Citrus Sinensis ID: 019031

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKLCV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccccEEEEEcEEEcccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEEEcccccEEEEEccccEEEEEEEEEccccEEEEEEcccEEEEEEEEEcccccEEEEEcccccEEEEEEEEEEccHHHHHHHccccccccEEEEEcEEcccEEEEccccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEccccccccccHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccEEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEccccccEEccccEEEcccEEEEEEEEEEccccccccccHHHEEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccEEEEEEcccEEEEEEEEccccccEEEEEcccEEEEEEEccccccccEEEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHHHccccEEEEEcccHHEEEEEEccccccccc
Coil and Loop (DISEMBL)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVsfpildfdqnyffpgasrldygsfcvrkqnysFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFldvkgsapiVDRWIRLAVENGvreldfenitdentvytlpqaifSANSVTNLRLVWCRleqpfdsimlcsLKKLTLERVCLDEQMVQKLAsecplledlcfsncwglkhlCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLfygarrprvvevarsphlkkldlVSVYFADNEfnhliskfpsledlfvtrcclpgkikisSNQLKNLLFRSCKYLKLCV
Flexible Loop (DISEMBL)
mniltelkimdETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEvarsphlkklDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIkissnqlknllfrsckylklcv
Low Complexity Region (SEG)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKimeirsfseeieiveisVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKLCV
Disordered region (IsUnstruct)
***LTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKLC*
Disordered Region (DISOPRED)
*********************ELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKLCV
Disordered Region (DISEMBL)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKLCV
Disordered Region (DISPRO)
****************MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP*******GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKLCV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNILTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKLCV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q9FJ30	540	Putative F-box/LRR-repeat	yes	no	0.628	0.403	0.296	1e-18
Q9LX48	491	Putative F-box/LRR-repeat	no	no	0.616	0.435	0.337	2e-16
Q8H1M0	442	F-box/FBD/LRR-repeat prot	no	no	0.717	0.563	0.280	9e-16
Q9LXR6	457	Putative F-box protein At	no	no	0.634	0.481	0.325	1e-15
Q9LX47	504	Putative F-box/FBD/LRR-re	no	no	0.567	0.390	0.318	2e-15
Q9LX51	520	F-box/LRR-repeat protein	no	no	0.590	0.394	0.321	2e-15
Q9LXJ6	456	F-box/FBD/LRR-repeat prot	no	no	0.587	0.447	0.307	6e-15
Q9FNI8	466	FBD-associated F-box prot	no	no	0.524	0.390	0.290	6e-15
Q6DR13	443	F-box/LRR-repeat protein	no	no	0.677	0.530	0.328	7e-15
Q8LF09	453	F-box/FBD/LRR-repeat prot	no	no	0.599	0.459	0.298	1e-14

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 128/263 (48%), Gaps = 45/263 (17%)

Query: 15  VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQN-YFFPGASR 73
           V+ DRIS LP  +I H++S+L  KE A T+VL+K+W  L    P L+FD + YF P A R
Sbjct: 11  VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARR 70

Query: 74  LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 133
             Y            S++ + FM FVD+ L    K K  +++F +     DV   + +++
Sbjct: 71  NKY------------SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCE--DVVDQSWVLE 116

Query: 134 RWIRLAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRL-----VWCRLEQ 183
            WI   ++ GV ++D       N  + ++ Y+LP  IF + ++  L++     V   +E 
Sbjct: 117 -WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE- 174

Query: 184 PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM 243
               + L  LK L L+   ++  M+ KL S C  LE+L  +N                +M
Sbjct: 175 --GGVSLPKLKTLHLDYFKIETSMLNKLLSGCHALEELVLAN----------------LM 216

Query: 244 EIRSFSEEIEIVEISVPSLQQLT 266
              S  +E   V +S+P+L++L 
Sbjct: 217 WADSSEDEACHVSVSIPTLKRLN 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX48|FBL66_ARATH Putative F-box/LRR-repeat protein At3g59230 OS=Arabidopsis thaliana GN=At3g59230 PE=4 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 111/243 (45%), Gaps = 29/243 (11%)

Query: 18  DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
           D I+ LP  +I+H++S+LS KE A TS+LS+KW   +   P LDFD     P   + D G
Sbjct: 12  DIINSLPEALIYHILSFLSTKEAAITSLLSRKWRYFFAFVPNLDFDD----PVRMQPDMG 67

Query: 78  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
                  N   +E    FMDFVD  L    +    + KF L      V G    V RWI 
Sbjct: 68  -------NQEETEIHTSFMDFVDRVLA--LRGNSHVNKFSLKCGN-GVDGVG--VTRWIL 115

Query: 138 LAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLR------LVWCRLEQPFDSIMLC 191
             +E  V ELD    +D  T Y  P  +F + S+  LR      L +  L      + L 
Sbjct: 116 NTLELSVSELDLSIASD--TTYLFPSKVFVSKSLVRLRIEARNGLAFGSLVIDVGDVSLP 173

Query: 192 SLKKLTLERVCLDEQMV--QKLASECPLLEDLCFSN-CWGLKHLCVSKASKLKIMEIRSF 248
            LK L L+ V LD Q++   KL S C +LE+L   +  W     C +    LK   +  F
Sbjct: 174 KLKTLYLDSVELDYQIICLAKLLSGCHVLEELVMIDVVWNFWESCSASIPTLK--RLTFF 231

Query: 249 SEE 251
           +EE
Sbjct: 232 TEE 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1M0|FDL16_ARATH F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana GN=At2g26030 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 137/296 (46%), Gaps = 47/296 (15%)

Query: 18  DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
           DRI ELP  ++  ++SYL   +  +TSVLSK+W  L++  P+LD   +  FP     +Y 
Sbjct: 4   DRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSD-FPDE---NYA 59

Query: 78  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
           SF            +  F++F   S +R  KLK+   ++    T+ D + +      W+ 
Sbjct: 60  SF------------IDNFLEFNRKSRMRKFKLKY--DEY----TYDDDRLAG-----WVV 96

Query: 138 LAVENGVRELDFENITDENTVYT-LPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 196
             V+ G++ LD +       V   +PQ I+  N++ +L LV   +E P   + L SLK +
Sbjct: 97  TTVDRGIQHLDAKGFETNMCVREFMPQNIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIM 156

Query: 197 TLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEI 254
            LE V    D  +++K+ S CP+LED          +L V +  +++ + +RSF    E 
Sbjct: 157 HLEDVWYYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQFLRVRSLSLRSFRLTFEY 216

Query: 255 --------VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFN 302
                   VEI  P L+ L    +   +   + V     L  +D+      D+EFN
Sbjct: 217 SVSCTYFSVEIDAPRLEYLN---FNDDQSDTIVVKNMTSLSMIDI------DSEFN 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 119/255 (46%), Gaps = 35/255 (13%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDF-DQNYFFPGASRLD 75
           MD  S+LP  +I H++S L  KE A TSVL+KKW  L+   P LDF D ++  P   + +
Sbjct: 6   MDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGKRE 65

Query: 76  YGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK-GSAPI-VD 133
                           ++ FMDFVD  L    +    I+KF      L+VK G  P  VD
Sbjct: 66  KDGI------------LRSFMDFVDRVLA--LQGASPIKKFS-----LNVKTGVDPDRVD 106

Query: 134 RWIRLAVENGVREL----DFENITDENTVYTLPQAIFSANSVTNLRLVW-CRLEQPFDSI 188
           RWI   ++ GV  L    DFE        Y+LP  I  + ++  L+  +   L    D +
Sbjct: 107 RWICNVLQRGVSHLALFMDFEE------EYSLPYEISVSKTLVELKTGYGVDLYLWDDDM 160

Query: 189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRS 247
            L  LK L LE V       Q L   CP+LE+L   N  W  +++ +S +S LK ++I S
Sbjct: 161 FLPMLKTLVLESVEFGRGQFQTLLPACPVLEELMLLNMEWKDRNVILS-SSSLKNLKITS 219

Query: 248 FSEEIEIVEISVPSL 262
               +  +    P+L
Sbjct: 220 EDGCLGTLSFDTPNL 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX47|FDL46_ARATH Putative F-box/FBD/LRR-repeat protein At3g59240 OS=Arabidopsis thaliana GN=At3g59240 PE=4 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 48/245 (19%)

Query: 10  MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP 69
           MD+ +   D IS+LP  +I HL+S++  KE A TS+LS+KW  L+   PILDFD + +  
Sbjct: 1   MDD-ICCKDIISDLPEALICHLLSFVPTKEAALTSLLSEKWRYLFAFAPILDFDDSVWM- 58

Query: 70  GASRLDYGSFCVRKQNYSFSETVKKFMDFVD--------ASLVRFC-KLKFCIQKFRLFL 120
             S L Y            +E  +KFMDFVD        ++LVRF    +  I +  +F 
Sbjct: 59  -QSPLVY-----------MNEVHRKFMDFVDRVLGLQGNSTLVRFSLNCRNGIDRECIF- 105

Query: 121 TFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR 180
                        RWI   +E GV +LD       N   ++P ++F + S+  LR+   R
Sbjct: 106 -------------RWISNVIERGVSDLDLGGNFVSNR--SMPSSVFVSKSLVKLRI---R 147

Query: 181 LEQ----PFDSIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCV 234
            E       + + L  LK L L  +     +  + KL S C +LEDL  S+ W   +   
Sbjct: 148 TENCTIIDLEDVFLPKLKTLDLSSIWFRDGDTCLLKLISGCQVLEDLTMSDLWWDGYWNR 207

Query: 235 SKASK 239
           S +SK
Sbjct: 208 SMSSK 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 104/233 (44%), Gaps = 28/233 (12%)

Query: 15  VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRL 74
           V+ DRIS LP  ++ H++S+L  KE A TSVLSKKW  L+     LDFD + +  G  + 
Sbjct: 4   VSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKS 63

Query: 75  DYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDR 134
           D              E  + FM+FVD  L    +    + KF L  +  DV  +   V  
Sbjct: 64  DV-------------ELSRSFMEFVDRVLA--LQGNGSVNKFSLECSNYDVDLAR--VTG 106

Query: 135 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR---LEQPFDSIMLC 191
           WI   +  GV ELD   +      Y LP  IF + ++  L+L       L      + L 
Sbjct: 107 WILNVLGRGVSELDLSILE-----YPLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLP 161

Query: 192 SLKKLTLERVCLDEQMVQ--KLASECPLLEDLCFSN-CWGLKHLCVSKASKLK 241
            LK L ++ V + E+     KL S CP+LE+L   N  W     C      LK
Sbjct: 162 KLKTLYIDCVDVQERGFGFVKLLSGCPVLEELVLMNIGWENWKFCSVSVKTLK 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680 OS=Arabidopsis thaliana GN=At3g52680 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 118/260 (45%), Gaps = 56/260 (21%)

Query: 14  VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASR 73
           V+  DRISELP  ++  ++S L    V  TSVLSK+W  L+   P L+FD +        
Sbjct: 17  VMGKDRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSD-------- 68

Query: 74  LDYGSFCVRKQNYSFSETV-KKFMDFVDASLVRFCKLKFCIQKFRL-FLTFLDVKGSAPI 131
            DY S     ++Y+FSE V K F+      L          + FRL F+ F  V      
Sbjct: 69  -DYES-----EHYTFSEIVCKSFLSHKAPVL----------ESFRLKFVNFNPVD----- 107

Query: 132 VDRWIRLAVENGVRELDFENITDE---NTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSI 188
           +  W+ +A    +REL  +    E      +T P ++ + N++  L+LV C L      +
Sbjct: 108 IGLWVGIAFSRHLRELVLDFYPAELGKGVTFTFPSSLCTCNTLETLKLVLCILVDIPSPV 167

Query: 189 MLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 247
           ++ SL+ L LE V   DE  V+ L S CP LE+L                        R 
Sbjct: 168 LMKSLRTLHLEFVRYKDESSVRNLLSGCPGLEELRL---------------------YRG 206

Query: 248 FSEEIEIVEISVPSLQQLTL 267
              +I++  I VPSLQ+LT+
Sbjct: 207 DDSDIKVFTIEVPSLQRLTI 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 28/210 (13%)

Query: 14  VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASR 73
           +   D IS+LP  +I  ++ YL  K++ RTS LS +W  L++  P LD D   F      
Sbjct: 24  MAGEDLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEF------ 77

Query: 74  LDYGSFCVRKQNY-SFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIV 132
                     Q+Y +F   + KF+DF           K C+ K +  L+        P V
Sbjct: 78  ----------QDYNAFVGFMNKFIDFSGEE-------KICLDKLK--LSSRKTVNDLPCV 118

Query: 133 DRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCS 192
            RWI   V   ++ LD E + +   +  +P +++  +++ NLRL    L + F+++ L  
Sbjct: 119 TRWIDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGK-FEAVSLPC 177

Query: 193 LKKLTLER-VCLDEQMVQKLASECPLLEDL 221
           LK + LE  V  ++ +++ L S CP+L+DL
Sbjct: 178 LKTMRLEENVYANDVVLESLISSCPVLKDL 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DR13|FBL38_ARATH F-box/LRR-repeat protein At2g42720 OS=Arabidopsis thaliana GN=At2g42720 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 129/271 (47%), Gaps = 36/271 (13%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MDRIS LP  I+ H++S+LS KE A TS LS +W  ++V  P L             LDY
Sbjct: 1   MDRISSLPDEILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSL------------HLDY 48

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFC-KLKFCIQKFRLFLTFLDVKG--SAPIVD 133
                 +Q+    E  ++F+DFVD     F  K    I+K  L +   D +   +   V 
Sbjct: 49  A-----RQH----ENPREFIDFVDFVNTLFNRKGNSPIKKLALKIHLKDNQSLQNQTHVQ 99

Query: 134 RWI-RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWC-RLEQPFDSIMLC 191
            WI R+    GV +LD   IT +     +P  IF +N++  LRL     ++   +++ L 
Sbjct: 100 SWIHRVLSRGGVTDLDL-FITFKGKFQLVPLLIFKSNTLVKLRLGRGFTIKLCHENVYLP 158

Query: 192 SLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKAS-KLKIMEIRS 247
            LK L L+ V    D  + + L   CPLLE+L   +  W  K  C S +S  LK + IR 
Sbjct: 159 MLKTLCLDTVDFDGDHNVFETLLPRCPLLEELVLEDQRW--KQWCGSVSSPSLKRLRIRF 216

Query: 248 FSEEIEIVEISVPSLQQLTL-LFYGARRPRV 277
           F   I I+ + VP L  L L   +G++   V
Sbjct: 217 F--HIPIISLDVPGLVYLELSCIFGSKYANV 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160 OS=Arabidopsis thaliana GN=At4g00160 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 118/258 (45%), Gaps = 50/258 (19%)

Query: 14  VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASR 73
           V+  DRISELP  ++  ++S+L  K V  TSV SK+W  L+   P L+FD          
Sbjct: 12  VMGKDRISELPDALLIKILSFLPTKIVVATSVFSKQWRPLWKLVPNLEFDSE-------- 63

Query: 74  LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPI-V 132
            DY      K+ Y+FSE V K      A ++   +L+F  +K              P+ +
Sbjct: 64  -DYDD----KEQYTFSEIVCKSFLSHKAPVLESFRLEFESEKV------------DPVDI 106

Query: 133 DRWIRLAVENGVRELDF-ENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLC 191
             W+ +A    +REL      T   T +  P ++ + N++  LRLV   L      +++ 
Sbjct: 107 GLWVGIAFSRHLRELVLVAADTGTGTAFKFPSSLCTCNTLETLRLVLLILVDISSPVVMK 166

Query: 192 SLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSE 250
           SL+ L LE V   DE  ++ L S CP+LE+L                     + IR    
Sbjct: 167 SLRTLHLELVSYKDESSIRNLLSGCPILEEL---------------------LVIRGEDS 205

Query: 251 EIEIVEIS-VPSLQQLTL 267
           +IE+  I  VPSL++LT+
Sbjct: 206 DIEVFTIDEVPSLKRLTI 223

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
224121624	528	predicted protein [Populus trichocarpa]	0.919	0.604	0.380	3e-49
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.870	0.643	0.326	8e-38
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.870	0.643	0.326	1e-37
255590973	337	conserved hypothetical protein [Ricinus	0.763	0.786	0.366	2e-36
356557323	833	PREDICTED: uncharacterized protein LOC10	0.893	0.372	0.335	5e-33
449458245	575	PREDICTED: uncharacterized protein LOC10	0.896	0.540	0.336	3e-32
449476919	575	PREDICTED: uncharacterized protein LOC10	0.896	0.540	0.333	5e-32
224119688	563	f-box family protein [Populus trichocarp	0.916	0.564	0.329	1e-30
357454743	761	Agglutinin alpha chain [Medicago truncat	0.913	0.416	0.339	8e-30
357503353	557	F-box/LRR-repeat protein [Medicago trunc	0.902	0.561	0.328	2e-29

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 188/331 (56%), Gaps = 12/331 (3%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MD IS  P  ++HH++S+L  K+V RTS+LSK+W  +  ++PILDF        +S   Y
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 136
                   +  + + + KFM++VD S+ RFCK KF +QKF+LFL   D++ S+ + D+W+
Sbjct: 61  S----ENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLELSSHL-DKWV 115

Query: 137 RLAVENGVRELDF----ENITDENTVYTLPQAIFSANSVTNLRLVWC--RLEQPFDSIML 190
           +  +ENG +E+DF             Y++P AIF+A SVT L+L  C  +LE+ F  I L
Sbjct: 116 QKVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEESF-CIKL 174

Query: 191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSE 250
            SL+KL L+ V +D+ +++++ + CPLLED+    CWGLK + V +  +LK  EI S   
Sbjct: 175 HSLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHLS 234

Query: 251 EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS 310
           + E VEI  PSL+     F       +V V     LK L L   +  +     L+ KF  
Sbjct: 235 KPESVEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELLLQDLVPKFHV 294

Query: 311 LEDLFVTRCCLPGKIKISSNQLKNLLFRSCK 341
           LE L V  C +  K+KISS +LK+L   SC+
Sbjct: 295 LESLRVGDCPVLKKVKISSWRLKSLEIHSCE 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 181/325 (55%), Gaps = 23/325 (7%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MD ISELP  I+ H++S+LS K++ +T++LSK+W  L+++FP  +FD+N FF   S+L  
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKN-FFHIESKL-- 57

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 136
                  QN  F       ++FV+ +L +   LK C++KF+L   F +   S  +VDRWI
Sbjct: 58  -------QNKRF-----HLINFVEQTLKQ---LK-CLRKFKLHTDFPE-PNSMVVVDRWI 100

Query: 137 RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 196
              +E+GV+EL+     +    Y LPQ +F+  S+T L +  C+L    D   L S+K +
Sbjct: 101 DYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSV 160

Query: 197 TLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE 256
           +L  V  +++ V++L S CP ++ +   +C GL++L + + ++L  ME+++ S    + E
Sbjct: 161 SLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNS---GLYE 217

Query: 257 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 316
               ++      F G  +P  + ++   +LK L L  V   D+ FN   S+FP LE L +
Sbjct: 218 FGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILAL 277

Query: 317 TRCCLPGKIKISSNQLKNLLFRSCK 341
           + C +   ++ISS+ LK  +   C+
Sbjct: 278 SYCHMLESLRISSSHLKKFILCGCE 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 180/325 (55%), Gaps = 23/325 (7%)

Query: 17  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
           MD ISELP  I+ H++S+LS K++ +T++LSK+W  L+++FP  +FD+N FF   S+L  
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKN-FFHIESKL-- 57

Query: 77  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 136
                  QN  F       ++FV+ +L +   LK C++KF+L   F +   S  +VDRWI
Sbjct: 58  -------QNKRF-----HLINFVEQTLKQ---LK-CLRKFKLHTDFPE-PNSMVVVDRWI 100

Query: 137 RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 196
              +E+GV+EL+     +    Y LPQ +F+  S+T L +  C+L    D   L S+K +
Sbjct: 101 DYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSV 160

Query: 197 TLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE 256
           +L  V  +++ V++L S CP ++ +   +C GL+ L + + ++L  ME+++ S    + E
Sbjct: 161 SLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNS---GLYE 217

Query: 257 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 316
               ++      F G  +P  + ++   +LK L L  V   D+ FN   S+FP LE L +
Sbjct: 218 FGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILAL 277

Query: 317 TRCCLPGKIKISSNQLKNLLFRSCK 341
           + C +   ++ISS+ LK  +   C+
Sbjct: 278 SYCHMLESLRISSSHLKKFILCGCE 302

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590973|ref|XP_002535407.1| conserved hypothetical protein [Ricinus communis] gi|223523200|gb|EEF26976.1| conserved hypothetical protein [Ricinus communis]

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/273 (36%), Positives = 160/273 (58%), Gaps = 8/273 (2%)

Query: 6   ELKIMDETVVAMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVSFPILDFDQ 64
           ELK MD    ++D IS+LP  +IHH++S L   K+ ARTS+LSK+W  ++ S+ ILDFDQ
Sbjct: 58  ELKAMDRRSDSIDLISQLPNHVIHHILSLLRCKKDAARTSILSKRWRAIWASYLILDFDQ 117

Query: 65  NYFFPGASRLDY-GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFL 123
             F     ++    S   +++    ++  + F  FV+ +L    +    IQKF+L LT  
Sbjct: 118 RKFQKQEKKVRRLSSKSKKRKEVEINKKNEMFRAFVENTLRTHIEQDSGIQKFKLHLTSY 177

Query: 124 DVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ 183
           +V+ SA  VD+WI  A  N +++LD    + ++  Y LPQ +F+A+++T LR+  C+L  
Sbjct: 178 NVELSAH-VDQWIGFATTNNIKDLDLYIPSKKDRCYNLPQTVFAASTITALRISGCKLRT 236

Query: 184 PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM 243
             D I L +L+KL   ++ +D QM+Q L   CPL++DL    C GLK L +S ++KL  +
Sbjct: 237 CID-IKLSNLQKLCFAKLRVDGQMIQNLMLSCPLIDDLRLIYCTGLKTLLLS-SNKLYRV 294

Query: 244 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR 276
           +I  F   ++ VE+  P+LQ  T  ++G +  R
Sbjct: 295 DIH-FCHGLKNVEVLSPNLQ--TFWYHGKKSTR 324

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 176/337 (52%), Gaps = 27/337 (8%)

Query: 16  AMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRL 74
           ++DRIS+ P  +IHH++S+L +  +  RTSVLSK+W +L+ S+ +L FD+  F   A+++
Sbjct: 158 SVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKF---AAKI 214

Query: 75  DYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDR 134
            +            S     F D+V  SL+        I+K  L +T  D+   AP ++ 
Sbjct: 215 GH---------EDSSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLEL 265

Query: 135 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLK 194
           W+ +A+   ++ELD          YTLPQ +FS+ ++T +RL  C+L    ++I L  L+
Sbjct: 266 WLNIAIYRNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGT-CNNIKLPYLQ 324

Query: 195 KLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEI 254
           KL L ++ L E  +Q L S C  +EDL    C GLKHL VS   +LK  EI     +++ 
Sbjct: 325 KLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIH-HCIQLKK 383

Query: 255 VEISVPSLQQLTLLFYGAR-RPRVVEVARSPHLKKLDL----VSVYFADNEFNHLISKFP 309
           VEIS P+L   T  + G +  P  V +     LK+L L    V+  F +N+F    S FP
Sbjct: 384 VEISAPNLD--TFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQF----SNFP 437

Query: 310 SLEDLFVTRCCLPGK-IKISSNQLKNLLFRSCKYLKL 345
            LE L ++      + I IS+  L+    + CK L +
Sbjct: 438 LLEKLDLSMSNNKSRFIIISNPHLEKFTLKGCKKLGI 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 177/342 (51%), Gaps = 31/342 (9%)

Query: 9   IMDETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYF 67
           +  E V  +D IS+LP   IHH++S+L SAKE ARTS+LSKKW   + SF +L F++  +
Sbjct: 45  VEQEVVEPVDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSY 104

Query: 68  FPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 127
                 L+       KQ        +KF+D +D SL         I K  L +T   V  
Sbjct: 105 LKAEVGLNSD-----KQR-------QKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVSH 152

Query: 128 SAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRL---VWCRLEQP 184
               + RW+ +A ENG+ ELD  ++        +P  + S  +++ LRL    W      
Sbjct: 153 ----LKRWVDMAGENGLGELDI-HVETTRKRCKVPLCMHSIKTLSGLRLQGLYW----SS 203

Query: 185 FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244
           F+++   +L+KL L R+ +D Q++QKL S CPLL DL    C GL +L +S + KL+ ++
Sbjct: 204 FEALEFNNLQKLYLRRLHVDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVD 263

Query: 245 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV--VEVARSPHLKKLDLVSVYFADNEFN 302
           +      +  VE+ VPSL+     +Y A++     + +     LK+L L      +N FN
Sbjct: 264 LYQ-CHFLRRVELQVPSLKT---FWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFN 319

Query: 303 HLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK 344
            L+  FP LE L ++RC     I I++ +L++L  R CK LK
Sbjct: 320 KLLVSFPVLEKLNLSRCDKLQIIGIANVELQSLGLRCCKRLK 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476919|ref|XP_004154876.1| PREDICTED: uncharacterized protein LOC101224445 [Cucumis sativus]

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 177/342 (51%), Gaps = 31/342 (9%)

Query: 9   IMDETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYF 67
           +  E V  +D IS+LP   IHH++S+L SAKE ARTS+LSKKW   + SF +L F++  +
Sbjct: 45  VEQEVVEPVDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSY 104

Query: 68  FPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 127
                 L+       KQ        +KF+D +D SL         I K  L +T   V  
Sbjct: 105 LKAEVGLNSD-----KQR-------QKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVSH 152

Query: 128 SAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRL---VWCRLEQP 184
               + RW+ +A ENG+ ELD  ++        +P  + S  +++ LRL    W      
Sbjct: 153 ----LKRWVDMAGENGLGELDI-HVETTRKRCKVPLCMHSIKTLSGLRLQGLYW----SS 203

Query: 185 FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME 244
           F+++   +L+KL L R+ +D Q++QKL S CPLL DL    C GL +L +S + KL+ ++
Sbjct: 204 FEALEFNNLQKLYLRRLHVDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVD 263

Query: 245 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV--VEVARSPHLKKLDLVSVYFADNEFN 302
           +      +  +E+ VPSL+     +Y A++     + +     LK+L L      +N FN
Sbjct: 264 LYQ-CHFLRRIELQVPSLKT---FWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFN 319

Query: 303 HLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK 344
            L+  FP LE L ++RC     I I++ +L++L  R CK LK
Sbjct: 320 KLLVSFPVLEKLNLSRCDKLQIIGIANVELQSLGLRCCKRLK 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 176/349 (50%), Gaps = 31/349 (8%)

Query: 10  MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP 69
           M   V A DRIS LP  ++H+++SYLS + V R SVLSK W+++  SFP+ DF ++    
Sbjct: 27  MGIRVDASDRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPVSDFSEDVLLL 86

Query: 70  GASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSA 129
           G             + Y   +   KF+DFV  SL+          KFRL    +D+    
Sbjct: 87  G-------------KRYEIQDWKNKFIDFVQDSLLAQHHHNTRSHKFRL---SMDLDSYD 130

Query: 130 PIV----DRWIRLAVENGVRELD--FENITDENTVYTLPQAIFSANSVTNLRLVW-CRLE 182
           P +    D  + LA + GV E D  F+NI+     Y LP+A+ SA  +T LRL    +L 
Sbjct: 131 PQLTSRADHLLELATKCGVYEFDLNFQNISH----YCLPRALLSAEEITVLRLNGNYKLS 186

Query: 183 QPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKI 242
            P D+I   SL+ L+L  V +DE ++Q L   CPL+E L    C+G+K + +S   KLK 
Sbjct: 187 LPRDAINWPSLRVLSLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKE 246

Query: 243 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVA--RSPHLKKLDLVSVYFADNE 300
           +E+      +E +EI VPSL+         +    +++   R+  L KL   ++     +
Sbjct: 247 VEVNEGDSVLERMEIHVPSLRTFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQ 306

Query: 301 -FNHLISKFPSLEDLFVT-RCCLPGKIKISSNQLKNLLFRSCKYLKLCV 347
            F  LI++FP+L+ L +        +IKIS+ QL+ L   S    K+ +
Sbjct: 307 VFQDLIAQFPALKVLALNCYATSVSRIKISNPQLEKLQLWSSALTKVTI 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 181/351 (51%), Gaps = 34/351 (9%)

Query: 2   NILTELKIMDETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPIL 60
           +++  ++ M + V ++DRIS+LP  +I+H++S+L + ++  RT  LSK+W  L+ S+  L
Sbjct: 26  SVVENVEQMIQIVESVDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAAL 85

Query: 61  DFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFL 120
            F +  F  G    D GS    K+N         F   V  SL  +      IQK  L +
Sbjct: 86  IFYEQKFAAGIGPED-GS---NKENL--------FRQHVADSLHTYLANNLQIQKLLLHM 133

Query: 121 TFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR 180
              D+   AP+VD W+  AV   ++E+D +    +   YTLP+ + S+ ++T LRL  C 
Sbjct: 134 MSFDLT-DAPLVDSWLTSAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCI 192

Query: 181 LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKL 240
           L +   +IML  L+KL L +V L EQ+V  L S CP +EDL F  C GLK L +     L
Sbjct: 193 LRR-CGNIMLPRLQKLYLRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFLYI-HCDSL 250

Query: 241 KIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDL----VSVY 295
             +EI +   +++   I  P+L   T  F G +  P  V +     LKKL L    VS  
Sbjct: 251 SRLEIHN-CNQLKTAYIFAPNLD--TFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRD 307

Query: 296 FADNEFNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYL 343
           F +N+FN    KFP LE L +   C+  K+K   I +  L+ ++ + CK L
Sbjct: 308 FCENQFN----KFPLLEKLDL---CIADKMKSITIFNRCLQRIVLKGCKKL 351

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503353|ref|XP_003621965.1| F-box/LRR-repeat protein [Medicago truncatula] gi|357503387|ref|XP_003621982.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496980|gb|AES78183.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496997|gb|AES78200.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 163/350 (46%), Gaps = 37/350 (10%)

Query: 18  DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
           DR+S LP  I+HH++S L  K+ ARTSVLSK W   + +FPIL    N F         G
Sbjct: 19  DRLSILPKIILHHILSRLPEKDAARTSVLSKAWADTWFTFPILSISDNKF--------TG 70

Query: 78  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
            F +   +       KKF+D+V  +L RFC     I++ ++ L   ++   +  VD W++
Sbjct: 71  WFPLSIDD--VKRKRKKFIDYVTRTLSRFCDQGLAIKECKIILNRFELHYMSKHVDLWLK 128

Query: 138 LAVENGVRELDF-----ENITDE--NTVYTLPQAIFSANSVTNLRL-VWCRLEQPF--DS 187
            A  +GV  ++       N  +E     Y LP  +  A S+T + L    R++Q F   S
Sbjct: 129 SASGSGVEVVELCLPCGPNYIEEGHGKCYVLPTGVIEAKSLTKVVLKGGIRVDQAFMNQS 188

Query: 188 IMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---------KHLCVSKA 237
           I   SL+ L+L  V L DE  ++ L S CP +E +   +C  L         K L +   
Sbjct: 189 IKFFSLRVLSLWIVLLEDEHAIEHLISCCPFIEHITLKHCSVLSPGGGVKLMKSLSMHGL 248

Query: 238 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV--- 294
            KLK +++    E    V I VPSL+ L         P  +      +LK LDL S+   
Sbjct: 249 PKLKTVDVHGIQE----VYIDVPSLEYLYYCHDVLNAPYKIHFDSCRNLKGLDLFSLEGN 304

Query: 295 YFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK 344
              D  F  L SKFP LE L   +C +   I ISS QLK L    C  +K
Sbjct: 305 TITDKWFLELFSKFPFLERLKFVKCTMSETINISSVQLKVLELSGCHNMK 354

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2152950	540	AT5G41840 [Arabidopsis thalian	0.567	0.364	0.309	1.4e-17
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.250	0.194	0.370	5.4e-14
TAIR|locus:2085013	532	AT3G42770 "AT3G42770" [Arabido	0.524	0.342	0.325	6.5e-14
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.144	0.111	0.5	1.9e-13
TAIR|locus:2126096	507	AT4G00320 "AT4G00320" [Arabido	0.559	0.382	0.301	1.9e-13
TAIR|locus:2081247	464	AT3G59160 "AT3G59160" [Arabido	0.619	0.463	0.317	3.6e-13
TAIR|locus:2160205	472	AT5G54820 [Arabidopsis thalian	0.596	0.438	0.258	4e-13
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.389	0.296	0.270	8.9e-13
TAIR|locus:2052362	443	AT2G42720 "AT2G42720" [Arabido	0.570	0.446	0.326	1.3e-12
TAIR|locus:2016630	505	AT1G58310 [Arabidopsis thalian	0.547	0.376	0.319	1.3e-12

TAIR|locus:2152950 AT5G41840 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 69/223 (30%), Positives = 114/223 (51%)

Query:    15 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQN-YFFPGASR 73
             V+ DRIS LP  +I H++S+L  KE A T+VL+K+W  L    P L+FD + YF P A R
Sbjct:    11 VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARR 70

Query:    74 LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 133
               Y            S++ + FM FVD+ L    K K  +++F +     DV   + +++
Sbjct:    71 NKY------------SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCE--DVVDQSWVLE 116

Query:   134 RWIRLAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRLVW---CRLEQPF 185
              WI   ++ GV ++D       N  + ++ Y+LP  IF + ++  L++ +     ++   
Sbjct:   117 -WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE- 174

Query:   186 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-W 227
               + L  LK L L+   ++  M+ KL S C  LE+L  +N  W
Sbjct:   175 GGVSLPKLKTLHLDYFKIETSMLNKLLSGCHALEELVLANLMW 217

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.4e-14, Sum P(3) = 5.4e-14
 Identities = 33/89 (37%), Positives = 48/89 (53%)

Query:   135 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDS-IMLCSL 193
             WI  A   GVR+L  ++   E+   TLP  +FS N    +  + C ++  F S + L SL
Sbjct:   110 WIATAFARGVRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPSRVCLKSL 169

Query:   194 KKLTLERVCL-DEQMVQKLASECPLLEDL 221
             +KL L++V   DE+ V  L   CP L+DL
Sbjct:   170 RKLYLDQVHFKDEESVCNLLCGCPSLQDL 198

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085013 AT3G42770 "AT3G42770" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
 Identities = 66/203 (32%), Positives = 97/203 (47%)

Query:    23 LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVR 82
             LP  ++  ++S+L  KE   TS+LSK+W  L+   P LDFD +                +
Sbjct:     4 LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFDNSLLLQS-----------K 52

Query:    83 KQNYSFSETVKKFMDFVDASL-VRFCK-LKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAV 140
             K+ ++     K F+ FVD++L ++  K +K    KF+   T  DV G    V+RWI  A+
Sbjct:    53 KRKWNMRNIQKSFVGFVDSTLALQGGKGIKSFSLKFKE--TLGDVNGEVD-VNRWICNAL 109

Query:   141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVW--CRLEQPFDSIMLCSLKKLTL 198
             E+GV EL      D      LP  IF++  +  L LV   C    P + I L SLK L L
Sbjct:   110 EHGVSELHLR--IDYTKRCHLPSEIFTSTKLVKLSLVTQSCFPVVP-NCISLPSLKVLFL 166

Query:   199 ERVCLDEQMVQKLASECPLLEDL 221
             + +  +        + CP LEDL
Sbjct:   167 DSIWFEVPQFLIFLTACPALEDL 189

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query:    18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYF 67
             DRIS LP  ++  ++S LS KE   TSVLSK+W  L++  P+LD D N F
Sbjct:    15 DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNF 64

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126096 AT4G00320 "AT4G00320" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 66/219 (30%), Positives = 106/219 (48%)

Query:    18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 77
             D IS LP  +I H++S+L  K  A T+VL+K+W  L    P LDFD+++      R D  
Sbjct:    13 DGISGLPDAMICHILSFLPTKVAASTTVLAKRWKPLLAFMPNLDFDESF------RFDPR 66

Query:    78 SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 137
               C  ++  S S     FM  VD+ L    +    + KF  ++    V+ ++ +   WI 
Sbjct:    67 MTCEERRKGSES-----FMLVVDSVLALQAEANATLNKF--YVKCEGVEQNSVL--EWIP 117

Query:   138 LAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRLVW---CRLEQPFDSIM 189
               ++ GV ++D +          +T Y LP  IF + ++  L++ +     +    D + 
Sbjct:   118 KVLKRGVLDIDLQIPSSRGFGSNSTFYPLPSEIFVSKTLVRLKIQFQDGANVNVEGD-VS 176

Query:   190 LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-W 227
             L  LK L L+ V +D +M+QKL S C  LE+L   N  W
Sbjct:   177 LPMLKTLHLDYVKMDTRMLQKLLSGCHTLEELLLMNLIW 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2081247 AT3G59160 "AT3G59160" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 75/236 (31%), Positives = 106/236 (44%)

Query:     4 LTELKIMDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFD 63
             + + K MD    + D I++LP  ++ H++SYL+ KE A TS+LS++W  L    P L+FD
Sbjct:     1 MVDSKRMDSG--SKDMINDLPDALLCHVLSYLTTKEAASTSLLSRRWRYLLAFVPNLEFD 58

Query:    64 QNYFFPGASRLDYGSFCVRKQNYSFSETV----KK----FMDFVDASLVRFCKLKFCIQK 115
              + +     R+        K    F  TV    KK    F DFVD  L    +    + K
Sbjct:    59 DSAYLHRDKRVKNPLH--EKGLVGFVLTVDDKRKKLSTSFPDFVDRILD--LQGNSPLDK 114

Query:   116 FRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLR 175
             F L +           V  WI   +  GV +L    + D N   +LP  IF   ++  L 
Sbjct:   115 FSLKMVDDHDPVDPDCVAPWIHKVLVRGVSDLHL--VIDMNEWTSLPAKIFLTETLVKLT 172

Query:   176 LVWCRLEQPFD--SIMLCSLKKLTLERVCLDEQMV--QKLASECPLLEDLCFSNCW 227
             L   R   P D   + L  LK L LE V  DE+ +   KL S CP LE+L   + W
Sbjct:   173 LK-IRDGPPIDVKHVHLPKLKTLHLESVMFDEEDIGFSKLLSGCPELEELVLHHIW 227

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160205 AT5G54820 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
 Identities = 56/217 (25%), Positives = 103/217 (47%)

Query:    15 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDF-DQNYFFPGASR 73
             +  DR+S LP  ++  ++S+L  KE  RTSVLSK+W  L +    L F + +Y  P  + 
Sbjct:     4 IQQDRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLCLETTNLSFKESDYVNPDITD 63

Query:    74 LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 133
              +Y      +   SF  +V K++      +V     + C      F   +D      +  
Sbjct:    64 AEYSRIVAYR---SFFCSVDKWVSITQHQVVE--SFEICFSHLVGFEDKIDALIEYAVST 118

Query:   134 RWIRLAVE-NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCS 192
             R   L V+ +        +I+  + +YTLP++++S  ++ +L++  C+ + P   +    
Sbjct:   119 RVKNLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSLTTLESLKIYGCKFD-PSKFVNPVL 177

Query:   193 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL 229
             L+ L++  V L+   +  L S+ P L+ L   NCWG+
Sbjct:   178 LRSLSIGWVRLEN--LHSLLSKSPSLQSLSIKNCWGV 212

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
 Identities = 39/144 (27%), Positives = 70/144 (48%)

Query:    98 FVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENT 157
             F+D +L R+   K  + +F L  + ++   + P ++ WI+ A+   V  L  +       
Sbjct:    84 FIDETLTRYTASK--MMRFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVAN 138

Query:   158 VYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPL 217
              +  P   F  NS  +L+ +   L+     I +C LKKL L    L ++ +  +   CP+
Sbjct:   139 KFKFPD-FFHINS--SLKQLTVVLDFSDTMIAIC-LKKLYLSTCLLSDESMANILFGCPI 194

Query:   218 LEDLCFSNCWGLKHLCVSKASKLK 241
             LE L   +C GL+ L +SK+ +L+
Sbjct:   195 LESLTLDHCGGLRVLDLSKSLRLR 218

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2052362 AT2G42720 "AT2G42720" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 75/230 (32%), Positives = 109/230 (47%)

Query:    17 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 76
             MDRIS LP  I+ H++S+LS KE A TS LS +W  ++V  P L             LDY
Sbjct:     1 MDRISSLPDEILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSL------------HLDY 48

Query:    77 GSFCVRKQNYSFSETVKKFMDFVDASLVRFC-KLKFCIQKFRLFLTFLDVKG--SAPIVD 133
                   +Q+    E  ++F+DFVD     F  K    I+K  L +   D +   +   V 
Sbjct:    49 A-----RQH----ENPREFIDFVDFVNTLFNRKGNSPIKKLALKIHLKDNQSLQNQTHVQ 99

Query:   134 RWI-RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLV-WCRLEQPFDSIMLC 191
              WI R+    GV +LD   IT +     +P  IF +N++  LRL     ++   +++ L 
Sbjct:   100 SWIHRVLSRGGVTDLDLF-ITFKGKFQLVPLLIFKSNTLVKLRLGRGFTIKLCHENVYLP 158

Query:   192 SLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKAS 238
              LK L L+ V  D    + + L   CPLLE+L   +  W  K  C S +S
Sbjct:   159 MLKTLCLDTVDFDGDHNVFETLLPRCPLLEELVLEDQRW--KQWCGSVSS 206

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2016630 AT1G58310 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 69/216 (31%), Positives = 107/216 (49%)

