~~M~~P~--~f~~v~~~s~~~  279 (347)
                      .+. ++.  +. +..+.+  +......-..|.+...+..++...+ +.-..-....+..+-+|+|+  |.-.....+...
T Consensus       163 ~~~-lf~--~l-~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l  238 (442)
T COG1457         163 LLL-LFL--YL-LALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFL  238 (442)
T ss_pred             HHH-HHH--HH-HHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHH
Confidence            221 111  11 122222  1111111122444444444443322 22234456778888888877  322223334444


Q ss_pred             HHHHHhhhhhhhhhhcCccccccccccccCCCchHHHHHHHHHHHHhh
Q 019025          280 VFTLTIPSATAVYWSFGDQLLNHSNAFSLLPKNRWRDAAVILMLIHQV  327 (347)
Q Consensus       280 ~~~ly~~~g~~gY~afG~~~~~~~nil~~lp~~~~~~~a~il~~i~~~  327 (347)
                      ...+-..+|.+.-.+=|+.... .+....+.+  +...+.+..++...
T Consensus       239 ~~~~~~ilGa~~a~a~g~~~~~-~~~~~~~G~--~g~~~~lil~l~~~  283 (442)
T COG1457         239 GTSFMMILGAALAAAAGNADSI-ADVMLGLGG--FGLPAILILVLGTV  283 (442)
T ss_pred             HHHHHHHHHHHHHHhcCCCchH-HHHHHhccc--HHHHHHHHHHHHHH
Confidence            5555666777777777765521 233333332  44444444444443

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=96.46  E-value=0.36  Score=48.32  Aligned_cols=181  Identities=12%  Similarity=0.028  Sum_probs=85.5

Q ss_pred             HHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccc----ccccc---cc------cchhhHhHHHHHHHhhccC
Q 019025          127 FEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIY----YINDR---LD------KRTWTYIFGACCATTVFIP  192 (347)
Q Consensus       127 ~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~----~~~~~---~~------~~~~~~i~~~~~~pl~~i~  192 (347)
                      ..+.|..||+++.++ ..+.-.+...| ..++....++.+.    .+.+.   ..      ...+.+++.++.+++....
T Consensus        79 ~v~sR~~FG~~Gs~~-~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~  157 (442)
T TIGR00800        79 PVLSRASFGIYGSLL-PSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFF  157 (442)
T ss_pred             chhhhhhhhhhHhHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcC
Confidence            478899999998875 33333333333 3334333332221    11111   11      1122345555666655554


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHhhhh--cccCC--CCC--CCCchhHHHHHhhhhhHHHh-cccccchHhHHHhcCC
Q 019025          193 SFHNYRIWSFLGLGMTTYTAWYLTIAAVV--HGQVE--GAS--HTAPTKLVLYFTGATNILYT-FGGHAVTVEIMHAMWK  265 (347)
Q Consensus       193 sl~~l~~~S~~g~~~~~~~~~~i~v~~~~--~g~~~--~v~--~~~p~~~~~~f~a~g~i~fa-F~gh~~~~~I~~~M~~  265 (347)
                      -.+-.+.....+......+. .+.+....  ++..+  ...  .+++.....++.++...+-. -..-.+.++.-+.+|+
T Consensus       158 g~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~  236 (442)
T TIGR00800       158 GYKIRHLFEWLAVVPPFAAF-GMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKS  236 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCC
Confidence            44444334444433211111 11111121  22211  111  12233344555555443322 2444578999999999


Q ss_pred             CccchhHHHHHHHHHHHHHhhhhhhhhhh----cCccccccccccccC
Q 019025          266 PQKFKYIYLFATLYVFTLTIPSATAVYWS----FGDQLLNHSNAFSLL  309 (347)
Q Consensus       266 P~~f~~v~~~s~~~~~~ly~~~g~~gY~a----fG~~~~~~~nil~~l  309 (347)
                      |++-.+....+.....+....+|+.+-.+    +|+..-+..+++..+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~  284 (442)
T TIGR00800       237 KKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARF  284 (442)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHh
Confidence            88755555556665666666666666655    887654322333433

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=96.17  E-value=0.17  Score=48.18  Aligned_cols=123  Identities=18%  Similarity=0.294  Sum_probs=71.8

Q ss_pred             HHHhhhhhhhhhch---HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhh
Q 019025           57 FSCASNQVAQVLLT---LPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGL  133 (347)
Q Consensus        57 ~nl~~~~iG~GiLs---LP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~  133 (347)
                      |-.+.+.+|+|.-+   .=.=|..-|+. |..-.++.+.+-..++.++.+.    ..+-+  .       .+|.|+-+..
T Consensus        10 f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~i----g~~f~--a-------~~y~~~~~~v   75 (349)
T COG3949          10 FAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTI----GKKFN--A-------TSYREILKYV   75 (349)
T ss_pred             HHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHH----HHHhc--c-------cchHHHHHHH
Confidence            34455778888665   33334555665 6666666677766677666432    11111  0       1478999999