Query:    18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFF------PGA 71
             D IS LP  ++ H++S+L+ KE A TSVL+KKW  L+ S P LDFD +         P  
Sbjct:     8 DIISGLPDSLLCHILSFLNTKEAASTSVLAKKWRYLFASVPNLDFDDSVHLRLGKRNPAV 67

Query:    72 SRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPI 131
             S  DY    ++  N    +    FMDFVD  ++R  +    + KF L +   D      I
Sbjct:    68 SGEDY----LKMINERSDQLSTSFMDFVD-QVLRL-QDNSPLHKFSLKIR--DCVDIVRI 119

Query:   132 VDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ-PF---DS 187
             +  WI   +E GV +L+ +      +  +LP  IF + ++  L+L    +E+ PF   + 
Sbjct:   120 IC-WILKVLERGVSDLELDMHLKWKS--SLPSKIFLSETLVRLKL---SVERGPFIDVED 173

Query:   188 IMLCSLKKLTLERVCLDEQMV--QKLASECPLLEDL 221
             + L  LK L +  V  ++  +   KL S C +LE+L
Sbjct:   174 VHLPKLKTLHIVSVKFEKHGIGLNKLLSGCHILEEL 209

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.82
KOG4341	483	consensus F-box protein containing LRR [General fu	99.68
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.16
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.97
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.94
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.92
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.91
KOG4341	483	consensus F-box protein containing LRR [General fu	98.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.73
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.68
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.58
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.57
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.45
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.38
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.28
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.11
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.11
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.08
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.08
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.92
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.49
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.26
PRK15386	426	type III secretion protein GogB; Provisional	97.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.14
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.13
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.1
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.08
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.92
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.9
PRK15386	426	type III secretion protein GogB; Provisional	96.7
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.54
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.51
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.16
PLN03150	623	hypothetical protein; Provisional	96.13
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.89
PLN03150	623	hypothetical protein; Provisional	95.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.79
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	95.76
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.64
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.55
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.05
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	94.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.72
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.02
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.25
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.41
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	91.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.78
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	90.05
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.36
PF13013	109	F-box-like_2: F-box-like domain	87.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.55
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	86.31
KOG4237	498	consensus Extracellular matrix protein slit, conta	85.69
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	83.74
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	83.32
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	80.07

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.4e-21  Score=164.51  Aligned_cols=260  Identities=23%  Similarity=0.264  Sum_probs=178.7

Q ss_pred             cccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhccCce---EEeeCCCcCCCCCCCCCCccccccccchhhhhhHhH
Q 019031           19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPI---LDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKF   95 (347)
Q Consensus        19 ~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   95 (347)
                      -+..|||||++.||+.|+.+++++++.|||||.++.+.-..   +++..+.+.+                          
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p--------------------------  150 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP--------------------------  150 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh--------------------------
Confidence            37789999999999999999999999999999987544332   1222222211                          


Q ss_pred             HHHHHHHHHhhhccCcccceEEEEEecCCCCCChhHHHHHHHHH--HHcCceEEEeeeecCCcccccccccccccccccE
Q 019031           96 MDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDENTVYTLPQAIFSANSVTN  173 (347)
Q Consensus        96 ~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~--~~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~  173 (347)
                       +...+.+      ...+..|+  +... +...    ++...++  ...++++++  +.......-.+...+..|..|+.
T Consensus       151 -~~l~~l~------~rgV~v~R--lar~-~~~~----prlae~~~~frsRlq~lD--LS~s~it~stl~~iLs~C~kLk~  214 (419)
T KOG2120|consen  151 -DVLGRLL------SRGVIVFR--LARS-FMDQ----PRLAEHFSPFRSRLQHLD--LSNSVITVSTLHGILSQCSKLKN  214 (419)
T ss_pred             -hHHHHHH------hCCeEEEE--cchh-hhcC----chhhhhhhhhhhhhHHhh--cchhheeHHHHHHHHHHHHhhhh
Confidence             2222223      12333343  3311 1111    1223332  335799999  65544555566656667999999


Q ss_pred             EEEeeeeccCCC--CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCCCcc---cccc-CCCceEEEcc
Q 019031          174 LRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSK-ASKLKIMEIR  246 (347)
Q Consensus       174 L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~-~~~L~~L~l~  246 (347)
                      |+|.|..++++.  ....=.+|+.|+|+.+.. +..+++-++++|..|.+|+|+.|......   .+.+ -++|+.|+++
T Consensus       215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls  294 (419)
T KOG2120|consen  215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS  294 (419)
T ss_pred             ccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence            999999987654  345567999999999988 99999999999999999999999764421   1111 2799999999


Q ss_pred             ccc-----cchhhhhhcCCCccEEEeeeeCCCCC-ceeeccCCCCCcEEEeecc-ccCchHHHHHHccCCCCCEEeecCc
Q 019031          247 SFS-----EEIEIVEISVPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSV-YFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       247 ~~~-----~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ||.     +.+..+...+|+|.+|+++++....+ ....+-+++.|++|.++-+ .+....+. .+...|.|.+|++.+|
T Consensus       295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHee-eeccCcceEEEEeccc
Confidence            987     45555666899999999996554333 2334567899999999544 34433333 3466899999999998


Q ss_pred             CC
Q 019031          320 CL  321 (347)
Q Consensus       320 ~~  321 (347)
                      -.
T Consensus       374 vs  375 (419)
T KOG2120|consen  374 VS  375 (419)
T ss_pred             cC
Confidence            43

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.68  E-value=4.1e-19  Score=156.02  Aligned_cols=179  Identities=20%  Similarity=0.194  Sum_probs=109.2

Q ss_pred             cccccc-CCchHHHHHHhcCCChhhhhhhcccchhhHhhhccCce-EEeeCCCcCCCCCCCCCCccccccccchhhhhhH
Q 019031           16 AMDRIS-ELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPI-LDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVK   93 (347)
Q Consensus        16 ~~d~is-~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (347)
                      +.+.++ .||.|++..|||+|+.+.+++++++|+-|+.+.-.... -.++.-+|....+                     
T Consensus        67 ~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~---------------------  125 (483)
T KOG4341|consen   67 DNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD---------------------  125 (483)
T ss_pred             hcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC---------------------
Confidence            445565 69999999999999999999999999999976322111 0111111111100                     


Q ss_pred             hHHHHHHHHHHhhhccCcccceEEEEEecCCCCCChhHHHHHHHHHHH--cCceEEEeeeecCCcccc-ccccccccccc
Q 019031           94 KFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVY-TLPQAIFSANS  170 (347)
Q Consensus        94 ~f~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~~~--~~l~~L~~~l~~~~~~~~-~l~~~~~~~~~  170 (347)
                        -..|..++   ...++.++.++++-.       ...-++-+..+..  +++++|.  +..+..-.. .+......|+.
T Consensus       126 --g~VV~~~~---~Rcgg~lk~LSlrG~-------r~v~~sslrt~~~~CpnIehL~--l~gc~~iTd~s~~sla~~C~~  191 (483)
T KOG4341|consen  126 --GGVVENMI---SRCGGFLKELSLRGC-------RAVGDSSLRTFASNCPNIEHLA--LYGCKKITDSSLLSLARYCRK  191 (483)
T ss_pred             --CcceehHh---hhhcccccccccccc-------ccCCcchhhHHhhhCCchhhhh--hhcceeccHHHHHHHHHhcch
Confidence              01222222   122467777776633       1122233333332  7888887  665543222 22222234788


Q ss_pred             ccEEEEeeeeccCC-C---CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCC
Q 019031          171 VTNLRLVWCRLEQP-F---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL  229 (347)
Q Consensus       171 L~~L~L~~~~l~~~-~---~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~  229 (347)
                      |++|.|..|..... .   ...+||+|++|+++++.- ++.+++.+..+|..++++.+++|...
T Consensus       192 l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~  255 (483)
T KOG4341|consen  192 LRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL  255 (483)
T ss_pred             hhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence            88888888652211 1   456788888888888876 66778888888888888888877653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.16  E-value=1.4e-10  Score=120.04  Aligned_cols=179  Identities=19%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             cccccc-ccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccc--
Q 019031          161 LPQAIF-SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVS--  235 (347)
Q Consensus       161 l~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~--  235 (347)
                      +|..++ .+++|++|+|++|.+........+++|++|+|+++.+... +...+.++++|+.|++.+|.....  -.+.  
T Consensus       109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  187 (968)
T PLN00113        109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL  187 (968)
T ss_pred             CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence            444443 4555666666555543322233455555555555544211 111234455555555554432111  1122  


Q ss_pred             ----------------------cCCCceEEEccccc--cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEe
Q 019031          236 ----------------------KASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  291 (347)
Q Consensus       236 ----------------------~~~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L  291 (347)
                                            .+++|+.|.+.++.  ..+......+++|++|+++.+......+..++.+++|+.|++
T Consensus       188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL  267 (968)
T ss_pred             cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence                                  34455555555443  011111124455555555533332223333455556666666


Q ss_pred             eccccCchHHHHHHccCCCCCEEeecCcCCchhh---hccCcccceEeccccc
Q 019031          292 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCK  341 (347)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~  341 (347)
                      .++.+.+. +...+..+++|+.|++++|.....+   ....++|+.|++.++.
T Consensus       268 ~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        268 YQNKLSGP-IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             cCCeeecc-CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCc
Confidence            55544432 1222344566666666665322221   2345567777766554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.09  E-value=3.6e-10  Score=116.99  Aligned_cols=104  Identities=19%  Similarity=0.129  Sum_probs=50.8

Q ss_pred             CCCceEEEccccc--cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEE
Q 019031          237 ASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  314 (347)
Q Consensus       237 ~~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L  314 (347)
                      +++|+.|.+.++.  .........+++|++|+++.+......+..+..+++|+.|++.++.+... ....+..+++|+.|
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L  337 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK-IPVALTSLPRLQVL  337 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc-CChhHhcCCCCCEE
Confidence            4455555555443  01111112345555555553333222222344566666666665555432 22334556777777


Q ss_pred             eecCcCCchhh---hccCcccceEeccccc
Q 019031          315 FVTRCCLPGKI---KISSNQLKNLLFRSCK  341 (347)
Q Consensus       315 ~l~~c~~~~~~---~~~~~~L~~L~l~~c~  341 (347)
                      ++.+|.....+   ....++|+.|+++++.
T Consensus       338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             ECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence            77666432222   2244667777776554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1.1e-10  Score=104.08  Aligned_cols=172  Identities=20%  Similarity=0.198  Sum_probs=123.2

Q ss_pred             cccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCC---CccccccCCCc
Q 019031          168 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---KHLCVSKASKL  240 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~---~~~~~~~~~~L  240 (347)
                      .+.|+.+.|.++.+..++   ....||+++.|+|+++-+ ....+..++.-.|+||.|+++.+...   .......+++|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            467888899888876655   567899999999999988 77888899999999999999876532   11112246789


Q ss_pred             eEEEccccc---cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeec
Q 019031          241 KIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT  317 (347)
Q Consensus       241 ~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~  317 (347)
                      |.|.+.+|.   ..+..+...+|+|+.|.+..+............+..|+.|+|+++.+.+.........+|.|+.|.++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            999999997   45566667899999999985421111122234567888888888887775555566778888888888


Q ss_pred             CcCCch---------hhhccCcccceEeccc
Q 019031          318 RCCLPG---------KIKISSNQLKNLLFRS  339 (347)
Q Consensus       318 ~c~~~~---------~~~~~~~~L~~L~l~~  339 (347)
                      .|..-+         .....+|+|+.|.+..
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISE  310 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeeccc
Confidence            772211         1234667888887654

>PLN03210 Resistant to P

Probab=98.97  E-value=3.6e-09  Score=110.76  Aligned_cols=155  Identities=20%  Similarity=0.196  Sum_probs=79.2

Q ss_pred             CCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccc-cCCCceEEEccccccchhhhhhcCCCccEEE
Q 019031          188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-KASKLKIMEIRSFSEEIEIVEISVPSLQQLT  266 (347)
Q Consensus       188 ~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~  266 (347)
                      ..+++|++|+|.+|..- ..+..-+..+++|+.|++.+|..+..+... ++++|+.|.+.+|. .+..+....++|+.|.
T Consensus       654 s~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~  731 (1153)
T PLN03210        654 SMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS-RLKSFPDISTNISWLD  731 (1153)
T ss_pred             ccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC-CccccccccCCcCeee
Confidence            34455555555544321 011122344555555555555544433221 34566666666664 3333333334555555


Q ss_pred             eeeeCCCC-Ccee----------------------------eccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeec
Q 019031          267 LLFYGARR-PRVV----------------------------EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT  317 (347)
Q Consensus       267 l~~~~~~~-~~~~----------------------------~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~  317 (347)
                      +..+.... +..+                            ....+++|+.|++.++..... ++..+.++++|+.|++.
T Consensus       732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls  810 (1153)
T PLN03210        732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIE  810 (1153)
T ss_pred             cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECC
Confidence            54322110 0000                            001134666666655432221 33445678889999999


Q ss_pred             CcCCchhhhc--cCcccceEecccccCccc
Q 019031          318 RCCLPGKIKI--SSNQLKNLLFRSCKYLKL  345 (347)
Q Consensus       318 ~c~~~~~~~~--~~~~L~~L~l~~c~~l~~  345 (347)
                      +|..++.+..  ..++|+.|++++|.+++.
T Consensus       811 ~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        811 NCINLETLPTGINLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             CCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence            8876665532  467888888888877653

syringae 6; Provisional

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.96  E-value=5.4e-10  Score=70.15  Aligned_cols=36  Identities=31%  Similarity=0.683  Sum_probs=31.4

Q ss_pred             ccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhc
Q 019031           20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV   55 (347)
Q Consensus        20 is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~   55 (347)
                      |+.||+||+.+||++|+.+|+++++.|||+|+.+..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999998653

>PLN03210 Resistant to P

Probab=98.94  E-value=5.3e-09  Score=109.48  Aligned_cols=124  Identities=24%  Similarity=0.315  Sum_probs=76.3

Q ss_pred             CCccEEEeeccCCCCcc--ccccCCCceEEEccccccchhhhh--hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEe
Q 019031          216 PLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  291 (347)
Q Consensus       216 p~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L  291 (347)
                      ++|+.|++.+|.....+  .+.++++|+.|++.+|. .+..+.  ...++|++|.+++|......   ....++|+.|++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~-~L~~LP~~~~L~sL~~L~Ls~c~~L~~~---p~~~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI-NLETLPTGINLESLESLDLSGCSRLRTF---PDISTNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCC-CcCeeCCCCCccccCEEECCCCCccccc---cccccccCEeEC
Confidence            44555555554433322  13345666666666665 333322  14566666666643322111   122357888888


Q ss_pred             eccccCchHHHHHHccCCCCCEEeecCcCCchhhhc---cCcccceEecccccCccc
Q 019031          292 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFRSCKYLKL  345 (347)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~~c~~l~~  345 (347)
                      .++.+..  ++..+..+++|+.|++.+|..+..+..   ..++|+.+++.+|.+|++
T Consensus       854 s~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        854 SRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             CCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            7777754  455677899999999999988776543   456788889999998874

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.92  E-value=1.9e-09  Score=97.19  Aligned_cols=171  Identities=19%  Similarity=0.151  Sum_probs=95.0

Q ss_pred             ccccEEEEeeeeccCCC------CcCCC-CCcCEEEeeeeeeChHH---HHHHHhcCCCccEEEeeccCCCCc----c--
Q 019031          169 NSVTNLRLVWCRLEQPF------DSIML-CSLKKLTLERVCLDEQM---VQKLASECPLLEDLCFSNCWGLKH----L--  232 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~------~~~~~-~~L~~L~L~~~~~~~~~---l~~i~~~cp~Le~L~l~~c~~~~~----~--  232 (347)
                      ++|++|++++|.+....      ....+ ++|+.|+++++.++...   +...+..+++|+.|++.+|.....    +  
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            44888888877655211      12344 77788888887774332   333455667788888877653211    1  


Q ss_pred             ccccCCCceEEEccccc---cc---hhhhhhcCCCccEEEeeeeCCCCCceeec-----cCCCCCcEEEeeccccCchHH
Q 019031          233 CVSKASKLKIMEIRSFS---EE---IEIVEISVPSLQQLTLLFYGARRPRVVEV-----ARSPHLKKLDLVSVYFADNEF  301 (347)
Q Consensus       233 ~~~~~~~L~~L~l~~~~---~~---~~~~~~~~p~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~L~~~~~~~~~~  301 (347)
                      .+..+++|+.|++++|.   ..   +......+|+|++|+++++...+.....+     ...+.|++|++.++.+++...
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence            12234578888887775   11   11222356778888887544332111111     123678888887777764333


Q ss_pred             ---HHHHccCCCCCEEeecCcCCch-------hhhccC-cccceEeccc
Q 019031          302 ---NHLISKFPSLEDLFVTRCCLPG-------KIKISS-NQLKNLLFRS  339 (347)
Q Consensus       302 ---~~~~~~~~~L~~L~l~~c~~~~-------~~~~~~-~~L~~L~l~~  339 (347)
                         ...+..+++|+.++++++....       ...... +.|+.|+|.+
T Consensus       268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence               3334455677788877764332       122233 5777776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.4e-10  Score=98.70  Aligned_cols=202  Identities=23%  Similarity=0.197  Sum_probs=135.9

Q ss_pred             HHHHHHcCceEEEeeeecCCcccccccccccc-cccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHH
Q 019031          136 IRLAVENGVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKL  211 (347)
Q Consensus       136 i~~~~~~~l~~L~~~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i  211 (347)
                      ......+++..+.  +-........+...... -..|++|+|+...+....   ....|.+|+.|+|.+...++.....+
T Consensus       153 l~~l~~rgV~v~R--lar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i  230 (419)
T KOG2120|consen  153 LGRLLSRGVIVFR--LARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI  230 (419)
T ss_pred             HHHHHhCCeEEEE--cchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH
Confidence            3444556777777  43221122222222211 246999999986655433   34678999999999999988877775


Q ss_pred             HhcCCCccEEEeeccCCCCcc----ccccCCCceEEEccccccchhhhh----hcCCCccEEEeeeeCCCCC---ceeec
Q 019031          212 ASECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRP---RVVEV  280 (347)
Q Consensus       212 ~~~cp~Le~L~l~~c~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~----~~~p~L~~L~l~~~~~~~~---~~~~~  280 (347)
                      . .-..|+.|+|++|.+++.-    .+++|..|.+|+++.|...-+.+.    ---++|..|.++++..+-.   .....
T Consensus       231 A-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~  309 (419)
T KOG2120|consen  231 A-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV  309 (419)
T ss_pred             h-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence            4 4578999999999998753    346789999999999971111122    2458899999995433211   11224


Q ss_pred             cCCCCCcEEEeeccc-cCchHHHHHHccCCCCCEEeecCcCCch--hh--hccCcccceEeccccc
Q 019031          281 ARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLPG--KI--KISSNQLKNLLFRSCK  341 (347)
Q Consensus       281 ~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~~--~~~~~~L~~L~l~~c~  341 (347)
                      ..||+|.+|||+++. +++. ....+..++.|++|.++.|-.+.  .+  ....|.|.+|++.+|-
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HhCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            679999999997554 5554 44555679999999999994432  22  2367899999988763

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.84  E-value=3.2e-10  Score=100.60  Aligned_cols=200  Identities=15%  Similarity=0.121  Sum_probs=112.5

Q ss_pred             CceEEEeeeecCCc-ccccccccccccccccEEEEeeeecc-CCC---CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCC
Q 019031          143 GVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWCRLE-QPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECP  216 (347)
Q Consensus       143 ~l~~L~~~l~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~-~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp  216 (347)
                      .+++|.  +.++.. ....+......|+++++|.+.+|... ...   ....|++|+.|.|..|.. ++..++.+..+||
T Consensus       139 ~lk~LS--lrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELS--LRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             cccccc--ccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            455555  443322 22223333344666666666666521 111   334566666666666443 6666666666666


Q ss_pred             CccEEEeeccCCCCc----cccccCCCceEEEccccc-cch---hhhhhcCCCccEEEeeeeCCC-CCceee-ccCCCCC
Q 019031          217 LLEDLCFSNCWGLKH----LCVSKASKLKIMEIRSFS-EEI---EIVEISVPSLQQLTLLFYGAR-RPRVVE-VARSPHL  286 (347)
Q Consensus       217 ~Le~L~l~~c~~~~~----~~~~~~~~L~~L~l~~~~-~~~---~~~~~~~p~L~~L~l~~~~~~-~~~~~~-~~~~~~L  286 (347)
                      +|++|+++.|+.+..    ...+++..++.+...+|. .+.   ..+.-.++-+..+++..|... +...+. --.+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            666666666655443    222345556666555665 112   222223344444443322221 111111 1347788


Q ss_pred             cEEEee-ccccCchHHHHHHccCCCCCEEeecCcCCch-----hhhccCcccceEecccccCcc
Q 019031          287 KKLDLV-SVYFADNEFNHLISKFPSLEDLFVTRCCLPG-----KIKISSNQLKNLLFRSCKYLK  344 (347)
Q Consensus       287 ~~L~L~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-----~~~~~~~~L~~L~l~~c~~l~  344 (347)
                      +.|+.+ ..++++..+..+..++++|+.|.+..|..+.     .+..+++.|+.+++..|...+
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~  360 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT  360 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence            888884 3457777788888889999999999986554     345578899999988887654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.81  E-value=2.7e-09  Score=96.24  Aligned_cols=206  Identities=17%  Similarity=0.115  Sum_probs=134.7

Q ss_pred             HHHHHHHH-cCceEEEeeeecCCcc---cccccccccccccccEEEEeeeeccC--CC------CcCCCCCcCEEEeeee
Q 019031          134 RWIRLAVE-NGVRELDFENITDENT---VYTLPQAIFSANSVTNLRLVWCRLEQ--PF------DSIMLCSLKKLTLERV  201 (347)
Q Consensus       134 ~~i~~~~~-~~l~~L~~~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~l~~--~~------~~~~~~~L~~L~L~~~  201 (347)
                      .|...+.. .+++.++  +..+...   ...++..+...++|++|.++++.+..  ..      ....+++|++|+++++
T Consensus        14 ~~~~~~~~l~~L~~l~--l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~   91 (319)
T cd00116          14 RATELLPKLLCLQVLR--LEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN   91 (319)
T ss_pred             chHHHHHHHhhccEEe--ecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence            44443322 5699999  6554332   22344445556789999999887652  11      2345789999999999


Q ss_pred             eeCh---HHHHHHHhcCCCccEEEeeccCCCCc------cccccC-CCceEEEccccc-c--chhhh---hhcCCCccEE
Q 019031          202 CLDE---QMVQKLASECPLLEDLCFSNCWGLKH------LCVSKA-SKLKIMEIRSFS-E--EIEIV---EISVPSLQQL  265 (347)
Q Consensus       202 ~~~~---~~l~~i~~~cp~Le~L~l~~c~~~~~------~~~~~~-~~L~~L~l~~~~-~--~~~~~---~~~~p~L~~L  265 (347)
                      .+..   ..+..+..+ ++|++|++.+|.....      ..+..+ ++|+.|++.+|. .  ....+   ...+++|++|
T Consensus        92 ~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L  170 (319)
T cd00116          92 ALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL  170 (319)
T ss_pred             CCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEE
Confidence            8843   334444444 6799999999864311      122345 899999999997 1  11122   2356789999


Q ss_pred             EeeeeCCCCCc----eeeccCCCCCcEEEeeccccCchHH---HHHHccCCCCCEEeecCcCCch----hhhcc----Cc
Q 019031          266 TLLFYGARRPR----VVEVARSPHLKKLDLVSVYFADNEF---NHLISKFPSLEDLFVTRCCLPG----KIKIS----SN  330 (347)
Q Consensus       266 ~l~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~~---~~~~~~~~~L~~L~l~~c~~~~----~~~~~----~~  330 (347)
                      +++++......    ...+...++|++|++.++.+.+...   ...+..+++|+.|++++|....    .+...    .+
T Consensus       171 ~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~  250 (319)
T cd00116         171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNI  250 (319)
T ss_pred             ECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCC
Confidence            99866554211    1123456799999999888876543   3456678999999999985432    22222    37


Q ss_pred             ccceEecccccC
Q 019031          331 QLKNLLFRSCKY  342 (347)
Q Consensus       331 ~L~~L~l~~c~~  342 (347)
                      +|++|++.+|..
T Consensus       251 ~L~~L~l~~n~i  262 (319)
T cd00116         251 SLLTLSLSCNDI  262 (319)
T ss_pred             CceEEEccCCCC
Confidence            999999999863

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.73  E-value=1.5e-09  Score=100.23  Aligned_cols=178  Identities=21%  Similarity=0.195  Sum_probs=113.8

Q ss_pred             cccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCC--CCccccccCCCce
Q 019031          166 FSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG--LKHLCVSKASKLK  241 (347)
Q Consensus       166 ~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~--~~~~~~~~~~~L~  241 (347)
                      +.|.++++|+|..+++....  ...++..|+.|+|+++.+..-.... -+.|++|++|+|+++..  +..-++..+.+|+
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQKLKELDLSSNRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hhhcccceeEeccccccccCChhHHHHHHHhh
Confidence            44667777777777654332  4556777777888777652222222 34588888888887753  2233344567888


Q ss_pred             EEEccccc-cchhhhh-hcCCCccEEEeeeeCC---CCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEee
Q 019031          242 IMEIRSFS-EEIEIVE-ISVPSLQQLTLLFYGA---RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV  316 (347)
Q Consensus       242 ~L~l~~~~-~~~~~~~-~~~p~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l  316 (347)
                      .|.++.+. +.+.... ..+.+|+.|+++.+..   .+.....+..++.|+.|.+.++++..- -...+.++++||+|++
T Consensus       345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~krAfsgl~~LE~LdL  423 (873)
T KOG4194|consen  345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PKRAFSGLEALEHLDL  423 (873)
T ss_pred             hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-chhhhccCcccceecC
Confidence            89888875 3333333 3678899999873222   122233456799999999999987643 3456788999999999


Q ss_pred             cCcCCch---hhhccCcccceEecccccCcccc
Q 019031          317 TRCCLPG---KIKISSNQLKNLLFRSCKYLKLC  346 (347)
Q Consensus       317 ~~c~~~~---~~~~~~~~L~~L~l~~c~~l~~~  346 (347)
                      .+.....   ...... .|++|.+.....|=+|
T Consensus       424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             CCCcceeecccccccc-hhhhhhhcccceEEec
Confidence            9864322   112222 6777777666655554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.70  E-value=2.1e-08  Score=87.37  Aligned_cols=153  Identities=25%  Similarity=0.334  Sum_probs=103.0

Q ss_pred             CCCCCcCEEEeeeeee---ChHHHHHHHhcCCCccEEEeeccCCCC-----------cc----ccccCCCceEEEccccc
Q 019031          188 IMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLK-----------HL----CVSKASKLKIMEIRSFS  249 (347)
Q Consensus       188 ~~~~~L~~L~L~~~~~---~~~~l~~i~~~cp~Le~L~l~~c~~~~-----------~~----~~~~~~~L~~L~l~~~~  249 (347)
                      .++|.|++|+|+.+.+   +...+..++++|..|++|.+.+|..-.           .+    .+..-++|+.+....+.
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            4566777777777766   456788888999999999999995411           01    12234799999888776


Q ss_pred             ------cchhhhhhcCCCccEEEeeeeCCCCCce----eeccCCCCCcEEEeeccccCch---HHHHHHccCCCCCEEee
Q 019031          250 ------EEIEIVEISVPSLQQLTLLFYGARRPRV----VEVARSPHLKKLDLVSVYFADN---EFNHLISKFPSLEDLFV  316 (347)
Q Consensus       250 ------~~~~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~~L~l  316 (347)
                            ..+.......|.|+.+.+..++....-.    ..+..||+|+.|||..+.++..   .+...++.+|+|+.|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence                  1222223356899999998666543321    2357799999999988887753   34455677888999999


Q ss_pred             cCcCCc--------hhhhccCcccceEecccc
Q 019031          317 TRCCLP--------GKIKISSNQLKNLLFRSC  340 (347)
Q Consensus       317 ~~c~~~--------~~~~~~~~~L~~L~l~~c  340 (347)
                      ++|-.-        ..+....|+|+.|.+.++
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcc
Confidence            998211        122335677777776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=4.2e-09  Score=94.14  Aligned_cols=153  Identities=21%  Similarity=0.176  Sum_probs=107.8

Q ss_pred             ccccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc--cccCCCce
Q 019031          167 SANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLK  241 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~--~~~~~~L~  241 (347)
                      ..++|+.|+|+.+.+..+.   ....++.|++|.|++|.++..++..++..||.|+.|.+.++..+....  ..-+..|+
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            4688889999888765443   334688999999999999989999999999999999998885432211  11245899


Q ss_pred             EEEccccc-c--chhhhhhcCCCccEEEeeeeCCCCCceee------ccCCCCCcEEEeeccccCchHHHHHHccCCCCC
Q 019031          242 IMEIRSFS-E--EIEIVEISVPSLQQLTLLFYGARRPRVVE------VARSPHLKKLDLVSVYFADNEFNHLISKFPSLE  312 (347)
Q Consensus       242 ~L~l~~~~-~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~------~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~  312 (347)
                      .|++++++ -  ........+|.|..|.++.++........      ...+|+|+.|++..+.+.+.....-+..+++|+
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK  329 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence            99999886 1  11122236788888888866653322111      256789999999888887655555556678888


Q ss_pred             EEeecCc
Q 019031          313 DLFVTRC  319 (347)
Q Consensus       313 ~L~l~~c  319 (347)
                      .|.+...
T Consensus       330 ~l~~~~n  336 (505)
T KOG3207|consen  330 HLRITLN  336 (505)
T ss_pred             hhhcccc
Confidence            8886643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.58  E-value=1.3e-08  Score=94.18  Aligned_cols=151  Identities=22%  Similarity=0.243  Sum_probs=87.6

Q ss_pred             cCceEEEeeeecCCcccccccccccc-cccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L  218 (347)
                      +.++.|+  +......  +++..-+. ..++++|+|+++++....  .+.++.+|.+|.|++++++.-.. ..+...|+|
T Consensus       149 ~alrslD--LSrN~is--~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L  223 (873)
T KOG4194|consen  149 PALRSLD--LSRNLIS--EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKL  223 (873)
T ss_pred             hhhhhhh--hhhchhh--cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH-HHhhhcchh
Confidence            4677777  4332222  22222222 367999999998866432  55677788999999988842222 336678889


Q ss_pred             cEEEeeccCC--CCccccccCCCceEEEccccc-c---------------------chhhhh----hcCCCccEEEeeee
Q 019031          219 EDLCFSNCWG--LKHLCVSKASKLKIMEIRSFS-E---------------------EIEIVE----ISVPSLQQLTLLFY  270 (347)
Q Consensus       219 e~L~l~~c~~--~~~~~~~~~~~L~~L~l~~~~-~---------------------~~~~~~----~~~p~L~~L~l~~~  270 (347)
                      +.|+|..+..  ...+.+.++++|+.|.+..+. .                     .+..+.    ..+..|+.|+++++
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence            9888877643  223334444444444444332 0                     122221    24556666666643


Q ss_pred             CCCCCceeeccCCCCCcEEEeeccccC
Q 019031          271 GARRPRVVEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       271 ~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (347)
                      .......-.++.+++|+.|+|+++.++
T Consensus       304 aI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  304 AIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhheeecchhhhcccceeEeccccccc
Confidence            332223334677888888888877665

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.57  E-value=3e-08  Score=62.51  Aligned_cols=39  Identities=38%  Similarity=0.686  Sum_probs=32.4

Q ss_pred             cccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhccC
Q 019031           19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSF   57 (347)
Q Consensus        19 ~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~~   57 (347)
                      .+++||+|++.+||++|+.+|+++++.|||+|+.+....
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            367899999999999999999999999999999876553

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.45  E-value=1.2e-07  Score=90.42  Aligned_cols=168  Identities=21%  Similarity=0.275  Sum_probs=105.8

Q ss_pred             cCceEEEeeeecCCcc-cccccccccccccccEEEEeee-ecc---C---CCCcCCCCCcCEEEeeeee-eChHHHHHHH
Q 019031          142 NGVRELDFENITDENT-VYTLPQAIFSANSVTNLRLVWC-RLE---Q---PFDSIMLCSLKKLTLERVC-LDEQMVQKLA  212 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~~-~l~---~---~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~  212 (347)
                      +.++.+.  +..+... ...+......|+.|+.|++++| ...   .   ......+++|+.|++.++. +++..+..+.
T Consensus       188 ~~L~~l~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  188 PLLKRLS--LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             chhhHhh--hcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            5566666  4332211 1113344556888999998873 211   1   1144567889999998888 5888888888


Q ss_pred             hcCCCccEEEeeccCCCCcccc----ccCCCceEEEccccc----cchhhhhhcCCCccEEEeeeeCC------------
Q 019031          213 SECPLLEDLCFSNCWGLKHLCV----SKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA------------  272 (347)
Q Consensus       213 ~~cp~Le~L~l~~c~~~~~~~~----~~~~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~------------  272 (347)
                      ..||.|+.|.+.+|..++...+    ..+++|++|++.+|.    ..+..+...+|+|+.|.+.....            
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~  345 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL  345 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence            8899999999888876543222    347889999999887    23444445678777776542210            


Q ss_pred             -----CCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCC
Q 019031          273 -----RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (347)
Q Consensus       273 -----~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L  311 (347)
                           ..........+++|+.+.+..+...+......+.+||+|
T Consensus       346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence                 012223346778888888866555554445566667666

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.38  E-value=2.1e-07  Score=56.39  Aligned_cols=34  Identities=32%  Similarity=0.593  Sum_probs=31.7

Q ss_pred             CchHHHHHHhcCCChhhhhhhcccchhhHhhhcc
Q 019031           23 LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS   56 (347)
Q Consensus        23 LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~   56 (347)
                      ||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987644

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.32  E-value=6.5e-07  Score=72.66  Aligned_cols=105  Identities=23%  Similarity=0.176  Sum_probs=38.1

Q ss_pred             CCCccEEEeeccCCCCccccccCCCceEEEccccc-cchh-hhhhcCCCccEEEeeeeCCCCCc-eeeccCCCCCcEEEe
Q 019031          215 CPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDL  291 (347)
Q Consensus       215 cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~L  291 (347)
                      +.+|+.|++++|....--.+..+++|+.|.++++. ..+. .+...+|+|++|.++.+...+.. ...+..+|+|+.|++
T Consensus        41 l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L  120 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL  120 (175)
T ss_dssp             -TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred             hcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence            34444444444432111122234555555555543 1111 11124566666666533332211 123467888888888


Q ss_pred             eccccCch--HHHHHHccCCCCCEEeecCc
Q 019031          292 VSVYFADN--EFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       292 ~~~~~~~~--~~~~~~~~~~~L~~L~l~~c  319 (347)
                      .++.+...  --..++..+|+|+.|+-...
T Consensus       121 ~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  121 EGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             cCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            87766531  12345677899999988765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.28  E-value=7.3e-07  Score=87.60  Aligned_cols=151  Identities=18%  Similarity=0.252  Sum_probs=106.7

Q ss_pred             ccccEEEEeeee-ccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031          169 NSVTNLRLVWCR-LEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (347)
Q Consensus       169 ~~L~~L~L~~~~-l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~  244 (347)
                      .+|++|+++|.. +...+   .+.-||+|++|.+.+..+...++..+..++|+|..|+++++..-.-.-++.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            578888888754 22222   45679999999999999966779999999999999999988532223356678888888


Q ss_pred             ccccc-cchh--hhhhcCCCccEEEeeeeCCCCCcee------eccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEe
Q 019031          245 IRSFS-EEIE--IVEISVPSLQQLTLLFYGARRPRVV------EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF  315 (347)
Q Consensus       245 l~~~~-~~~~--~~~~~~p~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~  315 (347)
                      +.+-. ....  .-...+.+|+.|+++.........+      ....+|+|+.||.++..+....+..+...-|+|+...
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            77654 1111  1123788999999984333222111      1245899999999999998888888888778887776


Q ss_pred             ecCc
Q 019031          316 VTRC  319 (347)
Q Consensus       316 l~~c  319 (347)
                      .-.|
T Consensus       282 ~~~~  285 (699)
T KOG3665|consen  282 ALDC  285 (699)
T ss_pred             hhhh
Confidence            5544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.23  E-value=1.9e-07  Score=90.94  Aligned_cols=126  Identities=17%  Similarity=0.142  Sum_probs=72.2

Q ss_pred             cCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccC--CCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeee
Q 019031          193 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW--GLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLF  269 (347)
Q Consensus       193 L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~--~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~  269 (347)
                      |..|.+.++.+++..+.. +.+.++|+.|++.++.  .+....+..++.|+.|.++|+. ..+......++.|+.|....
T Consensus       361 Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC
Confidence            444444444444444443 3455666666666652  2233334445666666666664 22232223556666666652


Q ss_pred             eCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCc
Q 019031          270 YGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP  322 (347)
Q Consensus       270 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  322 (347)
                      +.. ..++ .+.+++.|+.+|+++++++...+.+.... |+|++|++++...+
T Consensus       440 N~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  440 NQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL  489 (1081)
T ss_pred             Cce-eech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence            222 2222 45778899999999888877655554433 89999999987543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.18  E-value=5.5e-07  Score=73.07  Aligned_cols=124  Identities=18%  Similarity=0.082  Sum_probs=46.7

Q ss_pred             hcCCCccEEEeeccCCCCccccc-cCCCceEEEccccccchhhhh--hcCCCccEEEeeeeCCCCCceeeccCCCCCcEE
Q 019031          213 SECPLLEDLCFSNCWGLKHLCVS-KASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKL  289 (347)
Q Consensus       213 ~~cp~Le~L~l~~c~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  289 (347)
                      .++-.+++|+|.++....--.+. .+.+|+.|+++++.  +..+.  ..+++|+.|.++.+............+|+|++|
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~--I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ--ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS----S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCCC--CccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            45667889999887542211232 36799999999985  44443  267999999998544432211112468999999


Q ss_pred             EeeccccCchHHHHHHccCCCCCEEeecCcCCch------hhhccCcccceEecc
Q 019031          290 DLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG------KIKISSNQLKNLLFR  338 (347)
Q Consensus       290 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~~~~~~~~L~~L~l~  338 (347)
                      .+.++.+.+..-...+..+|+|+.|++.+++...      .+....|+|+.|+-.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            9999888763333455679999999999875432      234578899998743

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.11  E-value=4.7e-06  Score=72.95  Aligned_cols=158  Identities=18%  Similarity=0.186  Sum_probs=88.5

Q ss_pred             cccccccccEEEEeeeeccCCC---------------CcCCCCCcCEEEeeeeee---ChHHHHHHHhcCCCccEEEeec
Q 019031          164 AIFSANSVTNLRLVWCRLEQPF---------------DSIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSN  225 (347)
Q Consensus       164 ~~~~~~~L~~L~L~~~~l~~~~---------------~~~~~~~L~~L~L~~~~~---~~~~l~~i~~~cp~Le~L~l~~  225 (347)
                      .+.+|.+|++|.|.+|.+.+..               -...=|.|+++...++++   +...+...+..+|.|+++.+..
T Consensus       115 ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q  194 (382)
T KOG1909|consen  115 LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ  194 (382)
T ss_pred             HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEec
Confidence            3445677777777777654332               112235677777777777   2333445566677777777776


Q ss_pred             cCCCC-c-----cccccCCCceEEEccccc------cchhhhhhcCCCccEEEeeeeCCCCCceee-----ccCCCCCcE
Q 019031          226 CWGLK-H-----LCVSKASKLKIMEIRSFS------EEIEIVEISVPSLQQLTLLFYGARRPRVVE-----VARSPHLKK  288 (347)
Q Consensus       226 c~~~~-~-----~~~~~~~~L~~L~l~~~~------~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~  288 (347)
                      +.... .     ..+.+||+|+.|++.++.      ..+.......|+|+.+.+++|.....-...     -...|+|+.
T Consensus       195 N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~v  274 (382)
T KOG1909|consen  195 NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEV  274 (382)
T ss_pred             ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCce
Confidence            54321 1     122356777777777765      122222234566777777755443221111     133677777


Q ss_pred             EEeeccccCchHHHHH---HccCCCCCEEeecCcCC
Q 019031          289 LDLVSVYFADNEFNHL---ISKFPSLEDLFVTRCCL  321 (347)
Q Consensus       289 L~L~~~~~~~~~~~~~---~~~~~~L~~L~l~~c~~  321 (347)
                      |.+.++.++-.+...+   ...-|.|+.|.+++|..
T Consensus       275 l~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  275 LELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             eccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            7777776654332222   23357777777777643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.11  E-value=2.6e-08  Score=93.03  Aligned_cols=186  Identities=17%  Similarity=0.070  Sum_probs=101.0

Q ss_pred             CcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc-
Q 019031          155 ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-  231 (347)
Q Consensus       155 ~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~-  231 (347)
                      ......+|+.+.+..+|+.|+|+++.+....  ....+.+|.+|++++..-+...+..-+.+..+|.+++++.+..... 
T Consensus       159 ~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP  238 (1255)
T KOG0444|consen  159 NNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP  238 (1255)
T ss_pred             cchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence            4455667777777777888888877655432  2223445555566665544444444445566677777765432111 


Q ss_pred             cccccCCCceEEEccccccchhhhh---hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH--------
Q 019031          232 LCVSKASKLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE--------  300 (347)
Q Consensus       232 ~~~~~~~~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--------  300 (347)
                      -.+-.+++|++|+++++.  +..+.   -.-.+|++|.++.+.. ...+-.+-.+++|+.|.+.++.++-++        
T Consensus       239 ecly~l~~LrrLNLS~N~--iteL~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNK--ITELNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             HHHhhhhhhheeccCcCc--eeeeeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence            112235788888888875  22222   1235677777763322 112222234455555544433332222        