Q ss_pred             hcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhh--HhHHHHHHHhhccCCCCch
Q 019025          134 LGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWT--YIFGACCATTVFIPSFHNY  197 (347)
Q Consensus       134 ~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~--~i~~~~~~pl~~i~sl~~l  197 (347)
                      +||++.++ .+..+.+.+++ |++-+-..++++   ++.++-..|.  ++....+..+.++++.+.+
T Consensus        76 ~~~~~~ki-~d~~iif~lf~~~vVM~AGags~~---~e~~~lP~wiGali~i~~v~i~lfl~~vegi  138 (349)
T COG3949          76 SGPKFAKI-IDIIIIFFLFSTAVVMLAGAGSLL---EEMFGLPYWIGALIIILLVLILLFLGRVEGI  138 (349)
T ss_pred             hhHHHHHH-HHHHHHHHHHHHHHHHhccchhHH---HHHhCccHHHHHHHHHHHHHHHHHHhcccce
Confidence            99999987 55555666666 444443223233   4455666775  3444445556667766665

>PRK11375 allantoin permease; Provisional

Probab=95.66  E-value=1.2  Score=45.28  Aligned_cols=64  Identities=5%  Similarity=0.094  Sum_probs=32.8

Q ss_pred             HHHHhhhhhHHHhcc-cccchHhHHHhcCCCccchhHHHHHHHHHHHHHhhhhhhh----hhhcCcccc
Q 019025          237 VLYFTGATNILYTFG-GHAVTVEIMHAMWKPQKFKYIYLFATLYVFTLTIPSATAV----YWSFGDQLL  300 (347)
Q Consensus       237 ~~~f~a~g~i~faF~-gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~~ly~~~g~~g----Y~afG~~~~  300 (347)
                      ..+..++...+-+|. +-.+.|+.-+..|+|++-.+.-..+......+...+|+..    ...||+...
T Consensus       227 ~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~  295 (484)
T PRK11375        227 FLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTW  295 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            334444433333444 4447889999988887644433334443333332233222    446676554

>TIGR00835 agcS amino acid carrier protein

Probab=95.65  E-value=0.19  Score=50.03  Aligned_cols=60  Identities=20%  Similarity=0.311  Sum_probs=44.0

Q ss_pred             cchHHHHHHHhhhhhhhh-hchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019025           50 GSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRS  110 (347)
Q Consensus        50 gS~~~a~~nl~~~~iG~G-iLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~  110 (347)
                      -|.+|+.+....+++|+| +++.|.|.+..| -.+++.+-+.++++.-+.+.-+.+-.+||+
T Consensus        47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~  107 (425)
T TIGR00835        47 VSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRE  107 (425)
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence            588999999999999998 999999988888 235555656666665555554444345554

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=95.60  E-value=2.1  Score=43.69  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=45.4

Q ss_pred             hHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCccc
Q 019025          235 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGDQL  299 (347)
Q Consensus       235 ~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~  299 (347)
                      +-..+..++-+-..++.|-.....+-+|-||+++ -++.+..+..+..++=..+-+.-..+-+|+.
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~  315 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL  315 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            3455666788888899999999999999999987 5777766666555554444444445556433

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=94.86  E-value=0.61  Score=45.33  Aligned_cols=81  Identities=17%  Similarity=0.192  Sum_probs=56.9

Q ss_pred             HHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccccccccchhhcHHH
Q 019025           53 WDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGF----LGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE  128 (347)
Q Consensus        53 ~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~----l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~e  128 (347)
                      +--+-|=..++-|+|-+-=|..-++-||+++.+.+++-+.    +-.|...++       +.|++.+         |..|
T Consensus        55 ~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~-------SvR~~G~---------Si~~  118 (376)
T PF02554_consen   55 WVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMA-------SVRHKGK---------SIGE  118 (376)
T ss_pred             HHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhh-------hhcCCCc---------cHHH
Confidence            3444667789999999999999999999999988765433    334444333       2333322         4689


Q ss_pred             HhHhhhcccchhhhhhhHHHH
Q 019025          129 VLDGLLGPYWKAVGLAFNCTF  149 (347)
Q Consensus       129 v~~~~~G~~~~~~~~~~~i~~  149 (347)
                      ++++.+||+.|++...++...
T Consensus       119 i~~~~lG~~~~~lf~~f~~~~  139 (376)
T PF02554_consen  119 IAGKYLGKRAKKLFLIFIFFL  139 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998755444433

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=94.27  E-value=7.1  Score=39.76  Aligned_cols=136  Identities=14%  Similarity=0.061  Sum_probs=69.5

Q ss_pred             Hhhhhhh-hhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhccc
Q 019025           59 CASNQVA-QVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPY  137 (347)
Q Consensus        59 l~~~~iG-~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G~~  137 (347)
                      ...+..+ .-++++|-...+.|+. +....+............+.+-..++. +        ++...|..|..+.-||++
T Consensus        49 ~~as~~s~~t~lG~~g~ay~~G~~-~~~~~~~~~~~~~~~~~~~~~rl~~~~-~--------~~~~~T~~d~l~~Rf~s~  118 (493)
T COG0591          49 AAASDTSGWTFLGLPGLAYASGLS-GLWIAIGLLIGAFLLWLLFAPRLRRLA-K--------ARGATTIPDFLEARFGSK  118 (493)
T ss_pred             HHHHHHHHHHHhcchHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-c--------ccCCccHHHHHHHHcCCh
Confidence            3344444 7789999999999976 333332221222222222222111221 1        112336789999999954


Q ss_pred             chhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHH
Q 019025          138 WKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL  205 (347)
Q Consensus       138 ~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~  205 (347)
                      +-+....+.......+ +..|+...+..++...+ .+...-.++.+.++..-..+--+++..++..+=-
T Consensus       119 ~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg  186 (493)
T COG0591         119 ILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQG  186 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            4443243333333333 55677665544432222 3333323344555666666777777777766543

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=94.06  E-value=7.6  Score=39.29  Aligned_cols=80  Identities=15%  Similarity=0.066  Sum_probs=42.3

Q ss_pred             cHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025          125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL  203 (347)
Q Consensus       125 ~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~  203 (347)
                      +..|..+.-||++..+....+.....+.+ ...|+...+..+..+- ..+....+++.++++...+.+.-++...+...+
T Consensus       109 T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~-gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~i  187 (483)
T PRK09442        109 TLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT-GISYETGLLIFGITVALYTAFGGFRAVVLTDAL  187 (483)
T ss_pred             cHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            57899999999775543222222222222 2445554443333221 234444445555566666667777776666554


Q ss_pred             HH
Q 019025          204 GL  205 (347)
Q Consensus       204 g~  205 (347)
                      -.
T Consensus       188 Q~  189 (483)
T PRK09442        188 QG  189 (483)
T ss_pred             HH
Confidence            43

>TIGR02119 panF sodium/pantothenate symporter

Probab=93.84  E-value=8.1  Score=38.87  Aligned_cols=80  Identities=16%  Similarity=0.105  Sum_probs=43.2

Q ss_pred             cHHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHH
Q 019025          125 QWFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL  203 (347)
Q Consensus       125 ~y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~  203 (347)
                      |..|..+.-||++..+....+.....+++ .+.|+...+..++..- .++....+++.++++.-.....-++...++..+
T Consensus       108 T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~-gi~~~~~iii~~~iv~iYt~~GG~~av~~td~i  186 (471)
T TIGR02119       108 TINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLT-GLSYLTALFIFSSSVLIYTTFGGFRAVALTDAI  186 (471)
T ss_pred             cHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            57899999999776554333333333333 2345544443332221 234334445555556666666667776666555


Q ss_pred             HH
Q 019025          204 GL  205 (347)
Q Consensus       204 g~  205 (347)
                      -.
T Consensus       187 Q~  188 (471)
T TIGR02119       187 QG  188 (471)
T ss_pred             HH
Confidence            43

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=92.95  E-value=8.6  Score=37.81  Aligned_cols=168  Identities=9%  Similarity=0.058  Sum_probs=80.4

Q ss_pred             HHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccc----cccccchhhHhHHHHHHHhhccCCCCchhHH
Q 019025          126 WFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYIN----DRLDKRTWTYIFGACCATTVFIPSFHNYRIW  200 (347)
Q Consensus       126 y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~----~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~  200 (347)
                      +.-+.|..||+++.++.. +.......| -.+|....++.++.+.    +......|..+++++..+.++. -+|.++++
T Consensus        60 ~~v~sR~~FG~~Gs~~~~-~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-G~~~i~~~  137 (386)
T TIGR02358        60 AMGSLKLSLGSKGSVLPS-LLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLLS-GPLAFVWL  137 (386)
T ss_pred             HHHHHHHHHccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            467899999999887632 222233333 2334333333332221    1112234555666656666653 35666666


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCchhHHHHHhhhhhHH-HhcccccchHhHHHhcCCCccchhHHHHHHHH
Q 019025          201 SFLGLGMTTYTAWYLTIAAVVHGQVEGASHTAPTKLVLYFTGATNIL-YTFGGHAVTVEIMHAMWKPQKFKYIYLFATLY  279 (347)
Q Consensus       201 S~~g~~~~~~~~~~i~v~~~~~g~~~~v~~~~p~~~~~~f~a~g~i~-faF~gh~~~~~I~~~M~~P~~f~~v~~~s~~~  279 (347)
                      ..++..........+.+....+...++.. ..|.+ ..+..++.... +.-..-...++..+..|+|+|--..-..+...
T Consensus       138 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i  215 (386)
T TIGR02358       138 NNWSVWLLLIATLWLLVVVFSKADLSELW-NRAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFI  215 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhhc-CCCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHH
Confidence            66655443322222222222221111111 11111 22222222211 10122334788888888887754445555566