Q ss_pred             ---------------HHHHHccCCCCCEEeecCcCCc--hhhhccCcccceEecccccCc
Q 019031          301 ---------------FNHLISKFPSLEDLFVTRCCLP--GKIKISSNQLKNLLFRSCKYL  343 (347)
Q Consensus       301 ---------------~~~~~~~~~~L~~L~l~~c~~~--~~~~~~~~~L~~L~l~~c~~l  343 (347)
                                     .++-+..|+.|+.|.++....+  .......+.|+.|+++..++|
T Consensus       316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence                           2334455667777777654332  234456678888888887775

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.08  E-value=1.2e-07  Score=88.73  Aligned_cols=174  Identities=18%  Similarity=0.088  Sum_probs=122.4

Q ss_pred             CceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          143 GVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       143 ~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++.|.  +.....+...+|..+-..++|..++++.+.++..+ ....+++|++|+|+++.++.-.+.  .....+||.|
T Consensus       198 sL~vLh--ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtL  273 (1255)
T KOG0444|consen  198 SLSVLH--MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT--EGEWENLETL  273 (1255)
T ss_pred             hhhhhh--cccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc--HHHHhhhhhh
Confidence            455555  55556667778888888889999999988876544 567889999999999988433322  3456778999


Q ss_pred             EeeccCCCCcc--ccccCCCceEEEccccc---cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031          222 CFSNCWGLKHL--CVSKASKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (347)
Q Consensus       222 ~l~~c~~~~~~--~~~~~~~L~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (347)
                      +++.+.. ..+  .+..+++|++|...++.   .++..-.-.+.+|+.|.... +..+-++-.+..|++|+.|.|..+.+
T Consensus       274 NlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  274 NLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             ccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccce
Confidence            9987753 322  23456889988888765   23333333556777777763 33334455667899999999988776


Q ss_pred             CchHHHHHHccCCCCCEEeecCcCCchh
Q 019031          297 ADNEFNHLISKFPSLEDLFVTRCCLPGK  324 (347)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~  324 (347)
                      ..  +++.+.-+|.|+.|++...+++..
T Consensus       352 iT--LPeaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  352 IT--LPEAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             ee--chhhhhhcCCcceeeccCCcCccC
Confidence            44  567777789999999999876653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=3.6e-06  Score=72.26  Aligned_cols=181  Identities=17%  Similarity=0.139  Sum_probs=129.5

Q ss_pred             cCceEEEeeeecCCccccc-ccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031          142 NGVRELDFENITDENTVYT-LPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L  218 (347)
                      ..+++++  +.......+. +...+-+.|.|+.|+|+.+.+..+-  .+....+|++|.|.+...+.......+...|.+
T Consensus        71 ~~v~elD--L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELD--LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhh--cccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            5788888  5443333332 2223334799999999999887654  224556999999999999888889999999999


Q ss_pred             cEEEeeccCC----CCccccc-cCCCceEEEccccc----cchhhhhhcCCCccEEEeeeeCC-CCCceeeccCCCCCcE
Q 019031          219 EDLCFSNCWG----LKHLCVS-KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKK  288 (347)
Q Consensus       219 e~L~l~~c~~----~~~~~~~-~~~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~  288 (347)
                      ++|+++.+.-    +..-.+. --+.++.|....|.    .+...+.-..||+.++.+..+.. ..........+|.+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            9999987632    1111111 12688899999987    34455556789999999975433 2223334566788889


Q ss_pred             EEeeccccCchHHHHHHccCCCCCEEeecCcCCchh
Q 019031          289 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK  324 (347)
Q Consensus       289 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~  324 (347)
                      |+|..+++.+.+-..-+.++|.|..|.+...+..+.
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            999888888777777788999999999998765554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.92  E-value=3.3e-06  Score=80.56  Aligned_cols=152  Identities=24%  Similarity=0.331  Sum_probs=97.3

Q ss_pred             cccccEEEEeeeeccCCC-----CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeecc-CCCCc------ccc
Q 019031          168 ANSVTNLRLVWCRLEQPF-----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNC-WGLKH------LCV  234 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~-----~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c-~~~~~------~~~  234 (347)
                      +..++.+++..+......     ....+|+|+.|.+.++.. .+..+..+...||+|++|++.+| .....      ...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  239 (482)
T KOG1947|consen  160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL  239 (482)
T ss_pred             HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh
Confidence            344555555554322111     234478888888888866 66667788888999999998873 22211      112


Q ss_pred             ccCCCceEEEccccc----cchhhhhhcCCCccEEEeeeeCC-C-CCceeeccCCCCCcEEEeeccc-cCchHHHHHHcc
Q 019031          235 SKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA-R-RPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISK  307 (347)
Q Consensus       235 ~~~~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~-~-~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~  307 (347)
                      ..+++|+.|++..|.    ..+..+...+|+|+.|.+..|.. . .........+++|++|+++++. +++..+..+..+
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~  319 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN  319 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence            346788888888776    34444455688888888664442 2 2223334678889999996544 456767777777


Q ss_pred             CCCCCEEeecCc
Q 019031          308 FPSLEDLFVTRC  319 (347)
Q Consensus       308 ~~~L~~L~l~~c  319 (347)
                      +|+|+.|.+..+
T Consensus       320 c~~l~~l~~~~~  331 (482)
T KOG1947|consen  320 CPNLRELKLLSL  331 (482)
T ss_pred             Ccchhhhhhhhc
Confidence            888777666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.90  E-value=3e-05  Score=77.15  Aligned_cols=31  Identities=13%  Similarity=0.106  Sum_probs=13.6

Q ss_pred             CccEEEeeccCCCCccccccCCCceEEEcccc
Q 019031          217 LLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (347)
Q Consensus       217 ~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~  248 (347)
                      +|+.|+++++. +..+.-.-.++|+.|++++|
T Consensus       263 ~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N  293 (754)
T PRK15370        263 ALQSLDLFHNK-ISCLPENLPEELRYLSVYDN  293 (754)
T ss_pred             CCCEEECcCCc-cCccccccCCCCcEEECCCC
Confidence            45555555332 22221111235666666655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.79  E-value=9.4e-05  Score=73.55  Aligned_cols=11  Identities=9%  Similarity=0.166  Sum_probs=6.6

Q ss_pred             CCceEEEcccc
Q 019031          238 SKLKIMEIRSF  248 (347)
Q Consensus       238 ~~L~~L~l~~~  248 (347)
                      ++|+.|+++++
T Consensus       302 ~~L~~LdLS~N  312 (788)
T PRK15387        302 PGLQELSVSDN  312 (788)
T ss_pred             cccceeECCCC
Confidence            45666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.62  E-value=0.00011  Score=73.22  Aligned_cols=180  Identities=17%  Similarity=0.105  Sum_probs=104.7

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .+...|+  +...  ....+|..+  .++|+.|+|++|.+...+ ...+++|++|+++++.+..  +...+  .+.|+.|
T Consensus       178 ~~~~~L~--L~~~--~LtsLP~~I--p~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L  246 (754)
T PRK15370        178 NNKTELR--LKIL--GLTTIPACI--PEQITTLILDNNELKSLP-ENLQGNIKTLYANSNQLTS--IPATL--PDTIQEM  246 (754)
T ss_pred             cCceEEE--eCCC--CcCcCCccc--ccCCcEEEecCCCCCcCC-hhhccCCCEEECCCCcccc--CChhh--hccccEE
Confidence            4566666  4322  222444433  257999999998876432 2335799999999987741  12111  2579999


Q ss_pred             EeeccCCCCccccccCCCceEEEccccccchhhhhh-cCCCccEEEeeeeCCCCCceeec-------------------c
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEV-------------------A  281 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~~~~~-------------------~  281 (347)
                      ++++|.. ..+...-..+|+.|+++++.  +..+.. -.++|+.|.++++..... +..+                   .
T Consensus       247 ~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt~L-P~~lp~sL~~L~Ls~N~Lt~LP~~  322 (754)
T PRK15370        247 ELSINRI-TELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIRTL-PAHLPSGITHLNVQSNSLTALPET  322 (754)
T ss_pred             ECcCCcc-CcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCccccC-cccchhhHHHHHhcCCccccCCcc
Confidence            9998863 33322222589999999764  444433 235899999885443211 0000                   1


Q ss_pred             CCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhhh-ccCcccceEeccccc
Q 019031          282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCK  341 (347)
Q Consensus       282 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~L~~L~l~~c~  341 (347)
                      ..++|+.|++.++.++.  +...+  .++|+.|++++|... .+. ...++|+.|+|.+|.
T Consensus       323 l~~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~  378 (754)
T PRK15370        323 LPPGLKTLEAGENALTS--LPASL--PPELQVLDVSKNQIT-VLPETLPPTITTLDVSRNA  378 (754)
T ss_pred             ccccceeccccCCcccc--CChhh--cCcccEEECCCCCCC-cCChhhcCCcCEEECCCCc
Confidence            22456666666555443  22111  357888888876422 221 123578888888774

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.55  E-value=5.8e-05  Score=74.44  Aligned_cols=102  Identities=16%  Similarity=0.085  Sum_probs=45.0

Q ss_pred             cCceEEEeeeecCCcccccccccccc-cccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCC
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPL  217 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~  217 (347)
                      .++++|+  +.+...-....+..++. +|+|++|.+.+..+....   ...+||||..|+++++.++.-   .-++..++
T Consensus       122 ~nL~~Ld--I~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLD--ISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKN  196 (699)
T ss_pred             HhhhhcC--ccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhcccc
Confidence            4555555  43322222233333332 355555555554433221   334555555555555555211   11344555


Q ss_pred             ccEEEeeccCCCCc---cccccCCCceEEEcccc
Q 019031          218 LEDLCFSNCWGLKH---LCVSKASKLKIMEIRSF  248 (347)
Q Consensus       218 Le~L~l~~c~~~~~---~~~~~~~~L~~L~l~~~  248 (347)
                      |+.|.+.+-+....   ..+-++.+|+.|+++..
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            55555544333221   12223455555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.52  E-value=1.1e-05  Score=77.26  Aligned_cols=199  Identities=16%  Similarity=0.162  Sum_probs=100.0

Q ss_pred             hhccCcccceEEEEEecCCCCCChhHHHHHHHHHH--HcCceEEEeeeecCCcccccccccccccccccEEEEeeeeccC
Q 019031          106 FCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAV--ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ  183 (347)
Q Consensus       106 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~~--~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~  183 (347)
                      ....+.+++.|+......   ++...+.. ++...  -.....+.  +.......++-|-.++..++|++|.+.+|.+..
T Consensus        50 lg~~g~~~~~f~a~~s~~---ads~vl~q-Lq~i~d~lqkt~~lk--l~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~  123 (1096)
T KOG1859|consen   50 LGLSGAPVDYFRAYVSDN---ADSRVLEQ-LQRILDFLQKTKVLK--LLPSPARDPTEPISIFPFRSLRVLELRGCDLST  123 (1096)
T ss_pred             hccCCCCCceeEEecCCc---ccchHHHH-HHHHHHHHhhheeee--ecccCCCCCCCCceeccccceeeEEecCcchhh
Confidence            344577888888665532   22222222 22211  13445555  433344444547788899999999999998764


Q ss_pred             CCCcCCC-CCcCEEEeeeeeeChHHHHHHHhcCC-----CccEEEe--eccC--CCC--ccccccCCCceEEEccccccc
Q 019031          184 PFDSIML-CSLKKLTLERVCLDEQMVQKLASECP-----LLEDLCF--SNCW--GLK--HLCVSKASKLKIMEIRSFSEE  251 (347)
Q Consensus       184 ~~~~~~~-~~L~~L~L~~~~~~~~~l~~i~~~cp-----~Le~L~l--~~c~--~~~--~~~~~~~~~L~~L~l~~~~~~  251 (347)
                      .-+...+ ..|++|-..+.   -.+++.+++.|-     ..+-..|  .+|.  .+.  .-...-+|.|++|+++.+.  
T Consensus       124 ~~GL~~lr~qLe~LIC~~S---l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--  198 (1096)
T KOG1859|consen  124 AKGLQELRHQLEKLICHNS---LDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK--  198 (1096)
T ss_pred             hhhhHHHHHhhhhhhhhcc---HHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--
Confidence            3222222 24555533222   345555555432     1111111  1110  011  0111124667777777664  


Q ss_pred             hhhhh--hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          252 IEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       252 ~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      +.++.  ..+|.|++|+++++.......+...+|. |..|.+.++.++.  +. -+.++.+|+.|+++++
T Consensus       199 ~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~-gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  199 FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LR-GIENLKSLYGLDLSYN  264 (1096)
T ss_pred             hhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hh-hHHhhhhhhccchhHh
Confidence            33322  2667777777775544443334444444 6666666655443  22 2345666666666653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.49  E-value=0.00016  Score=71.88  Aligned_cols=32  Identities=13%  Similarity=0.036  Sum_probs=16.1

Q ss_pred             ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeee
Q 019031          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVC  202 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~  202 (347)
                      ++|++|++++|.+...+  ...++|++|++.++.
T Consensus       242 ~~Lk~LdLs~N~LtsLP--~lp~sL~~L~Ls~N~  273 (788)
T PRK15387        242 PELRTLEVSGNQLTSLP--VLPPGLLELSIFSNP  273 (788)
T ss_pred             CCCcEEEecCCccCccc--CcccccceeeccCCc
Confidence            56677777666554321  123445555544443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.26  E-value=5.3e-06  Score=65.66  Aligned_cols=62  Identities=21%  Similarity=0.131  Sum_probs=32.3

Q ss_pred             ccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeee--ChHHHHHHHhcCCCccEEEeecc
Q 019031          161 LPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNC  226 (347)
Q Consensus       161 l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~--~~~~l~~i~~~cp~Le~L~l~~c  226 (347)
                      .|+.+-...+|+.|++.++.+..-+ ....+|.|+.|+++.++.  ...+    ++.+|.||.|++.++
T Consensus        48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg----fgs~p~levldltyn  112 (264)
T KOG0617|consen   48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG----FGSFPALEVLDLTYN  112 (264)
T ss_pred             cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc----cCCCchhhhhhcccc
Confidence            3444445556666666666544322 345566666666654443  1111    344566666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.15  E-value=0.0013  Score=60.29  Aligned_cols=11  Identities=36%  Similarity=0.458  Sum_probs=5.7

Q ss_pred             CccEEEeeccC
Q 019031          217 LLEDLCFSNCW  227 (347)
Q Consensus       217 ~Le~L~l~~c~  227 (347)
                      .|+.|.+.+|.
T Consensus        95 nLe~L~Ls~Cs  105 (426)
T PRK15386         95 GLEKLTVCHCP  105 (426)
T ss_pred             hhhheEccCcc
Confidence            45555555553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.14  E-value=0.00011  Score=74.31  Aligned_cols=19  Identities=11%  Similarity=0.246  Sum_probs=13.4

Q ss_pred             eccCCCCCcEEEeeccccC
Q 019031          279 EVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       279 ~~~~~~~L~~L~L~~~~~~  297 (347)
                      .+..+++|+.|.+.++.+.
T Consensus       712 ~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  712 SLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             ccccccCcceEEEEcCCCc
Confidence            4566788888888666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.14  E-value=0.00092  Score=57.11  Aligned_cols=174  Identities=14%  Similarity=0.108  Sum_probs=104.8

Q ss_pred             cccccEEEEeeeeccCCC------CcCCCCCcCEEEeeeeee---ChH------HHHHHHhcCCCccEEEeeccCCCCc-
Q 019031          168 ANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCL---DEQ------MVQKLASECPLLEDLCFSNCWGLKH-  231 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~L~~~~~---~~~------~l~~i~~~cp~Le~L~l~~c~~~~~-  231 (347)
                      ...++.++|+|+.+....      ...+-.+|+..+++....   -++      .+-..+..||+|+..+++++..-.. 
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            578899999999876432      334456777777765522   111      2233356899999999998754221 


Q ss_pred             -----cccccCCCceEEEccccc------cchh----h-----hhhcCCCccEEEeeeeCCCCCce----eeccCCCCCc
Q 019031          232 -----LCVSKASKLKIMEIRSFS------EEIE----I-----VEISVPSLQQLTLLFYGARRPRV----VEVARSPHLK  287 (347)
Q Consensus       232 -----~~~~~~~~L~~L~l~~~~------~~~~----~-----~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~~L~  287 (347)
                           -.+++...|++|.+.+|-      ..+.    .     -..+.|.|+++.+..+.......    ..+..-.+|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence                 113344789999999885      1111    1     11256889988886433321111    1122335788


Q ss_pred             EEEeeccccCchHHHHH----HccCCCCCEEeecCcC--C-----chhhhccCcccceEeccccc
Q 019031          288 KLDLVSVYFADNEFNHL----ISKFPSLEDLFVTRCC--L-----PGKIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       288 ~L~L~~~~~~~~~~~~~----~~~~~~L~~L~l~~c~--~-----~~~~~~~~~~L~~L~l~~c~  341 (347)
                      .+.+..+.|...++..+    +..+.+|+.|+++...  .     +......++.|+.|.+..|-
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            88888777766533322    3457888888888752  1     12223356677888777774

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.14  E-value=7.4e-05  Score=64.48  Aligned_cols=126  Identities=17%  Similarity=0.160  Sum_probs=82.7

Q ss_pred             CCCCcCEEEeeeeeeC--hHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEE
Q 019031          189 MLCSLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQL  265 (347)
Q Consensus       189 ~~~~L~~L~L~~~~~~--~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L  265 (347)
                      .+..|++++|+++.++  +++    ..-.|.++.|+++.+.....-+...+++|..|+++++. +....+....-|.+.|
T Consensus       282 TWq~LtelDLS~N~I~~iDES----vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDES----VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchhhhhhh----hhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence            3667888888888772  333    33468889998888765433345567889999998875 3444455577788888


Q ss_pred             EeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031          266 TLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       266 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      .+..+..  .....++.+=+|..||+.++++..-.-..-++++|-|++|.+.+.+
T Consensus       358 ~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  358 KLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            8873222  1111234556677788888877653333445678888888887764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.13  E-value=0.0057  Score=62.28  Aligned_cols=148  Identities=21%  Similarity=0.178  Sum_probs=80.2

Q ss_pred             ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCCCccc--cccCCCceEEEc
Q 019031          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEI  245 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~--~~~~~~L~~L~l  245 (347)
                      ...+.+.+.++.+........+|+|++|-+.++.. -...-...+...|.|..|++++|.....+.  |+.+-+||.|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            45677777766655444566777888888877752 111122335667888888888877655442  445667777777


Q ss_pred             cccccchhhhhh---cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccc-cCchHHHHHHccCCCCCEEeecC
Q 019031          246 RSFSEEIEIVEI---SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTR  318 (347)
Q Consensus       246 ~~~~~~~~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~  318 (347)
                      .++.  +..++.   ....|.+|++...+...........+++|+.|.+.... -.+.....-+..+.+|+.|.+..
T Consensus       603 ~~t~--I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  603 SDTG--ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             cCCC--ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            7764  333333   33345555554332212222222336777777774443 12222222234445555554443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.00036  Score=60.31  Aligned_cols=149  Identities=16%  Similarity=0.119  Sum_probs=94.7

Q ss_pred             cccEEEEeeeeccCCC----CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCC---CCccccccCCCce
Q 019031          170 SVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG---LKHLCVSKASKLK  241 (347)
Q Consensus       170 ~L~~L~L~~~~l~~~~----~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~---~~~~~~~~~~~L~  241 (347)
                      .++-|.+-+|.++..+    ....+..++.++|.++.+ ..+.+..|+.+.|.|+.|+|+.+..   ++.+.. ...+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceE
Confidence            4556677777776554    345678899999999999 7778999999999999999986543   233332 246999


Q ss_pred             EEEccccc---cchhhhhhcCCCccEEEeeeeCCC---CCceeeccCCCCCcEEEeeccccC-chHHHHHHccCCCCCEE
Q 019031          242 IMEIRSFS---EEIEIVEISVPSLQQLTLLFYGAR---RPRVVEVARSPHLKKLDLVSVYFA-DNEFNHLISKFPSLEDL  314 (347)
Q Consensus       242 ~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~~L~~L  314 (347)
                      .|.+.+..   ..........|.++.|.++.+...   ....-.-..-+.+++|+...|... ......+...|||+..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            99999875   222233346677777777633210   000001122346666766555432 22334555667888888


Q ss_pred             eecCc
Q 019031          315 FVTRC  319 (347)
Q Consensus       315 ~l~~c  319 (347)
                      .+..|
T Consensus       205 ~v~e~  209 (418)
T KOG2982|consen  205 FVCEG  209 (418)
T ss_pred             eeecC
Confidence            88777

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.08  E-value=0.0015  Score=55.86  Aligned_cols=132  Identities=17%  Similarity=0.134  Sum_probs=85.1

Q ss_pred             CCCCCcCEEEeeeeee---ChHHHHHHHhcCCCccEEEeeccCCCC--c-------------cccccCCCceEEEccccc
Q 019031          188 IMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLK--H-------------LCVSKASKLKIMEIRSFS  249 (347)
Q Consensus       188 ~~~~~L~~L~L~~~~~---~~~~l~~i~~~cp~Le~L~l~~c~~~~--~-------------~~~~~~~~L~~L~l~~~~  249 (347)
                      ..||.|++.+|+.+.+   ..+.+..++++...|+.|.+.+|..-.  .             ..+..-|.|+......+.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            3455555555555555   345677888888999999999885311  0             112235889998888765


Q ss_pred             --cchh----hhhhcCCCccEEEeeeeCCCCC-----ceeeccCCCCCcEEEeeccccCchHHH---HHHccCCCCCEEe
Q 019031          250 --EEIE----IVEISVPSLQQLTLLFYGARRP-----RVVEVARSPHLKKLDLVSVYFADNEFN---HLISKFPSLEDLF  315 (347)
Q Consensus       250 --~~~~----~~~~~~p~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~---~~~~~~~~L~~L~  315 (347)
                        .+..    .....--+|+.+.+..++....     ....+..+++|+.|||..+.++..+..   ..+...+.|+.|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence              1111    1112336899999987666432     111245689999999998888754433   3345567889999


Q ss_pred             ecCc
Q 019031          316 VTRC  319 (347)
Q Consensus       316 l~~c  319 (347)
                      +..|
T Consensus       249 lnDC  252 (388)
T COG5238         249 LNDC  252 (388)
T ss_pred             ccch
Confidence            9999

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.06  E-value=0.00017  Score=71.03  Aligned_cols=58  Identities=21%  Similarity=0.099  Sum_probs=30.8

Q ss_pred             cccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeC-hHHHHHHHhcCCCccEEEeeccC
Q 019031          168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLD-EQMVQKLASECPLLEDLCFSNCW  227 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~-~~~l~~i~~~cp~Le~L~l~~c~  227 (347)
                      .+.|+.|.+.++.+....  ...++++||.|+|+++++. -.+  +-+...+.||+|.++++.
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa--s~~~kle~LeeL~LSGNk  418 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA--SKLRKLEELEELNLSGNK  418 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH--HHHhchHHhHHHhcccch
Confidence            345666666666655433  3456666666666666552 111  113445556666666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.01  E-value=0.00017  Score=47.68  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=16.5

Q ss_pred             cCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          281 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       281 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ..+++|++|+++++.++.- ....+..+++|++|++++|
T Consensus        22 ~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   22 SNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             cCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            3445555555544444321 1123344555555555443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.92  E-value=0.00075  Score=44.56  Aligned_cols=16  Identities=31%  Similarity=0.455  Sum_probs=9.5

Q ss_pred             ccCCCCCcEEEeeccc
Q 019031          280 VARSPHLKKLDLVSVY  295 (347)
Q Consensus       280 ~~~~~~L~~L~L~~~~  295 (347)
                      +..+++|+.|+++++.
T Consensus        45 f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   45 FSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTTSTTESEEEETSSS
T ss_pred             HcCCCCCCEEeCcCCc
Confidence            4556666666665543

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.90  E-value=0.00019  Score=60.84  Aligned_cols=106  Identities=23%  Similarity=0.167  Sum_probs=63.0

Q ss_pred             cCCCccEEEeeccCCCCccccccCCCceEEEccccc----cchhhhhhcCCCccEEEeeeeCCCCCce-eeccCCCCCcE
Q 019031          214 ECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKK  288 (347)
Q Consensus       214 ~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~  288 (347)
                      ....|+.|++.++...+....+.+|+||+|.++.+.    .++..+...+|+|+++.++.+....... -....+++|..
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            344455555666654444455566788888888773    3455555567888888888544432111 12355677778


Q ss_pred             EEeeccccCc--hHHHHHHccCCCCCEEeecCc
Q 019031          289 LDLVSVYFAD--NEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       289 L~L~~~~~~~--~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      |++..+..+.  .--..++..+|+|++|+-..+
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            8886554432  223345566788888776654

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.70  E-value=0.0067  Score=55.79  Aligned_cols=70  Identities=19%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             CCCCcCEEEeeeeeeChHHHHHHHhcCC-CccEEEeeccCCCCccccccCCCceEEEccccccchhhhhhcCCCccEEEe
Q 019031          189 MLCSLKKLTLERVCLDEQMVQKLASECP-LLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTL  267 (347)
Q Consensus       189 ~~~~L~~L~L~~~~~~~~~l~~i~~~cp-~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l  267 (347)
                      .++++++|++++|.+..  +.    ..| +|+.|.+.+|..+..+.-.-.++|++|.+.+|. .+..+   .++|+.|.+
T Consensus        50 ~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs-~L~sL---P~sLe~L~L  119 (426)
T PRK15386         50 EARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP-EISGL---PESVRSLEI  119 (426)
T ss_pred             HhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc-ccccc---ccccceEEe
Confidence            35777777777764411  11    122 477777777766543321111467777777764 23221   235666666


Q ss_pred             e
Q 019031          268 L  268 (347)
Q Consensus       268 ~  268 (347)
                      .
T Consensus       120 ~  120 (426)
T PRK15386        120 K  120 (426)
T ss_pred             C
Confidence            4

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.55  E-value=0.0038  Score=33.25  Aligned_cols=25  Identities=48%  Similarity=0.832  Sum_probs=22.4

Q ss_pred             CcCEEEeeeeee-ChHHHHHHHhcCC
Q 019031          192 SLKKLTLERVCL-DEQMVQKLASECP  216 (347)
Q Consensus       192 ~L~~L~L~~~~~-~~~~l~~i~~~cp  216 (347)
                      +||+|+|..+.+ ++..++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 6668999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.54  E-value=0.00071  Score=57.39  Aligned_cols=103  Identities=23%  Similarity=0.125  Sum_probs=65.9

Q ss_pred             cccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCC--Cccc-cccCCCce
Q 019031          166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL--KHLC-VSKASKLK  241 (347)
Q Consensus       166 ~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~--~~~~-~~~~~~L~  241 (347)
                      -....|+.|++.++.+........+|+|++|.++.+.. ....+..++..||+|.+|.++++..-  ..+. ...+++|+
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            33456777777777766544556677888998888844 33456666777899999988877532  1111 22356778


Q ss_pred             EEEccccc-----cchhhhhhcCCCccEEEee
Q 019031          242 IMEIRSFS-----EEIEIVEISVPSLQQLTLL  268 (347)
Q Consensus       242 ~L~l~~~~-----~~~~~~~~~~p~L~~L~l~  268 (347)
                      +|.+.+|.     .+-..+..-+|+|+.|+-.
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            88888776     2333444456777766654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.51  E-value=0.00087  Score=58.63  Aligned_cols=39  Identities=28%  Similarity=0.611  Sum_probs=36.2

Q ss_pred             ccccccccCCc----hHHHHHHhcCCChhhhhhhcccchhhHh
Q 019031           14 VVAMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQ   52 (347)
Q Consensus        14 ~~~~d~is~LP----ddiL~~Ils~L~~~~~~~~s~vskrW~~   52 (347)
                      +-+.|.|..||    |+|.+.||+||+..+++.+-+|||+|++
T Consensus        69 mLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   69 MLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            34579999999    9999999999999999999999999985

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.00041  Score=59.41  Aligned_cols=96  Identities=20%  Similarity=0.235  Sum_probs=64.7

Q ss_pred             CCCceEEEccccccchhhhh--hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEE
Q 019031          237 ASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  314 (347)
Q Consensus       237 ~~~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L  314 (347)
                      +.+.++|+.++|.  +..+.  ..+|-||.|.++-+..  .....+..|.+|+.|.|..+.|.+-.-.+.+.++|+|++|
T Consensus        18 l~~vkKLNcwg~~--L~DIsic~kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCG--LDDISICEKMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCC--ccHHHHHHhcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            3467778888874  54444  4788888888872211  1122356788899988887888776566677888999998


Q ss_pred             eecCcCCch--------hhhccCcccceEe
Q 019031          315 FVTRCCLPG--------KIKISSNQLKNLL  336 (347)
Q Consensus       315 ~l~~c~~~~--------~~~~~~~~L~~L~  336 (347)
                      -|..++...        .+....|+|++|+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888753322        2344678888876

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.24  E-value=0.0037  Score=58.19  Aligned_cols=79  Identities=19%  Similarity=0.081  Sum_probs=37.6

Q ss_pred             ccccEEEEeeeeccCCCCcCCC--CCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccc-cCCCceEEEc
Q 019031          169 NSVTNLRLVWCRLEQPFDSIML--CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-KASKLKIMEI  245 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~~~~~~--~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~-~~~~L~~L~l  245 (347)
                      +.++.|.+.++.+.........  ++|+.|+++++.+..-.  .-+..+|.|+.|.+.++....-.... ..+.|+.|.+
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            4456666655554433222222  25666666666542110  12445666666666665432211111 3356666666


Q ss_pred             cccc
Q 019031          246 RSFS  249 (347)
Q Consensus       246 ~~~~  249 (347)
                      +++.
T Consensus       194 s~N~  197 (394)
T COG4886         194 SGNK  197 (394)
T ss_pred             cCCc
Confidence            6553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.17  E-value=0.001  Score=59.66  Aligned_cols=57  Identities=19%  Similarity=0.122  Sum_probs=37.3

Q ss_pred             CceEEEeeeecCCcccccccccccc-cccccEEEEeeeeccCC--CCcCCCCCcCEEEeee-eee
Q 019031          143 GVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLER-VCL  203 (347)
Q Consensus       143 ~l~~L~~~l~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~-~~~  203 (347)
                      ...++.  ++  ......+|..+|. .++|+.|+|+.+.++..  ..+.++++|.+|.+.+ +.+
T Consensus        68 ~tveir--Ld--qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   68 ETVEIR--LD--QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             cceEEE--ec--cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            444455  33  3344556666665 68899999999875533  2467788888888777 554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.16  E-value=0.0072  Score=52.54  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=13.6

Q ss_pred             CCCceEEEccccc-cchhhhhhcCCCccEEEee
Q 019031          237 ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL  268 (347)
Q Consensus       237 ~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~  268 (347)
                      +.+|+.+.++.|. ..+..+...-|-|.++...
T Consensus       213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~  245 (490)
T KOG1259|consen  213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVH  245 (490)
T ss_pred             hhhhheeeeeccchhheeceeecCchhheeeee
Confidence            3445555555544 2223333334444444443

>PLN03150 hypothetical protein; Provisional

Probab=96.13  E-value=0.013  Score=57.78  Aligned_cols=80  Identities=16%  Similarity=0.082  Sum_probs=42.1

Q ss_pred             ceEEEccccc--cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeec
Q 019031          240 LKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVT  317 (347)
Q Consensus       240 L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~  317 (347)
                      ++.|.+.++.  ..+......+++|+.|+++.+......+..++.+++|+.|+|+++.+++. +...+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence            5556666553  11111222456666666664444333333455666666666666665543 23344556666666666


Q ss_pred             CcC
Q 019031          318 RCC  320 (347)
Q Consensus       318 ~c~  320 (347)
                      ++.
T Consensus       499 ~N~  501 (623)
T PLN03150        499 GNS  501 (623)
T ss_pred             CCc
Confidence            653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.89  E-value=0.00031  Score=55.84  Aligned_cols=123  Identities=19%  Similarity=0.099  Sum_probs=76.8

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~  220 (347)
                      .+++.|.  +  ......++|..+.+.+.|+.|+++.+++...+ +++.||.|+.|+|.++..++..+..-+-....|..
T Consensus        56 ~nlevln--~--~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen   56 KNLEVLN--L--SNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             hhhhhhh--c--ccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence            4566555  3  23456788989989999999999988866544 68899999999999998755544332333344555


Q ss_pred             EEeeccCCC-CccccccCCCceEEEccccc-cchhhhhhcCCCccEEEee
Q 019031          221 LCFSNCWGL-KHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL  268 (347)
Q Consensus       221 L~l~~c~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~  268 (347)
                      |.+.++..- -.-.+..+.+|+.|.+.++. -.+.+-.-....|++|.+.
T Consensus       132 lyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  132 LYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             HHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence            666555431 11233445677777777664 1111111244556666665

>PLN03150 hypothetical protein; Provisional

Probab=95.79  E-value=0.023  Score=56.17  Aligned_cols=103  Identities=17%  Similarity=0.080  Sum_probs=70.2

Q ss_pred             ccEEEeeccCCCCc--cccccCCCceEEEccccc--cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031          218 LEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (347)
Q Consensus       218 Le~L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~  293 (347)
                      ++.|+|.++.....  ..+..+++|+.|+++++.  ..+......+++|+.|+++.+......+..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            56677766643222  234567899999999886  12333345789999999997666555556678899999999998


Q ss_pred             cccCchHHHHHHccCCCCCEEeecCcC
Q 019031          294 VYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      +.++......+.....++..+++.++.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            887765444443334567778887654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.79  E-value=0.012  Score=48.34  Aligned_cols=82  Identities=18%  Similarity=0.173  Sum_probs=58.8

Q ss_pred             ccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCCC-----ccccccCC
Q 019031          167 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLK-----HLCVSKAS  238 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~~-----~~~~~~~~  238 (347)
                      ..+.|..|.|.++++....  ....+|+|++|.|.++++ .-++++. +..||+|++|.+-+++...     ...+..+|
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp  140 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP  140 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecC
Confidence            4578999999988754322  445688999999999888 5566666 4569999999998775422     12334578


Q ss_pred             CceEEEccccc
Q 019031          239 KLKIMEIRSFS  249 (347)
Q Consensus       239 ~L~~L~l~~~~  249 (347)
                      +|+.|++....
T Consensus       141 ~l~~LDF~kVt  151 (233)
T KOG1644|consen  141 SLRTLDFQKVT  151 (233)
T ss_pred             cceEeehhhhh
Confidence            88888888654

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.78  E-value=0.0048  Score=53.69  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             ccccCCchHHHHHHhc-----CCChhhhhhhcccchhhHh
Q 019031           18 DRISELPTFIIHHLMS-----YLSAKEVARTSVLSKKWNQ   52 (347)
Q Consensus        18 d~is~LPddiL~~Ils-----~L~~~~~~~~s~vskrW~~   52 (347)
                      +.|..||||||..||.     .++.+++.++|+|||.|..
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            5578999999999996     4567999999999999984

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.76  E-value=0.0001  Score=66.09  Aligned_cols=81  Identities=21%  Similarity=0.220  Sum_probs=38.5

Q ss_pred             HhcCCCccEEEeeccCC--CCccccccCCCceEEEccccccchhhhh---hcCCCccEEEeeeeCCCCCceeeccCCCCC
Q 019031          212 ASECPLLEDLCFSNCWG--LKHLCVSKASKLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGARRPRVVEVARSPHL  286 (347)
Q Consensus       212 ~~~cp~Le~L~l~~c~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L  286 (347)
                      +.+|..|.+|++..+..  +...+..+++++..|++.++.  +..+.   ....+|++|+++.+.. ...+..++++ +|
T Consensus       224 f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk--lke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL  299 (565)
T KOG0472|consen  224 FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK--LKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HL  299 (565)
T ss_pred             CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc--cccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-ee
Confidence            34455555555544321  111122245666666666654  22222   2344566666663222 2334445555 66


Q ss_pred             cEEEeecccc
Q 019031          287 KKLDLVSVYF  296 (347)
Q Consensus       287 ~~L~L~~~~~  296 (347)
                      +.|.+.|+.+
T Consensus       300 ~~L~leGNPl  309 (565)
T KOG0472|consen  300 KFLALEGNPL  309 (565)
T ss_pred             eehhhcCCch
Confidence            6666665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.75  E-value=0.013  Score=35.68  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=22.3

Q ss_pred             CCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       284 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ++|+.|++.++.+++  +...+..+++|+.|+++++
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            467777777777765  4444667777777777776

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.64  E-value=0.0073  Score=36.84  Aligned_cols=33  Identities=30%  Similarity=0.364  Sum_probs=15.9

Q ss_pred             CcCEEEeeeeeeChHHHHHHHhcCCCccEEEeecc
Q 019031          192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC  226 (347)
Q Consensus       192 ~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c  226 (347)
                      +|++|+++++.+++  +...+..+|+|+.|++++|
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            45555555555531  2222455666666666555

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.61  E-value=0.0027  Score=51.95  Aligned_cols=80  Identities=19%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             cccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCCCccc---cccCCCceEE
Q 019031          170 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIM  243 (347)
Q Consensus       170 ~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~---~~~~~~L~~L  243 (347)
                      .++.++-+++.+...+  ...+++.+++|.+..|.. ++..++.+-...|+|+.|+|++|..++.--   +..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3566666666544333  456788888999998877 888888888888999999999998776532   3346788888


Q ss_pred             Eccccc
Q 019031          244 EIRSFS  249 (347)
Q Consensus       244 ~l~~~~  249 (347)
                      .+.+-.
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            877644

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.55  E-value=0.0014  Score=63.23  Aligned_cols=157  Identities=22%  Similarity=0.220  Sum_probs=88.5

Q ss_pred             ccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEee-----------ccCCCCccc
Q 019031          169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFS-----------NCWGLKHLC  233 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~-----------~c~~~~~~~  233 (347)
                      ++++.|++....-..+.   ...-|.+|+.|.|.+|.+ ...++..+-   .+||.|.=.           .|.+    .
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~Sl~Al~~v~ascgg----d  156 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNSLDALRHVFASCGG----D  156 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHH---HhhhhhhhhccHHHHHHHHHHhcc----c
Confidence            56777777665533322   456788999999999988 544554443   234544321           2211    1


Q ss_pred             cccCC---CceEEEccccccchhhhh---hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHcc
Q 019031          234 VSKAS---KLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISK  307 (347)
Q Consensus       234 ~~~~~---~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~  307 (347)
                      +.+-+   +|...+++.+  .+..+.   .-+|.|++|+++.+......  .+..+++|++|||+++.++.  +..+-..
T Consensus       157 ~~ns~~Wn~L~~a~fsyN--~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~--vp~l~~~  230 (1096)
T KOG1859|consen  157 ISNSPVWNKLATASFSYN--RLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH--VPQLSMV  230 (1096)
T ss_pred             cccchhhhhHhhhhcchh--hHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc--ccccchh
Confidence            11111   3443344433  232222   25689999999844333222  55789999999999888764  2222222


Q ss_pred             CCCCCEEeecCcCCchhh-hccCcccceEecc
Q 019031          308 FPSLEDLFVTRCCLPGKI-KISSNQLKNLLFR  338 (347)
Q Consensus       308 ~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~  338 (347)
                      --.|..|.++++..-+-- .....+|+.|+++
T Consensus       231 gc~L~~L~lrnN~l~tL~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  231 GCKLQLLNLRNNALTTLRGIENLKSLYGLDLS  262 (1096)
T ss_pred             hhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence            223889999885221111 2245567777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.16  E-value=0.017  Score=53.70  Aligned_cols=167  Identities=20%  Similarity=0.137  Sum_probs=102.4

Q ss_pred             cCceEEEeeeecCCcccccccccccccc-cccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSAN-SVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le  219 (347)
                      ..+..++  +.  ......++......+ +|+.|+++++.+.... ....+++|+.|.++.+.+.+-  .......+.|+
T Consensus       116 ~~l~~L~--l~--~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l--~~~~~~~~~L~  189 (394)
T COG4886         116 TNLTSLD--LD--NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLN  189 (394)
T ss_pred             cceeEEe--cC--CcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhh--hhhhhhhhhhh
Confidence            3466666  43  234445555555554 8999999998877642 568899999999999987422  23233688899


Q ss_pred             EEEeeccCCCCccccc--cCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031          220 DLCFSNCWGLKHLCVS--KASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (347)
Q Consensus       220 ~L~l~~c~~~~~~~~~--~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (347)
                      .|++.++.. ..+...  ....|+.|.+.++. ...........++..+.+..... ....-.++.+++++.|++.++.+
T Consensus       190 ~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         190 NLDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             heeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee-eeccchhccccccceeccccccc
Confidence            999988753 333321  22348888888773 11222223455555555431111 11123446677788888887777


Q ss_pred             CchHHHHHHccCCCCCEEeecCc
Q 019031          297 ADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ++..-   +....+++.|++++.
T Consensus       268 ~~i~~---~~~~~~l~~L~~s~n  287 (394)
T COG4886         268 SSISS---LGSLTNLRELDLSGN  287 (394)
T ss_pred             ccccc---ccccCccCEEeccCc
Confidence            65322   566778888888763

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.05  E-value=0.041  Score=45.25  Aligned_cols=78  Identities=15%  Similarity=0.099  Sum_probs=52.6

Q ss_pred             ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeC--hHHHHHHHhcCCCccEEEeeccCCCC--c-cccccCCCceEE
Q 019031          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNCWGLK--H-LCVSKASKLKIM  243 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~i~~~cp~Le~L~l~~c~~~~--~-~~~~~~~~L~~L  243 (347)
                      .....++|+.+.+........++.|.+|.|+.++++  +..+.   .-.|+|..|.+.++....  . .....||+|+.|
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            345667788877665556778889999999999882  33333   346888888888764321  1 123457888888