Q ss_pred             HHHHHhhhhhhhhhhcCc
Q 019025          280 VFTLTIPSATAVYWSFGD  297 (347)
Q Consensus       280 ~~~ly~~~g~~gY~afG~  297 (347)
                      ...+...+|...-.+.|+
T Consensus       216 ~~~~~~~~G~~~~~a~~~  233 (386)
T TIGR02358       216 GSCWMYFLGLAVTLATGQ  233 (386)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            666667777766666654

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>PRK11017 codB cytosine permease; Provisional

Probab=92.25  E-value=9.1  Score=37.86  Aligned_cols=168  Identities=14%  Similarity=0.075  Sum_probs=72.8

Q ss_pred             HHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHH
Q 019025          126 WFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG  204 (347)
Q Consensus       126 y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g  204 (347)
                      +..+.|..||+++.++...+. .+...| ..++....+..++...+ .+...+.++++++..+.++.. .+.+++..-++
T Consensus        73 ~~v~sR~~FG~~Gs~l~~~~~-~i~~igW~av~~~~~~~~l~~~~~-~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~~  149 (404)
T PRK11017         73 THLLARFSFGEKGSWLPSLLL-GFTQVGWFGVGVAMFAIPVVKATG-LDINLLIVLSGLLMTVTAYFG-ISALTILSRIA  149 (404)
T ss_pred             HHHHHHHHhchhHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            568999999999887633222 223333 22233222222222111 223346667777777766654 34444444433


Q ss_pred             HHHHHHHHHHHHHhhhhc--ccCCCCCCCCchhHHHHHhhhhhHHHhc-ccccchHhHHHhcCCCccchhHHHHHHHHHH
Q 019025          205 LGMTTYTAWYLTIAAVVH--GQVEGASHTAPTKLVLYFTGATNILYTF-GGHAVTVEIMHAMWKPQKFKYIYLFATLYVF  281 (347)
Q Consensus       205 ~~~~~~~~~~i~v~~~~~--g~~~~v~~~~p~~~~~~f~a~g~i~faF-~gh~~~~~I~~~M~~P~~f~~v~~~s~~~~~  281 (347)
                      ........+...+..+.+  |.. +.....|.+...+..++...+=.+ ..-.+.++.-+..|+|++--..-..+.....
T Consensus       150 ~p~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~  228 (404)
T PRK11017        150 VPAIALLGGYSVWLAVNDVGGLD-GLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGN  228 (404)
T ss_pred             HHHHHHHHHHHHHHHHhccCchh-hhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHH
Confidence            322111111111112221  111 111111211223344443322222 3345788888888877652222222333333


Q ss_pred             HHHhhhhhhhhhhcCc
Q 019025          282 TLTIPSATAVYWSFGD  297 (347)
Q Consensus       282 ~ly~~~g~~gY~afG~  297 (347)
                      ++...+|...-.+.|+
T Consensus       229 ~~~~~~G~~~a~~~~~  244 (404)
T PRK11017        229 SLMFIFGAAGAAVYGQ  244 (404)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            3344445444445554

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=91.90  E-value=14  Score=36.40  Aligned_cols=207  Identities=14%  Similarity=0.102  Sum_probs=94.4

Q ss_pred             HHhhhhhhhhhchHHHHH-HHhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhh
Q 019025           58 SCASNQVAQVLLTLPYSF-SQMG--MLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL  134 (347)
Q Consensus        58 nl~~~~iG~GiLsLP~af-~~~G--~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~  134 (347)
                      -++.-.+|+|.|=.|-.. .++|  |.++.+..++.++..-..+.+-          .++.+-       .|.++.++ +
T Consensus         3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~a----------v~~~gG-------~~~~l~~~-~   64 (378)
T TIGR00796         3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIA----------LALVGG-------GYDSLSAR-I   64 (378)
T ss_pred             HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhe----------eeecCC-------CHHHHHHH-h
Confidence            456677899999877654 4444  6667766666655543333221          111111       24566654 4


Q ss_pred             cccchhhhhhhHHHHHHHH-H--------HHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHH
Q 019025          135 GPYWKAVGLAFNCTFLLFG-S--------VIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL  205 (347)
Q Consensus       135 G~~~~~~~~~~~i~~~~~g-~--------v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~  205 (347)
                      ||+...+ . ....+++.| +        +.|-+.+...   +... .......+++++.+-+++.=+++.-|....+|-
T Consensus        65 g~~f~~l-f-~~~~~l~iGP~~aiPRtaa~s~e~~i~p~---~~~~-~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk  138 (378)
T TIGR00796        65 GKVFGIL-F-TVILYLTIGPLFAIPRTATVSFEMGIAPL---LHSP-TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGK  138 (378)
T ss_pred             ChHHHHH-H-HHHHHHHHHhchhhhHHHHHHHHHHHHhc---cCcc-cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHH
Confidence            7765543 1 122333444 1        2333322211   1111 112333455555555544444445566777776


Q ss_pred             HHHHH---HHHHHHHhhhhcccCC---C-CCCC--Cc--hhHH-HH--HhhhhhHHHhcccccchHhHHH-hcCCCcc-c
Q 019025          206 GMTTY---TAWYLTIAAVVHGQVE---G-ASHT--AP--TKLV-LY--FTGATNILYTFGGHAVTVEIMH-AMWKPQK-F  269 (347)
Q Consensus       206 ~~~~~---~~~~i~v~~~~~g~~~---~-v~~~--~p--~~~~-~~--f~a~g~i~faF~gh~~~~~I~~-~M~~P~~-f  269 (347)
                      +.+-.   ....+.+.++.+...+   + .++.  .|  ..+. .+  +-+++-+.|   |-.++-.+.+ ++|||+| .
T Consensus       139 ~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~f---g~iiv~~i~~~g~~~~~~~~  215 (378)
T TIGR00796       139 FLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVF---GIIVVNAIRSRGVTKPKKIT  215 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCCHHHHH
Confidence            65421   1122334455442211   0 1111  11  0111 11  112222222   4455566666 9999877 5


Q ss_pred             hhHHHHHHHH---HHHHHhhhhhhh
Q 019025          270 KYIYLFATLY---VFTLTIPSATAV  291 (347)
Q Consensus       270 ~~v~~~s~~~---~~~ly~~~g~~g  291 (347)
                      |+.+..+...   ...+|.-.+..|
T Consensus       216 ~~~i~~G~ia~i~l~~vY~~L~~lG  240 (378)
T TIGR00796       216 KYTIKAGLIAAVLLAFIYLSLFYLG  240 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666665532   334444444444

transmembrane helical spanners.

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=90.69  E-value=2.3  Score=43.38  Aligned_cols=76  Identities=14%  Similarity=0.102  Sum_probs=52.5

Q ss_pred             HHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025           55 AWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLG----SWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL  130 (347)
Q Consensus        55 a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~----~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~  130 (347)
                      .|-|=+.++-|+|-+-=|.--+|.||.+|.+-+++-.++.    .|.+..+       +.|++.+         |-.|++
T Consensus        57 lfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~-------SvR~~G~---------Si~~ia  120 (575)
T COG1966          57 LFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLML-------SVRHGGK---------SIGEIA  120 (575)
T ss_pred             hhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheee-------eeccCCc---------cHHHHH
Confidence            3456677899999999999999999999999887643332    2222221       2233211         468999


Q ss_pred             HhhhcccchhhhhhhH
Q 019025          131 DGLLGPYWKAVGLAFN  146 (347)
Q Consensus       131 ~~~~G~~~~~~~~~~~  146 (347)
                      ++-+|+..|.+.....
T Consensus       121 ~~~lG~~a~~~~~~~~  136 (575)
T COG1966         121 GKYLGRTAKVFFLLLA  136 (575)
T ss_pred             HHHhhhhHHHHHHHHH
Confidence            9999999887644333

>PRK15015 carbon starvation protein A; Provisional

Probab=90.35  E-value=1.5  Score=45.74  Aligned_cols=74  Identities=16%  Similarity=0.186  Sum_probs=52.0

Q ss_pred             HHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHh
Q 019025           57 FSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGF----LGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDG  132 (347)
Q Consensus        57 ~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~----l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~  132 (347)
                      -|=+.++-|+|-+-=|.--+|.||++|.+.+++-.+    +-.|.....       +.|++.+         |..|++++
T Consensus        90 GHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~-------S~R~~Gr---------Sig~ia~~  153 (701)
T PRK15015         90 GHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV-------STRRDGR---------SLGELVKE  153 (701)
T ss_pred             HHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheee-------eecCCCc---------cHHHHHHH
Confidence            356778999999999999999999999998876433    222322221       2333221         46899999


Q ss_pred             hhcccchhhhhhhH
Q 019025          133 LLGPYWKAVGLAFN  146 (347)
Q Consensus       133 ~~G~~~~~~~~~~~  146 (347)
                      -.|++++.+...+.
T Consensus       154 ~iG~~~~~lfli~i  167 (701)
T PRK15015        154 EMGPTAGVIALVAC  167 (701)
T ss_pred             HhhHHHHHHHHHHH
Confidence            99999887644333

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=88.22  E-value=17  Score=36.30  Aligned_cols=86  Identities=21%  Similarity=0.286  Sum_probs=50.2

Q ss_pred             CcchHHHHHHHhhhhhhhh-hchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHH
Q 019025           49 GGSAWDAWFSCASNQVAQV-LLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF  127 (347)
Q Consensus        49 ggS~~~a~~nl~~~~iG~G-iLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~  127 (347)
                      +-|.+||+...+.+.+|+| +-+...|.+-.|-- .++.+-+.++++.-+-+.=+-+-.+||+|.++.  +|+--.   .
T Consensus        18 ~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G--~~~GGP---~   91 (416)
T PF01235_consen   18 GISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYAEVTLAQKYREKDEDG--EYRGGP---M   91 (416)
T ss_pred             CcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHheEECCCC--CEeecH---H
Confidence            4588999999999999999 66699999999933 444454555544444332222223556554321  222110   1