Q ss_pred             Eccccc
Q 019031          244 EIRSFS  249 (347)
Q Consensus       244 ~l~~~~  249 (347)
                      .+-++.
T Consensus       119 tll~Np  124 (233)
T KOG1644|consen  119 TLLGNP  124 (233)
T ss_pred             eecCCc
Confidence            887765

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.96  E-value=0.015  Score=52.86  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=33.8

Q ss_pred             cccCCchHHHHHHhcCCC-hhhhhhhcccchhhHhhhcc
Q 019031           19 RISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVS   56 (347)
Q Consensus        19 ~is~LPddiL~~Ils~L~-~~~~~~~s~vskrW~~l~~~   56 (347)
                      .+++||+|+|..|..+|+ .-|+++.+.|||.||.-...
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            478999999999999997 78999999999999975443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.94  E-value=0.00074  Score=60.76  Aligned_cols=153  Identities=19%  Similarity=0.125  Sum_probs=65.8

Q ss_pred             ccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccC
Q 019031          159 YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKA  237 (347)
Q Consensus       159 ~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~  237 (347)
                      ..+|..+.+|.+|..+.+.++.+...+ ...++..|++|++.++-.+  .+..-+++..+|+-|++..+....--.+.+|
T Consensus       150 ~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~~lPef~gc  227 (565)
T KOG0472|consen  150 SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRNKIRFLPEFPGC  227 (565)
T ss_pred             ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhcccccCCCCCcc
Confidence            344555555555555555555433222 1223555555555444331  1111133444455555544432222234445


Q ss_pred             CCceEEEccccccchhhhh----hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCE
Q 019031          238 SKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLED  313 (347)
Q Consensus       238 ~~L~~L~l~~~~~~~~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~  313 (347)
                      ..|++|++..+.  ++.+.    .+.+++..|++..+.. ...+..+-.+++|+.||++++.++.  +..-++++ +|+.
T Consensus       228 s~L~Elh~g~N~--i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~is~--Lp~sLgnl-hL~~  301 (565)
T KOG0472|consen  228 SLLKELHVGENQ--IEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNNDISS--LPYSLGNL-HLKF  301 (565)
T ss_pred             HHHHHHHhcccH--HHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCcccc--CCcccccc-eeee
Confidence            555555555442  22221    1445555555542211 1222222334555555555555543  23333334 4555


Q ss_pred             EeecCc
Q 019031          314 LFVTRC  319 (347)
Q Consensus       314 L~l~~c  319 (347)
                      |.+.+.
T Consensus       302 L~leGN  307 (565)
T KOG0472|consen  302 LALEGN  307 (565)
T ss_pred             hhhcCC
Confidence            555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.72  E-value=0.0017  Score=55.68  Aligned_cols=98  Identities=14%  Similarity=0.077  Sum_probs=63.3

Q ss_pred             CceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEE
Q 019031          143 GVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDL  221 (347)
Q Consensus       143 ~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L  221 (347)
                      +++.|.  ..++...+..+.   ..++.|++|.|+-+.+..-.....|.+|+.|.|..+.+ +-..+.. +.+.|+|..|
T Consensus        20 ~vkKLN--cwg~~L~DIsic---~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~L   93 (388)
T KOG2123|consen   20 NVKKLN--CWGCGLDDISIC---EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTL   93 (388)
T ss_pred             Hhhhhc--ccCCCccHHHHH---HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhH
Confidence            555555  443333333222   34678888888888877655667888888888888888 4444554 5678888888


Q ss_pred             EeeccCCCC-------ccccccCCCceEEEcc
Q 019031          222 CFSNCWGLK-------HLCVSKASKLKIMEIR  246 (347)
Q Consensus       222 ~l~~c~~~~-------~~~~~~~~~L~~L~l~  246 (347)
                      +|..++...       ...++.+|+|++|+=.
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV  125 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhccCc
Confidence            887654322       1223457888887544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.66  E-value=0.012  Score=48.20  Aligned_cols=61  Identities=20%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             cCCCccEEEeeeeCCCCC--ceeeccCCCCCcEEEee-ccccCchHHHHHHccCCCCCEEeecCc
Q 019031          258 SVPSLQQLTLLFYGARRP--RVVEVARSPHLKKLDLV-SVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~L~-~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      .++.++.|.+..|...+.  .....+-.++|+.|+|+ +..|++.++.. +..++||+.|.+.+-
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDL  186 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCc
Confidence            345555555553332221  11112345677777775 33466555543 345677777776664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.02  E-value=0.0059  Score=57.27  Aligned_cols=79  Identities=19%  Similarity=0.135  Sum_probs=41.2

Q ss_pred             ccccccEEEEeeeeccCCCC-cCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031          167 SANSVTNLRLVWCRLEQPFD-SIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~~-~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~  244 (347)
                      .+++|..|++..+.+..... ...+++|+.|+++++.+ .-..+    ..++.|+.|++.++.....-....+++|+.+.
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLESLKSLKLLD  168 (414)
T ss_pred             cccceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCccchhhhccc
Confidence            34566666666665554433 45566666666666665 22222    23344666666665432222222345666666


Q ss_pred             ccccc
Q 019031          245 IRSFS  249 (347)
Q Consensus       245 l~~~~  249 (347)
                      +.++.
T Consensus       169 l~~n~  173 (414)
T KOG0531|consen  169 LSYNR  173 (414)
T ss_pred             CCcch
Confidence            66554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.25  E-value=0.15  Score=38.92  Aligned_cols=13  Identities=31%  Similarity=0.626  Sum_probs=5.5

Q ss_pred             HhcCCCccEEEee
Q 019031          212 ASECPLLEDLCFS  224 (347)
Q Consensus       212 ~~~cp~Le~L~l~  224 (347)
                      +.+|++|+.+.+.
T Consensus        31 F~~~~~l~~i~~~   43 (129)
T PF13306_consen   31 FSNCTSLKSINFP   43 (129)
T ss_dssp             TTT-TT-SEEEES
T ss_pred             ccccccccccccc
Confidence            3445555555554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=91.41  E-value=0.12  Score=27.33  Aligned_cols=17  Identities=18%  Similarity=0.370  Sum_probs=12.0

Q ss_pred             CcccceEecccccCccc
Q 019031          329 SNQLKNLLFRSCKYLKL  345 (347)
Q Consensus       329 ~~~L~~L~l~~c~~l~~  345 (347)
                      +++|++|+|++|.++++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46777777777777763

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=91.38  E-value=0.081  Score=51.03  Aligned_cols=42  Identities=26%  Similarity=0.547  Sum_probs=38.2

Q ss_pred             hcccccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhh
Q 019031           12 ETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (347)
Q Consensus        12 ~~~~~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l   53 (347)
                      .+..+.|.++.||-|+..+||++|+.++++.+++||+.|+.+
T Consensus       100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            445678999999999999999999999999999999999854

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.78  E-value=0.034  Score=52.18  Aligned_cols=126  Identities=22%  Similarity=0.092  Sum_probs=82.8

Q ss_pred             ccccccEEEEeeeeccC-CCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEc
Q 019031          167 SANSVTNLRLVWCRLEQ-PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  245 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l  245 (347)
                      .+..++.+.+..+.+.. ......+.+|+.|++.++.+.  .+..++..+++|+.|+++++....-..+..++.|+.|++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL  147 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccchhhccchhhhee
Confidence            34566666666666554 224678899999999998872  122325679999999999886444444555677999999


Q ss_pred             cccccchhhhhh--cCCCccEEEeeeeCCCCCce-eeccCCCCCcEEEeeccccC
Q 019031          246 RSFSEEIEIVEI--SVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       246 ~~~~~~~~~~~~--~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~  297 (347)
                      .++.  +..+..  ..++|+.+++.++....... . ...+.+++.+.+.++.+.
T Consensus       148 ~~N~--i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  148 SGNL--ISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             ccCc--chhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            9885  433332  26778888887544322111 1 366788888888766544

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=90.05  E-value=0.25  Score=26.04  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=11.0

Q ss_pred             CCCcCEEEeeeeee-ChHHHHHH
Q 019031          190 LCSLKKLTLERVCL-DEQMVQKL  211 (347)
Q Consensus       190 ~~~L~~L~L~~~~~-~~~~l~~i  211 (347)
                      ||+|++|+|++|.. ++.++..+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            34555555555543 55555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.36  E-value=0.28  Score=25.22  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=13.9

Q ss_pred             CCCcCEEEeeeeeeChHHHHHH
Q 019031          190 LCSLKKLTLERVCLDEQMVQKL  211 (347)
Q Consensus       190 ~~~L~~L~L~~~~~~~~~l~~i  211 (347)
                      +++|++|+|+++.+++.++..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4677888888887777766654

...

>PF13013 F-box-like_2: F-box-like domain

Probab=87.32  E-value=0.37  Score=35.70  Aligned_cols=30  Identities=13%  Similarity=0.237  Sum_probs=27.0

Q ss_pred             cccCCchHHHHHHhcCCChhhhhhhcccch
Q 019031           19 RISELPTFIIHHLMSYLSAKEVARTSVLSK   48 (347)
Q Consensus        19 ~is~LPddiL~~Ils~L~~~~~~~~s~vsk   48 (347)
                      .+.+||+|++..||.+-+..+.......|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            478899999999999999999988887776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.55  E-value=1.1  Score=34.06  Aligned_cols=78  Identities=17%  Similarity=0.185  Sum_probs=33.9

Q ss_pred             ccccccEEEEeee-eccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccC-CCCccccccCCCceEEE
Q 019031          167 SANSVTNLRLVWC-RLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW-GLKHLCVSKASKLKIME  244 (347)
Q Consensus       167 ~~~~L~~L~L~~~-~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~-~~~~~~~~~~~~L~~L~  244 (347)
                      .|.+|+.+.+... .--......++++|+.+++......-.  ...+.+|+.|+.+.+.+.. .+..-....+++|+.+.
T Consensus        10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             T-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCCCEEEECCCeeEeChhhcccccccccccccccccccc--eeeeecccccccccccccccccccccccccccccccc
Confidence            3567777776532 111111356677788887765311111  1235667778888875421 12222233356666666


Q ss_pred             cc
Q 019031          245 IR  246 (347)
Q Consensus       245 l~  246 (347)
                      +.
T Consensus        88 ~~   89 (129)
T PF13306_consen   88 IP   89 (129)
T ss_dssp             ET
T ss_pred             cC
Confidence            64

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=86.31  E-value=0.092  Score=49.81  Aligned_cols=154  Identities=19%  Similarity=0.112  Sum_probs=85.2

Q ss_pred             ccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc-cccccCCC
Q 019031          161 LPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKASK  239 (347)
Q Consensus       161 l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~-~~~~~~~~  239 (347)
                      +|..+.+...|+.|+|+.+.+...+...++=-|+.|.++++.++.-..+  +...+.|..|+.+.|....- -.+..+.+
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~--ig~~~tl~~ld~s~nei~slpsql~~l~s  190 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE--IGLLPTLAHLDVSKNEIQSLPSQLGYLTS  190 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc--cccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence            3444455566677777766655444344445577777776665211111  23456677777776653221 11234566


Q ss_pred             ceEEEccccccchhhhhh--cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHH-HHHHccCCCCCEEee
Q 019031          240 LKIMEIRSFSEEIEIVEI--SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF-NHLISKFPSLEDLFV  316 (347)
Q Consensus       240 L~~L~l~~~~~~~~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l  316 (347)
                      |+.|.+..+.  +..+..  ..-.|..|+++ |+.....++.+..+..|++|-|.++.+...-- ...-+...=.|+|++
T Consensus       191 lr~l~vrRn~--l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~  267 (722)
T KOG0532|consen  191 LRDLNVRRNH--LEDLPEELCSLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLST  267 (722)
T ss_pred             HHHHHHhhhh--hhhCCHHHhCCceeeeecc-cCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence            7777777664  333321  23346777777 45545566777888888888888777654211 111122334566777


Q ss_pred             cCc
Q 019031          317 TRC  319 (347)
Q Consensus       317 ~~c  319 (347)
                      +-|
T Consensus       268 qA~  270 (722)
T KOG0532|consen  268 QAC  270 (722)
T ss_pred             hhc
Confidence            766

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=85.69  E-value=0.65  Score=42.35  Aligned_cols=35  Identities=17%  Similarity=0.118  Sum_probs=16.0

Q ss_pred             cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEee
Q 019031          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  292 (347)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~  292 (347)
                      ...+|+.|++.++......+..+.....|..|.+-
T Consensus       320 ~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  320 GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             ccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            34445555554333333333344445555555553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=83.74  E-value=0.054  Score=51.32  Aligned_cols=156  Identities=19%  Similarity=0.069  Sum_probs=97.9

Q ss_pred             ccccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCC-Ccccc
Q 019031          157 TVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL-KHLCV  234 (347)
Q Consensus       157 ~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~-~~~~~  234 (347)
                      ..-++|.....|..|+.+.|+.+.+.... ...++..|+.|+|+.+.++.-...  +-.|| |+.|.+.++... ....+
T Consensus        86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lp-Lkvli~sNNkl~~lp~~i  162 (722)
T KOG0532|consen   86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLP-LKVLIVSNNKLTSLPEEI  162 (722)
T ss_pred             ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh--hhcCc-ceeEEEecCccccCCccc
Confidence            44456655556677888888775433222 456788899999998877322222  33466 888888876532 12334


Q ss_pred             ccCCCceEEEccccccchhhhh---hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCC
Q 019031          235 SKASKLKIMEIRSFSEEIEIVE---ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (347)
Q Consensus       235 ~~~~~L~~L~l~~~~~~~~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L  311 (347)
                      ...++|..|+.+.|.  +..+.   .....|+.|.+..+.. ..++-.+. .-.|..||++++.+..  ++--+..+..|
T Consensus       163 g~~~tl~~ld~s~ne--i~slpsql~~l~slr~l~vrRn~l-~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~L  236 (722)
T KOG0532|consen  163 GLLPTLAHLDVSKNE--IQSLPSQLGYLTSLRDLNVRRNHL-EDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHL  236 (722)
T ss_pred             ccchhHHHhhhhhhh--hhhchHHhhhHHHHHHHHHhhhhh-hhCCHHHh-CCceeeeecccCceee--cchhhhhhhhh
Confidence            456889999999885  33333   3455666666653222 11222222 3457888999888765  45556778999


Q ss_pred             CEEeecCcCC
Q 019031          312 EDLFVTRCCL  321 (347)
Q Consensus       312 ~~L~l~~c~~  321 (347)
                      ++|.|.+++.
T Consensus       237 q~l~LenNPL  246 (722)
T KOG0532|consen  237 QVLQLENNPL  246 (722)
T ss_pred             eeeeeccCCC
Confidence            9999998754

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=83.32  E-value=0.76  Score=21.52  Aligned_cols=11  Identities=18%  Similarity=0.350  Sum_probs=5.4

Q ss_pred             ccceEeccccc
Q 019031          331 QLKNLLFRSCK  341 (347)
Q Consensus       331 ~L~~L~l~~c~  341 (347)
                      +|+.|+|++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            45666666655

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=80.07  E-value=0.23  Score=38.45  Aligned_cols=98  Identities=20%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             ccEEEeeccCCCC----ccccccCCCceEEEccccc--cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEe
Q 019031          218 LEDLCFSNCWGLK----HLCVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  291 (347)
Q Consensus       218 Le~L~l~~c~~~~----~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L  291 (347)
                      +-.++|++|....    ...+...-.|+..+++++.  +-.+++.+..|-++.|.+..+... ..+..+..+|.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            3456667775421    0122233577778888774  222355666777777777633332 23334677888888888


Q ss_pred             eccccCchHHHHHHccCCCCCEEeecC
Q 019031          292 VSVYFADNEFNHLISKFPSLEDLFVTR  318 (347)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (347)
                      ..+.+..  ....+..+.++-.|+..+
T Consensus       108 ~~N~l~~--~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  108 RFNPLNA--EPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             ccCcccc--chHHHHHHHhHHHhcCCC
Confidence            7777654  233333355555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	347
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	7e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 58/346 (16%), Positives = 113/346 (32%), Gaps = 71/346 (20%)

Query: 20  ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSF 79
              LP  ++  + S L   E+ + S + K+W +L  S   L                   
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESL-----------------WQ 50

Query: 80  CVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA 139
            +     +    V   +            L   +  FR   +F+D   +       ++  
Sbjct: 51  TLDLTGKNLHPDVTGRL------------LSQGVIAFRCPRSFMDQPLAEHFSPFRVQH- 97

Query: 140 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIM-----LCSLK 194
                 +L    I       TL   +   + + NL L   RL    D I+       +L 
Sbjct: 98  -----MDLSNSVIEVS----TLHGILSQCSKLQNLSLEGLRL---SDPIVNTLAKNSNLV 145

Query: 195 KLTLERVC-LDEQMVQKLASECPLLEDLCFSNCW-----GLKHLCVSKASKLKIMEIRSF 248
           +L L       E  +Q L S C  L++L  S C+      ++      +  +  + +  +
Sbjct: 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

Query: 249 SEEIE---IVEISV--PSLQQLTLLFYGARRPRV-----VEVARSPHLKKLDLVSVY-FA 297
            + ++   +  +    P+L  L L    +    +      E  +  +L+ L L   Y   
Sbjct: 206 RKNLQKSDLSTLVRRCPNLVHLDL----SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261

Query: 298 DNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYL 343
                 L  + P+L+ L V      G +++    L +L   +C + 
Sbjct: 262 PETLLEL-GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ-INCSHF 305

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 44/333 (13%), Positives = 103/333 (30%), Gaps = 48/333 (14%)

Query: 20  ISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQ--------LYVSFPILDFDQNYF--F 68
                  +I  +M+Y+   K+    S++ ++W +        + ++             F
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 69  PGASRLDYGSFCVRKQNYSF-SETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 127
           P    L       R   ++   E    ++      +    +           L  +  + 
Sbjct: 73  PNLRSLK-LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ----------LKSVHFRR 121

Query: 128 SAPIVDRWIRLAVENG---VRELDF---ENITDENTVYTLPQAIFSANSVTNLRLVWCRL 181
              + D  +    +     +  L        T +     L   +     +  L +     
Sbjct: 122 M-IVSDLDLDRLAKARADDLETLKLDKCSGFTTD----GLLSIVTHCRKIKTLLMEESSF 176

Query: 182 EQPFDSIMLCSLKKLT-LERVCLD--------EQMVQKLASECPLLEDLCFSNCWGLKHL 232
            +     +    +  T LE +            + ++ +A  C  L  +   +   L+ +
Sbjct: 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236

Query: 233 CV-SKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEV--ARSPHLK 287
                A+ L+     S +E+I + E  +++   ++L  L      P  + +    +  ++
Sbjct: 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296

Query: 288 KLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC 320
           KLDL+       +   LI K P+LE L      
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 21/167 (12%)

Query: 192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW-----GLKHLCVSKASKLKIMEIR 246
            L+++ L+R+ + +  ++ +A      + L  S+C      GL  +  +    LK +++R
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELDLR 164

Query: 247 SFS------EEIEIVEISVPSLQQLTLLFYGAR-RPRVVE--VARSPHLKKLDLVSVYFA 297
                      +     +  SL  L +    +      +E  V R P+LK L L +    
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL-NRAVP 223

Query: 298 DNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK 344
             +   L+ + P LE+L                 + + L  +    K
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYT-----AEVRPDVYSGLSVALSGCK 265

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 51/359 (14%), Positives = 119/359 (33%), Gaps = 53/359 (14%)

Query: 18  DRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQ--------LYVSFPILDFDQNYF- 67
                 P  ++ H+ S++   K+    S++ K W +        +++             
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR 63

Query: 68  -FPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK 126
            FP    ++      +     F+     +  +V   +         +++ RL    +   
Sbjct: 64  RFPKVRSVE---LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120

Query: 127 GSAPIVDRWIRLAVENGVRELDF---ENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ 183
               I   +         + L     E  + +     L     +  ++  L L    ++ 
Sbjct: 121 CLELIAKSFKNF------KVLVLSSCEGFSTD----GLAAIAATCRNLKELDLRESDVDD 170

Query: 184 PFDSIMLC------SLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNCWGLKHLC-- 233
                +        SL  L +  +   +    +++L + CP L+ L  +    L+ L   
Sbjct: 171 VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL 230

Query: 234 VSKASKLKIMEIRSFSEEI-----EIVEISVPSLQQLTLL--FYGARRPRVVEVARS-PH 285
           + +A +L+ +    ++ E+       + +++   ++L  L  F+ A    +  V      
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 286 LKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK 344
           L  L+L        +   L+ + P L+ L+V          I    L+ L   +CK L+
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-------IEDAGLEVLA-STCKDLR 341

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 38/257 (14%), Positives = 83/257 (32%), Gaps = 37/257 (14%)

Query: 120 LTFLDVKGSAPIVDRWIRLAVENGVRELD---FENITDENTVYTLPQAIFSANSVTNLRL 176
           L  L +  + P+      L     + EL    +      +    L  A+     +  L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 177 VWCRLEQPFDSI--MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG------ 228
            W  +     ++  +   L  L L    +    + KL  +CP L+ L   +         
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332

Query: 229 -------LKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR---VV 278
                  L+ L V  +    +    + +E+  +V +S     +L  + Y  R+     ++
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVS-MGCPKLESVLYFCRQMTNAALI 390

Query: 279 EVARS-PHLKKLDLV----------SVYFADNEFNHLISKFPSLEDLFVTRC-CLPGKIK 326
            +AR+ P++ +  L           ++   D  F  ++     L  L ++          
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY 450

Query: 327 ISSN--QLKNLLFRSCK 341
           I +   +++ L      
Sbjct: 451 IGTYAKKMEMLSVAFAG 467

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 7/34 (20%), Positives = 19/34 (55%)

Query: 20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53
          ++ LP  +  +++S+LS  ++ +    +  WN+ 
Sbjct: 5  LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 54/375 (14%), Positives = 115/375 (30%), Gaps = 94/375 (25%)

Query: 31  LMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQN----YFFPGASRLDYGSFC---VRK 83
             S LS +E+    +     +     F  L   Q      F     R++Y  F    ++ 
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKT 100

Query: 84  QNYSFSETVKKFMD-----------FVDASLVR---FCKLKFCIQKFR--LFLTFLDVKG 127
           +    S   + +++           F   ++ R   + KL+  + + R    +    V G
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 128 S-----APIV--DRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR 180
           S     A  V     ++  ++  +  L+ +N     TV  + Q +        +   W  
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-----YQIDPNWTS 215

Query: 181 LEQPFDSIML------CSLKKLTLERV---CL-------DEQMVQKLASECPLL---EDL 221
                 +I L        L++L   +    CL       + +        C +L      
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 222 CFSNCWGLKHLCVSKASKLKIMEIR-SFSEE------IEIVEISVPSLQQLTLLFYGARR 274
             ++      L  +  + + +     + + +      ++ ++     L            
Sbjct: 276 QVTD-----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL------------ 318

Query: 275 PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC--LPGKIKISSNQL 332
           PR V +  +P    +       A+      I    +  D +    C  L   I+ S N L
Sbjct: 319 PREV-LTTNPRRLSI------IAE-----SIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 333 KNLLFRSCKYLKLCV 347
           +   +R   + +L V
Sbjct: 367 EPAEYRKM-FDRLSV 380

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 18 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53
          D I+ LP  I   + +YL  +++  +  +S+ WN++
Sbjct: 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.55
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.42
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.42
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.4
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.35
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.34
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.34
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.31
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.27
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.23
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.2
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.2
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.2
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.19
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.1
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.03
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.02
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.99
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.99
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.98
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.98
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.97
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.97
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.96
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.96
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.93
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.93
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.83
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.64
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.58
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.53
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.5
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.5
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.5
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.2
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.2
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.18
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.16
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.03
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.98
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.97
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.96
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.95
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.9
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.9
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.82
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.26
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.19
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.45
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.84
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.91
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.69
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	88.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	87.12

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=1.2e-24  Score=196.46  Aligned_cols=280  Identities=20%  Similarity=0.265  Sum_probs=182.2

Q ss_pred             ccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhcc---CceEEeeCCCcCCCCCCCCCCccccccccchhhhhh
Q 019031           16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS---FPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETV   92 (347)
Q Consensus        16 ~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (347)
                      +...++.||||++.+||+||+.+|+++++.|||+|+++...   ...+++....+.                        
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~------------------------   60 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH------------------------   60 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC------------------------
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC------------------------
Confidence            35678999999999999999999999999999999998532   223344333221                        


Q ss_pred             HhHHHHHHHHHHhhhccCcccceEEEEEecCCCCCChhHHHHHHHHHHHcCceEEEeeeecCCccccccccccccccccc
Q 019031           93 KKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVT  172 (347)
Q Consensus        93 ~~f~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~  172 (347)
                         ...+....      ...++.+.+......  .....      .....++++|+  +..+......++..+..+++|+
T Consensus        61 ---~~~~~~~~------~~~l~~L~l~~n~l~--~~~~~------~~~~~~L~~L~--L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           61 ---PDVTGRLL------SQGVIAFRCPRSFMD--QPLAE------HFSPFRVQHMD--LSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             ---HHHHHHHH------HTTCSEEECTTCEEC--SCCCS------CCCCBCCCEEE--CTTCEECHHHHHHHHTTBCCCS
T ss_pred             ---HHHHHhhh------hccceEEEcCCcccc--ccchh------hccCCCCCEEE--ccCCCcCHHHHHHHHhhCCCCC
Confidence               11222222      124455543311100  00000      00125888888  6544322233555666789999


Q ss_pred             EEEEeeeeccCCC--CcCCCCCcCEEEeeee-eeChHHHHHHHhcCCCccEEEeeccCCCCccc----cccCC-CceEEE
Q 019031          173 NLRLVWCRLEQPF--DSIMLCSLKKLTLERV-CLDEQMVQKLASECPLLEDLCFSNCWGLKHLC----VSKAS-KLKIME  244 (347)
Q Consensus       173 ~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~-~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~----~~~~~-~L~~L~  244 (347)
                      +|++++|.+....  ....+++|++|+++++ .+++..+..++.+||+|++|++.+|..+....    +..++ +|+.|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            9999998765322  3456899999999999 56877888888999999999999995555321    34578 999999


Q ss_pred             ccccc-----cchhhhhhcCCCccEEEeeeeC-CCCCceeeccCCCCCcEEEeecc-ccCchHHHHHHccCCCCCEEeec
Q 019031          245 IRSFS-----EEIEIVEISVPSLQQLTLLFYG-ARRPRVVEVARSPHLKKLDLVSV-YFADNEFNHLISKFPSLEDLFVT  317 (347)
Q Consensus       245 l~~~~-----~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~L~~L~l~  317 (347)
                      +++|.     ..+......+|+|++|+++++. ........+..+++|+.|+++++ .+.+..+ ..+..+++|+.|+++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVF  280 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECT
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEecc
Confidence            99983     2333444578999999998665 33333345678899999999777 4555544 334679999999999


Q ss_pred             CcCCchhhhccCcccceEeccc
Q 019031          318 RCCLPGKIKISSNQLKNLLFRS  339 (347)
Q Consensus       318 ~c~~~~~~~~~~~~L~~L~l~~  339 (347)
                      +|-..+.+......+++|++.+
T Consensus       281 ~~i~~~~~~~l~~~l~~L~l~~  302 (336)
T 2ast_B          281 GIVPDGTLQLLKEALPHLQINC  302 (336)
T ss_dssp             TSSCTTCHHHHHHHSTTSEESC
T ss_pred             CccCHHHHHHHHhhCcceEEec
Confidence            9822112222223466666643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.89  E-value=1.4e-23  Score=203.59  Aligned_cols=216  Identities=14%  Similarity=0.174  Sum_probs=100.4

Q ss_pred             ccccccCCchHHHHHHhcCCC-hhhhhhhcccchhhHhhhc-cCceEEeeCCCcCCCCC----CCCCCcccccc------
Q 019031           16 AMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYV-SFPILDFDQNYFFPGAS----RLDYGSFCVRK------   83 (347)
Q Consensus        16 ~~d~is~LPddiL~~Ils~L~-~~~~~~~s~vskrW~~l~~-~~~~l~~~~~~~~~~~~----~~~~~~~~~~~------   83 (347)
                      +.|.++.|||||+.+||+||+ .+|++++++|||||+++.. ....+.+..........    .+.........      
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence            359999999999999999999 9999999999999998721 11222222211000000    00000000000      


Q ss_pred             ---ccchhhhhhHhHHHHHHHHHHhhhccCcccceEEEEEecCCCCCChhHHHHHHHHH--HHcCceEEEeeeecCC-cc
Q 019031           84 ---QNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDE-NT  157 (347)
Q Consensus        84 ---~~~~~~~~~~~f~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~--~~~~l~~L~~~l~~~~-~~  157 (347)
                         ...++...   +...+....    .....++.+.+....    ... .   .+...  ..+++++|+  +..+. ..
T Consensus        82 ~~l~~~~~~~~---~~~~l~~l~----~~~~~L~~L~L~~~~----~~~-~---~~~~l~~~~~~L~~L~--L~~~~~~~  144 (594)
T 2p1m_B           82 FNLVPDGWGGY---VYPWIEAMS----SSYTWLEEIRLKRMV----VTD-D---CLELIAKSFKNFKVLV--LSSCEGFS  144 (594)
T ss_dssp             GTCSCTTSCCB---CHHHHHHHH----HHCTTCCEEEEESCB----CCH-H---HHHHHHHHCTTCCEEE--EESCEEEE
T ss_pred             cccccccccch---hhHHHHHHH----HhCCCCCeEEeeCcE----EcH-H---HHHHHHHhCCCCcEEe--CCCcCCCC
Confidence               00000000   011111111    123445555544221    000 1   11111  124666666  43321 11


Q ss_pred             cccccccccccccccEEEEeeeeccCCC------CcCCCCCcCEEEeeeee--eChHHHHHHHhcCCCccEEEeeccCCC
Q 019031          158 VYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNCWGL  229 (347)
Q Consensus       158 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~L~~~~--~~~~~l~~i~~~cp~Le~L~l~~c~~~  229 (347)
                      ...++.....|++|++|++++|.+....      ....+++|++|+++++.  ++...+..++.+||+|+.|++.+|...
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            1123333335677777777776644321      23356777777777775  466677777777777888777777443


Q ss_pred             Cccc--cccCCCceEEEcccc
Q 019031          230 KHLC--VSKASKLKIMEIRSF  248 (347)
Q Consensus       230 ~~~~--~~~~~~L~~L~l~~~  248 (347)
                      ..+.  +..+++|+.|.+..+
T Consensus       225 ~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          225 EKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHHHHHHHHCTTCSEEECSBC
T ss_pred             HHHHHHHhcCCcceEcccccc
Confidence            3211  123456666654433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.88  E-value=1.4e-22  Score=196.58  Aligned_cols=40  Identities=18%  Similarity=0.450  Sum_probs=32.4

Q ss_pred             ccccc----CCchHHHHHHhcCC-ChhhhhhhcccchhhHhhhcc
Q 019031           17 MDRIS----ELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVS   56 (347)
Q Consensus        17 ~d~is----~LPddiL~~Ils~L-~~~~~~~~s~vskrW~~l~~~   56 (347)
                      .|+++    .||||++.+||+|| +.+|++++++|||||++++..
T Consensus         6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~   50 (592)
T 3ogk_B            6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE   50 (592)
T ss_dssp             ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence            45565    89999999999999 799999999999999988533

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.59  E-value=7.1e-15  Score=131.98  Aligned_cols=180  Identities=18%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             cccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc-----
Q 019031          160 TLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-----  233 (347)
Q Consensus       160 ~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~-----  233 (347)
                      .+|..+..+++|++|+|+++.+...+ ....+++|++|+|+++.+.  .+..-+..+++|+.|++.+|.....+.     
T Consensus        95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~  172 (328)
T 4fcg_A           95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLAS  172 (328)
T ss_dssp             SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred             hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence            44444555555666666555544221 2345555666666555543  112224455556666665554333221     


Q ss_pred             ------cccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHc
Q 019031          234 ------VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLIS  306 (347)
Q Consensus       234 ------~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~  306 (347)
                            +.++++|+.|+++++. ..+......+++|++|+++++.... ....+..+++|+.|+++++.+... +...+.
T Consensus       173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~  250 (328)
T 4fcg_A          173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRN-YPPIFG  250 (328)
T ss_dssp             EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCB-CCCCTT
T ss_pred             ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhh-hHHHhc
Confidence                  1124555555555553 1111112245555555555333321 111244555555555555443322 122234


Q ss_pred             cCCCCCEEeecCcCCchhh---hccCcccceEecccccCc
Q 019031          307 KFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYL  343 (347)
Q Consensus       307 ~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~~l  343 (347)
                      .+++|+.|++++|.....+   ...+++|+.|+|++|..+
T Consensus       251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            4555555555555333322   123445555555555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.55  E-value=2.4e-14  Score=128.69  Aligned_cols=201  Identities=20%  Similarity=0.204  Sum_probs=142.6

Q ss_pred             HHHHHHHHcCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCC---CCcCCCCCcCEEEeeeeeeChHHHHH
Q 019031          134 RWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP---FDSIMLCSLKKLTLERVCLDEQMVQK  210 (347)
Q Consensus       134 ~~i~~~~~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~  210 (347)
                      ..+......+++.++  +...  .....+..++.+++|++|++++|.+...   .....+++|++|+|+++.+++.....
T Consensus        62 ~~~~~~~~~~l~~L~--l~~n--~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~  137 (336)
T 2ast_B           62 DVTGRLLSQGVIAFR--CPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT  137 (336)
T ss_dssp             HHHHHHHHTTCSEEE--CTTC--EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH
T ss_pred             HHHHhhhhccceEEE--cCCc--cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH
Confidence            445555567899998  5432  1222233456789999999999886532   14578899999999999887666665


Q ss_pred             HHhcCCCccEEEeeccCCCCcc----ccccCCCceEEEcccc-c-c--chhhhhhcCC-CccEEEeeeeC--CC-CCcee
Q 019031          211 LASECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSF-S-E--EIEIVEISVP-SLQQLTLLFYG--AR-RPRVV  278 (347)
Q Consensus       211 i~~~cp~Le~L~l~~c~~~~~~----~~~~~~~L~~L~l~~~-~-~--~~~~~~~~~p-~L~~L~l~~~~--~~-~~~~~  278 (347)
                       +..+++|+.|++.+|..+...    .+.++++|+.|++++| . .  .+......+| +|++|+++++.  .. .....
T Consensus       138 -l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~  216 (336)
T 2ast_B          138 -LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST  216 (336)
T ss_dssp             -HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred             -HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence             566999999999999655532    1345799999999998 4 1  2344455788 99999998552  22 12223


Q ss_pred             eccCCCCCcEEEeeccc-cCchHHHHHHccCCCCCEEeecCcCCchh----hhccCcccceEecccc
Q 019031          279 EVARSPHLKKLDLVSVY-FADNEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQLKNLLFRSC  340 (347)
Q Consensus       279 ~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~L~~L~l~~c  340 (347)
                      .+..+++|+.|+++++. +++..+. .+..+++|+.|++++|.....    ....+++|+.|++.+|
T Consensus       217 ~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          217 LVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            45678999999998887 6655454 456789999999999853322    2346789999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.42  E-value=5.6e-13  Score=128.99  Aligned_cols=111  Identities=10%  Similarity=0.009  Sum_probs=75.9

Q ss_pred             CcccceEEEEEecCCCCCChhHHHHHHHHHHHcCceEEEeeeecCCc-ccccccccccccccccEEEEeeeeccCCC---
Q 019031          110 KFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWCRLEQPF---  185 (347)
Q Consensus       110 ~~~l~~l~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~L~~~l~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~---  185 (347)
                      ...++.+.+....     .......|+......++++|+  +..+.. ....++.....|++|++|+|++|.+....   
T Consensus       111 ~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~--L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~  183 (592)
T 3ogk_B          111 LRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLK--LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW  183 (592)
T ss_dssp             CTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEE--EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred             CCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEE--CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence            4678888876331     122444555555445699999  654331 22233333346899999999999865432   


Q ss_pred             ---CcCCCCCcCEEEeeeeeeC---hHHHHHHHhcCCCccEEEeeccC
Q 019031          186 ---DSIMLCSLKKLTLERVCLD---EQMVQKLASECPLLEDLCFSNCW  227 (347)
Q Consensus       186 ---~~~~~~~L~~L~L~~~~~~---~~~l~~i~~~cp~Le~L~l~~c~  227 (347)
                         ....+++|++|+++++.++   ...+..++.+||+|+.|++.+|.
T Consensus       184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence               2346899999999888774   67788888899999999998874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.42  E-value=2.9e-13  Score=121.49  Aligned_cols=192  Identities=17%  Similarity=0.110  Sum_probs=139.1

Q ss_pred             HcCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHH--------
Q 019031          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKL--------  211 (347)
Q Consensus       141 ~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i--------  211 (347)
                      ..+++.|+  +..+...  .+|..+..+++|++|++++|.+...+ ....+++|++|+++++......-..+        
T Consensus       103 l~~L~~L~--L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          103 LSHLQHMT--IDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GTTCSEEE--EESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             CCCCCEEE--CCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            36899999  6543332  67777888999999999999876433 46789999999999986522111111        


Q ss_pred             HhcCCCccEEEeeccCCCCcc--ccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcE
Q 019031          212 ASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKK  288 (347)
Q Consensus       212 ~~~cp~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~  288 (347)
                      +.++++|+.|++.+|.. ..+  .+..+++|+.|++++|. ..+......+++|+.|+++++......+..++.+++|+.
T Consensus       179 ~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             EEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             hccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence            23599999999999853 232  35568999999999986 333333347899999999966665555566788999999


Q ss_pred             EEeeccccCchHHHHHHccCCCCCEEeecCcCCchhhhc---cCcccceEecc
Q 019031          289 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI---SSNQLKNLLFR  338 (347)
Q Consensus       289 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~---~~~~L~~L~l~  338 (347)
                      |+++++.+... +...+..+++|+.|++++|.....+..   ..++|+.+.+.
T Consensus       258 L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          258 LILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             EECTTCTTCCB-CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             EECCCCCchhh-cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            99988766543 233467899999999999976665533   45667777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.40  E-value=3e-12  Score=113.78  Aligned_cols=186  Identities=13%  Similarity=0.094  Sum_probs=111.4

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++++|+  +..+...  .++ .+..+++|++|++++|.+........+++|++|+++++.+..-  . -+..+++|+.|
T Consensus        41 ~~L~~L~--l~~~~i~--~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L  112 (308)
T 1h6u_A           41 DGITTLS--AFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTL  112 (308)
T ss_dssp             HTCCEEE--CTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEE
T ss_pred             CCcCEEE--eeCCCcc--Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEE
Confidence            4677777  5432221  222 3455677788888777765443456777788888877776322  1 25667778888


Q ss_pred             EeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  300 (347)
                      ++.+|.......+..+++|+.|+++++. ..+.. ...+++|+.|+++++.......  +..+++|+.|+++++.+++..
T Consensus       113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence            7777754332235556777777777775 12221 2356777777777544433222  567777777777777666532


Q ss_pred             HHHHHccCCCCCEEeecCcCCchh-hhccCcccceEeccccc
Q 019031          301 FNHLISKFPSLEDLFVTRCCLPGK-IKISSNQLKNLLFRSCK  341 (347)
Q Consensus       301 ~~~~~~~~~~L~~L~l~~c~~~~~-~~~~~~~L~~L~l~~c~  341 (347)
                      .   +..+++|+.|++++|..... ....+++|+.|++++++
T Consensus       190 ~---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          190 P---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             G---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred             h---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence            1   55677777777777643221 12355677777776554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.38  E-value=4.9e-12  Score=114.13  Aligned_cols=173  Identities=14%  Similarity=0.123  Sum_probs=86.5

Q ss_pred             ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeCh-HHHH------------------HHHhcCCCccEEEeec
Q 019031          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDE-QMVQ------------------KLASECPLLEDLCFSN  225 (347)
Q Consensus       165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~-~~l~------------------~i~~~cp~Le~L~l~~  225 (347)
                      +..+++|++|++++|.+........+++|++|+++++.+.. ..+.                  ..+..+++|+.|++.+
T Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~  230 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN  230 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred             hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccC
Confidence            34455666666666554433234455555555555554421 1100                  0034455555555555


Q ss_pred             cCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHH
Q 019031          226 CWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHL  304 (347)
Q Consensus       226 c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~  304 (347)
                      |.......+..+++|+.|++++|. ..+ .....+++|++|+++++.....  ..+..+++|+.|+++++.+.+... ..
T Consensus       231 n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~  306 (347)
T 4fmz_A          231 NKITDLSPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EV  306 (347)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HH
T ss_pred             CccCCCcchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hH
Confidence            533222223445566666666554 111 1122456666666664433221  124556677777776666654332 34


Q ss_pred             HccCCCCCEEeecCcCCchhh-hccCcccceEeccccc
Q 019031          305 ISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCK  341 (347)
Q Consensus       305 ~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c~  341 (347)
                      +..+++|+.|++++|+..... ...+++|+.|+++++.
T Consensus       307 l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          307 IGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV  344 (347)
T ss_dssp             HHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred             hhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence            455677777777776432221 2355677777776664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.35  E-value=1.7e-12  Score=117.59  Aligned_cols=178  Identities=15%  Similarity=0.060  Sum_probs=85.6

Q ss_pred             cccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeee-eChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCce
Q 019031          168 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLK  241 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~  241 (347)
                      +++|++|+++++.+....   ....+++|++|+++++. ++.- ....+.++++|+.|++.+|.....  ..+..+++|+
T Consensus       123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  201 (353)
T 2z80_A          123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS  201 (353)
T ss_dssp             CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc-CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence            445555555554433211   13344555555555442 1110 011133445555555554432111  1223345555