Q ss_pred             HHhHhhhcccchh
Q 019025          128 EVLDGLLGPYWKA  140 (347)
Q Consensus       128 ev~~~~~G~~~~~  140 (347)
                      --.++.+|+||-.
T Consensus        92 yyi~~gl~~k~la  104 (416)
T PF01235_consen   92 YYIEKGLGSKWLA  104 (416)
T ss_pred             HHHHHHhccchHH
Confidence            2345667766554

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=86.57  E-value=6.3  Score=38.76  Aligned_cols=64  Identities=16%  Similarity=0.227  Sum_probs=42.9

Q ss_pred             HHHHhHhhhcccchhhhhhhHHHHHHHHHHH-HHHhhcccccccccccccchhhHhHHHHHHHhhc
Q 019025          126 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVI-QLIACASNIYYINDRLDKRTWTYIFGACCATTVF  190 (347)
Q Consensus       126 y~ev~~~~~G~~~~~~~~~~~i~~~~~g~v~-~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~  190 (347)
                      ..+++++.+|+.++.+ +...+.+-|+++.+ .+..+++.++...++.+.+.|.+++.++.+-++.
T Consensus       257 l~~~a~~~~G~~G~~l-l~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia~  321 (378)
T TIGR00796       257 LSAYSQHLFGSLGSFL-LGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVAN  321 (378)
T ss_pred             HHHHHHHHcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            4589999999988876 66666677777544 4445666655554456677888777665555443

transmembrane helical spanners.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=83.34  E-value=19  Score=35.29  Aligned_cols=135  Identities=16%  Similarity=0.122  Sum_probs=61.2

Q ss_pred             HHHhhhhh-hhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhHhhhc
Q 019025           57 FSCASNQV-AQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLG  135 (347)
Q Consensus        57 ~nl~~~~i-G~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~~~~G  135 (347)
                      +.+..+.+ |..+++.|-...+.|+. +....+............+.+   +++ |.+         ..|..|..++-||
T Consensus        15 ~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~---~~r-~~~---------~~T~~e~~~~Ryg   80 (406)
T PF00474_consen   15 FSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAP---RLR-RSG---------AVTIPEYLEKRYG   80 (406)
T ss_dssp             HHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHH---HHH-HTT-----------SHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHH---hhc-ccc---------hhhhhhhhhhhcC
Confidence            44455555 44678889988898975 333333333222223333322   222 111         1256799999999


Q ss_pred             ccc-hhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHH
Q 019025          136 PYW-KAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG  206 (347)
Q Consensus       136 ~~~-~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~  206 (347)
                      ++. .+....+........ ...|+...+.-++... ..+....+++.+++++..+..-=++...+...+-.+
T Consensus        81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~-gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~  152 (406)
T PF00474_consen   81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF-GIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV  152 (406)
T ss_dssp             HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred             Cchhhhhhcccccchhhhhhhhccccccccchhhcc-chhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence            987 333111111111111 2345554443333222 244444555666666667777777777766665544

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	347
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 36/222 (16%), Positives = 64/222 (28%), Gaps = 93/222 (41%)

Query: 31  DEQQQQHSMLSMKSFLWHGGSAWDAWFSCA----------SNQVAQVLLTLPYSFSQMGM 80
           +  + Q+     K  L     A+   F C           S +    ++    + S    
Sbjct: 10  ETGEHQYQY---KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 81  LSGILL-------QIF--------YGFLGSWTAY--------LISVLYVEYRSRKEKENV 117
           L   LL       Q F        Y FL   +          +++ +Y+E R R   +N 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 118 SF-KNHV--IQWFE---------------VLDGLLGPYWKAVGLAFNCTFLLFG-SVIQL 158
            F K +V  +Q +                ++DG+LG                 G + + L
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG----------------SGKTWVAL 168

Query: 159 IACAS---------NIYYINDRLDKRTWTYIFGACCATTVFI 191
             C S          I+++N              C +    +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLN-----------LKNCNSPETVL 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.12
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.95
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.2
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	96.86
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	80.08

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.12  E-value=3.2e-09  Score=103.73  Aligned_cols=235  Identities=9%  Similarity=0.001  Sum_probs=131.3

Q ss_pred             chHHHHHHHhhhhhhhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHh
Q 019025           51 SAWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL  130 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~  130 (347)
                      +.++...-.+.+++|+|++.+|...++.|.. +++..++.+++....+.    +|.|...+.|+.+-.        .+..
T Consensus        11 ~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~----~~~el~~~~p~~Gg~--------y~~~   77 (445)
T 3l1l_A           11 GLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSM----VYAKMSFLDPSPGGS--------YAYA   77 (445)
T ss_dssp             CHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHH----HHHHHHHHCCCTTTH--------HHHH
T ss_pred             cHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHH----HHHHHHccCCCCCCc--------hhhH
Confidence            5677778888999999999999999999964 66666666666655544    345666666654322        3566


Q ss_pred             HhhhcccchhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHHH---HhhccCCCCchhHHHHHHHH
Q 019025          131 DGLLGPYWKAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCA---TTVFIPSFHNYRIWSFLGLG  206 (347)
Q Consensus       131 ~~~~G~~~~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~---pl~~i~sl~~l~~~S~~g~~  206 (347)
                      ++.+||+++.. ......+ ...+...+....++.+....+..+......+.+++++   -..-.+..+....++.+...
T Consensus        78 ~~~~G~~~g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~  156 (445)
T 3l1l_A           78 RRCFGPFLGYQ-TNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV  156 (445)
T ss_dssp             HHHSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HhHcCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            88899987764 3322221 1112222333233333222121222211112222111   11112333443333332222


Q ss_pred             HHHHHHHHHHHhhhhcccCCCC----CCCCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHH
Q 019025          207 MTTYTAWYLTIAAVVHGQVEGA----SHTAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVF  281 (347)
Q Consensus       207 ~~~~~~~~i~v~~~~~g~~~~v----~~~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~  281 (347)
                      ..+...+.+.+..+.+.++++.    ...+..++..++.++....|+|.|........+|+|||+| .+|.+..+...+.
T Consensus       157 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~  236 (445)
T 3l1l_A          157 LALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAA  236 (445)
T ss_dssp             HHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHH
Confidence            1111111122222222222111    1111123557788899999999999999999999999965 8999999999999


Q ss_pred             HHHhhhhhhhhhhcCccc
Q 019025          282 TLTIPSATAVYWSFGDQL  299 (347)
Q Consensus       282 ~ly~~~g~~gY~afG~~~  299 (347)
                      ++|+...+......+.+.
T Consensus       237 ~~y~~~~~~~~~~~~~~~  254 (445)
T 3l1l_A          237 VCYVLSTTAIMGMIPNAA  254 (445)
T ss_dssp             HHHHHHHHHHHHHSCTTT
T ss_pred             HHHHHHHHHHHhcCCHHH
Confidence            999999888777776543

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.95  E-value=2.6e-08  Score=97.23  Aligned_cols=234  Identities=10%  Similarity=0.040  Sum_probs=128.4

Q ss_pred             chHHHHHHHhhhhhhhhhchHH-HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHH
Q 019025           51 SAWDAWFSCASNQVAQVLLTLP-YSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV  129 (347)
Q Consensus        51 S~~~a~~nl~~~~iG~GiLsLP-~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev  129 (347)
                      +.++...-.+.+++|+|++.+| .+.++.|- ...+..++.+++...++..+    .|...+.|+.+-.        .+.
T Consensus         9 ~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~----~el~~~~P~~Gg~--------y~~   75 (444)
T 3gia_A            9 SLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSY----TKLGAKIVSNAGP--------IAF   75 (444)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHH----HHHHTTCCCTTTH--------HHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH----HHHHhhCCCCCcH--------HHh
Confidence            5567777788899999999876 45566675 45566666666655554443    5666666654322        356


Q ss_pred             hHhhhcccc-hhhhhhhHHHH-HHHHHHHHHHhhcccccccccccccchhhHhHHHHHH---HhhccCCCCchhHHHHHH
Q 019025          130 LDGLLGPYW-KAVGLAFNCTF-LLFGSVIQLIACASNIYYINDRLDKRTWTYIFGACCA---TTVFIPSFHNYRIWSFLG  204 (347)
Q Consensus       130 ~~~~~G~~~-~~~~~~~~i~~-~~~g~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~---pl~~i~sl~~l~~~S~~g  204 (347)
                      .++.+||++ ... ......+ .......+....++.+....+..+...|..+.+.++.   -..-.+..+.......+.
T Consensus        76 ~~~~~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~  154 (444)
T 3gia_A           76 IHKAIGDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFI  154 (444)
T ss_dssp             HHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHhCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            778899863 111 1111111 1111112222222222221111122233222222111   111223334433333332


Q ss_pred             HHHHHHHHHHHHHhhhhcccCCCCCC-CCchhHHHHHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHH
Q 019025          205 LGMTTYTAWYLTIAAVVHGQVEGASH-TAPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFT  282 (347)
Q Consensus       205 ~~~~~~~~~~i~v~~~~~g~~~~v~~-~~p~~~~~~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~  282 (347)
                      ....+...+.+.+..+...++++... ..|.++..++.++....|+|.|........+|+|||+| .+|.+..+...+.+
T Consensus       155 ~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~  234 (444)
T 3gia_A          155 VLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMF  234 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHH
Confidence            22111111112223333322222222 23445667888899999999999999999999999977 89999999999999