Q ss_pred             EEEccccc-cchhhh-hhcCCCccEEEeeeeCCCCCcee---eccCCCCCcEEEeeccccCchH---HHHHHccCCCCCE
Q 019031          242 IMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVV---EVARSPHLKKLDLVSVYFADNE---FNHLISKFPSLED  313 (347)
Q Consensus       242 ~L~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~  313 (347)
                      .|++.++. ..+... ...+++|+.|+++++........   .....+.++.+++....+.+..   +...+..+++|+.
T Consensus       202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~  281 (353)
T 2z80_A          202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE  281 (353)
T ss_dssp             EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred             eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence            55555553 111111 11355666666654333211100   1123455666666666555543   3344677899999


Q ss_pred             EeecCcCCch---hhhccCcccceEecccccCcccc
Q 019031          314 LFVTRCCLPG---KIKISSNQLKNLLFRSCKYLKLC  346 (347)
Q Consensus       314 L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~l~~~  346 (347)
                      |+++++....   .+...+++|+.|++++++....|
T Consensus       282 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             EECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            9999874321   22346789999999888755443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.35  E-value=1.4e-12  Score=114.50  Aligned_cols=174  Identities=15%  Similarity=0.034  Sum_probs=78.9

Q ss_pred             cccccccEEEEeeeeccCC--CCcCCCCCcCEEEeeeee-eChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCc
Q 019031          166 FSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKL  240 (347)
Q Consensus       166 ~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L  240 (347)
                      ..+++|++|+++++.+...  .....+++|++|+++++. +..-. ...+..+++|+.|++.+|.....  ..+..+++|
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            3455666666665543321  133455666666666554 31110 11134456666666655542211  113344566


Q ss_pred             eEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecC
Q 019031          241 KIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (347)
Q Consensus       241 ~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (347)
                      +.|+++++. ..+.. ....+++|++|+++++.........+..+++|+.|++.++.+.... ...+..+++|+.|++++
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~  210 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFA  210 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCC
Confidence            666666553 11111 1124556666666533332111112344556666666555554321 22334455666666665


Q ss_pred             cCCch---hhhccCcccceEeccccc
Q 019031          319 CCLPG---KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       319 c~~~~---~~~~~~~~L~~L~l~~c~  341 (347)
                      +....   .....+++|+.|++++++
T Consensus       211 n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          211 NNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CcCCcCCHHHcccCcccCEEeccCCC
Confidence            52211   112344556666655544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.34  E-value=1.1e-11  Score=111.82  Aligned_cols=186  Identities=16%  Similarity=0.059  Sum_probs=118.8

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLED  220 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~  220 (347)
                      .++++|+  +..+...  .++ .+..+++|++|++++|.+........+++|++|+++++.. ...  .. +..+++|+.
T Consensus        88 ~~L~~L~--L~~n~i~--~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~  159 (347)
T 4fmz_A           88 VKLTNLY--IGTNKIT--DIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNY  159 (347)
T ss_dssp             TTCCEEE--CCSSCCC--CCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCE
T ss_pred             CcCCEEE--ccCCccc--Cch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccc--cc-hhhCCCCcE
Confidence            5677777  4432221  122 3455677777777777655443456677777777777744 211  11 566777777


Q ss_pred             EEeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCch
Q 019031          221 LCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (347)
Q Consensus       221 L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  299 (347)
                      |++.+|.......+..+++|+.|++++|. ..+.. ...+++|+.+.++.+.......  +..+++|+.|+++++.++..
T Consensus       160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~  236 (347)
T 4fmz_A          160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL  236 (347)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             EEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC
Confidence            77777754333335567788888888775 22222 3367788888887544433222  57788999999988887763


Q ss_pred             HHHHHHccCCCCCEEeecCcCCch-hhhccCcccceEeccccc
Q 019031          300 EFNHLISKFPSLEDLFVTRCCLPG-KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       300 ~~~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~L~~L~l~~c~  341 (347)
                      ..   +..+++|+.|++++|.... .....+++|+.|++++|.
T Consensus       237 ~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~  276 (347)
T 4fmz_A          237 SP---LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ  276 (347)
T ss_dssp             GG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cc---hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc
Confidence            22   6778999999999874322 223466789999988874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.34  E-value=7.7e-13  Score=128.02  Aligned_cols=85  Identities=18%  Similarity=0.191  Sum_probs=57.1

Q ss_pred             hcCCCccEEEeeeeCCCCCceeecc-CCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchh----hhccCcc
Q 019031          257 ISVPSLQQLTLLFYGARRPRVVEVA-RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQ  331 (347)
Q Consensus       257 ~~~p~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~  331 (347)
                      ..+++|++|++++ .........+. .+++|+.|+++++.+++..+..+...+++|+.|++++|.....    +...+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3556666666652 11111111122 3788888888888888877777777889999999998865322    2345788


Q ss_pred             cceEecccccC
Q 019031          332 LKNLLFRSCKY  342 (347)
Q Consensus       332 L~~L~l~~c~~  342 (347)
                      |+.|++++|+.
T Consensus       508 L~~L~l~~~~~  518 (594)
T 2p1m_B          508 MRSLWMSSCSV  518 (594)
T ss_dssp             SSEEEEESSCC
T ss_pred             CCEEeeeCCCC
Confidence            99999988875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.32  E-value=3.6e-12  Score=111.17  Aligned_cols=173  Identities=15%  Similarity=0.088  Sum_probs=116.2

Q ss_pred             HcCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccE
Q 019031          141 ENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  220 (347)
Q Consensus       141 ~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~  220 (347)
                      ..++++|.  +......  . ...+..+++|++|++++|.+........+++|++|+++++.++.- ....+.++++|+.
T Consensus        40 l~~L~~L~--l~~~~i~--~-~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  113 (272)
T 3rfs_A           40 LNSIDQII--ANNSDIK--S-VQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKE  113 (272)
T ss_dssp             HTTCCEEE--CTTSCCC--C-CTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred             ccceeeee--eCCCCcc--c-ccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCE
Confidence            36788888  5433221  2 223556788999999998876554567888999999998877421 1223567899999


Q ss_pred             EEeeccCCCCc--cccccCCCceEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031          221 LCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (347)
Q Consensus       221 L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (347)
                      |++.+|.....  -.+..+++|+.|++++|. ..+.. ....+++|+.|+++.+.........++.+++|+.|++.++.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            99988864321  124567889999999885 22221 123678899999986555433333356788999999988877


Q ss_pred             CchHHHHHHccCCCCCEEeecCcC
Q 019031          297 ADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      +.. ....+..+++|+.|++++++
T Consensus       194 ~~~-~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          194 KSV-PDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             Ccc-CHHHHhCCcCCCEEEccCCC
Confidence            652 22345678899999998763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.31  E-value=4.9e-12  Score=112.64  Aligned_cols=67  Identities=18%  Similarity=0.179  Sum_probs=33.0

Q ss_pred             cccccccccccccEEEEeeeeccC--CCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccC
Q 019031          160 TLPQAIFSANSVTNLRLVWCRLEQ--PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  227 (347)
Q Consensus       160 ~l~~~~~~~~~L~~L~L~~~~l~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~  227 (347)
                      .+|..+..+++|++|+++++.+..  +.....+++|++|+++++.+... +...+..+++|+.|++.+|.
T Consensus        92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSC
T ss_pred             cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCc
Confidence            344444555566666666655431  11344555666666665555211 11123455666666665554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.31  E-value=1.1e-11  Score=110.21  Aligned_cols=166  Identities=13%  Similarity=0.085  Sum_probs=126.6

Q ss_pred             ccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcc
Q 019031          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~  246 (347)
                      .+++|++|++.++.+........+++|++|+|+++.+.+-.  . +..+++|+.|++.+|....--.+..+++|+.|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence            46789999999998765545678999999999999883322  2 78899999999999864333345668999999999


Q ss_pred             ccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchh-
Q 019031          247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK-  324 (347)
Q Consensus       247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~-  324 (347)
                      +|. ..+.. ...+++|++|.++++.......  +..+++|+.|+++++.+++..  . +..+++|+.|+++++..... 
T Consensus       116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          116 STQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCCccCcCh
Confidence            987 22222 3478999999999655543322  678999999999999887632  2 67899999999999843221 


Q ss_pred             hhccCcccceEeccccc
Q 019031          325 IKISSNQLKNLLFRSCK  341 (347)
Q Consensus       325 ~~~~~~~L~~L~l~~c~  341 (347)
                      .....++|+.|+++++.
T Consensus       190 ~l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          190 PLASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             GGGGCTTCCEEECTTSC
T ss_pred             hhcCCCCCCEEEccCCc
Confidence            14567899999998875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.29  E-value=5.8e-12  Score=118.00  Aligned_cols=194  Identities=16%  Similarity=0.062  Sum_probs=117.9

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le  219 (347)
                      .+++.|+  +..+... ...+..+..+++|++|+|++|.+....  ....+++|++|+|+++.+..-. ...+..+++|+
T Consensus        99 ~~L~~L~--Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~  174 (452)
T 3zyi_A           99 HHLEVLQ--LGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLM  174 (452)
T ss_dssp             TTCCEEE--CCSSCCC-EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred             CCCCEEE--CCCCccC-CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCccc
Confidence            4666666  4332111 111223344677777777777654332  2456777777777777663111 12355677788


Q ss_pred             EEEeeccCCCCccc---cccCCCceEEEccccccchhhh--hhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecc
Q 019031          220 DLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (347)
Q Consensus       220 ~L~l~~c~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~  294 (347)
                      .|++.+|..+..+.   +.++++|+.|+++++.  +..+  ...+++|+.|+++++.........+..+++|+.|++.++
T Consensus       175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             EEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             EEeCCCCCCccccChhhccCCCCCCEEECCCCc--ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence            88887766655433   3456788888888775  2222  225678888888755443333345677888888888877


Q ss_pred             ccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecccccC
Q 019031          295 YFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCKY  342 (347)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~  342 (347)
                      .+.... ...+..+++|+.|+++++....   ......++|+.|+|.+++.
T Consensus       253 ~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          253 QVSLIE-RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CCCEEC-TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cCceEC-HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            766432 2345678888888888873322   2234567888888877653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.29  E-value=3.3e-11  Score=113.27  Aligned_cols=144  Identities=17%  Similarity=0.107  Sum_probs=60.3

Q ss_pred             ccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcc
Q 019031          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~  246 (347)
                      .+++|++|++++|.+........+++|++|+++++.+.+-   ..+..+++|+.|++.+|.......+..+++|+.|+++
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  273 (466)
T 1o6v_A          197 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG  273 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             cCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC
Confidence            3445555555554433322233455555555555544211   1134455555555555533222223344555555555


Q ss_pred             ccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          247 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       247 ~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ++. ..... ...+++|+.|+++++.......  ++.+++|+.|+++++.+++...   +..+++|+.|++++|
T Consensus       274 ~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          274 ANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS
T ss_pred             CCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC
Confidence            543 11111 1234455555554332221111  3344455555554444433211   234444444444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.29  E-value=2.4e-11  Score=114.19  Aligned_cols=168  Identities=15%  Similarity=0.079  Sum_probs=126.0

Q ss_pred             ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (347)
Q Consensus       165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~  244 (347)
                      +..+++|+.|++++|.+........+++|++|+++++.+.....   +..+++|+.|++.+|.......+..+++|+.|+
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  293 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLE  293 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccccccCCCccCeEE
Confidence            44578999999999987765456788999999999998832221   678999999999988654433466789999999


Q ss_pred             ccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch
Q 019031          245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG  323 (347)
Q Consensus       245 l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  323 (347)
                      +++|. ..+.. ...+|+|+.|+++++.......  +..+++|+.|++.++.+++.   ..+..+++|+.|++++|....
T Consensus       294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCB
T ss_pred             cCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCc
Confidence            99986 22222 3478999999998665544333  57889999999998888764   346678999999999885433


Q ss_pred             hh-hccCcccceEeccccc
Q 019031          324 KI-KISSNQLKNLLFRSCK  341 (347)
Q Consensus       324 ~~-~~~~~~L~~L~l~~c~  341 (347)
                      .. ...+++|+.|++.+|.
T Consensus       368 ~~~~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          368 LTPLANLTRITQLGLNDQA  386 (466)
T ss_dssp             CGGGTTCTTCCEEECCCEE
T ss_pred             cchhhcCCCCCEEeccCCc
Confidence            22 3466889999988775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.28  E-value=3.7e-12  Score=123.65  Aligned_cols=61  Identities=18%  Similarity=0.256  Sum_probs=26.9

Q ss_pred             cCCCCCcEEEeeccccCchHH--HHHHccCCCCCEEeecCcCCchh---hhccCcccceEeccccc
Q 019031          281 ARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCK  341 (347)
Q Consensus       281 ~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~  341 (347)
                      ..+++|+.|+++++.+.+..+  ...+..+++|+.|++++|.....   ....+++|+.|+++++.
T Consensus       446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            344555555554444432111  01234455555555555532211   12234556666665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.28  E-value=6.4e-12  Score=117.28  Aligned_cols=193  Identities=16%  Similarity=0.126  Sum_probs=127.4

Q ss_pred             cCceEEEeeeecCCccccccc-ccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031          142 NGVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L  218 (347)
                      .+++.|+  +..+..  ..++ ..+..+++|++|+|++|.+....  ....+++|++|+|+++.+..-. ...+..+++|
T Consensus        88 ~~L~~L~--Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L  162 (440)
T 3zyj_A           88 RHLEILQ--LSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSL  162 (440)
T ss_dssp             SSCCEEE--CCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTC
T ss_pred             CCCCEEE--CCCCcC--CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCccc
Confidence            4677777  543221  1222 33445788888888888765433  3567888899988888763211 1235678889


Q ss_pred             cEEEeeccCCCCccc---cccCCCceEEEccccccchhhhh--hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031          219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (347)
Q Consensus       219 e~L~l~~c~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~  293 (347)
                      +.|++.+|..+..+.   +.++++|+.|+++++.  +..+.  ..+++|+.|+++++.........+..+++|+.|++.+
T Consensus       163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  240 (440)
T 3zyj_A          163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN--LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ  240 (440)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC--CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEeCCCCCCCcceeCcchhhcccccCeecCCCCc--CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence            999988876655433   4467889999998885  22222  3677889999885544333333567788999999988


Q ss_pred             cccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecccccC
Q 019031          294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCKY  342 (347)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~  342 (347)
                      +.++... ...+..+++|+.|+++++....   ......++|+.|+|++.+.
T Consensus       241 n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          241 SQIQVIE-RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CCCCEEC-TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CceeEEC-hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            8776532 2345678899999998874322   2234567899999877654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.28  E-value=8e-12  Score=114.56  Aligned_cols=176  Identities=14%  Similarity=0.057  Sum_probs=96.0

Q ss_pred             cccccccEEEEeeeeccCCC------CcCCCCCcCEEEeeeeeeChHHH---HHHHhcC---------CCccEEEeeccC
Q 019031          166 FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLDEQMV---QKLASEC---------PLLEDLCFSNCW  227 (347)
Q Consensus       166 ~~~~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~L~~~~~~~~~l---~~i~~~c---------p~Le~L~l~~c~  227 (347)
                      ..+++|++|+|++|.+....      ....+++|++|+|+++.+++...   ...+..+         ++|+.|++.+|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            34667777777777665421      23456777777777776643332   2223333         677777777665


Q ss_pred             CC-Ccc-----ccccCCCceEEEccccc-c--c---hhh-hhhcCCCccEEEeeeeCCC----CCceeeccCCCCCcEEE
Q 019031          228 GL-KHL-----CVSKASKLKIMEIRSFS-E--E---IEI-VEISVPSLQQLTLLFYGAR----RPRVVEVARSPHLKKLD  290 (347)
Q Consensus       228 ~~-~~~-----~~~~~~~L~~L~l~~~~-~--~---~~~-~~~~~p~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~  290 (347)
                      .. ..+     .+..+++|+.|.+++|. .  +   +.. ....+++|+.|+++++...    ......+..+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            32 111     12245677777777765 1  1   111 2235667777777644432    11222345667777777


Q ss_pred             eeccccCchHHHH---HHc--cCCCCCEEeecCcCCch----hhh----ccCcccceEeccccc
Q 019031          291 LVSVYFADNEFNH---LIS--KFPSLEDLFVTRCCLPG----KIK----ISSNQLKNLLFRSCK  341 (347)
Q Consensus       291 L~~~~~~~~~~~~---~~~--~~~~L~~L~l~~c~~~~----~~~----~~~~~L~~L~l~~c~  341 (347)
                      |+++.+++.....   .+.  .+++|+.|++++|....    .+.    ..+++|+.|+++++.
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            7777666543332   222  26777777777764333    121    235677777776665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.28  E-value=6.5e-12  Score=125.37  Aligned_cols=152  Identities=19%  Similarity=0.146  Sum_probs=88.6

Q ss_pred             cCceEEEeeeecCCcccccccc--cccccccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHH--HHHhc
Q 019031          142 NGVRELDFENITDENTVYTLPQ--AIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQ--KLASE  214 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~--~i~~~  214 (347)
                      .++++|+  +..+. -...+|.  .+..+++|++|++++|.+....   ....+++|++|+|+++.+++....  ..+.+
T Consensus       100 ~~L~~L~--Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A          100 ASLTSLD--LSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             TTCCEEE--CCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             CCCCEEE--CCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            4788888  54322 2223444  6677889999999988765332   226788899999988877322222  23567


Q ss_pred             CCCccEEEeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031          215 CPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (347)
Q Consensus       215 cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~  293 (347)
                      +++|+.|++.+|..........+++|+.|++++|. .........+++|++|+++++.........+..+++|+.|++++
T Consensus       177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS  256 (768)
T ss_dssp             CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred             CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence            88888888877754333334455666666666664 11111123456666666664444333333345555555555554


Q ss_pred             ccc
Q 019031          294 VYF  296 (347)
Q Consensus       294 ~~~  296 (347)
                      +.+
T Consensus       257 n~l  259 (768)
T 3rgz_A          257 NQF  259 (768)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.27  E-value=1.7e-11  Score=108.02  Aligned_cols=165  Identities=16%  Similarity=0.063  Sum_probs=121.5

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .+++.|+  +..+...  .++ .+..+++|++|++++|.+........+++|++|+++++.+..-  .. +..+++|+.|
T Consensus        46 ~~L~~L~--l~~~~i~--~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L  117 (291)
T 1h6t_A           46 NSIDQII--ANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSL  117 (291)
T ss_dssp             HTCCEEE--CTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEE
T ss_pred             CcccEEE--ccCCCcc--cCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEE
Confidence            5789888  6443222  222 3566899999999999876554477899999999999988432  22 6789999999


Q ss_pred             EeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  300 (347)
                      ++.+|....--.+..+++|+.|+++++. ..+ .....+++|+.|+++.+.......  +..+++|+.|+++++.+++- 
T Consensus       118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-  193 (291)
T 1h6t_A          118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-  193 (291)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred             ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-
Confidence            9998864333345567899999999886 222 223478899999998665544332  67899999999998888763 


Q ss_pred             HHHHHccCCCCCEEeecCcC
Q 019031          301 FNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       301 ~~~~~~~~~~L~~L~l~~c~  320 (347)
                       . .+..+++|+.|++++++
T Consensus       194 -~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          194 -R-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -G-GGTTCTTCSEEEEEEEE
T ss_pred             -h-hhccCCCCCEEECcCCc
Confidence             2 26778999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.27  E-value=2.9e-12  Score=113.61  Aligned_cols=198  Identities=14%  Similarity=0.035  Sum_probs=108.5

Q ss_pred             cCceEEEeeeecCCccc-ccccccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031          142 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le  219 (347)
                      .++++|+  +..+.... ...+.....+++|++|+++++.+.... ....+++|++|+++++.+........+..+++|+
T Consensus        52 ~~L~~L~--L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  129 (306)
T 2z66_A           52 TQLTKLS--LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  129 (306)
T ss_dssp             TTCSEEE--CCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred             ccCCEEE--CCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence            4666776  43322111 112333445677777777776644222 2456777777777777662221112245677777


Q ss_pred             EEEeeccCCCC--ccccccCCCceEEEccccc-c--chhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecc
Q 019031          220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFS-E--EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (347)
Q Consensus       220 ~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~-~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~  294 (347)
                      .|++.+|....  ...+..+++|+.|+++++. .  ........+++|++|+++++.........+..+++|+.|+++++
T Consensus       130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  209 (306)
T 2z66_A          130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN  209 (306)
T ss_dssp             EEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence            77777764321  1123446777777777765 1  12222335677777777754443222233456777777777776


Q ss_pred             ccCchHHHHHHccCCCCCEEeecCcCCchhh---hccC-cccceEecccccC
Q 019031          295 YFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISS-NQLKNLLFRSCKY  342 (347)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~-~~L~~L~l~~c~~  342 (347)
                      .++.... ..+..+++|+.|+++++......   .... ++|+.|++++++.
T Consensus       210 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          210 NFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCSBCCS-GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             ccCccCh-hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            6654211 12456777777777776433221   1223 3777777776553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.27  E-value=1.9e-11  Score=106.49  Aligned_cols=153  Identities=15%  Similarity=0.026  Sum_probs=74.8

Q ss_pred             ccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCc
Q 019031          165 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKL  240 (347)
Q Consensus       165 ~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L  240 (347)
                      +..+++|++|+++++.+....  ....+++|++|+++++.+..-. ...+.++++|+.|++.++....  ...+..+++|
T Consensus        57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A           57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence            334566666666666544322  2245666666666666552111 1224456666666666554211  1113345666


Q ss_pred             eEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecC
Q 019031          241 KIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (347)
Q Consensus       241 ~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (347)
                      +.|+++++. ..+.. ....+++|++|.++.+.........+..+++|+.|+++++.++.. ....+..+++|+.|++++
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecC
Confidence            666666654 11111 112456666666654333222222244556666666665555431 112334556666666655


Q ss_pred             c
Q 019031          319 C  319 (347)
Q Consensus       319 c  319 (347)
                      +
T Consensus       215 N  215 (270)
T 2o6q_A          215 N  215 (270)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.26  E-value=3e-12  Score=111.70  Aligned_cols=59  Identities=20%  Similarity=0.072  Sum_probs=24.1

Q ss_pred             ccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeecc
Q 019031          167 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC  226 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c  226 (347)
                      .+++|++|++++|.+....  ....+++|++|+++++.+..- ....+..+++|+.|++.+|
T Consensus        83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n  143 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHN  143 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCC
Confidence            3444555555544433221  123444555555544444211 0111334444555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.25  E-value=1.3e-11  Score=108.37  Aligned_cols=172  Identities=15%  Similarity=0.056  Sum_probs=125.0

Q ss_pred             cccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceE
Q 019031          168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKI  242 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~  242 (347)
                      .++|++|+++++.+....  ....+++|++|+++++.++.-.. ..+.++++|+.|++.++..+..+   .+..+++|+.
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            368999999998865432  46789999999999997742211 23567999999999998644433   3556799999


Q ss_pred             EEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031          243 MEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       243 L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      |++.++. ... ......+++|++|+++++.........++.+++|+.|+++++.++.. ....+..+++|+.|+++++.
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCCc
Confidence            9999986 222 22234689999999996555433333467899999999998887752 12345678999999999985


Q ss_pred             Cchh---hhccCcccceEeccccc
Q 019031          321 LPGK---IKISSNQLKNLLFRSCK  341 (347)
Q Consensus       321 ~~~~---~~~~~~~L~~L~l~~c~  341 (347)
                      ....   ....+++|+.|+++++.
T Consensus       189 l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          189 VAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ccccCHhHccCcccccEeeCCCCc
Confidence            4332   23456899999998764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.25  E-value=1.2e-11  Score=110.03  Aligned_cols=194  Identities=15%  Similarity=0.047  Sum_probs=120.9

Q ss_pred             CceEEEeeeecCCcc-cccccccccccccccEEEEee-eeccCC--CCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031          143 GVRELDFENITDENT-VYTLPQAIFSANSVTNLRLVW-CRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (347)
Q Consensus       143 ~l~~L~~~l~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L  218 (347)
                      ++++|+  +...... ...+|..+..+++|++|++++ +.+...  .....+++|++|+|+++.+.... ...+..+++|
T Consensus        51 ~l~~L~--L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L  127 (313)
T 1ogq_A           51 RVNNLD--LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTL  127 (313)
T ss_dssp             CEEEEE--EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTC
T ss_pred             eEEEEE--CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC-CHHHhCCCCC
Confidence            678888  5443222 125677788899999999995 655422  24678999999999999874221 1236789999


Q ss_pred             cEEEeeccCCCCc--cccccCCCceEEEccccc-c-chhhhhhcCC-CccEEEeeeeCCCC-------------------
Q 019031          219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-E-EIEIVEISVP-SLQQLTLLFYGARR-------------------  274 (347)
Q Consensus       219 e~L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~-~-~~~~~~~~~p-~L~~L~l~~~~~~~-------------------  274 (347)
                      +.|++.++.....  ..+..+++|+.|+++++. . .+......++ +|+.|+++.+....                   
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N  207 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN  207 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC
Confidence            9999998864322  234567888888888876 1 2222223444 77777776332211                   


Q ss_pred             ----CceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031          275 ----PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       275 ----~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~  341 (347)
                          .....+..+++|+.|+++++.++... .. +..+++|+.|+++++....   ......++|+.|+++++.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBG-GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeec-Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence                11112345667777777666655321 11 4556777777777764332   223355678888877664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.25  E-value=3.9e-11  Score=107.48  Aligned_cols=170  Identities=16%  Similarity=0.100  Sum_probs=80.9

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++++|+  +..+.. ....+..+..+++|++|+++++.+...+ ...+++|++|+++++.+.... ...+.++++|+.|
T Consensus        76 ~~L~~L~--L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L  150 (330)
T 1xku_A           76 KNLHTLI--LINNKI-SKISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVV  150 (330)
T ss_dssp             TTCCEEE--CCSSCC-CCBCTTTTTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEE
T ss_pred             CCCCEEE--CCCCcC-CeeCHHHhcCCCCCCEEECCCCcCCccC-hhhcccccEEECCCCcccccC-HhHhcCCccccEE
Confidence            4666666  433211 1112334455677777777776654322 223367777777766663221 1234567777777


Q ss_pred             EeeccCCC----CccccccCCCceEEEccccccchhhhhh-cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031          222 CFSNCWGL----KHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (347)
Q Consensus       222 ~l~~c~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (347)
                      ++.++...    ....+.++++|+.|+++++.  +..+.. ..++|++|+++++.........+..+++|+.|+++++.+
T Consensus       151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC--CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCcChhhccCCCCcCEEECCCCc--cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            77666431    11223345566666666553  211111 124555555553322211112234455555555555444


Q ss_pred             CchHHHHHHccCCCCCEEeecCc
Q 019031          297 ADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      +... ...+..+++|+.|++++|
T Consensus       229 ~~~~-~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          229 SAVD-NGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             CEEC-TTTGGGSTTCCEEECCSS
T ss_pred             ceeC-hhhccCCCCCCEEECCCC
Confidence            4311 112334455555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.24  E-value=3.1e-11  Score=113.69  Aligned_cols=196  Identities=19%  Similarity=0.093  Sum_probs=100.0

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCC--CCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le  219 (347)
                      .++++|+  +..+.. ....+..+..+++|++|+++++.+...  ....++++|++|+|+++.++.-. ...+..+++|+
T Consensus       104 ~~L~~L~--Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~  179 (477)
T 2id5_A          104 SNLTKLD--ISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLI  179 (477)
T ss_dssp             TTCCEEE--CTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCC
T ss_pred             CCCCEEE--CCCCcc-ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCc
Confidence            4677777  433211 112233344567788888877764322  14567788888888887763221 23356778888


Q ss_pred             EEEeeccCCCC--ccccccCCCceEEEccccc--cchhhh------------------------hhcCCCccEEEeeeeC
Q 019031          220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFS--EEIEIV------------------------EISVPSLQQLTLLFYG  271 (347)
Q Consensus       220 ~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~--~~~~~~------------------------~~~~p~L~~L~l~~~~  271 (347)
                      .|++.++....  ...+..+++|+.|++.+|.  ..+...                        ...+++|+.|+++++.
T Consensus       180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence            88887764311  1123345566666666543  111111                        1234455555554322


Q ss_pred             CCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecccccC
Q 019031          272 ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCKY  342 (347)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~  342 (347)
                      ........+..+++|+.|++.++.+.... ...+..+++|+.|+++++....   .....+++|+.|++.+++.
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          260 ISTIEGSMLHELLRLQEIQLVGGQLAVVE-PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             CCEECTTSCTTCTTCCEEECCSSCCSEEC-TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             CCccChhhccccccCCEEECCCCccceEC-HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            22111112344556666666555544321 1234456667777776653211   1223456777777766543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.24  E-value=4.5e-11  Score=112.02  Aligned_cols=180  Identities=18%  Similarity=0.144  Sum_probs=113.9

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      ++++.|+  +..+.-..  ++  +..+++|++|++++|.+... ....+++|++|+++++.++.-  .  +..+++|+.|
T Consensus        64 ~~L~~L~--Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L  132 (457)
T 3bz5_A           64 TGLTKLI--CTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYL  132 (457)
T ss_dssp             TTCSEEE--CCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEE
T ss_pred             CCCCEEE--ccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEE
Confidence            5677777  44332222  22  44567777777777766554 255677777777777766332  1  5667777777


Q ss_pred             EeeccCCCCccccccCCCceEEEccccccchhhhh-hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  300 (347)
                      ++.+|. +..+.+..+++|+.|++.+|. ....+. ..+++|+.|+++++....   +.++.+++|+.|++.++.++...
T Consensus       133 ~l~~N~-l~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~---l~l~~l~~L~~L~l~~N~l~~~~  207 (457)
T 3bz5_A          133 NCARNT-LTEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKLD  207 (457)
T ss_dssp             ECTTSC-CSCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEEECCSSCCCC---CCCTTCTTCCEEECCSSCCSCCC
T ss_pred             ECCCCc-cceeccccCCcCCEEECCCCC-cccccccccCCcCCEEECCCCccce---eccccCCCCCEEECcCCcCCeec
Confidence            777764 333456667778888887774 222222 256788888887554433   22677888888888887776631


Q ss_pred             HHHHHccCCCCCEEeecCcCCchhhhccCcccceEeccccc
Q 019031          301 FNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       301 ~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~  341 (347)
                          +..+++|+.|+++++.....-...+++|+.|+++++.
T Consensus       208 ----l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          208 ----LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             ----CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSC
T ss_pred             ----cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCc
Confidence                5667888888888874322113356788888887654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.24  E-value=4.5e-11  Score=108.17  Aligned_cols=173  Identities=14%  Similarity=0.034  Sum_probs=119.7

Q ss_pred             cCceEEEeeeecCCcccccccc-cccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L  218 (347)
                      .++++|+  +..+.-  ..++. .+..+++|++|+++++.+....  ...++++|++|+++++.++.-. ...+.++++|
T Consensus        52 ~~L~~L~--l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLD--LSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEE--CTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTC
T ss_pred             ccCcEEE--CCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccC
Confidence            4788888  544322  23333 4566899999999998765432  4678899999999999884221 2336789999


Q ss_pred             cEEEeeccCCCC--c-cccccCCCceEEEccccc--cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEee
Q 019031          219 EDLCFSNCWGLK--H-LCVSKASKLKIMEIRSFS--EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  292 (347)
Q Consensus       219 e~L~l~~c~~~~--~-~~~~~~~~L~~L~l~~~~--~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~  292 (347)
                      +.|++.++....  . ..+..+++|+.|++.++.  ..+ ......+++|++|+++++.........+..+++|+.|+++
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            999999885322  1 134567899999999874  222 1223367899999998665543333456778999999998


Q ss_pred             ccccCchHHHHHHccCCCCCEEeecCcC
Q 019031          293 SVYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      ++.+... ....+..+++|+.|+++++.
T Consensus       207 ~n~l~~~-~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          207 MKQHILL-LEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             CSCSTTH-HHHHHHHTTTEEEEEEESCB
T ss_pred             CCccccc-hhhhhhhcccccEEECCCCc
Confidence            8887542 23345568999999998873

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.23  E-value=5.5e-12  Score=111.83  Aligned_cols=193  Identities=16%  Similarity=0.056  Sum_probs=126.8

Q ss_pred             cCceEEEeeeecCCcccccccccc-cccccccEEEEeeeeccCC----CCcCCCCCcCEEEeeeeeeChHHHHHHHhcCC
Q 019031          142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQP----FDSIMLCSLKKLTLERVCLDEQMVQKLASECP  216 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~l~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp  216 (347)
                      .++++|+  +..+.  ...++... ..+++|++|+++++.+...    .....+++|++|+++++.+..  +..-+..++
T Consensus        28 ~~l~~L~--L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~  101 (306)
T 2z66_A           28 SSATRLE--LESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLE  101 (306)
T ss_dssp             TTCCEEE--CCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCT
T ss_pred             CCCCEEE--CCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCC
Confidence            4788888  54332  22455443 4578888888888775422    123467888888888886621  111155688


Q ss_pred             CccEEEeeccCCCCc---cccccCCCceEEEccccc-c-chhhhhhcCCCccEEEeeeeCCCC-CceeeccCCCCCcEEE
Q 019031          217 LLEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLD  290 (347)
Q Consensus       217 ~Le~L~l~~c~~~~~---~~~~~~~~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~  290 (347)
                      +|+.|++.++.....   ..+..+++|+.|+++++. . ........+++|++|.++++.... .....+..+++|+.|+
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            899998887743221   134567899999999886 1 112223367899999998544332 2334567889999999


Q ss_pred             eeccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031          291 LVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       291 L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~  341 (347)
                      ++++.++... ...+..+++|+.|+++++....   ......++|+.|+++++.
T Consensus       182 Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          182 LSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             CTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             CCCCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            9888877531 2345678999999999875322   123456899999998875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.23  E-value=1.5e-11  Score=109.27  Aligned_cols=205  Identities=17%  Similarity=0.118  Sum_probs=139.7

Q ss_pred             hHHHHHHHHHHHcCceEEEeeeecCCcccccccccc--cccccccEEEEeeeeccCCC------CcCCCCCcCEEEeeee
Q 019031          130 PIVDRWIRLAVENGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERV  201 (347)
Q Consensus       130 ~~~~~~i~~~~~~~l~~L~~~l~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~L~~~  201 (347)
                      ..+..........++++|+  +..+.. ....+..+  ...++|++|++++|.+....      ....+++|++|+|+++
T Consensus        79 ~~~~~~~~~~~~~~L~~L~--l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n  155 (310)
T 4glp_A           79 QLLVGALRVLAYSRLKELT--LEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA  155 (310)
T ss_dssp             HHHHHHHHHHHHSCCCEEE--EESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC
T ss_pred             HHHHHHHHhcccCceeEEE--eeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC
Confidence            3455555555567899999  654322 22334444  56789999999999876432      2246899999999999


Q ss_pred             eeChHHHHHHHhcCCCccEEEeeccCCCCc------cccccCCCceEEEccccc-cchhh----hhhcCCCccEEEeeee
Q 019031          202 CLDEQMVQKLASECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTLLFY  270 (347)
Q Consensus       202 ~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~------~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l~~~  270 (347)
                      .+.... ...+.++++|+.|++++|.....      ..+..+++|+.|++++|. ..+..    +...+++|++|+++++
T Consensus       156 ~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          156 HSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             SSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             Ccchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence            883222 12356899999999999974321      223467899999999986 22222    2236799999999965


Q ss_pred             CCCCCceeeccCC---CCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch-hhhccCcccceEecccccC
Q 019031          271 GARRPRVVEVARS---PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KIKISSNQLKNLLFRSCKY  342 (347)
Q Consensus       271 ~~~~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~L~~L~l~~c~~  342 (347)
                      ......+..+..+   ++|+.|+++++.++.  +...+  +++|+.|+++++.... ......++|+.|++++.+.
T Consensus       235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          235 SLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred             CCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCCcCCCCchhhhCCCccEEECcCCCC
Confidence            5544322223343   799999999988873  22211  4799999999985433 3345678999999987653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.22  E-value=6e-11  Score=110.96  Aligned_cols=109  Identities=15%  Similarity=0.084  Sum_probs=69.3

Q ss_pred             ccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCC
Q 019031          235 SKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE  312 (347)
Q Consensus       235 ~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~  312 (347)
                      ..+++|+.|+++++. ... ......+++|++|+++++.........+..+++|+.|+++++.++... ...+..+++|+
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~  374 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLGLPNLK  374 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCC
T ss_pred             ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhcccccccc
Confidence            346778888887775 111 112235678888888755443332334577888888888887776431 23456688888


Q ss_pred             EEeecCcCCch---hhhccCcccceEecccccCcc
Q 019031          313 DLFVTRCCLPG---KIKISSNQLKNLLFRSCKYLK  344 (347)
Q Consensus       313 ~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~l~  344 (347)
                      .|+++++....   .....+++|+.|+|++++.--
T Consensus       375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            88888874322   223456788888888766433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.22  E-value=8.4e-12  Score=120.13  Aligned_cols=174  Identities=16%  Similarity=0.064  Sum_probs=82.3

Q ss_pred             cccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHH-HHHHHhcCCCccEEEeeccCCCCc-cccccCCCceEEEc
Q 019031          168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQM-VQKLASECPLLEDLCFSNCWGLKH-LCVSKASKLKIMEI  245 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~i~~~cp~Le~L~l~~c~~~~~-~~~~~~~~L~~L~l  245 (347)
                      +++|+.|++.++.+........+++|++|+++++.++... ....+.++++|+.|++.+|..... ..+..+++|+.|++
T Consensus       324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l  403 (570)
T 2z63_A          324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF  403 (570)
T ss_dssp             CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred             ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEc
Confidence            3444555554444333222356777777777777652211 112245677777777776642110 01333455555555


Q ss_pred             cccc-cc--------------------------hhhhhhcCCCccEEEeeeeCCC-CCceeeccCCCCCcEEEeeccccC
Q 019031          246 RSFS-EE--------------------------IEIVEISVPSLQQLTLLFYGAR-RPRVVEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       246 ~~~~-~~--------------------------~~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~  297 (347)
                      .++. ..                          .......+++|+.|.++++... ...+..+..+++|+.|+++++.++
T Consensus       404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~  483 (570)
T 2z63_A          404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  483 (570)
T ss_dssp             TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence            5543 00                          1111123444444444422211 111223445566666666555554


Q ss_pred             chHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecccccC
Q 019031          298 DNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCKY  342 (347)
Q Consensus       298 ~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~  342 (347)
                      +. ....+..+++|+.|++++|....   .....+++|+.|++++++.
T Consensus       484 ~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          484 QL-SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             EE-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cC-ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence            32 12234456666666666653221   1223456677777766543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.22  E-value=8.4e-12  Score=121.13  Aligned_cols=174  Identities=16%  Similarity=0.065  Sum_probs=85.6

Q ss_pred             ccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChH-HHHHHHhcCCCccEEEeeccCCCCc-cccccCCCceEEE
Q 019031          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQ-MVQKLASECPLLEDLCFSNCWGLKH-LCVSKASKLKIME  244 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~i~~~cp~Le~L~l~~c~~~~~-~~~~~~~~L~~L~  244 (347)
                      .+++|++|++++|..........+++|++|+++++.+... .....+..+++|+.|++.+|..... ..+.++++|+.|+
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  405 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD  405 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence            4556666666665322222345677777777777766211 1122356678888888877642110 1223345555555


Q ss_pred             ccccc-cchh--hhhhcCCCccEEEeeeeCC------------------------CC-CceeeccCCCCCcEEEeecccc
Q 019031          245 IRSFS-EEIE--IVEISVPSLQQLTLLFYGA------------------------RR-PRVVEVARSPHLKKLDLVSVYF  296 (347)
Q Consensus       245 l~~~~-~~~~--~~~~~~p~L~~L~l~~~~~------------------------~~-~~~~~~~~~~~L~~L~L~~~~~  296 (347)
                      +.++. ....  .....+++|+.|+++++..                        .. .....++.+++|+.|+++++.+
T Consensus       406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  485 (606)
T 3vq2_A          406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL  485 (606)
T ss_dssp             CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence            55553 1111  1112344455555443222                        11 1122334556666666655555


Q ss_pred             CchHHHHHHccCCCCCEEeecCcCCchh---hhccCcccceEeccccc
Q 019031          297 ADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCK  341 (347)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~  341 (347)
                      +.. ....+..+++|+.|++++|.....   .....++|+.|+|+++.
T Consensus       486 ~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          486 EQI-SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             CEE-CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             Ccc-ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            432 122344566666666666533221   22344567777776654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=6.2e-12  Score=117.87  Aligned_cols=199  Identities=17%  Similarity=0.174  Sum_probs=136.9

Q ss_pred             HHcCceEEEeeeecCCcccc---cccccccccccccEEEEeeeeccCCC---CcCCCC----CcCEEEeeeeeeCh---H
Q 019031          140 VENGVRELDFENITDENTVY---TLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLC----SLKKLTLERVCLDE---Q  206 (347)
Q Consensus       140 ~~~~l~~L~~~l~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~l~~~~---~~~~~~----~L~~L~L~~~~~~~---~  206 (347)
                      ..++++.|+  +..+.....   .++..+..+++|++|+++++.+....   ....++    +|++|+|+++.+++   .
T Consensus        26 ~~~~L~~L~--L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           26 LLQQCQVVR--LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHTTCSEEE--EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCccEEE--ccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            347999999  655443322   44555666899999999998865421   123344    79999999999854   3