Q ss_pred             HHhhhhhhhhhhcCcc
Q 019025          283 LTIPSATAVYWSFGDQ  298 (347)
Q Consensus       283 ly~~~g~~gY~afG~~  298 (347)
                      +|+...+......+.+
T Consensus       235 ~y~~~~~~~~~~~~~~  250 (444)
T 3gia_A          235 VYVGVAISAIGNLPID  250 (444)
T ss_dssp             HHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHhCCCHH
Confidence            9998887766555543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.20  E-value=0.00011  Score=72.55  Aligned_cols=61  Identities=8%  Similarity=0.143  Sum_probs=53.5

Q ss_pred             HHhhhhhHHHhcccccchHhHHHhcCCCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCccc
Q 019025          239 YFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLFATLYVFTLTIPSATAVYWSFGDQL  299 (347)
Q Consensus       239 ~f~a~g~i~faF~gh~~~~~I~~~M~~P~~-f~~v~~~s~~~~~~ly~~~g~~gY~afG~~~  299 (347)
                      .+.++...+|+|.|........+|+|||+| .+|.+..+...+.++|++..+......+++.
T Consensus       203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~  264 (511)
T 4djk_A          203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNE  264 (511)
T ss_dssp             TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhh
Confidence            445678889999999999999999999986 8999999999999999999888777777654

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=96.86  E-value=0.02  Score=56.89  Aligned_cols=78  Identities=17%  Similarity=0.051  Sum_probs=43.6

Q ss_pred             HHHHhHhhhcccchhhhhhhHHHHHHHH-HHHHHHhhccccccccc---ccc-cchhhHhHHHHHHHhhccCCCCchhHH
Q 019025          126 WFEVLDGLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYIND---RLD-KRTWTYIFGACCATTVFIPSFHNYRIW  200 (347)
Q Consensus       126 y~ev~~~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~---~~~-~~~~~~i~~~~~~pl~~i~sl~~l~~~  200 (347)
                      +.++.|..||+++.++. .+...+.+.| ..++....++.+.....   ..+ ...+.++++++.+++.+.. ++.++++
T Consensus        90 ~~v~~R~~FG~~Gs~i~-~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G-~~~i~~~  167 (501)
T 2jln_A           90 FTVAARMPFGIRGSLIP-ITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYG-ITFIRWM  167 (501)
T ss_dssp             HHHHTTTTSCTTTTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTH-HHHHHHH
T ss_pred             hhhhhHhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhC-HHHHHHH
Confidence            57899999999988763 3333333444 34454444444332211   122 2345666777777777543 5666655


Q ss_pred             HHHHH
Q 019025          201 SFLGL  205 (347)
Q Consensus       201 S~~g~  205 (347)
                      ..+..
T Consensus       168 ~~~~~  172 (501)
T 2jln_A          168 NVFAS  172 (501)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=80.08  E-value=47  Score=32.54  Aligned_cols=139  Identities=9%  Similarity=-0.027  Sum_probs=58.9

Q ss_pred             HHHHHHHhhhhh-hhhhchHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhcHHHHhH
Q 019025           53 WDAWFSCASNQV-AQVLLTLPYSFSQMGMLSGILLQIFYGFLGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLD  131 (347)
Q Consensus        53 ~~a~~nl~~~~i-G~GiLsLP~af~~~G~v~Giilli~~a~l~~yt~~lL~~~~~~~~~~~~~~~~~~~~~~~~y~ev~~  131 (347)
                      +-..+.+..+.+ +.-++++|-...+.|+........ .++.....+..+..   .++ |.+         +.|..|..+
T Consensus        25 ~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p---~~~-~~~---------~~T~~e~l~   90 (530)
T 3dh4_A           25 WAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLP---IFI-EKG---------IYTIPEFVE   90 (530)
T ss_dssp             HHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHH---HHH-HTT---------CCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHH---HHH-HcC---------CccHHHHHH
Confidence            444455555555 455788999888888753221111 11111111222211   111 111         225789999


Q ss_pred             hhhcccchhhhhhhHHHHHHHH-HHHHHHhhcccccccccccccchhhHhHHHHHHHhhccCCCCchhHHHHHHHH
Q 019025          132 GLLGPYWKAVGLAFNCTFLLFG-SVIQLIACASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLG  206 (347)
Q Consensus       132 ~~~G~~~~~~~~~~~i~~~~~g-~v~~li~~~~~l~~~~~~~~~~~~~~i~~~~~~pl~~i~sl~~l~~~S~~g~~  206 (347)
                      .-||++.+.+...+.+....+. ...++...+..++..- .++...-+++.++++..-+..--++...+.-.+-.+
T Consensus        91 ~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~-Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~  165 (530)
T 3dh4_A           91 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL-GIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF  165 (530)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTC------CCSHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            9999987654221111111111 1112221121121111 123333344555556666666667777776655443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00