Q ss_pred             HHHHHHhcCCCccEEEeeccCCCCccc--------cccCCCceEEEccccc-c--c---hhhhhhcCCCccEEEeeeeCC
Q 019031          207 MVQKLASECPLLEDLCFSNCWGLKHLC--------VSKASKLKIMEIRSFS-E--E---IEIVEISVPSLQQLTLLFYGA  272 (347)
Q Consensus       207 ~l~~i~~~cp~Le~L~l~~c~~~~~~~--------~~~~~~L~~L~l~~~~-~--~---~~~~~~~~p~L~~L~l~~~~~  272 (347)
                      .+...+..+++|++|++.+|.. ....        ....++|++|++++|. .  .   +......+++|++|+++++..
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence            4566678899999999999863 2211        1124689999999986 1  1   122233679999999995544


Q ss_pred             CCCceeec-----cCCCCCcEEEeeccccCchH---HHHHHccCCCCCEEeecCcCCchh----h----hccCcccceEe
Q 019031          273 RRPRVVEV-----ARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK----I----KISSNQLKNLL  336 (347)
Q Consensus       273 ~~~~~~~~-----~~~~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~----~----~~~~~~L~~L~  336 (347)
                      .......+     ...++|+.|+++++.+++..   +...+..+++|+.|++++|.....    +    ....++|+.|+
T Consensus       183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence            22111111     23679999999999888754   455667899999999999853321    1    12468999999


Q ss_pred             ccccc
Q 019031          337 FRSCK  341 (347)
Q Consensus       337 l~~c~  341 (347)
                      +++|.
T Consensus       263 L~~n~  267 (461)
T 1z7x_W          263 IWECG  267 (461)
T ss_dssp             CTTSC
T ss_pred             CcCCC
Confidence            99984

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.22  E-value=5.1e-11  Score=98.61  Aligned_cols=144  Identities=19%  Similarity=0.204  Sum_probs=84.2

Q ss_pred             cccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEc
Q 019031          168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEI  245 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l  245 (347)
                      +++|++|+++++.+........+++|++|+++++.+..-  . .+..+++|+.|++.+|....  ...+..+++|+.|++
T Consensus        43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            466777777776655433455667777777777755221  1 25567777777777765322  223445677777777


Q ss_pred             cccc-cc-hhhhhhcCCCccEEEeeeeC-CCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          246 RSFS-EE-IEIVEISVPSLQQLTLLFYG-ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       246 ~~~~-~~-~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ++|. .. .......+++|++|+++++. ... .. .+..+++|+.|+++++.+++..   .+..+++|+.|+++++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence            7765 11 11222356677777776543 222 12 3566777777777776666522   3456677777777664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.22  E-value=1.3e-11  Score=119.81  Aligned_cols=184  Identities=14%  Similarity=-0.005  Sum_probs=124.1

Q ss_pred             cccccccccccEEEEeeeeccCC-CCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCC
Q 019031          162 PQAIFSANSVTNLRLVWCRLEQP-FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKAS  238 (347)
Q Consensus       162 ~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~  238 (347)
                      +..+..+++|++|++++|.+... .....+++|++|+++++.+........+..+++|+.|++.+|.....  -.+.+++
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  448 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT  448 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence            33444567777777777664432 24567888888888888773222212356788999999988864321  2345678


Q ss_pred             CceEEEccccc-cc--hhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEe
Q 019031          239 KLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF  315 (347)
Q Consensus       239 ~L~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~  315 (347)
                      +|+.|++++|. ..  .......+++|+.|+++++.........+..+++|+.|+++++.+++. ....+..+++|+.|+
T Consensus       449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLD  527 (606)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEE
Confidence            99999999986 11  222334779999999986655433334467899999999999888763 234567789999999


Q ss_pred             ecCcCCc--hhhhccCc-ccceEecccccCcccc
Q 019031          316 VTRCCLP--GKIKISSN-QLKNLLFRSCKYLKLC  346 (347)
Q Consensus       316 l~~c~~~--~~~~~~~~-~L~~L~l~~c~~l~~~  346 (347)
                      +++|...  .......+ +|+.|++++++..-.|
T Consensus       528 l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             CTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             CCCCcCcccCHhHhhhcccCcEEEccCCCcccCC
Confidence            9998532  11123444 6999999887654333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.21  E-value=3.7e-11  Score=116.20  Aligned_cols=166  Identities=16%  Similarity=0.054  Sum_probs=123.1

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .+++.|+  +..+..  ..++ .+..+++|+.|+|++|.+........+++|+.|+|+++.+..-  . -+..+++|+.|
T Consensus        43 ~~L~~L~--l~~n~i--~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L  114 (605)
T 1m9s_A           43 NSIDQII--ANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSL  114 (605)
T ss_dssp             TTCCCCB--CTTCCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEE
T ss_pred             CCCCEEE--CcCCCC--CCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEE
Confidence            6788888  543322  2233 4667899999999999876554577899999999999988432  1 26789999999


Q ss_pred             EeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  300 (347)
                      +|.+|....--.+..+++|+.|.+++|. ..+ .....+++|+.|+++.+.......  +..+++|+.|+|+++.+.+. 
T Consensus       115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-  190 (605)
T 1m9s_A          115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-  190 (605)
T ss_dssp             ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred             EecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence            9998865433345678999999999986 222 223478999999998665544333  68899999999999888763 


Q ss_pred             HHHHHccCCCCCEEeecCcCC
Q 019031          301 FNHLISKFPSLEDLFVTRCCL  321 (347)
Q Consensus       301 ~~~~~~~~~~L~~L~l~~c~~  321 (347)
                        ..+..+++|+.|++++|+.
T Consensus       191 --~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          191 --RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             --GGGTTCTTCSEEECCSEEE
T ss_pred             --hHHccCCCCCEEEccCCcC
Confidence              2367799999999998743

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.21  E-value=2.8e-11  Score=113.28  Aligned_cols=192  Identities=15%  Similarity=0.077  Sum_probs=135.0

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le  219 (347)
                      .+++.|+  +..+... ...+..+..+++|++|+|+++.+....  ...++++|++|+|+++.+..-. ...+.++++|+
T Consensus        75 ~~l~~L~--L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLN--LMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLR  150 (452)
T ss_dssp             TTCSEEE--CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCC
T ss_pred             CCccEEE--CcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCC
Confidence            4788888  5443221 122344556899999999998765332  4678999999999999874211 12356799999


Q ss_pred             EEEeeccCCCC--ccccccCCCceEEEccccccchhhh----hhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031          220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (347)
Q Consensus       220 ~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~  293 (347)
                      .|++.++....  ...+..+++|+.|++.+|. .+..+    ...+++|++|+++++.....  ..+..+++|+.|++++
T Consensus       151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSG  227 (452)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTT
T ss_pred             EEECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcC
Confidence            99999886421  1234567999999999876 33332    23679999999986555432  2457889999999999


Q ss_pred             cccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031          294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~  341 (347)
                      +.++.. ....+..+++|+.|+++++....   .....+++|+.|+|+++.
T Consensus       228 N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          228 NHFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             SCCSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcCccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence            888753 23456789999999999985332   223456899999998763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.21  E-value=1.1e-10  Score=102.81  Aligned_cols=164  Identities=16%  Similarity=0.123  Sum_probs=79.8

Q ss_pred             cccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccc
Q 019031          168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  247 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~  247 (347)
                      +++|+.|++++|.+........+++|++|+++++.+.+-.  . +..+++|+.|++.+|....--.+..+++|+.|++++
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCC
Confidence            4556666666655443333445566666666666552211  1 455666666666655432222234455666666665


Q ss_pred             cc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch-hh
Q 019031          248 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KI  325 (347)
Q Consensus       248 ~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~  325 (347)
                      |. ..+. ....+++|+.|+++.+.....  ..+..+++|+.|+++++.+++...   +..+++|+.|+++++..-. ..
T Consensus       122 n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~~  195 (291)
T 1h6t_A          122 NGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA  195 (291)
T ss_dssp             SCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG
T ss_pred             CcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCChh
Confidence            54 1111 112455666666654333222  234455666666665555544211   4455666666666552111 11


Q ss_pred             hccCcccceEecccc
Q 019031          326 KISSNQLKNLLFRSC  340 (347)
Q Consensus       326 ~~~~~~L~~L~l~~c  340 (347)
                      ....++|+.|+++++
T Consensus       196 l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          196 LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             GTTCTTCSEEEEEEE
T ss_pred             hccCCCCCEEECcCC
Confidence            224455566655544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.21  E-value=3.7e-11  Score=112.41  Aligned_cols=83  Identities=14%  Similarity=0.006  Sum_probs=54.0

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCC--C--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCC
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--F--DSIMLCSLKKLTLERVCLDEQMVQKLASECPL  217 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~  217 (347)
                      .++++|+  +..+.. ....+..+..+++|++|++++|.+...  .  ....+++|++|+|+++.+.......++.++++
T Consensus        79 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           79 SSLIILK--LDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             TTCCEEE--CTTCTT-CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             ccCCEEe--CCCCcc-CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            5788888  543221 122344555678888888888876531  1  25678888888888887743322334677888


Q ss_pred             ccEEEeeccC
Q 019031          218 LEDLCFSNCW  227 (347)
Q Consensus       218 Le~L~l~~c~  227 (347)
                      |+.|++.+|.
T Consensus       156 L~~L~L~~n~  165 (455)
T 3v47_A          156 FHVLDLTFNK  165 (455)
T ss_dssp             CCEEECTTCC
T ss_pred             ccEEeCCCCc
Confidence            8888888774

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.20  E-value=2.9e-11  Score=114.25  Aligned_cols=168  Identities=15%  Similarity=0.060  Sum_probs=105.1

Q ss_pred             ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceE
Q 019031          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKI  242 (347)
Q Consensus       165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~  242 (347)
                      +..+++|++|+|++|.+...   ...++|++|+++++.++...    ...+++|+.|++.+|....  ...+..+++|+.
T Consensus        76 l~~l~~L~~L~Ls~N~l~~l---~~~~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  148 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQEL---LVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY  148 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEEE---EECTTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEE
T ss_pred             cccCCCCCEEEecCCcCCCC---CCCCCcCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCE
Confidence            44566677777777665532   22367777777776663221    1246777888887775322  223445688888


Q ss_pred             EEccccc-cc--hhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          243 MEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       243 L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      |+++++. ..  ...+...+++|+.|+++++.....  .....+++|+.|+++++.+++.  ...+..+++|+.|+++++
T Consensus       149 L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS
T ss_pred             EECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCC
Confidence            8888876 11  122223578888888885544322  2234588999999988887752  222567889999999987


Q ss_pred             CCch--hhhccCcccceEecccccCc
Q 019031          320 CLPG--KIKISSNQLKNLLFRSCKYL  343 (347)
Q Consensus       320 ~~~~--~~~~~~~~L~~L~l~~c~~l  343 (347)
                      ....  .....+++|+.|++.++...
T Consensus       225 ~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          225 KLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             cCcccchhhccCCCCCEEEcCCCCCc
Confidence            4322  22335578999999887643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.20  E-value=3e-11  Score=110.83  Aligned_cols=10  Identities=30%  Similarity=0.494  Sum_probs=4.6

Q ss_pred             CCCccEEEee
Q 019031          259 VPSLQQLTLL  268 (347)
Q Consensus       259 ~p~L~~L~l~  268 (347)
                      +|+|++|+++
T Consensus       247 l~~L~~L~Ls  256 (390)
T 3o6n_A          247 YPGLVEVDLS  256 (390)
T ss_dssp             CTTCSEEECC
T ss_pred             CCCccEEECC
Confidence            3444444444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.20  E-value=2.3e-11  Score=114.02  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=35.4

Q ss_pred             CCCCCcEEEeeccccCchH---HHHHHccCCCCCEEeecCcCCchh----h----hccCcccceEeccccc
Q 019031          282 RSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK----I----KISSNQLKNLLFRSCK  341 (347)
Q Consensus       282 ~~~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~----~----~~~~~~L~~L~l~~c~  341 (347)
                      .+++|+.|+++++.+++..   +...+..+++|++|+++++.....    +    ....++|+.|++++|.
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence            4567777777666666544   334445567777777777643211    1    1123577777777775

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.19  E-value=4.4e-11  Score=119.39  Aligned_cols=154  Identities=15%  Similarity=0.002  Sum_probs=100.8

Q ss_pred             cccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031          166 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (347)
Q Consensus       166 ~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~  244 (347)
                      ..+++|++|++++|.+.... ....+++|++|+++++.+.+... ..+..+++|+.|++.+|..........+++|+.|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            45677888888887755322 35678888888888887753332 34677888888888888653333333567888888


Q ss_pred             ccccc-c-chhhhh-hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031          245 IRSFS-E-EIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       245 l~~~~-~-~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      +.+|. . .+.... ..+++|++|+++++......+..++.+++|+.|++.++.+.+......+..+++|+.|++++|.
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            88875 1 111111 2248888888875444333334467788888888877776543333446678888888888773

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.19  E-value=3.4e-11  Score=110.36  Aligned_cols=198  Identities=16%  Similarity=0.119  Sum_probs=137.4

Q ss_pred             cCceEEEeeeecCCccc---ccccccccccccccEEEEeeeeccCCC------------CcCCCCCcCEEEeeeeeeChH
Q 019031          142 NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQPF------------DSIMLCSLKKLTLERVCLDEQ  206 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~l~~~~------------~~~~~~~L~~L~L~~~~~~~~  206 (347)
                      +++++|+  +..+....   ..+...+..+++|++|+|++|.+....            ....+++|++|+|+++.+++.
T Consensus        32 ~~L~~L~--L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           32 DSVKEIV--LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             SCCCEEE--CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCccEEE--CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            6899999  65432221   123334556899999999997543110            125789999999999999553


Q ss_pred             ---HHHHHHhcCCCccEEEeeccCCCCc--cc----cccC---------CCceEEEccccc---cchhh---hhhcCCCc
Q 019031          207 ---MVQKLASECPLLEDLCFSNCWGLKH--LC----VSKA---------SKLKIMEIRSFS---EEIEI---VEISVPSL  262 (347)
Q Consensus       207 ---~l~~i~~~cp~Le~L~l~~c~~~~~--~~----~~~~---------~~L~~L~l~~~~---~~~~~---~~~~~p~L  262 (347)
                         .+...+..+++|+.|++.+|.....  ..    +..+         ++|+.|.+++|.   ..+..   ....+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               3555578899999999999964211  11    1223         799999999986   12222   22378899


Q ss_pred             cEEEeeeeCCCCC----cee-eccCCCCCcEEEeeccccCch---HHHHHHccCCCCCEEeecCcCCchh----hhc---
Q 019031          263 QQLTLLFYGARRP----RVV-EVARSPHLKKLDLVSVYFADN---EFNHLISKFPSLEDLFVTRCCLPGK----IKI---  327 (347)
Q Consensus       263 ~~L~l~~~~~~~~----~~~-~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~~~~----~~~---  327 (347)
                      ++|.++++.....    ... .+..+++|+.|+|+++.+++.   .+...+..+++|+.|++++|.....    +..   
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            9999996655321    111 456889999999999988753   3455667899999999999864332    111   


Q ss_pred             --cCcccceEeccccc
Q 019031          328 --SSNQLKNLLFRSCK  341 (347)
Q Consensus       328 --~~~~L~~L~l~~c~  341 (347)
                        .+++|+.|+|++|.
T Consensus       270 ~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNE  285 (386)
T ss_dssp             TCSSCCCCEEECCSSC
T ss_pred             hccCCCeEEEECcCCc
Confidence              27899999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.19  E-value=3.2e-11  Score=112.50  Aligned_cols=192  Identities=13%  Similarity=0.067  Sum_probs=132.7

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le  219 (347)
                      .+++.|+  +..+.... ..+..+..+++|++|+|++|.+....  ...++++|++|+|+++.++.-. ...+..+++|+
T Consensus        64 ~~l~~L~--L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  139 (440)
T 3zyj_A           64 TNTRLLN--LHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLK  139 (440)
T ss_dssp             TTCSEEE--CCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCC
T ss_pred             CCCcEEE--ccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCc
Confidence            4678888  54432211 12234556899999999998765332  4577899999999999873211 12356789999


Q ss_pred             EEEeeccCCCC--ccccccCCCceEEEccccccchhh----hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031          220 DLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEI----VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (347)
Q Consensus       220 ~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~  293 (347)
                      .|++.++....  ...+..+++|+.|++.++. .+..    ....+++|++|+++++......  .+..+++|+.|++++
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSG  216 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTT
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCC
Confidence            99999886321  2234567899999999876 2222    2236899999999865553221  357889999999998


Q ss_pred             cccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031          294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~  341 (347)
                      +.++.. ....+..+++|+.|+++++....   .....+++|+.|+|+++.
T Consensus       217 N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          217 NHLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             SCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred             CccCcc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence            887753 23456789999999999874332   223466899999998763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.19  E-value=8.6e-11  Score=107.77  Aligned_cols=106  Identities=18%  Similarity=0.159  Sum_probs=73.9

Q ss_pred             cccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCC
Q 019031          234 VSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  311 (347)
Q Consensus       234 ~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L  311 (347)
                      +..+++|+.|+++++. ... ......+++|++|.++++... .....+..+++|+.|+++++.+..  +...+..+++|
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L  320 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRL  320 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTC
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCccee--cCccccccCcC
Confidence            3456788888888875 111 223346899999999855442 233344678999999999888764  22234568999


Q ss_pred             CEEeecCcCCchhhhccCcccceEecccccC
Q 019031          312 EDLFVTRCCLPGKIKISSNQLKNLLFRSCKY  342 (347)
Q Consensus       312 ~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~  342 (347)
                      +.|++++|.....-...+++|+.|++.+++.
T Consensus       321 ~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          321 ENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             SEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred             CEEECCCCccceeCchhhccCCEEEcCCCCc
Confidence            9999999864433345678999999987653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.19  E-value=4.5e-11  Score=106.56  Aligned_cols=186  Identities=14%  Similarity=0.051  Sum_probs=117.0

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .+++.|+  +..+...  ..+. +..+++|++|++++|.+...   ...++|++|+++++.+....    ...+++|+.|
T Consensus        58 ~~L~~L~--Ls~n~l~--~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L  125 (317)
T 3o53_A           58 TKLELLN--LSSNVLY--ETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHAANNNISRVS----CSRGQGKKNI  125 (317)
T ss_dssp             TTCCEEE--CTTSCCE--EEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEECCSSCCSEEE----ECCCSSCEEE
T ss_pred             CcCCEEE--CCCCcCC--cchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEECCCCccCCcC----ccccCCCCEE
Confidence            5677777  4332211  1111 44567777777777765532   23477777777777663221    2346778888


Q ss_pred             EeeccCCCC--ccccccCCCceEEEccccc-cc--hhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031          222 CFSNCWGLK--HLCVSKASKLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (347)
Q Consensus       222 ~l~~c~~~~--~~~~~~~~~L~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (347)
                      ++.++....  ...+..+++|+.|+++++. ..  ...+...+++|+.|+++++.....  .....+++|+.|+++++.+
T Consensus       126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcC
Confidence            888775322  2234456889999999876 11  122223578999999985544322  2223588999999998888


Q ss_pred             CchHHHHHHccCCCCCEEeecCcCCc--hhhhccCcccceEecccccCc
Q 019031          297 ADNEFNHLISKFPSLEDLFVTRCCLP--GKIKISSNQLKNLLFRSCKYL  343 (347)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~l~~c~~~--~~~~~~~~~L~~L~l~~c~~l  343 (347)
                      +.-  ...+..+++|+.|+++++...  .......++|+.|++++++..
T Consensus       204 ~~l--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          204 AFM--GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CEE--CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             Ccc--hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            752  222567899999999987432  222345679999999887643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.18  E-value=5.3e-11  Score=115.09  Aligned_cols=127  Identities=20%  Similarity=0.122  Sum_probs=62.6

Q ss_pred             ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (347)
Q Consensus       165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~  244 (347)
                      +..+++|+.|+|++|.+........+++|+.|+|+++.+..-  . -+..+++|+.|+|.+|.....-.+..+++|+.|+
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~  159 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS  159 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEE
T ss_pred             hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEECCCCccCCchhhcccCCCCEEE
Confidence            344556666666665554433445556666666666555221  1 1445566666666555432222234455666666


Q ss_pred             ccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031          245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       245 l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (347)
                      +++|. ..+.. ...+++|+.|+++.+.....  ..+..+++|+.|+|.++.+.
T Consensus       160 Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          160 LEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             CcCCcCCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence            66554 11111 22455666666654333221  12455566666666555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.18  E-value=1.5e-10  Score=108.52  Aligned_cols=158  Identities=16%  Similarity=0.090  Sum_probs=98.7

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++++|+  +..+.-..  ++  +..+++|++|+++++.+... ....+++|++|+++++.++.-  .  +..+++|+.|
T Consensus        85 ~~L~~L~--Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L  153 (457)
T 3bz5_A           85 TNLTYLA--CDSNKLTN--LD--VTPLTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEI--D--VSHNTQLTEL  153 (457)
T ss_dssp             TTCSEEE--CCSSCCSC--CC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEE
T ss_pred             CCCCEEE--CcCCCCce--ee--cCCCCcCCEEECCCCcCCee-cCCCCCcCCEEECCCCcccee--c--cccCCcCCEE
Confidence            5788888  54432222  22  45678889999888877654 367788888888888877432  1  5678888888


Q ss_pred             EeeccCCCCccccccCCCceEEEccccccchhhhh-hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchH
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  300 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  300 (347)
                      ++.+|.....+.+..+++|+.|+++++.  +..+. ..+++|+.|.++.+.....   .++.+++|+.|+++++.+++- 
T Consensus       154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-  227 (457)
T 3bz5_A          154 DCHLNKKITKLDVTPQTQLTTLDCSFNK--ITELDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-  227 (457)
T ss_dssp             ECTTCSCCCCCCCTTCTTCCEEECCSSC--CCCCCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-
T ss_pred             ECCCCCcccccccccCCcCCEEECCCCc--cceeccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-
Confidence            8888866665566666777777777764  22222 2456666666664333221   345566666666665555541 


Q ss_pred             HHHHHccCCCCCEEeecCc
Q 019031          301 FNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       301 ~~~~~~~~~~L~~L~l~~c  319 (347)
                       .  +..+++|+.|+++++
T Consensus       228 -p--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          228 -D--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             -C--CTTCTTCSEEECCSS
T ss_pred             -C--ccccCCCCEEEeeCC
Confidence             1  344556666665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.17  E-value=3.7e-11  Score=116.58  Aligned_cols=153  Identities=14%  Similarity=0.055  Sum_probs=73.5

Q ss_pred             CCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccc-cc--hh--hhhhcCCC
Q 019031          189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS-EE--IE--IVEISVPS  261 (347)
Q Consensus       189 ~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~-~~--~~--~~~~~~p~  261 (347)
                      .+++|++|+++++.+........+.++++|+.|++.+|....  ...+..+++|+.|+++++. ..  +.  .....+++
T Consensus       398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~  477 (606)
T 3t6q_A          398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR  477 (606)
T ss_dssp             TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred             CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence            344455555544444211111223344555555555443211  1112335566666666554 00  00  11224566


Q ss_pred             ccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecc
Q 019031          262 LQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFR  338 (347)
Q Consensus       262 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~  338 (347)
                      |+.|+++++.........+..+++|+.|+++++.+++.. ...+..+++| .|+++++....   ......++|+.|+++
T Consensus       478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  555 (606)
T 3t6q_A          478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS-IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR  555 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG-GGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred             ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCC-hhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence            666666644332222223456667777777666665432 2344556666 66666663322   112345677888887


Q ss_pred             cccCc
Q 019031          339 SCKYL  343 (347)
Q Consensus       339 ~c~~l  343 (347)
                      +++..
T Consensus       556 ~N~~~  560 (606)
T 3t6q_A          556 QNPLD  560 (606)
T ss_dssp             TCCEE
T ss_pred             CCCcc
Confidence            76643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.17  E-value=1.6e-11  Score=109.29  Aligned_cols=192  Identities=19%  Similarity=0.102  Sum_probs=97.9

Q ss_pred             cCceEEEeeeecCCcccccccccc--cccccccEEEEeeeeccCCC-CcCC-----CCCcCEEEeeeeeeChHHHHHHHh
Q 019031          142 NGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF-DSIM-----LCSLKKLTLERVCLDEQMVQKLAS  213 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~l~~~~-~~~~-----~~~L~~L~L~~~~~~~~~l~~i~~  213 (347)
                      .++++|+  +..+.- ...+|..+  ..+++|++|+++++.+...+ ....     .++|++|+|+++.+..... ..+.
T Consensus        95 ~~L~~L~--L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~  170 (312)
T 1wwl_A           95 SGLQELT--LENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVR  170 (312)
T ss_dssp             SCCCEEE--EEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCC
T ss_pred             CCccEEE--ccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhc
Confidence            5666666  432211 11233333  34566777777776654322 1112     2667777777666622111 1244


Q ss_pred             cCCCccEEEeeccCCCCc------cccccCCCceEEEccccc-cchhhh----hhcCCCccEEEeeeeCCCCCce-eecc
Q 019031          214 ECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFS-EEIEIV----EISVPSLQQLTLLFYGARRPRV-VEVA  281 (347)
Q Consensus       214 ~cp~Le~L~l~~c~~~~~------~~~~~~~~L~~L~l~~~~-~~~~~~----~~~~p~L~~L~l~~~~~~~~~~-~~~~  281 (347)
                      .+++|+.|++.++.....      +....+++|+.|+++++. ..+..+    ...+++|+.|+++.+....... ..+.
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            567777777776653221      111445677777777665 111111    1245677777776444333221 2234


Q ss_pred             CCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch-hhhccCcccceEeccccc
Q 019031          282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       282 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~~~~~~~L~~L~l~~c~  341 (347)
                      .+++|+.|+++++.++.  +...+  .++|+.|+++++.... ......++|+.|++.+.+
T Consensus       251 ~l~~L~~L~Ls~N~l~~--ip~~~--~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLKQ--VPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCTTCCEEECTTSCCSS--CCSSC--CSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCT
T ss_pred             hcCCCCEEECCCCccCh--hhhhc--cCCceEEECCCCCCCCChhHhhCCCCCEEeccCCC
Confidence            45677777777666652  22111  1577777777663211 113345677777776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.16  E-value=8e-11  Score=110.90  Aligned_cols=174  Identities=17%  Similarity=0.098  Sum_probs=102.6

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le  219 (347)
                      .++++|+  +..+... ...+..+..+++|++|++++|.+....  ....+++|+.|+|.++.+.... ...+..+++|+
T Consensus       128 ~~L~~L~--l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~  203 (477)
T 2id5_A          128 YNLKSLE--VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR-DYSFKRLYRLK  203 (477)
T ss_dssp             TTCCEEE--ECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC-TTCSCSCTTCC
T ss_pred             ccCCEEE--CCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC-hhhcccCcccc
Confidence            4667776  4332111 111223344566777777766654332  2345666666666665542111 01134455555


Q ss_pred             EEEeeccCC-----------------------CCcc---ccccCCCceEEEccccc-cchh-hhhhcCCCccEEEeeeeC
Q 019031          220 DLCFSNCWG-----------------------LKHL---CVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYG  271 (347)
Q Consensus       220 ~L~l~~c~~-----------------------~~~~---~~~~~~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~  271 (347)
                      .|++.+|..                       +..+   .+..+++|+.|+++++. ..+. .....+++|+.|.++++.
T Consensus       204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (477)
T 2id5_A          204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ  283 (477)
T ss_dssp             EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred             eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence            555555432                       1111   23467899999999885 1221 122467999999999655


Q ss_pred             CCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031          272 ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      ........+..+++|+.|+++++.++.. ....+..+++|+.|++++++
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          284 LAVVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CSEECTTTBTTCTTCCEEECCSSCCSCC-CGGGBSCGGGCCEEECCSSC
T ss_pred             cceECHHHhcCcccCCEEECCCCcCcee-CHhHcCCCcccCEEEccCCC
Confidence            5433334567899999999999887652 22345678999999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.16  E-value=6.7e-11  Score=114.70  Aligned_cols=36  Identities=19%  Similarity=-0.038  Sum_probs=15.1

Q ss_pred             cccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeee
Q 019031          168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL  203 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~  203 (347)
                      +++|++|+|++|.+...+  ....+++|++|+|+++.+
T Consensus       122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B          122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            444444444444433221  123444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.15  E-value=9.5e-11  Score=104.97  Aligned_cols=170  Identities=12%  Similarity=0.088  Sum_probs=111.0

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeCh-HHHHHHHhcCCCc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDE-QMVQKLASECPLL  218 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~-~~l~~i~~~cp~L  218 (347)
                      .++++|+  +..+.  ...++..++  ++|++|+++++.+....  ....+++|++|+++++.+.. ......+.++++|
T Consensus       100 ~~L~~L~--Ls~n~--l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  173 (330)
T 1xku_A          100 VKLERLY--LSKNQ--LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  173 (330)
T ss_dssp             TTCCEEE--CCSSC--CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             CCCCEEE--CCCCc--CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence            5788888  54332  224444443  78999999998766443  35678999999999887742 2223346778999


Q ss_pred             cEEEeeccCCCCccccccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031          219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (347)
Q Consensus       219 e~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (347)
                      +.|++.++.. ..+.....++|+.|+++++. ... ......+++|++|+++++.........+..+++|+.|+++++.+
T Consensus       174 ~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          174 SYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             CEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             CEEECCCCcc-ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence            9999988753 33322223688888888875 111 12233678888888885444322222356778888888887776


Q ss_pred             CchHHHHHHccCCCCCEEeecCcC
Q 019031          297 ADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      +.  +...+..+++|+.|+++++.
T Consensus       253 ~~--lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          253 VK--VPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             SS--CCTTTTTCSSCCEEECCSSC
T ss_pred             cc--CChhhccCCCcCEEECCCCc
Confidence            63  33345667888888888763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.14  E-value=4e-11  Score=104.64  Aligned_cols=172  Identities=15%  Similarity=0.076  Sum_probs=84.2

Q ss_pred             ccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCc
Q 019031          165 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKL  240 (347)
Q Consensus       165 ~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L  240 (347)
                      +..+++|++|++++|.+....  ....+++|++|+|+++.+..... ..+.++++|+.|++.++....  ...+..+++|
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            344566777777766543221  34556677777777665522111 124556777777776654321  1234455677


Q ss_pred             eEEEccccc-cc--hhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCc----EEEeeccccCchHHHHHHccCCCCCE
Q 019031          241 KIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLK----KLDLVSVYFADNEFNHLISKFPSLED  313 (347)
Q Consensus       241 ~~L~l~~~~-~~--~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~~~~~~~~~~~~~~~L~~  313 (347)
                      +.|+++++. ..  +......+++|++|+++++.........+..+++|+    .|+++++.+....  ......++|+.
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~--~~~~~~~~L~~  204 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ--PGAFKEIRLKE  204 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC--TTSSCSCCEEE
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC--ccccCCCcccE
Confidence            777776664 11  122233556677777764433221111222233333    5555555544311  11112235666


Q ss_pred             EeecCcCCch---hhhccCcccceEeccc
Q 019031          314 LFVTRCCLPG---KIKISSNQLKNLLFRS  339 (347)
Q Consensus       314 L~l~~c~~~~---~~~~~~~~L~~L~l~~  339 (347)
                      |+++++....   .+....++|+.|++++
T Consensus       205 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          205 LALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             EECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             EECCCCceeecCHhHhcccccccEEEccC
Confidence            6666653211   1223455666666663

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.14  E-value=2.2e-10  Score=111.09  Aligned_cols=189  Identities=19%  Similarity=0.107  Sum_probs=100.0

Q ss_pred             cCceEEEeeeecCCcccccccccc-cccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031          142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L  218 (347)
                      .+++.|+  +..+  ....+|..+ ..+++|++|+|++|.+....  ....+++|++|+|+++.++...    +..+|.|
T Consensus       123 ~~L~~L~--L~~n--~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L  194 (597)
T 3oja_B          123 PLLTVLV--LERN--DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSL  194 (597)
T ss_dssp             TTCCEEE--CCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTC
T ss_pred             CCCCEEE--eeCC--CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhh
Confidence            4677777  5433  222455544 45788888888888765432  3567888888888888774322    3445666


Q ss_pred             cEEEeeccCC----------------------------------------CCccccccCCCceEEEccccc-cch-hhhh
Q 019031          219 EDLCFSNCWG----------------------------------------LKHLCVSKASKLKIMEIRSFS-EEI-EIVE  256 (347)
Q Consensus       219 e~L~l~~c~~----------------------------------------~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~  256 (347)
                      +.|++.++..                                        .....+..+++|+.|+++++. ... ....
T Consensus       195 ~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             SEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             hhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHh
Confidence            6555554421                                        111112234555555555543 111 1112


Q ss_pred             hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhhhccCcccceEe
Q 019031          257 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLL  336 (347)
Q Consensus       257 ~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~  336 (347)
                      ..+++|+.|.++++.... ....+..+++|+.|+|+++.+..  +...+..+++|+.|++++|.....-...+++|+.|+
T Consensus       275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~  351 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT  351 (597)
T ss_dssp             TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEE
T ss_pred             cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEE
Confidence            244555555555332211 22223446666666666665542  222234456667777766643332234556777777


Q ss_pred             ccccc
Q 019031          337 FRSCK  341 (347)
Q Consensus       337 l~~c~  341 (347)
                      |++++
T Consensus       352 l~~N~  356 (597)
T 3oja_B          352 LSHND  356 (597)
T ss_dssp             CCSSC
T ss_pred             eeCCC
Confidence            76654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.14  E-value=1.3e-10  Score=96.19  Aligned_cols=148  Identities=17%  Similarity=0.128  Sum_probs=96.8

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++++|+  +..+...  .++ .+..+++|++|++++|.+........+++|++|+++++.++...... +..+++|+.|
T Consensus        44 ~~L~~L~--l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L  117 (197)
T 4ezg_A           44 NSLTYIT--LANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL  117 (197)
T ss_dssp             HTCCEEE--EESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred             CCccEEe--ccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence            4777777  5433222  333 45567888888888886655445667888888888888775433333 5678888888


Q ss_pred             EeeccCCCC--ccccccCCCceEEEccccccchhh--hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031          222 CFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEI--VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       222 ~l~~c~~~~--~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (347)
                      ++.+|....  .-.+..+++|+.|++++|. .+..  ....+|+|+.|+++++......  .+..+++|+.|++.++.+.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-~i~~~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCT-BCCCCGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCC-CccccHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            888875433  1234567888888888874 1222  2346788899988865543322  5677899999999888765


Q ss_pred             c
Q 019031          298 D  298 (347)
Q Consensus       298 ~  298 (347)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.13  E-value=3.2e-10  Score=108.66  Aligned_cols=191  Identities=17%  Similarity=0.132  Sum_probs=132.7

Q ss_pred             cCceEEEeeeecCCccccccccccc-ccccccEEEEeeeeccCC-----CCcCCCCCcCEEEeeeeeeChH-HHHHHHhc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQP-----FDSIMLCSLKKLTLERVCLDEQ-MVQKLASE  214 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~-----~~~~~~~~L~~L~L~~~~~~~~-~l~~i~~~  214 (347)
                      .+++.|+  +..+.  ...+|..++ .+++|++|++++|.+...     .....+++|++|+++++.++.- .....+..
T Consensus       310 ~~L~~L~--l~~n~--l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  385 (549)
T 2z81_A          310 EKVKRIT--VENSK--VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT  385 (549)
T ss_dssp             TTCCEEE--EESSC--CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred             ccceEEE--eccCc--cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence            4677777  44322  235565554 478999999999886531     1356789999999999988433 23455788


Q ss_pred             CCCccEEEeeccCCCCccc--cccCCCceEEEccccccchhhhhh-cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEe
Q 019031          215 CPLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  291 (347)
Q Consensus       215 cp~Le~L~l~~c~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L  291 (347)
                      +++|+.|++++|.. ..+.  +..+++|+.|++++|.  +..+.. ..++|+.|+++.+.....    ...+++|+.|++
T Consensus       386 l~~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~--l~~l~~~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~L  458 (549)
T 2z81_A          386 LKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTG--IRVVKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYI  458 (549)
T ss_dssp             CTTCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSC--CSCCCTTSCTTCSEEECCSSCCSCC----CCCCTTCCEEEC
T ss_pred             CCCCCEEECCCCCC-ccCChhhcccccccEEECCCCC--cccccchhcCCceEEECCCCChhhh----cccCChhcEEEC
Confidence            99999999998853 3322  3356899999999985  333332 236899999986544331    257899999999


Q ss_pred             eccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEecccccCcccc
Q 019031          292 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCKYLKLC  346 (347)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~~l~~~  346 (347)
                      +++.++.  +.. ...+++|+.|+++++....   .....+++|+.|++++++..-.|
T Consensus       459 s~N~l~~--ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          459 SRNKLKT--LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CSSCCSS--CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred             CCCccCc--CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence            9888763  333 2468999999999984332   22346789999999888765443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.13  E-value=3.4e-11  Score=113.78  Aligned_cols=187  Identities=20%  Similarity=0.128  Sum_probs=132.5

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      ++++.|+  +..+... ...+..+..+++|++|+|++|.+........+++|++|+|+++.++.      +...++|+.|
T Consensus        34 ~~L~~L~--Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L  104 (487)
T 3oja_A           34 WNVKELD--LSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL  104 (487)
T ss_dssp             GGCCEEE--CCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred             CCccEEE--eeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence            4799999  6543222 12234556789999999999987643347789999999999998842      2245999999


Q ss_pred             EeeccCCCCccccccCCCceEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeec-cCCCCCcEEEeeccccCc
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEV-ARSPHLKKLDLVSVYFAD  298 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~  298 (347)
                      ++.+|. +..+....+++|+.|+++++. ..+.. ....+++|+.|+++++.........+ ..+++|+.|+++++.+++
T Consensus       105 ~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          105 HAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             ECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             ECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            999986 444444557899999999986 22222 22367999999998655543222233 368999999999998876


Q ss_pred             hHHHHHHccCCCCCEEeecCcCCch--hhhccCcccceEeccccc
Q 019031          299 NEFNHLISKFPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       299 ~~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~L~~L~l~~c~  341 (347)
                      .  . ....+++|+.|+++++....  ......++|+.|+++++.
T Consensus       184 ~--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          184 V--K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             E--E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             c--c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence            3  1 12358999999999984322  223466899999998864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.12  E-value=1.1e-10  Score=114.98  Aligned_cols=132  Identities=17%  Similarity=0.072  Sum_probs=70.0

Q ss_pred             HhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccccchhhh------------hhcCCCccEEEeeeeCCCCCce
Q 019031          212 ASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV------------EISVPSLQQLTLLFYGARRPRV  277 (347)
Q Consensus       212 ~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~------------~~~~p~L~~L~l~~~~~~~~~~  277 (347)
                      +.++++|+.|++.+|....  ...+.++++|+.|+++++.  +..+            ...+++|+.|+++++.......
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN--LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC--ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence            3445555555555543211  1113345666666666664  1111            1245667777776443332111


Q ss_pred             eeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchh---hhc-cCcccceEecccccCcccc
Q 019031          278 VEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKI-SSNQLKNLLFRSCKYLKLC  346 (347)
Q Consensus       278 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~-~~~~L~~L~l~~c~~l~~~  346 (347)
                      ..++.+++|+.|+++++.++.- ....+..+++|+.|+++++.....   ... .+++|+.|++++++..-.|
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             HHcccccCcceeECCCCCCCcC-CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence            2346677777777777666531 123345677788888877632221   111 4567888888766554433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.12  E-value=1.5e-10  Score=100.73  Aligned_cols=170  Identities=18%  Similarity=0.090  Sum_probs=88.8

Q ss_pred             ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEE
Q 019031          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIM  243 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L  243 (347)
                      ++|++|+++++.+....  ....+++|++|+|+++.++.- ...++.++++|+.|++.++.. ..+   .+..+++|+.|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAEL  114 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEE
Confidence            45677777766654332  345666777777766655211 112245566777777766542 221   22345667777


Q ss_pred             Eccccc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCC
Q 019031          244 EIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL  321 (347)
Q Consensus       244 ~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  321 (347)
                      .+.++. ..+. .....+++|++|+++++.........+..+++|+.|++.++.++... ...+..+++|+.|+++++..
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCcC
Confidence            776664 1111 11235566777777644333222222455667777777666554321 12244566777777766532


Q ss_pred             ch---hhhccCcccceEeccccc
Q 019031          322 PG---KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       322 ~~---~~~~~~~~L~~L~l~~c~  341 (347)
                      ..   ......++|+.|++.+++
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          194 KRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCHHHhccccCCCEEEecCCC
Confidence            21   112345566677666544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.12  E-value=8e-11  Score=100.46  Aligned_cols=194  Identities=16%  Similarity=0.074  Sum_probs=114.3

Q ss_pred             CceEEEeeeecCCcccccccc-cccccccccEEEEeeee-ccCCC--CcCCCCCcCEEEeee-eeeChHHHHHHHhcCCC
Q 019031          143 GVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCR-LEQPF--DSIMLCSLKKLTLER-VCLDEQMVQKLASECPL  217 (347)
Q Consensus       143 ~l~~L~~~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-l~~~~--~~~~~~~L~~L~L~~-~~~~~~~l~~i~~~cp~  217 (347)
                      ++++|+  +....  ...++. .+..+++|++|+++++. +....  ...++++|++|++++ +.+..-. ...+.++++
T Consensus        32 ~l~~L~--l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~  106 (239)
T 2xwt_C           32 STQTLK--LIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPL  106 (239)
T ss_dssp             TCCEEE--EESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTT
T ss_pred             cccEEE--EeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCC
Confidence            677777  54322  223333 34457888888888885 53222  356788888888887 5553111 122557888


Q ss_pred             ccEEEeeccCCCCccccccCCCce---EEEcccc-c-cchhh-hhhcCCCcc-EEEeeeeCCCCCceeeccCCCCCcEEE
Q 019031          218 LEDLCFSNCWGLKHLCVSKASKLK---IMEIRSF-S-EEIEI-VEISVPSLQ-QLTLLFYGARRPRVVEVARSPHLKKLD  290 (347)
Q Consensus       218 Le~L~l~~c~~~~~~~~~~~~~L~---~L~l~~~-~-~~~~~-~~~~~p~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~  290 (347)
                      |+.|++.+|....--.+..+++|+   .|+++++ . ..+.. ....+++|+ .|+++++.........+.. ++|+.|+
T Consensus       107 L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             CCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred             CCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence            888888887532211234455666   8888887 3 22222 123578888 8888754442111112233 7888899


Q ss_pred             eeccc-cCchHHHHHHccC-CCCCEEeecCcCCchhhhccCcccceEecccccCc
Q 019031          291 LVSVY-FADNEFNHLISKF-PSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYL  343 (347)
Q Consensus       291 L~~~~-~~~~~~~~~~~~~-~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~l  343 (347)
                      +.++. ++.- ....+..+ ++|+.|+++++.....-...+++|+.|.+.++..|
T Consensus       186 L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          186 LNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTL  239 (239)
T ss_dssp             CTTCTTCCEE-CTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC---
T ss_pred             cCCCCCcccC-CHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCccCC
Confidence            88773 6531 12345667 88999999886433211225778999988877653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.11  E-value=3.4e-11  Score=107.07  Aligned_cols=174  Identities=18%  Similarity=0.118  Sum_probs=117.2

Q ss_pred             ccccccEEEEeeeeccCCC--Cc--CCCCCcCEEEeeeeeeChH--HHHHHHh-cCCCccEEEeeccCCCCc--cccccC
Q 019031          167 SANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQ--MVQKLAS-ECPLLEDLCFSNCWGLKH--LCVSKA  237 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~--~~--~~~~~L~~L~L~~~~~~~~--~l~~i~~-~cp~Le~L~l~~c~~~~~--~~~~~~  237 (347)
                      .+++|++|++++|.+....  ..  ..+++|++|+|+++.++..  .+..+.. ..++|+.|++.++.....  -.+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            5789999999999876422  22  7889999999999988432  2333211 138999999998864322  235567


Q ss_pred             CCceEEEccccc-cch----hhhh-hcCCCccEEEeeeeCCCCCce---eeccCCCCCcEEEeeccccCchHHHHHHccC
Q 019031          238 SKLKIMEIRSFS-EEI----EIVE-ISVPSLQQLTLLFYGARRPRV---VEVARSPHLKKLDLVSVYFADNEFNHLISKF  308 (347)
Q Consensus       238 ~~L~~L~l~~~~-~~~----~~~~-~~~p~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~  308 (347)
                      ++|+.|+++++. .+.    ..+. ..+++|++|+++++.......   ..+..+++|+.|+++++.+++......+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            899999999885 111    1111 467899999998655532111   1235679999999998888763311233457


Q ss_pred             CCCCEEeecCcCCchhhhc-cCcccceEeccccc
Q 019031          309 PSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCK  341 (347)
Q Consensus       309 ~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~  341 (347)
                      ++|+.|+++++... .+.. ..++|+.|+++++.
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~  285 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNR  285 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSC
T ss_pred             CCCCEEECCCCccC-hhhhhccCCceEEECCCCC
Confidence            89999999987533 3322 12689999998764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.11  E-value=3.4e-11  Score=107.38  Aligned_cols=198  Identities=19%  Similarity=0.113  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHH--cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHH
Q 019031          131 IVDRWIRLAVE--NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMV  208 (347)
Q Consensus       131 ~~~~~i~~~~~--~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l  208 (347)
                      .+...+.....  +++++|+  +..+... ...+..+..+++|++|++++|.+........+++|++|+++++.++.   
T Consensus        21 ~l~~~~~~~~~~~~~L~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~---   94 (317)
T 3o53_A           21 SLKQALASLRQSAWNVKELD--LSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE---   94 (317)
T ss_dssp             THHHHHHHHHTTGGGCSEEE--CTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE---
T ss_pred             chhhhHHHHhccCCCCCEEE--CcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc---
Confidence            45555544433  5899999  6543222 12233456689999999999887543346789999999999998742   


Q ss_pred             HHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceee-ccCCCC
Q 019031          209 QKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVE-VARSPH  285 (347)
Q Consensus       209 ~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~-~~~~~~  285 (347)
                         +..+++|+.|++.+|. +..+....+++|+.|+++++. ..+.. ....+++|+.|+++++......... ...+++
T Consensus        95 ---l~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  170 (317)
T 3o53_A           95 ---LLVGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (317)
T ss_dssp             ---EEECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             ---ccCCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence               2246999999999886 444455557899999999986 22222 2236799999999865543322222 246899


Q ss_pred             CcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch--hhhccCcccceEeccccc
Q 019031          286 LKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       286 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~L~~L~l~~c~  341 (347)
                      |+.|+++++.++..  . ....+++|+.|+++++....  ......++|+.|+++++.
T Consensus       171 L~~L~L~~N~l~~~--~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          171 LEHLNLQYNFIYDV--K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             CCEEECTTSCCCEE--E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             CCEEECCCCcCccc--c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc
Confidence            99999999888753  1 12248999999999984322  224466899999998874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.10  E-value=4.7e-10  Score=107.45  Aligned_cols=174  Identities=16%  Similarity=0.069  Sum_probs=112.4

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le  219 (347)
                      .++++|+  +..+.. ....+..+..+++|++|++++|.+....  ....+++|++|+|+++.+..... ..+.++++|+
T Consensus        26 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~  101 (549)
T 2z81_A           26 AAMKSLD--LSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLK  101 (549)
T ss_dssp             TTCCEEE--CCSSCC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCC
T ss_pred             CCccEEE--CcCCcc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCc
Confidence            4678888  544321 1222344566788999999988765332  45678899999999888743222 2357789999


Q ss_pred             EEEeeccCCCC-c--cccccCCCceEEEccccc--cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031          220 DLCFSNCWGLK-H--LCVSKASKLKIMEIRSFS--EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (347)
Q Consensus       220 ~L~l~~c~~~~-~--~~~~~~~~L~~L~l~~~~--~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~  293 (347)
                      .|++.+|.... .  -.+..+++|+.|+++++.  ..+. .....+++|++|+++++.........++.+++|++|++..
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            99998885422 1  234567889999998875  1222 1223678889998886555433334456778888888877


Q ss_pred             cccCchHHHHHHccCCCCCEEeecCcC
Q 019031          294 VYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      +..... ...++..+++|+.|+++++.
T Consensus       182 n~~~~~-~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          182 SESAFL-LEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             SBSTTH-HHHHHHSTTTBSEEEEESCB
T ss_pred             Cccccc-chhhHhhcccccEEEccCCc
Confidence            665432 22334567888888887763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.08  E-value=4.3e-10  Score=109.77  Aligned_cols=149  Identities=13%  Similarity=0.095  Sum_probs=86.7

Q ss_pred             CCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccc----------cCCCceEEEccccc-cchhhhhh
Q 019031          189 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS----------KASKLKIMEIRSFS-EEIEIVEI  257 (347)
Q Consensus       189 ~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~----------~~~~L~~L~l~~~~-~~~~~~~~  257 (347)
                      .+++|++|+|+++.++ .....++..+++|+.|++.+|... .+...          .+++|+.|+++++. ..+.....
T Consensus       431 ~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  508 (636)
T 4eco_A          431 KGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR  508 (636)
T ss_dssp             CCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred             cCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence            3456777777776663 111234456777777777776532 22211          11278888888775 22222222


Q ss_pred             --cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec------cccCchHHHHHHccCCCCCEEeecCcCCchhhhc-c
Q 019031          258 --SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS------VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-S  328 (347)
Q Consensus       258 --~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~  328 (347)
                        .+++|+.|+++++.... .+..+..+++|+.|++++      +.+... +...+..+++|+.|++++|.. ..+.. .
T Consensus       509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~  585 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDI-RKVNEKI  585 (636)
T ss_dssp             TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred             hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence              66788888887554443 444556778888888843      333322 233445678888888887754 33322 3


Q ss_pred             CcccceEecccccC
Q 019031          329 SNQLKNLLFRSCKY  342 (347)
Q Consensus       329 ~~~L~~L~l~~c~~  342 (347)
                      .++|+.|+|++++.
T Consensus       586 ~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          586 TPNISVLDIKDNPN  599 (636)
T ss_dssp             CTTCCEEECCSCTT
T ss_pred             hCcCCEEECcCCCC
Confidence            36788888877753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.08  E-value=2.7e-10  Score=109.57  Aligned_cols=127  Identities=17%  Similarity=0.118  Sum_probs=62.3

Q ss_pred             cCCCccEEEeeccCCCCc----cccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCc-eeeccCCCCCc
Q 019031          214 ECPLLEDLCFSNCWGLKH----LCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPR-VVEVARSPHLK  287 (347)
Q Consensus       214 ~cp~Le~L~l~~c~~~~~----~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~  287 (347)
                      .+|+|+.|++.+|.....    ..+.++++|+.|++++|. ..+......+++|++|+++++...... ...+..+++|+
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  424 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  424 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence            455555555554432111    112234555566555553 111111224556666666532221111 12245566777


Q ss_pred             EEEeeccccCchHHHHHHccCCCCCEEeecCcCCc----hhhhccCcccceEeccccc
Q 019031          288 KLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP----GKIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       288 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~----~~~~~~~~~L~~L~l~~c~  341 (347)
                      .|+++++.+... ....+..+++|+.|++++|...    ......+++|+.|++++|.
T Consensus       425 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          425 YLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             EEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             EEeCcCCccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            777766554432 2234456777777777776432    1223356778888777664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.07  E-value=1.9e-10  Score=101.12  Aligned_cols=145  Identities=19%  Similarity=0.156  Sum_probs=56.1

Q ss_pred             cccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc--ccccCCCceEEEc
Q 019031          170 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEI  245 (347)
Q Consensus       170 ~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l  245 (347)
                      +++.|+++++.+....  ....+++|++|+|+++.++.-..   ...+++|+.|++.++.. ..+  .+..+++|+.|.+
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEEC
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcC-CcCchhhccCCCCCEEEC
Confidence            4455555544432211  23344555555555444421100   13444555555544432 111  1123445555555


Q ss_pred             cccc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          246 RSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       246 ~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      +++. ..+. .....+++|+.|.++++.........+..+++|+.|+++++.++.- ....+..+++|+.|+++++
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCC
Confidence            5443 1111 1112344555555543322211111223445555555544444321 1122334455555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.07  E-value=1.7e-10  Score=112.70  Aligned_cols=133  Identities=10%  Similarity=0.024  Sum_probs=82.7

Q ss_pred             cccccc--ccccccEEEEeeeeccCC--CCcCCCCCcCEEEeeeee-eChHHHHHHHh------cCCCccEEEeeccCCC
Q 019031          161 LPQAIF--SANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVC-LDEQMVQKLAS------ECPLLEDLCFSNCWGL  229 (347)
Q Consensus       161 l~~~~~--~~~~L~~L~L~~~~l~~~--~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~------~cp~Le~L~l~~c~~~  229 (347)
                      +|..+.  .+++|++|++++|.+...  .....+++|++|+++++. +++..+..-+.      .+++|+.|++.+|...
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            788888  899999999999975432  256789999999999998 66523333233      3588999999888643


Q ss_pred             Ccc----ccccCCCceEEEccccc-c-chhhhhhcCCCccEEEeeeeCCCCCceeeccCCCC-CcEEEeecccc
Q 019031          230 KHL----CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPH-LKKLDLVSVYF  296 (347)
Q Consensus       230 ~~~----~~~~~~~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~  296 (347)
                       .+    .+..+++|+.|+++++. . .+. ....+++|+.|.++++... ..+..+..+++ |+.|+++++.+
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence             32    34567788888888775 1 222 1124456666666532221 11112233444 55555544443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.07  E-value=2.1e-10  Score=100.92  Aligned_cols=174  Identities=14%  Similarity=0.068  Sum_probs=121.3

Q ss_pred             ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (347)
Q Consensus       165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~  244 (347)
                      +..+++++.+++.++.+...+ ..-.++++.|+|+++.++.-.. ..+.++++|+.|++.++....-.....+++|+.|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip-~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~   83 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALP-PDLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD   83 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCC-SCCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             ccccCCccEEECCCCCCCcCC-CCCCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence            345678999999988766432 2334789999999998843221 23678999999999988642222224679999999


Q ss_pred             ccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch
Q 019031          245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG  323 (347)
Q Consensus       245 l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  323 (347)
                      ++++. ..+......+++|+.|.++.+.........+..+++|+.|+++++.++.. ....+..+++|+.|+++++....
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCc
Confidence            99986 33333334789999999996655443334567899999999998887742 23445678999999999874321


Q ss_pred             ---hhhccCcccceEeccccc
Q 019031          324 ---KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       324 ---~~~~~~~~L~~L~l~~c~  341 (347)
                         .+....++|+.|+++++.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             cCHHHhcCcCCCCEEECCCCc
Confidence               223345677777776543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.05  E-value=1.7e-10  Score=103.38  Aligned_cols=194  Identities=10%  Similarity=0.017  Sum_probs=101.4

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++++|+  +..+.. ....+..+..+++|++|+++++.+...+ ...+++|++|+++++.+..-. ...+.++++|+.|
T Consensus        78 ~~L~~L~--L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L  152 (332)
T 2ft3_A           78 QHLYALV--LVNNKI-SKIHEKAFSPLRKLQKLYISKNHLVEIP-PNLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCI  152 (332)
T ss_dssp             TTCCEEE--CCSSCC-CEECGGGSTTCTTCCEEECCSSCCCSCC-SSCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEE
T ss_pred             CCCcEEE--CCCCcc-CccCHhHhhCcCCCCEEECCCCcCCccC-ccccccCCEEECCCCccCccC-HhHhCCCccCCEE
Confidence            3566666  433211 1112334445667777777776654322 122366777777766652111 1224566777777


Q ss_pred             EeeccCCCC----cccccc--------------------CCCceEEEccccc-cchh-hhhhcCCCccEEEeeeeCCCCC
Q 019031          222 CFSNCWGLK----HLCVSK--------------------ASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRP  275 (347)
Q Consensus       222 ~l~~c~~~~----~~~~~~--------------------~~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~  275 (347)
                      ++.++....    ...+..                    .++|+.|+++++. .... .....+++|+.|+++++.....
T Consensus       153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred             ECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence            776654310    001111                    1456666666654 1111 1122556777777765444332


Q ss_pred             ceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchh----hh-----ccCcccceEecccccC
Q 019031          276 RVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK----IK-----ISSNQLKNLLFRSCKY  342 (347)
Q Consensus       276 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----~~-----~~~~~L~~L~l~~c~~  342 (347)
                      ....+..+++|+.|+++++.++.  +...+..+++|+.|+++++.....    +.     ...+.|+.|++.+++.
T Consensus       233 ~~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          233 ENGSLSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCB--CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             ChhHhhCCCCCCEEECCCCcCee--cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence            22235667788888887777663  333356678888888877632211    10     1145677888777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.05  E-value=1.1e-10  Score=105.96  Aligned_cols=196  Identities=11%  Similarity=0.043  Sum_probs=123.1

Q ss_pred             CceEEEeeeecCCcccccccccccc-----cccccEEEEeeeeccCCC------CcCCC-CCcCEEEeeeeeeChHH---
Q 019031          143 GVRELDFENITDENTVYTLPQAIFS-----ANSVTNLRLVWCRLEQPF------DSIML-CSLKKLTLERVCLDEQM---  207 (347)
Q Consensus       143 ~l~~L~~~l~~~~~~~~~l~~~~~~-----~~~L~~L~L~~~~l~~~~------~~~~~-~~L~~L~L~~~~~~~~~---  207 (347)
                      ++++|+  +..+.-... .+..+..     +++|++|+|++|.+....      ....+ ++|++|+|+++.+++..   
T Consensus        52 ~L~~L~--Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  128 (362)
T 3goz_A           52 SVTSLN--LSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE  128 (362)
T ss_dssp             TCCEEE--CCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             ceeEEE--CcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence            799999  654322221 1212222     288999999999876543      13344 79999999999884443   


Q ss_pred             HHHHHhc-CCCccEEEeeccCCCC----cc--ccccCC-CceEEEccccc-c--chh---hhhhcC-CCccEEEeeeeCC
Q 019031          208 VQKLASE-CPLLEDLCFSNCWGLK----HL--CVSKAS-KLKIMEIRSFS-E--EIE---IVEISV-PSLQQLTLLFYGA  272 (347)
Q Consensus       208 l~~i~~~-cp~Le~L~l~~c~~~~----~~--~~~~~~-~L~~L~l~~~~-~--~~~---~~~~~~-p~L~~L~l~~~~~  272 (347)
                      +...+.. +++|++|++.+|....    .+  .+...+ +|+.|++++|. .  ...   ...... ++|++|+++++..
T Consensus       129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence            3343444 5699999999885321    11  112334 89999999986 1  111   112234 5999999986554


Q ss_pred             CCCc----eeeccC-CCCCcEEEeeccccCch---HHHHHHccCCCCCEEeecCcC---C----chhhh---ccCcccce
Q 019031          273 RRPR----VVEVAR-SPHLKKLDLVSVYFADN---EFNHLISKFPSLEDLFVTRCC---L----PGKIK---ISSNQLKN  334 (347)
Q Consensus       273 ~~~~----~~~~~~-~~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~---~----~~~~~---~~~~~L~~  334 (347)
                      ....    ...+.. .++|+.|+++++.+++.   .+..++..+++|+.|++++|.   .    ...+.   ...++|+.
T Consensus       209 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~  288 (362)
T 3goz_A          209 GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL  288 (362)
T ss_dssp             GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred             ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence            3311    111223 46999999999988874   345556778999999999874   1    11222   24557778


Q ss_pred             Eeccccc
Q 019031          335 LLFRSCK  341 (347)
Q Consensus       335 L~l~~c~  341 (347)
                      |++++..
T Consensus       289 LdL~~N~  295 (362)
T 3goz_A          289 VDKNGKE  295 (362)
T ss_dssp             ECTTSCB
T ss_pred             EecCCCc
Confidence            8887654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=3.9e-10  Score=113.06  Aligned_cols=151  Identities=11%  Similarity=0.031  Sum_probs=99.3

Q ss_pred             cCceEEEeeeecCCcccc----------------ccccccc--ccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeee
Q 019031          142 NGVRELDFENITDENTVY----------------TLPQAIF--SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERV  201 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~  201 (347)
                      .+++.|+  +..+.-...                .+|..+.  .+++|++|+|++|.+....  ....+++|+.|+|+++
T Consensus       448 ~~L~~L~--Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          448 TKLQIIY--FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             TTCCEEE--EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             CCCCEEE--CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            5889999  554332221                2777776  8899999999998754322  4678999999999999


Q ss_pred             e-eChHHHHHHH-------hcCCCccEEEeeccCCCCcc----ccccCCCceEEEccccc-cchhhhhhcCCCccEEEee
Q 019031          202 C-LDEQMVQKLA-------SECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL  268 (347)
Q Consensus       202 ~-~~~~~l~~i~-------~~cp~Le~L~l~~c~~~~~~----~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~  268 (347)
                      . ++...+..-+       ..+|+|+.|++.+|... .+    .+..+++|+.|+++++. ..+. ....+++|+.|.++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence            7 6652222222       34569999999988643 33    24567888899888875 2222 12356788888887


Q ss_pred             eeCCCCCceeeccCCCC-CcEEEeeccccC
Q 019031          269 FYGARRPRVVEVARSPH-LKKLDLVSVYFA  297 (347)
Q Consensus       269 ~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~  297 (347)
                      .+... ..+..+..+++ |+.|+++++.++
T Consensus       604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             CCccc-cchHHHhhccccCCEEECcCCCCC
Confidence            54443 23333455666 777777666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.04  E-value=5.1e-10  Score=106.51  Aligned_cols=151  Identities=16%  Similarity=0.113  Sum_probs=80.9

Q ss_pred             CCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--cc--ccccCCCceEEEccccc-cc-hhh-hhhcCC
Q 019031          188 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HL--CVSKASKLKIMEIRSFS-EE-IEI-VEISVP  260 (347)
Q Consensus       188 ~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~--~~~~~~~L~~L~l~~~~-~~-~~~-~~~~~p  260 (347)
                      ..+++|++|+++++.+++.... .+..+++|+.|++.+|....  .+  .+..+++|+.|+++++. .. +.. ....++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            5666777777777766432221 23566777777777665322  11  13456677777777665 11 111 122456


Q ss_pred             CccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch--h-hhccCcccceEec
Q 019031          261 SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG--K-IKISSNQLKNLLF  337 (347)
Q Consensus       261 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~-~~~~~~~L~~L~l  337 (347)
                      +|++|+++++.........+  .++|+.|+++++.++.  +...+..+++|+.|++++|....  . .....++|+.|++
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSC--CTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCcchhhhh--cccCCEEECCCCcccc--cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEEC
Confidence            77777776443322111111  1577777777666652  33333367777777777763221  1 1234567777777


Q ss_pred             ccccCc
Q 019031          338 RSCKYL  343 (347)
Q Consensus       338 ~~c~~l  343 (347)
                      ++++.-
T Consensus       476 ~~N~~~  481 (520)
T 2z7x_B          476 HTNPWD  481 (520)
T ss_dssp             CSSCBC
T ss_pred             cCCCCc
Confidence            766543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.04  E-value=3.6e-10  Score=97.18  Aligned_cols=149  Identities=13%  Similarity=0.039  Sum_probs=77.9

Q ss_pred             ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEEE
Q 019031          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME  244 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~  244 (347)
                      ++|+.|+++++.+....  ....+++|++|+|+++.+.... ...+..+++|+.|++.++.....  -.+..+++|+.|+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            45666777666654332  2455666777777666652211 12245566677777766543211  1223456677777


Q ss_pred             ccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          245 IRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       245 l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ++++. ..+.. ....+++|+.|+++.+.........++.+++|+.|+++++.++.. ....+..+++|+.|+++++
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSC
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCC
Confidence            76664 11111 112456677777664443322222345566677777766665532 1123445666777777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=1.3e-09  Score=109.39  Aligned_cols=147  Identities=14%  Similarity=0.101  Sum_probs=90.6

Q ss_pred             CCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccc----------cCCCceEEEccccc-cchhhhhh--
Q 019031          191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS----------KASKLKIMEIRSFS-EEIEIVEI--  257 (347)
Q Consensus       191 ~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~----------~~~~L~~L~l~~~~-~~~~~~~~--  257 (347)
                      ++|+.|+|+++.+. ..-..++..+++|+.|++.+|.. ..+...          ++++|+.|++++|. ..+.....  
T Consensus       673 ~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~  750 (876)
T 4ecn_A          673 INASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT  750 (876)
T ss_dssp             CCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred             CCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCCCccchHHhhhc
Confidence            36777777776663 11223445678888888877743 222211          12378888888876 22222222  


Q ss_pred             cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec------cccCchHHHHHHccCCCCCEEeecCcCCchhhhc-cCc
Q 019031          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS------VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI-SSN  330 (347)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~  330 (347)
                      .+|+|+.|+++++.... .+..+..+++|+.|+|++      +.+... ++..+..+++|+.|++++|.. ..+.. .++
T Consensus       751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~  827 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSNDI-RKVDEKLTP  827 (876)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCCSCCCS
T ss_pred             cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCCC-CccCHhhcC
Confidence            67888888888555433 344566788888888855      333322 233456688888888888755 43332 346


Q ss_pred             ccceEecccccC
Q 019031          331 QLKNLLFRSCKY  342 (347)
Q Consensus       331 ~L~~L~l~~c~~  342 (347)
                      +|+.|+|++++.
T Consensus       828 ~L~~LdLs~N~l  839 (876)
T 4ecn_A          828 QLYILDIADNPN  839 (876)
T ss_dssp             SSCEEECCSCTT
T ss_pred             CCCEEECCCCCC
Confidence            888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.02  E-value=6e-10  Score=95.75  Aligned_cols=171  Identities=13%  Similarity=0.002  Sum_probs=119.9

Q ss_pred             ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEEEcc
Q 019031          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIR  246 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~l~  246 (347)
                      .+.+.++++++.+...+ ..-.++|++|+|+++.+..... ..+.++++|+.|++.++.....  -.+..+++|+.|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p-~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVP-SGIPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCC-SCCCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccC-CCCCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            56788888887766433 2233789999999998832221 2367899999999999854321  224567999999999


Q ss_pred             ccc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch-
Q 019031          247 SFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-  323 (347)
Q Consensus       247 ~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-  323 (347)
                      ++. ..+. .....+++|++|+++++.........+..+++|+.|+++++.++.. ....+..+++|+.|+++++.... 
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCCcCCcc
Confidence            986 2221 2224679999999996655433333357799999999999888742 12345678999999999984322 


Q ss_pred             --hhhccCcccceEecccccC
Q 019031          324 --KIKISSNQLKNLLFRSCKY  342 (347)
Q Consensus       324 --~~~~~~~~L~~L~l~~c~~  342 (347)
                        ......++|+.|++.+++.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCB
T ss_pred             CHHHHhCCCCCCEEEeeCCce
Confidence              2344668999999987664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.00  E-value=3.8e-09  Score=100.48  Aligned_cols=170  Identities=14%  Similarity=0.095  Sum_probs=123.0

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccC--CCCcCCCCCcCEEEeeeeeeCh-HHHHHHHhcCCCc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ--PFDSIMLCSLKKLTLERVCLDE-QMVQKLASECPLL  218 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~--~~~~~~~~~L~~L~L~~~~~~~-~~l~~i~~~cp~L  218 (347)
                      .+++.|+  +..+.......   ...+++|++|++++|.+..  +.....+++|++|+++++.+.. ..+...+..+++|
T Consensus       302 ~~L~~L~--l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L  376 (520)
T 2z7x_B          302 MNIKNFT--VSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL  376 (520)
T ss_dssp             CCCSEEE--EESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred             CceeEEE--cCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence            5688888  54432222111   1357899999999998765  2356789999999999999953 4555667899999


Q ss_pred             cEEEeeccCCCCccc---cccCCCceEEEccccccchhhhhhcC-CCccEEEeeeeCCCCCceeeccCCCCCcEEEeecc
Q 019031          219 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFSEEIEIVEISV-PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  294 (347)
Q Consensus       219 e~L~l~~c~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~-p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~  294 (347)
                      +.|++++|.....+.   +..+++|+.|++++|. -...+.... ++|+.|+++.+... ..+..+..+++|+.|+++++
T Consensus       377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred             CEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC
Confidence            999999987543233   3457899999999986 212233333 79999999966554 33333458999999999999


Q ss_pred             ccCchHHHH-HHccCCCCCEEeecCcC
Q 019031          295 YFADNEFNH-LISKFPSLEDLFVTRCC  320 (347)
Q Consensus       295 ~~~~~~~~~-~~~~~~~L~~L~l~~c~  320 (347)
                      .++.  +.. .+..+++|+.|++++++
T Consensus       455 ~l~~--l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          455 QLKS--VPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCc--cCHHHhccCCcccEEECcCCC
Confidence            8874  222 46779999999999864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.99  E-value=7.6e-10  Score=111.54  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=16.7

Q ss_pred             ccccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeee
Q 019031          167 SANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL  203 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~  203 (347)
                      .+++|++|+|++|.+....   ...++++|++|+|+++.+
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i  160 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI  160 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence            3445555555554433211   234455555555555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.99  E-value=1.7e-09  Score=94.26  Aligned_cols=171  Identities=16%  Similarity=0.072  Sum_probs=117.1

Q ss_pred             ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEEE
Q 019031          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME  244 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~  244 (347)
                      ++|++|+++++.+....  ....+++|++|+++++.+..-.. ..+.++++|+.|++.++.....  -.+..+++|+.|.
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            57999999998865432  46789999999999997732211 2356799999999998864221  2355679999999


Q ss_pred             ccccc-cchhh-hhhcCCCccEEEeeeeCCCC-CceeeccCCCCCcEEEeeccccCch---HHHHHHccCCCCC-EEeec
Q 019031          245 IRSFS-EEIEI-VEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN---EFNHLISKFPSLE-DLFVT  317 (347)
Q Consensus       245 l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~-~L~l~  317 (347)
                      +.++. ..+.. ....+++|++|+++.+.... .....+..+++|+.|+++++.++..   .+. .+..++.|. .|+++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLS  185 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCEEEECC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh-hhhhccccceeeecC
Confidence            99886 22222 12367999999999655533 2344567899999999998887652   222 233445554 78898


Q ss_pred             CcCCchh--hhccCcccceEeccccc
Q 019031          318 RCCLPGK--IKISSNQLKNLLFRSCK  341 (347)
Q Consensus       318 ~c~~~~~--~~~~~~~L~~L~l~~c~  341 (347)
                      ++.....  ......+|+.|+++++.
T Consensus       186 ~n~l~~~~~~~~~~~~L~~L~L~~n~  211 (276)
T 2z62_A          186 LNPMNFIQPGAFKEIRLKELALDTNQ  211 (276)
T ss_dssp             SSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred             CCcccccCccccCCCcccEEECCCCc
Confidence            8743221  12233479999988765

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.98  E-value=3e-10  Score=72.50  Aligned_cols=40  Identities=23%  Similarity=0.332  Sum_probs=34.0

Q ss_pred             ccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhc
Q 019031           16 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV   55 (347)
Q Consensus        16 ~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~   55 (347)
                      +.+.++.||+|++.+||++|+.+|+++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4578999999999999999999999999999999997654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.98  E-value=1.5e-09  Score=98.59  Aligned_cols=197  Identities=18%  Similarity=0.138  Sum_probs=129.1

Q ss_pred             cCceEEEeeeecCCccccc---ccccccccc-cccEEEEeeeeccCCC--CcCC-----CCCcCEEEeeeeeeC---hHH
Q 019031          142 NGVRELDFENITDENTVYT---LPQAIFSAN-SVTNLRLVWCRLEQPF--DSIM-----LCSLKKLTLERVCLD---EQM  207 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~---l~~~~~~~~-~L~~L~L~~~~l~~~~--~~~~-----~~~L~~L~L~~~~~~---~~~  207 (347)
                      .++++|+  +..+.-....   +...+..++ +|++|+|++|.+....  ....     +++|++|+|+++.++   ...
T Consensus        22 ~~L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           22 HGVTSLD--LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             TTCCEEE--CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCceEEE--ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            4599999  6543322211   113334566 8999999999877543  1122     499999999999883   344


Q ss_pred             HHHHHhcC-CCccEEEeeccCCCCccc-------ccc-CCCceEEEccccc-c--chhhh---hhcCC-CccEEEeeeeC
Q 019031          208 VQKLASEC-PLLEDLCFSNCWGLKHLC-------VSK-ASKLKIMEIRSFS-E--EIEIV---EISVP-SLQQLTLLFYG  271 (347)
Q Consensus       208 l~~i~~~c-p~Le~L~l~~c~~~~~~~-------~~~-~~~L~~L~l~~~~-~--~~~~~---~~~~p-~L~~L~l~~~~  271 (347)
                      +...+..+ ++|+.|++.+|.. ....       +.. .++|+.|++++|. .  ....+   ....+ +|++|+++++.
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence            55556666 8999999999864 3222       112 2599999999986 1  11122   12444 99999999655


Q ss_pred             CCCCcee----eccCC-CCCcEEEeeccccCchHH---HHHHcc-CCCCCEEeecCcCCch-------hhhccCcccceE
Q 019031          272 ARRPRVV----EVARS-PHLKKLDLVSVYFADNEF---NHLISK-FPSLEDLFVTRCCLPG-------KIKISSNQLKNL  335 (347)
Q Consensus       272 ~~~~~~~----~~~~~-~~L~~L~L~~~~~~~~~~---~~~~~~-~~~L~~L~l~~c~~~~-------~~~~~~~~L~~L  335 (347)
                      .......    .+..+ ++|+.|+++++.+.+...   ...+.. .++|+.|++++|....       ......++|+.|
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence            5332221    23445 599999999998876433   333333 4699999999984322       223456899999


Q ss_pred             eccccc
Q 019031          336 LFRSCK  341 (347)
Q Consensus       336 ~l~~c~  341 (347)
                      ++++|.
T Consensus       259 ~L~~n~  264 (362)
T 3goz_A          259 YLDYDI  264 (362)
T ss_dssp             EEEHHH
T ss_pred             EeccCC
Confidence            998875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.97  E-value=9.1e-10  Score=95.37  Aligned_cols=142  Identities=13%  Similarity=0.078  Sum_probs=70.2

Q ss_pred             cccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccc
Q 019031          168 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  247 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~  247 (347)
                      +++|++|++++|.+........+++|++|+|+++.+++-.  . +..+++|+.|++.+|....--.+.. ++|+.|++++
T Consensus        40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~  115 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDN  115 (263)
T ss_dssp             HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCS
T ss_pred             cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccC
Confidence            4555555555555443323445556666666655552111  1 4555666666665553221111222 5566666665


Q ss_pred             cc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          248 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       248 ~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      +. ..+.. ...+++|+.|+++.+......  .+..+++|+.|+++++.+++.   ..+..+++|+.|+++++
T Consensus       116 N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          116 NELRDTDS-LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             SCCSBSGG-GTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred             CccCCChh-hcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence            54 11111 124556666666533332211  345566666666666665553   33445666666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.97  E-value=4.7e-10  Score=90.17  Aligned_cols=129  Identities=19%  Similarity=0.157  Sum_probs=67.0

Q ss_pred             ccccEEEEeeeecc--CCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEc
Q 019031          169 NSVTNLRLVWCRLE--QPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  245 (347)
Q Consensus       169 ~~L~~L~L~~~~l~--~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l  245 (347)
                      ++|++|++++|.+.  ... ....+++|++|+++++.+...   ..+..+++|+.|++.+|....               
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~---------------   85 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFG---------------   85 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCS---------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCch---------------
Confidence            45666666666554  111 224455555555555544221   223344444444444443211               


Q ss_pred             cccccchhhhhhcCCCccEEEeeeeCCCCC-ceeeccCCCCCcEEEeeccccCchHH--HHHHccCCCCCEEeecCcC
Q 019031          246 RSFSEEIEIVEISVPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       246 ~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~l~~c~  320 (347)
                           .+......+|+|+.|+++++..... ....+..+++|+.|+++++.++....  ...+..+|+|+.|++.+|.
T Consensus        86 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           86 -----GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             -----CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             -----HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence                 0122222355666666654433221 11345677888888888777654321  2466778888888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.97  E-value=4.3e-10  Score=100.77  Aligned_cols=193  Identities=13%  Similarity=0.039  Sum_probs=109.6

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChH-HHHHHHhc----
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQ-MVQKLASE----  214 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~-~l~~i~~~----  214 (347)
                      .++++|+  +..+.  ...+|..++  ++|++|+++++.+....  ....+++|++|+++++.++.. .....+..    
T Consensus       102 ~~L~~L~--L~~n~--l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~  175 (332)
T 2ft3_A          102 RKLQKLY--ISKNH--LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN  175 (332)
T ss_dssp             TTCCEEE--CCSSC--CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCS
T ss_pred             CCCCEEE--CCCCc--CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccC
Confidence            4666666  43221  113333332  56666666666544322  234566666666666554211 10111111    


Q ss_pred             ----------------CCCccEEEeeccCCCCc--cccccCCCceEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCC
Q 019031          215 ----------------CPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARR  274 (347)
Q Consensus       215 ----------------cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~  274 (347)
                                      .++|++|++.++.....  ..+..+++|+.|+++++. ..+.. ....+++|++|+++++... 
T Consensus       176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-  254 (332)
T 2ft3_A          176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-  254 (332)
T ss_dssp             CCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             EEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence                            24666666666542211  234567899999999986 22221 2347899999999965553 


Q ss_pred             CceeeccCCCCCcEEEeeccccCchHHHHHHc-----cCCCCCEEeecCcCCch-----hhhccCcccceEeccccc
Q 019031          275 PRVVEVARSPHLKKLDLVSVYFADNEFNHLIS-----KFPSLEDLFVTRCCLPG-----KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       275 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~~~L~~L~l~~c~~~~-----~~~~~~~~L~~L~l~~c~  341 (347)
                      ..+..+..+++|+.|+++++.++......+..     ..++|+.|++.+++...     .....+++|+.+++.+++
T Consensus       255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            33334678999999999988887532222211     25789999999986431     223456788888888765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.96  E-value=1.7e-09  Score=92.19  Aligned_cols=169  Identities=11%  Similarity=0.005  Sum_probs=116.0

Q ss_pred             cCceEEEeeeecCCcccccccc-cccccccccEEEEee-eeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCC
Q 019031          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVW-CRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPL  217 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~-~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~  217 (347)
                      .+++.|+  +..+. ....++. .+..+++|++|++++ +.+....  ...++++|++|+++++.+..  +.. +..+++
T Consensus        55 ~~L~~L~--l~~n~-~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~  128 (239)
T 2xwt_C           55 PNISRIY--VSIDV-TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYS  128 (239)
T ss_dssp             TTCCEEE--EECCS-SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCB
T ss_pred             CCCcEEe--CCCCC-CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-cccccc
Confidence            5889999  55432 0223333 345689999999998 6654322  45689999999999998843  223 677888


Q ss_pred             cc---EEEeeccCCCCccc---cccCCCce-EEEccccc-cchhhhhhcCCCccEEEeeeeC-CCCCceeeccCC-CCCc
Q 019031          218 LE---DLCFSNCWGLKHLC---VSKASKLK-IMEIRSFS-EEIEIVEISVPSLQQLTLLFYG-ARRPRVVEVARS-PHLK  287 (347)
Q Consensus       218 Le---~L~l~~c~~~~~~~---~~~~~~L~-~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~-~~L~  287 (347)
                      |+   .|++.++..+..+.   +.++++|+ .|+++++. ..+.......++|+.|.++++. ........+..+ ++|+
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~  208 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS  208 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred             cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence            98   99999984454433   45678999 99999875 2222222344789999998552 322222345677 9999


Q ss_pred             EEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031          288 KLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       288 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      .|+++++.++.-  ..  ..+++|+.|.+.++.
T Consensus       209 ~L~l~~N~l~~l--~~--~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          209 LLDVSQTSVTAL--PS--KGLEHLKELIARNTW  237 (239)
T ss_dssp             EEECTTCCCCCC--CC--TTCTTCSEEECTTC-
T ss_pred             EEECCCCccccC--Ch--hHhccCceeeccCcc
Confidence            999998887642  11  258999999998863

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.96  E-value=4e-10  Score=100.05  Aligned_cols=172  Identities=16%  Similarity=0.115  Sum_probs=118.3

Q ss_pred             cccccEEEEeeeeccCCC--Cc--CCCCCcCEEEeeeeeeChH--HHH-HHHhcCCCccEEEeeccCCCCc--cccccCC
Q 019031          168 ANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQ--MVQ-KLASECPLLEDLCFSNCWGLKH--LCVSKAS  238 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~--~~--~~~~~L~~L~L~~~~~~~~--~l~-~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~  238 (347)
                      .++|++|++++|.+....  ..  ..+++|++|+|+++.++..  .+. .-+..+++|+.|++.+|.....  ..+.+++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            467999999999876433  22  7799999999999998431  111 1234799999999999865322  2344679


Q ss_pred             CceEEEccccc-cc---hhhh--hhcCCCccEEEeeeeCCCCCcee---eccCCCCCcEEEeeccccCchHHHHHHccC-
Q 019031          239 KLKIMEIRSFS-EE---IEIV--EISVPSLQQLTLLFYGARRPRVV---EVARSPHLKKLDLVSVYFADNEFNHLISKF-  308 (347)
Q Consensus       239 ~L~~L~l~~~~-~~---~~~~--~~~~p~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-  308 (347)
                      +|+.|+++++. ..   +...  ...+|+|++|.++++........   .++.+++|++|+++++.+.+..... +..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence            99999999985 11   1111  13679999999996655321111   2467899999999998887632111 2233 


Q ss_pred             --CCCCEEeecCcCCchhhhc-cCcccceEeccccc
Q 019031          309 --PSLEDLFVTRCCLPGKIKI-SSNQLKNLLFRSCK  341 (347)
Q Consensus       309 --~~L~~L~l~~c~~~~~~~~-~~~~L~~L~l~~c~  341 (347)
                        ++|++|+++++... .+.. .+++|+.|+++++.
T Consensus       249 ~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~  283 (310)
T 4glp_A          249 WSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNR  283 (310)
T ss_dssp             CCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCC
T ss_pred             CcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCc
Confidence              79999999987433 2322 24799999998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.95  E-value=3.1e-10  Score=98.34  Aligned_cols=163  Identities=10%  Similarity=0.016  Sum_probs=118.1

Q ss_pred             ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcccc
Q 019031          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~  248 (347)
                      +++..+++.++.+........+++|++|+++++.+..-  . -+..+++|+.|++.+|.......+..+++|+.|+++++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            44555666665554333456789999999999988322  1 26789999999999986433333677899999999998


Q ss_pred             c-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch-hhh
Q 019031          249 S-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KIK  326 (347)
Q Consensus       249 ~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~~  326 (347)
                      . ..+..+..  ++|+.|+++++.....  -.+..+++|+.|+++++.+++.   ..+..+++|+.|+++++.... ...
T Consensus        96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~~~l  168 (263)
T 1xeu_A           96 RLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNTGGL  168 (263)
T ss_dssp             CCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBCTTS
T ss_pred             ccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcchHHh
Confidence            6 22222222  8999999996655443  2467899999999999998874   246789999999999984322 233


Q ss_pred             ccCcccceEeccccc
Q 019031          327 ISSNQLKNLLFRSCK  341 (347)
Q Consensus       327 ~~~~~L~~L~l~~c~  341 (347)
                      ..+++|+.|++++++
T Consensus       169 ~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTCCCCCEEEEEEEE
T ss_pred             ccCCCCCEEeCCCCc
Confidence            467889999987754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.93  E-value=5.2e-09  Score=102.86  Aligned_cols=150  Identities=17%  Similarity=0.134  Sum_probs=68.0

Q ss_pred             ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEE
Q 019031          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME  244 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~  244 (347)
                      +++++|+++++.+....  ....+++|++|+|+++.+.... ...+.++++|+.|++.+|....  ...+.++++|+.|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccC-HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            45566666655543322  2345556666666555542111 1123445666666665553211  11233455666666


Q ss_pred             ccccc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHH-HccCCCCCEEeecCc
Q 019031          245 IRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHL-ISKFPSLEDLFVTRC  319 (347)
Q Consensus       245 l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~~~L~~L~l~~c  319 (347)
                      +.++. ..+. .....+++|++|+++.+.........+..+++|+.|++.++.++......+ ...+++|+.|+++++
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            66553 1111 111245556666665433322222233455666666665555443222211 113455666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.93  E-value=1.3e-09  Score=90.83  Aligned_cols=142  Identities=18%  Similarity=0.009  Sum_probs=88.9

Q ss_pred             ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEEE
Q 019031          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME  244 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~  244 (347)
                      ++|++|+++++.+....  ....+++|++|+++++.+..- ....+..+++|+.|++.++.....  ..+..+++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            57888888888765433  245788888888888877321 122356788888888887753211  1234567888888


Q ss_pred             ccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          245 IRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       245 l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ++++. ..+.. ....+++|++|+++.+.........+..+++|+.|++.++.+..        .+++|+.|.+..+
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n  175 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWIN  175 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHH
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHH
Confidence            88775 11111 12356788888887544433222235667888888887775542        3566666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.93  E-value=3e-10  Score=89.44  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             ccCCCCCcEEEeeccccCchHH--HHHHccCCCCCEEeec
Q 019031          280 VARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVT  317 (347)
Q Consensus       280 ~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~l~  317 (347)
                      +..+++|+.|+++++.+++...  ...+..+|+|+.|+++
T Consensus       109 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          109 LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            4556666666666665543211  2345556666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.93  E-value=1.2e-08  Score=97.98  Aligned_cols=13  Identities=23%  Similarity=0.143  Sum_probs=6.5

Q ss_pred             cCcccceEecccc
Q 019031          328 SSNQLKNLLFRSC  340 (347)
Q Consensus       328 ~~~~L~~L~l~~c  340 (347)
                      ..++|+.|+++++
T Consensus       471 ~l~~L~~L~L~~N  483 (562)
T 3a79_B          471 HLQALQELNVASN  483 (562)
T ss_dssp             SSCCCSEEECCSS
T ss_pred             CCCCCCEEECCCC
Confidence            3445555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.92  E-value=9.5e-10  Score=110.85  Aligned_cols=57  Identities=12%  Similarity=0.091  Sum_probs=37.3

Q ss_pred             CCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031          284 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       284 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~  341 (347)
                      ++|+.|+++++.+... ....+..+++|+.|+++++....   ......++|+.|+++++.
T Consensus       266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred             CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence            5778888876666542 12345667888888888774322   223456788888887764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.89  E-value=1.2e-08  Score=95.34  Aligned_cols=137  Identities=18%  Similarity=0.075  Sum_probs=54.8

Q ss_pred             cccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEc
Q 019031          166 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  245 (347)
Q Consensus       166 ~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l  245 (347)
                      ..+++|++|+++++.+...  ....++|++|+++++.+..  +.. +.++++|+.|++.+|... .+... .++|+.|++
T Consensus       150 ~~l~~L~~L~l~~N~l~~l--p~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N~l~-~l~~~-~~~L~~L~l  222 (454)
T 1jl5_A          150 QNSSFLKIIDVDNNSLKKL--PDLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNNSLK-KLPDL-PLSLESIVA  222 (454)
T ss_dssp             TTCTTCCEEECCSSCCSCC--CCCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS-SCCCC-CTTCCEEEC
T ss_pred             CCCCCCCEEECCCCcCccc--CCCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCCcCC-cCCCC-cCcccEEEC
Confidence            3344455555544443321  1122345555555444421  111 344455555555444321 11110 134555555


Q ss_pred             cccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          246 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       246 ~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ++|. ..+.. ...+++|++|+++++.... ..   ..+++|+.|+++++.+..     +....++|+.|++++|
T Consensus       223 ~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~---~~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          223 GNNILEELPE-LQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSEN  287 (454)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred             cCCcCCcccc-cCCCCCCCEEECCCCcCCc-cc---ccccccCEEECCCCcccc-----cCcccCcCCEEECcCC
Confidence            5543 11111 1144555555555322211 00   123455555555544432     1112355666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=4.3e-09  Score=95.19  Aligned_cols=134  Identities=20%  Similarity=0.174  Sum_probs=83.7

Q ss_pred             HHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccccc---cchhhhhh-cCCCccEEEeeeeCC---CCC-c--
Q 019031          207 MVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS---EEIEIVEI-SVPSLQQLTLLFYGA---RRP-R--  276 (347)
Q Consensus       207 ~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~-~~p~L~~L~l~~~~~---~~~-~--  276 (347)
                      ++..++..+|+|++|.|.+|.+..-..+. .++|++|.+..|.   ..+..+.. .+|+|++|.++.+..   ... .  
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            35567788889999998877443222232 5789999888775   22223332 678999988862110   010 1  


Q ss_pred             ---eeeccCCCCCcEEEeeccccCchHHHHHH--ccCCCCCEEeecCcCCch----hhh---ccCcccceEeccccc
Q 019031          277 ---VVEVARSPHLKKLDLVSVYFADNEFNHLI--SKFPSLEDLFVTRCCLPG----KIK---ISSNQLKNLLFRSCK  341 (347)
Q Consensus       277 ---~~~~~~~~~L~~L~L~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~----~~~---~~~~~L~~L~l~~c~  341 (347)
                         .+....+|+|+.|++.++.+.+.....++  ..+|+|++|+|+.+....    .+.   ..+++|+.|+|++|.
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence               12224578999999988777765444444  257889999998764322    121   345788889888774

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.87  E-value=1e-08  Score=82.25  Aligned_cols=125  Identities=21%  Similarity=0.061  Sum_probs=89.2

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++++|+  +..+......++..+..+++|+.|++++|.+........+++|++|+++++.+... +...+..+++|+.|
T Consensus        24 ~~L~~L~--l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEE--CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred             ccCCEEE--CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence            5788888  65543332466666677899999999999876555567899999999999998542 44566779999999


Q ss_pred             EeeccCCCCc---cccccCCCceEEEccccc-cchhh----hhhcCCCccEEEeee
Q 019031          222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTLLF  269 (347)
Q Consensus       222 ~l~~c~~~~~---~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l~~  269 (347)
                      ++.+|.....   ..+..+++|+.|+++++. .....    ....+|+|++|++..
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            9999864321   234567889999998886 22221    223566777776664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.85  E-value=3.6e-08  Score=95.46  Aligned_cols=171  Identities=15%  Similarity=0.063  Sum_probs=91.2

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .+++.|+  +..+..  ..+|.   .+++|++|+|++|.+...+  ..+++|++|+|+++.++.-     -...++|+.|
T Consensus        61 ~~L~~L~--L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp--~~l~~L~~L~Ls~N~l~~l-----~~~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLV--IPDNNL--TSLPA---LPPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLTHL-----PALPSGLCKL  126 (622)
T ss_dssp             TTCSEEE--ECSCCC--SCCCC---CCTTCCEEEECSCCCSCCC--CCCTTCCEEEECSCCCCCC-----CCCCTTCCEE
T ss_pred             CCCcEEE--ecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCC--CCCCCCCEEECcCCcCCCC-----CCCCCCcCEE
Confidence            4666666  433221  12332   3466777777776655322  2566777777776665210     1145667777


Q ss_pred             EeeccCCCCccccccCCCceEEEccccccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHH
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  301 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  301 (347)
                      ++.+|. +..+.. .+++|+.|++++|.  +..+....++|+.|.++.+.... .+   ..+++|+.|+++++.++.   
T Consensus       127 ~L~~N~-l~~lp~-~l~~L~~L~Ls~N~--l~~l~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~---  195 (622)
T 3g06_A          127 WIFGNQ-LTSLPV-LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS---  195 (622)
T ss_dssp             ECCSSC-CSCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC---
T ss_pred             ECCCCC-CCcCCC-CCCCCCEEECcCCc--CCCcCCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC---
Confidence            776664 332222 23677777777764  33333345667777776433322 11   446788888887776654   


Q ss_pred             HHHHccCCCCCEEeecCcCCchhhhccCcccceEecccc
Q 019031          302 NHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSC  340 (347)
Q Consensus       302 ~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c  340 (347)
                        +....++|+.|++++|.. ..+....++|+.|+++++
T Consensus       196 --l~~~~~~L~~L~L~~N~l-~~l~~~~~~L~~L~Ls~N  231 (622)
T 3g06_A          196 --LPTLPSELYKLWAYNNRL-TSLPALPSGLKELIVSGN  231 (622)
T ss_dssp             --CCCCCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSS
T ss_pred             --CCCccchhhEEECcCCcc-cccCCCCCCCCEEEccCC
Confidence              112346677777666521 122222345555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.84  E-value=8.9e-09  Score=98.63  Aligned_cols=114  Identities=16%  Similarity=0.054  Sum_probs=52.5

Q ss_pred             ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcccc
Q 019031          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~  248 (347)
                      ++|++|+|++|.+...+  ..+++|++|+|+++.++.  +.. +.  .+|+.|++.+|.. ..+.. .+++|+.|+++++
T Consensus        80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N  150 (571)
T 3cvr_A           80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLDVDNNQL-TMLPE-LPALLEYINADNN  150 (571)
T ss_dssp             TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCC-SCCCC-CCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEECCCCcC-CCCCC-cCccccEEeCCCC
Confidence            45666666665554322  445566666666655522  111 11  1566666655532 22222 3455556655555


Q ss_pred             ccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031          249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       249 ~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (347)
                      .  +..+....++|+.|.++++.... .+. +.  ++|+.|+++++.++
T Consensus       151 ~--l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          151 Q--LTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             C--CSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             c--cCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            3  22222244555555555333322 111 22  55555555555444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.83  E-value=6.7e-09  Score=99.85  Aligned_cols=166  Identities=14%  Similarity=0.073  Sum_probs=79.8

Q ss_pred             ccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--c--cccccCCCceEEEcc
Q 019031          171 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--H--LCVSKASKLKIMEIR  246 (347)
Q Consensus       171 L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~--~~~~~~~~L~~L~l~  246 (347)
                      |++|+++++.+........+++|++|+++++.+++... ..+.++++|+.|++.++....  .  ..+..+++|+.|+++
T Consensus       333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             ceEEEccCCCcccccCccCCCCceEEECCCCccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            55555555544332222456666666666666543211 123556666666666654221  1  113345666666666


Q ss_pred             ccc-cc-hhh-hhhcCCCccEEEeeeeCCCCCceeeccCC-CCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCc
Q 019031          247 SFS-EE-IEI-VEISVPSLQQLTLLFYGARRPRVVEVARS-PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP  322 (347)
Q Consensus       247 ~~~-~~-~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  322 (347)
                      ++. .. +.. ....+++|+.|+++.+.....   .+..+ ++|+.|+++++.++.  +...+..+++|+.|+++++...
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGS---VFRCLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQLK  486 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG---GGSSCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSSCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcc---hhhhhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCCCCC
Confidence            654 11 111 122446666666664333211   11222 466666666665542  2222225666666666665321


Q ss_pred             h--h-hhccCcccceEecccccC
Q 019031          323 G--K-IKISSNQLKNLLFRSCKY  342 (347)
Q Consensus       323 ~--~-~~~~~~~L~~L~l~~c~~  342 (347)
                      .  . .....++|+.|++++++.
T Consensus       487 ~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          487 SVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CCCTTSTTTCTTCCCEECCSCCB
T ss_pred             CCCHHHHhcCCCCCEEEecCCCc
Confidence            1  1 123445666666665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.82  E-value=8.6e-09  Score=80.92  Aligned_cols=124  Identities=21%  Similarity=0.135  Sum_probs=79.2

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++++|+  +..+......++..+..+++|+.|++++|.+........+++|++|+++++.++.. +...+..+++|+.|
T Consensus        17 ~~l~~L~--l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEE--CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred             ccCeEEE--ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence            4677777  54433322355655566788888888888766544566788888888888887432 44556678888888


Q ss_pred             EeeccCCCCc---cccccCCCceEEEccccc-cchhh----hhhcCCCccEEEee
Q 019031          222 CFSNCWGLKH---LCVSKASKLKIMEIRSFS-EEIEI----VEISVPSLQQLTLL  268 (347)
Q Consensus       222 ~l~~c~~~~~---~~~~~~~~L~~L~l~~~~-~~~~~----~~~~~p~L~~L~l~  268 (347)
                      ++.+|.....   ..+..+++|+.|++++|. .....    ....+|+|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            8888763221   234557788888888775 22211    22345666666543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.82  E-value=3.5e-08  Score=95.55  Aligned_cols=171  Identities=19%  Similarity=0.132  Sum_probs=111.5

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .+++.|+  +..+..  ..+|.   ..++|++|++++|.+....  ..+++|++|+++++.++.     +-...++|+.|
T Consensus        81 ~~L~~L~--Ls~N~l--~~lp~---~l~~L~~L~Ls~N~l~~l~--~~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L  146 (622)
T 3g06_A           81 PELRTLE--VSGNQL--TSLPV---LPPGLLELSIFSNPLTHLP--ALPSGLCKLWIFGNQLTS-----LPVLPPGLQEL  146 (622)
T ss_dssp             TTCCEEE--ECSCCC--SCCCC---CCTTCCEEEECSCCCCCCC--CCCTTCCEEECCSSCCSC-----CCCCCTTCCEE
T ss_pred             CCCCEEE--cCCCcC--CcCCC---CCCCCCEEECcCCcCCCCC--CCCCCcCEEECCCCCCCc-----CCCCCCCCCEE
Confidence            6899999  654332  23443   4689999999999876543  277899999999987732     11245899999


Q ss_pred             EeeccCCCCccccccCCCceEEEccccccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHH
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  301 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  301 (347)
                      ++.+|. +..+.. ..++|+.|.+.++.  +..+...+++|+.|+++.+.... ..   ..+++|+.|++.++.++.   
T Consensus       147 ~Ls~N~-l~~l~~-~~~~L~~L~L~~N~--l~~l~~~~~~L~~L~Ls~N~l~~-l~---~~~~~L~~L~L~~N~l~~---  215 (622)
T 3g06_A          147 SVSDNQ-LASLPA-LPSELCKLWAYNNQ--LTSLPMLPSGLQELSVSDNQLAS-LP---TLPSELYKLWAYNNRLTS---  215 (622)
T ss_dssp             ECCSSC-CSCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSS---
T ss_pred             ECcCCc-CCCcCC-ccCCCCEEECCCCC--CCCCcccCCCCcEEECCCCCCCC-CC---CccchhhEEECcCCcccc---
Confidence            999885 333322 24789999999885  44455667889999998554432 11   235778888887776653   


Q ss_pred             HHHHccCCCCCEEeecCcCCchhhhccCcccceEecccc
Q 019031          302 NHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSC  340 (347)
Q Consensus       302 ~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c  340 (347)
                        +...+++|+.|++++|.. ..+...+++|+.|+++++
T Consensus       216 --l~~~~~~L~~L~Ls~N~L-~~lp~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          216 --LPALPSGLKELIVSGNRL-TSLPVLPSELKELMVSGN  251 (622)
T ss_dssp             --CCCCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSS
T ss_pred             --cCCCCCCCCEEEccCCcc-CcCCCCCCcCcEEECCCC
Confidence              123356777777776622 223334455666666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.81  E-value=5.4e-09  Score=83.78  Aligned_cols=82  Identities=9%  Similarity=0.122  Sum_probs=68.3

Q ss_pred             cccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeee-eChHHHHHHHhc---CCCccEEEeeccCCCCc---cccccCC
Q 019031          168 ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASE---CPLLEDLCFSNCWGLKH---LCVSKAS  238 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~---cp~Le~L~l~~c~~~~~---~~~~~~~  238 (347)
                      .-.|++|++++|.+...+  ...+|++|++|+|++|. +++.++..+...   |++|++|+|++|..++.   ..+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            457999999999876554  45789999999999996 599999998763   78999999999988764   2345689


Q ss_pred             CceEEEccccc
Q 019031          239 KLKIMEIRSFS  249 (347)
Q Consensus       239 ~L~~L~l~~~~  249 (347)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999999997

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.78  E-value=3e-09  Score=88.59  Aligned_cols=145  Identities=14%  Similarity=0.073  Sum_probs=98.6

Q ss_pred             cEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc---cccCCCceEEEcccc
Q 019031          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRSF  248 (347)
Q Consensus       172 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~---~~~~~~L~~L~l~~~  248 (347)
                      +.++..+..+...+ ....++|++|+++++.++.- ....+..+++|+.|++.++.. ..+.   +..+++|+.|+++++
T Consensus        10 ~~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVP-TGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCC-CCCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCC
Confidence            34555544433322 33457899999999988421 123357899999999998853 3322   356789999999988


Q ss_pred             c-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031          249 S-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       249 ~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      . ..+.. ....+++|++|+++.+.........+..+++|+.|+++++.++.. ....+..+++|+.|++++++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCC
Confidence            6 22222 224679999999986555433233357889999999998887642 22345678999999999863

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.74  E-value=2.2e-08  Score=84.65  Aligned_cols=135  Identities=16%  Similarity=0.015  Sum_probs=88.8

Q ss_pred             ccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---c
Q 019031          159 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---C  233 (347)
Q Consensus       159 ~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~  233 (347)
                      ..+|..+  .++|++|+|+++.+....  ....+++|++|+|+++.+..-. ...+.++++|+.|++.++.. ..+   .
T Consensus        32 ~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~  107 (229)
T 3e6j_A           32 ASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQL-TVLPSAV  107 (229)
T ss_dssp             SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred             CccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcC-CccChhH
Confidence            3444433  278899999998866542  4567889999999988873111 12356788999999988753 322   2


Q ss_pred             cccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031          234 VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       234 ~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (347)
                      +..+++|+.|+++++. ..+......+++|+.|+++++.........+..+++|+.|++.++.+.
T Consensus       108 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            3457889999988875 222222246788888888755443322234567788888888777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=1.4e-07  Score=85.18  Aligned_cols=204  Identities=16%  Similarity=0.100  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHhhhccCcccceEEEEEecCCCC-CC-hhHHHHHHHHHH-HcCceEEEeeeecCCcc--------ccccc
Q 019031           94 KFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK-GS-APIVDRWIRLAV-ENGVRELDFENITDENT--------VYTLP  162 (347)
Q Consensus        94 ~f~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~-~~-~~~~~~~i~~~~-~~~l~~L~~~l~~~~~~--------~~~l~  162 (347)
                      .+.+.+.+++.  ......++.+.+..-.  +. .. ...++.++..+. .++++.|.  +......        ...+.
T Consensus        92 ~~~~~~~~fl~--~~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~--l~~~~~e~~~is~~~~~~L~  165 (362)
T 2ra8_A           92 EGVNLMDKILK--DKKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLF--WGDIDFEEQEISWIEQVDLS  165 (362)
T ss_dssp             TTCCHHHHHHH--CTTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEE--ECCCCTTTCCGGGCBCCBCH
T ss_pred             cHHHHHHHHhc--CCCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhhee--ecCcchhhcccccccccCHH
Confidence            34455555552  1223456777666332  22 11 123444443332 37999998  5321111        11233


Q ss_pred             ccccccccccEEEEeeee-ccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHh-cCCCccEEEeeccCC-------CCc--
Q 019031          163 QAIFSANSVTNLRLVWCR-LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWG-------LKH--  231 (347)
Q Consensus       163 ~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~-~cp~Le~L~l~~c~~-------~~~--  231 (347)
                      ..+..+++|+.|.|+++. +...  ....++|++|.|..+.++...+..+.. .+|+|+.|.|..+..       +..  
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~--~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIG--KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCC--SCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHHhcCCCCcEEEEeCCCCceec--cccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            444557999999999874 2222  134899999999998888888888764 699999999863211       111  


Q ss_pred             --cccccCCCceEEEcccccc---chhhhh--hcCCCccEEEeeeeCCCCC----ceeeccCCCCCcEEEeeccccCchH
Q 019031          232 --LCVSKASKLKIMEIRSFSE---EIEIVE--ISVPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDLVSVYFADNE  300 (347)
Q Consensus       232 --~~~~~~~~L~~L~l~~~~~---~~~~~~--~~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~~~~~  300 (347)
                        +....+|+|+.|.+.+|.-   ....+.  ..+|+|++|+++.+...+.    ....+..+++|+.|+++.+.+++..
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence              1112367777777776650   011111  1345566666653222211    0001133456666666555555544


Q ss_pred             HHHHH
Q 019031          301 FNHLI  305 (347)
Q Consensus       301 ~~~~~  305 (347)
                      ...+.
T Consensus       324 ~~~l~  328 (362)
T 2ra8_A          324 KKELQ  328 (362)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.72  E-value=3.3e-09  Score=96.52  Aligned_cols=134  Identities=17%  Similarity=0.183  Sum_probs=64.8

Q ss_pred             ccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHH----hcCCCccEEEeeccCCCCc-----c--cc
Q 019031          169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLA----SECPLLEDLCFSNCWGLKH-----L--CV  234 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~----~~cp~Le~L~l~~c~~~~~-----~--~~  234 (347)
                      ++|++|+|++|.+....   ....+++|++|+|+++.+++.+...+.    ..++.|+.|++.+|.. +.     +  .+
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL-TAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCC-HHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCC-ChHHHHHHHHHH
Confidence            56777777766654322   223445667777777766555544433    2356667777666642 11     1  01


Q ss_pred             ccCCCceEEEccccc---cchhhh---hhcCCCccEEEeeeeCCCCCce----eeccCCCCCcEEEeeccccCchHHHH
Q 019031          235 SKASKLKIMEIRSFS---EEIEIV---EISVPSLQQLTLLFYGARRPRV----VEVARSPHLKKLDLVSVYFADNEFNH  303 (347)
Q Consensus       235 ~~~~~L~~L~l~~~~---~~~~~~---~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~  303 (347)
                      ...++|+.|++++|.   .+...+   ....++|++|+++++.......    ..+...++|+.|+|+++.+++.....
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~  258 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV  258 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence            234566666666664   111111   1233455555555433322110    11223455555555555555544443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.71  E-value=1.3e-08  Score=85.65  Aligned_cols=128  Identities=14%  Similarity=0.044  Sum_probs=79.3

Q ss_pred             ccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEE
Q 019031          169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIM  243 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L  243 (347)
                      +.++.|+++++.+....   ....+++|++|+|+++.++.-. ...+.++++|+.|++.++.....  -.+..+++|+.|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            45678888887755331   2467888888888888763211 12256678888888887754221  224557788888


Q ss_pred             Eccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031          244 EIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       244 ~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (347)
                      +++++. ..+ ......+++|+.|+++.+.........+..+++|+.|++.++.+.
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            888775 111 112235677888887754443332334566777888888766654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.67  E-value=3.6e-08  Score=82.87  Aligned_cols=127  Identities=12%  Similarity=0.040  Sum_probs=83.0

Q ss_pred             ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEE
Q 019031          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIM  243 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L  243 (347)
                      ++|+.|+++++.+....  ....+++|++|+|+++.+..-. ...+.++++|+.|++.++.. ..+   .+.++++|+.|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEE
Confidence            57888998888765332  4567888999999888773221 12256788888888888753 222   23457888888


Q ss_pred             Eccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031          244 EIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       244 ~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (347)
                      +++++. ..+ ......+++|+.|+++++.........+..+++|+.|++.++.+.
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            888875 111 112235678888888755443333334566788888888777654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.64  E-value=2.3e-07  Score=86.72  Aligned_cols=156  Identities=17%  Similarity=0.038  Sum_probs=70.9

Q ss_pred             ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcccc
Q 019031          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~  248 (347)
                      ++|++|++++|.+........+++|++|+++++.+..  +.   ...++|+.|++.+|....--.+..+++|+.|+++++
T Consensus       173 ~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK--LP---DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN  247 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc--CC---CCcCcccEEECcCCcCCcccccCCCCCCCEEECCCC
Confidence            3666666666665443334556666666666665521  00   112455566555553211111233455555555554


Q ss_pred             c-c-----------------chhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccC-C
Q 019031          249 S-E-----------------EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF-P  309 (347)
Q Consensus       249 ~-~-----------------~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-~  309 (347)
                      . .                 .+..+....++|+.|+++++....   + ....++|+.|+++++.++.      +..+ +
T Consensus       248 ~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~---l-~~~~~~L~~L~l~~N~l~~------i~~~~~  317 (454)
T 1jl5_A          248 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG---L-SELPPNLYYLNASSNEIRS------LCDLPP  317 (454)
T ss_dssp             CCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE---E-SCCCTTCCEEECCSSCCSE------ECCCCT
T ss_pred             cCCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCc---c-cCcCCcCCEEECcCCcCCc------ccCCcC
Confidence            3 0                 111122223444444444222111   0 0112455566665555443      1123 3


Q ss_pred             CCCEEeecCcCCchhhhccCcccceEecccc
Q 019031          310 SLEDLFVTRCCLPGKIKISSNQLKNLLFRSC  340 (347)
Q Consensus       310 ~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c  340 (347)
                      +|+.|+++++... .+....++|+.|+++++
T Consensus       318 ~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N  347 (454)
T 1jl5_A          318 SLEELNVSNNKLI-ELPALPPRLERLIASFN  347 (454)
T ss_dssp             TCCEEECCSSCCS-CCCCCCTTCCEEECCSS
T ss_pred             cCCEEECCCCccc-cccccCCcCCEEECCCC
Confidence            6677777665322 23333456666666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.59  E-value=6.5e-08  Score=77.51  Aligned_cols=82  Identities=11%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             CceEEEccccc---cchhhhhhcCCCccEEEeeeeCC-CCCceeeccC----CCCCcEEEeecc-ccCchHHHHHHccCC
Q 019031          239 KLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVAR----SPHLKKLDLVSV-YFADNEFNHLISKFP  309 (347)
Q Consensus       239 ~L~~L~l~~~~---~~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~----~~~L~~L~L~~~-~~~~~~~~~~~~~~~  309 (347)
                      +|++|++++|.   .++..+ ..+++|++|.+++|.. ++.....+..    +++|++|+|+++ .+++.++..+ ..++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred             eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence            45666666554   222222 2455555555554432 1111111222    234555555443 3555555443 2355


Q ss_pred             CCCEEeecCcCCc
Q 019031          310 SLEDLFVTRCCLP  322 (347)
Q Consensus       310 ~L~~L~l~~c~~~  322 (347)
                      +|++|++.+|+.+
T Consensus       140 ~L~~L~L~~c~~I  152 (176)
T 3e4g_A          140 NLKYLFLSDLPGV  152 (176)
T ss_dssp             TCCEEEEESCTTC
T ss_pred             CCCEEECCCCCCC
Confidence            5555555555433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.58  E-value=5.4e-08  Score=81.76  Aligned_cols=145  Identities=14%  Similarity=0.014  Sum_probs=100.3

Q ss_pred             cEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccc
Q 019031          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS  249 (347)
Q Consensus       172 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~  249 (347)
                      +.++++++.+...+ ..-.++|+.|+|+++.+..-. ...+.++++|+.|++.++....  .-.+.++++|+.|+++++.
T Consensus        14 ~~v~c~~~~l~~iP-~~l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIP-TNLPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCC-SSCCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCC-CccCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            45666665554332 122368999999999874221 1235678999999999886422  1245568999999999986


Q ss_pred             -cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          250 -EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       250 -~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                       ..+.. +...+++|+.|+++++.........+..+++|+.|+|+++.++... ...+..+++|+.|+++++
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCC
Confidence             22222 2236799999999966554433445678899999999988876532 234567899999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.58  E-value=6.1e-08  Score=94.04  Aligned_cols=154  Identities=14%  Similarity=0.016  Sum_probs=86.7

Q ss_pred             cCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccc--c-chhhhhhcCCC
Q 019031          187 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS--E-EIEIVEISVPS  261 (347)
Q Consensus       187 ~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~--~-~~~~~~~~~p~  261 (347)
                      ...+++|+.+.+..+......-...+..+++++.+++..+....  ......+++|+.|.++++.  . ........+++
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~  495 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  495 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc
Confidence            34566666666665544111111224456666666666553211  1123345788888888764  1 11222335678


Q ss_pred             ccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhh---hccC-cccceEec
Q 019031          262 LQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISS-NQLKNLLF  337 (347)
Q Consensus       262 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~-~~L~~L~l  337 (347)
                      |+.|+++++......+..++++++|+.|+|+++.++.-. ...+..+++|+.|+++++......   .... ++|+.|+|
T Consensus       496 L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence            888888755443333334567788888888877765421 233566788888888876432221   1222 57888888


Q ss_pred             cccc
Q 019031          338 RSCK  341 (347)
Q Consensus       338 ~~c~  341 (347)
                      ++.+
T Consensus       575 ~~Np  578 (635)
T 4g8a_A          575 TQND  578 (635)
T ss_dssp             TTCC
T ss_pred             eCCC
Confidence            7544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.58  E-value=7.3e-08  Score=87.30  Aligned_cols=148  Identities=20%  Similarity=0.132  Sum_probs=94.3

Q ss_pred             ccccEEEEeeeeccCCC--CcC-CCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceE
Q 019031          169 NSVTNLRLVWCRLEQPF--DSI-MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKI  242 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~--~~~-~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~  242 (347)
                      +.++.|+|+++.+....  ... .+++|++|+|+++.+..-.- ..+.++++|+.|+|.++.. ..+   .+.++++|+.
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCE
Confidence            45888888888765432  233 78889999998887732211 1256788899999988753 322   2456788999


Q ss_pred             EEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeec---cCCCCCcEEEeeccccCchHHHHHHccCCC--CCEEe
Q 019031          243 MEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEV---ARSPHLKKLDLVSVYFADNEFNHLISKFPS--LEDLF  315 (347)
Q Consensus       243 L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~--L~~L~  315 (347)
                      |+++++. ..+ ......+++|+.|+++.+.........+   ..+++|+.|+|+++.++.-.. ..+..+++  ++.|+
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~  195 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLY  195 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEE
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEE
Confidence            9998876 222 1223367889999888554433211122   468899999998888775322 33445665  47788


Q ss_pred             ecCc
Q 019031          316 VTRC  319 (347)
Q Consensus       316 l~~c  319 (347)
                      ++++
T Consensus       196 l~~N  199 (361)
T 2xot_A          196 LHNN  199 (361)
T ss_dssp             CCSS
T ss_pred             ecCC
Confidence            8764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.57  E-value=7.6e-08  Score=80.83  Aligned_cols=145  Identities=15%  Similarity=0.054  Sum_probs=99.4

Q ss_pred             cEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEEEcccc
Q 019031          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSF  248 (347)
Q Consensus       172 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~  248 (347)
                      +.++++++.+...+ ..-.+.+++|+|+++.+..-.....+..+++|+.|++.++.. ..+   .+.++++|+.|+++++
T Consensus        14 ~~l~~s~n~l~~iP-~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIP-EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCc-cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCCEEECCCC
Confidence            57777777665432 223457889999998874332223357789999999988753 322   3556789999999988


Q ss_pred             c-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          249 S-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       249 ~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      . ..+. .....+++|++|.++++.........+..+++|+.|+++++.++... ...+..+++|+.|+++++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCc
Confidence            6 2222 22346789999999865554433445678899999999888876531 244567899999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.56  E-value=6.1e-08  Score=78.34  Aligned_cols=133  Identities=15%  Similarity=0.017  Sum_probs=68.3

Q ss_pred             cccccccEEEEeeeeccCCCCcCC-CCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031          166 FSANSVTNLRLVWCRLEQPFDSIM-LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (347)
Q Consensus       166 ~~~~~L~~L~L~~~~l~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~  244 (347)
                      ..+.+|++|++++|.+........ +++|+.|+++++.++.-   ..+..+++|+.|++.+|.. ..+.           
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~-----------   80 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIG-----------   80 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEEC-----------
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccC-----------
Confidence            345667777777766553222222 23666666666655321   1233444455555544421 1111           


Q ss_pred             ccccccchhhhhhcCCCccEEEeeeeCCCCCce-eeccCCCCCcEEEeeccccCch--HHHHHHccCCCCCEEeecCcCC
Q 019031          245 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLFVTRCCL  321 (347)
Q Consensus       245 l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~l~~c~~  321 (347)
                              ..+...+|+|+.|+++.+....... ..+..+++|+.|+++++.+...  ....++..+|+|+.|+++.+..
T Consensus        81 --------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           81 --------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             --------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             --------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence                    0111245555555555333322111 1346678888888877766531  1123466788888888887643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.53  E-value=1e-08  Score=84.70  Aligned_cols=131  Identities=16%  Similarity=0.121  Sum_probs=68.3

Q ss_pred             ccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCc
Q 019031          161 LPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKL  240 (347)
Q Consensus       161 l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L  240 (347)
                      ++..+..+++|++|++++|.+........+++|++|+++++.+.  .+...+..+|+|+.|++.+|....--.+.     
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~-----  112 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIE-----  112 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHH-----
T ss_pred             hhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccc-----
Confidence            33344556677777777776554333445667777777776663  12233344566666666655321101111     


Q ss_pred             eEEEccccccchhhhhhcCCCccEEEeeeeCCCCCce-eeccCCCCCcEEEeeccccCch---------HHHHHHccCCC
Q 019031          241 KIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFADN---------EFNHLISKFPS  310 (347)
Q Consensus       241 ~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~---------~~~~~~~~~~~  310 (347)
                                       .+++|+.|+++++....... ..+..+++|+.|++.++.+.+.         ....++..+|+
T Consensus       113 -----------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~  175 (198)
T 1ds9_A          113 -----------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN  175 (198)
T ss_dssp             -----------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS
T ss_pred             -----------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCC
Confidence                             23444444444333221111 1345677777777776655332         12334567788


Q ss_pred             CCEEe
Q 019031          311 LEDLF  315 (347)
Q Consensus       311 L~~L~  315 (347)
                      |+.|+
T Consensus       176 L~~Ld  180 (198)
T 1ds9_A          176 LKKLD  180 (198)
T ss_dssp             CSEEC
T ss_pred             cEEEC
Confidence            88776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.53  E-value=1.7e-08  Score=83.31  Aligned_cols=99  Identities=16%  Similarity=0.159  Sum_probs=64.7

Q ss_pred             CCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEe
Q 019031          237 ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF  315 (347)
Q Consensus       237 ~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~  315 (347)
                      +++|+.|++++|. ..+......+|+|+.|+++++..... . .+..+++|+.|+++++.+++......+..+++|+.|+
T Consensus        69 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             HTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             CCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence            3445555554443 11222223457888888886555432 2 4567899999999999988744435677899999999


Q ss_pred             ecCcCCchh-------------hhccCcccceEec
Q 019031          316 VTRCCLPGK-------------IKISSNQLKNLLF  337 (347)
Q Consensus       316 l~~c~~~~~-------------~~~~~~~L~~L~l  337 (347)
                      +++++....             +...+++|+.|+-
T Consensus       147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred             ecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence            999843222             2346788998873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.51  E-value=6.8e-08  Score=87.80  Aligned_cols=155  Identities=17%  Similarity=0.123  Sum_probs=112.4

Q ss_pred             cccccEEEEeeeeccCCC-------CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--ccc----
Q 019031          168 ANSVTNLRLVWCRLEQPF-------DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCV----  234 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~-------~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~----  234 (347)
                      .++|++|+|++|.+....       .....++|++|+|+++.+++..+..+...+++|+.|++.+|..-..  ..+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            367999999999865432       1124579999999999999888988888889999999999854211  111    


Q ss_pred             -ccCCCceEEEccccc---cchhhh---hhcCCCccEEEeeeeCCCCCc----eeeccCCCCCcEEEeeccccCchHHHH
Q 019031          235 -SKASKLKIMEIRSFS---EEIEIV---EISVPSLQQLTLLFYGARRPR----VVEVARSPHLKKLDLVSVYFADNEFNH  303 (347)
Q Consensus       235 -~~~~~L~~L~l~~~~---~~~~~~---~~~~p~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~~~~  303 (347)
                       ...++|+.|++++|.   .+...+   ....++|++|+++++...+..    ...+...++|+.|+|+++.+++.....
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             235789999999997   122222   236789999999965543211    123456789999999999998865444


Q ss_pred             H---HccCCCCCEEeecCcCCc
Q 019031          304 L---ISKFPSLEDLFVTRCCLP  322 (347)
Q Consensus       304 ~---~~~~~~L~~L~l~~c~~~  322 (347)
                      +   +...++|++|++++|...
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHhCCCCCEEeccCCCCC
Confidence            4   456799999999998543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.50  E-value=1.5e-07  Score=76.00  Aligned_cols=84  Identities=18%  Similarity=0.089  Sum_probs=56.6

Q ss_pred             cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch--h----hhccCcc
Q 019031          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG--K----IKISSNQ  331 (347)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~----~~~~~~~  331 (347)
                      .+++|+.|+++++.........+..+++|+.|+++++.+..-.....+..+++|+.|++++++...  .    +...+++
T Consensus        62 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~  141 (176)
T 1a9n_A           62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ  141 (176)
T ss_dssp             CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCc
Confidence            456667777664433221111236789999999999988653222256789999999999985322  2    3457789


Q ss_pred             cceEeccccc
Q 019031          332 LKNLLFRSCK  341 (347)
Q Consensus       332 L~~L~l~~c~  341 (347)
                      |+.|++.++.
T Consensus       142 L~~Ld~~~n~  151 (176)
T 1a9n_A          142 VRVLDFQKVK  151 (176)
T ss_dssp             CSEETTEECC
T ss_pred             cceeCCCcCC
Confidence            9999987764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.50  E-value=8.8e-08  Score=86.75  Aligned_cols=166  Identities=15%  Similarity=0.072  Sum_probs=109.1

Q ss_pred             cEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHh-cCCCccEEEeeccCCCCcc---ccccCCCceEEEccc
Q 019031          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRS  247 (347)
Q Consensus       172 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~-~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~  247 (347)
                      +.++++++.+...+ ..-.+.++.|+|+++.++.-... .+. ++++|+.|++.++.. ..+   .+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~iP-~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVP-QSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCC-SSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccC-ccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCC
Confidence            57777777665432 22345799999999988432222 233 799999999998853 332   355689999999999


Q ss_pred             cc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHH---ccCCCCCEEeecCcCCc
Q 019031          248 FS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLI---SKFPSLEDLFVTRCCLP  322 (347)
Q Consensus       248 ~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~~  322 (347)
                      +. ..+. .....+++|+.|+++++.........+..+++|+.|+|+++.++.-.. ..+   ..+++|+.|+++++...
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCC
Confidence            86 2222 223467999999999655533323356789999999999888765211 122   56899999999987432


Q ss_pred             h---hhhccCcc--cceEeccccc
Q 019031          323 G---KIKISSNQ--LKNLLFRSCK  341 (347)
Q Consensus       323 ~---~~~~~~~~--L~~L~l~~c~  341 (347)
                      .   ......+.  |+.|++.+.+
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             ccCHHHhhhccHhhcceEEecCCC
Confidence            2   11223343  4778877644

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.50  E-value=4.7e-08  Score=94.89  Aligned_cols=149  Identities=17%  Similarity=0.073  Sum_probs=100.5

Q ss_pred             ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEE
Q 019031          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIM  243 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L  243 (347)
                      +++++|+|+++.+....  ...++++|++|+|+++.+..-. ...+.++++|+.|+|.+|. +..+   .+.++++|+.|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEE
Confidence            47999999998865332  4678999999999999773211 1236779999999999985 4433   34578999999


Q ss_pred             Eccccc-cchhhh-hhcCCCccEEEeeeeCCCC-CceeeccCCCCCcEEEeeccccCc---hHHHHHHccCCCCCEEeec
Q 019031          244 EIRSFS-EEIEIV-EISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFAD---NEFNHLISKFPSLEDLFVT  317 (347)
Q Consensus       244 ~l~~~~-~~~~~~-~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~~~L~~L~l~  317 (347)
                      ++.++. ..+... ...+++|++|+++++.... .....++.+++|+.|+++++.++.   ..+..+...-.....+++.
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence            999986 222222 2367899999998554432 223445778999999998887654   2333332222334456666


Q ss_pred             Cc
Q 019031          318 RC  319 (347)
Q Consensus       318 ~c  319 (347)
                      ..
T Consensus       210 ~n  211 (635)
T 4g8a_A          210 LN  211 (635)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.49  E-value=3.8e-07  Score=76.98  Aligned_cols=145  Identities=12%  Similarity=0.040  Sum_probs=101.1

Q ss_pred             ccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc---cccCCCceEEEccc
Q 019031          171 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRS  247 (347)
Q Consensus       171 L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~---~~~~~~L~~L~l~~  247 (347)
                      -+.++.++..+...+ ..-.++|++|+|+++.+..-. ...+.++++|+.|++.++.. ..+.   +..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVP-AGIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCC-SCCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccC-CCCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence            455666666554332 233489999999999884321 13367799999999999864 3332   35679999999999


Q ss_pred             cc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031          248 FS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       248 ~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      +. ..+.. ....+++|+.|.++.+... ..+..+..+++|+.|+++++.++... ...+..+++|+.|++.+++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCC
Confidence            86 22222 2236899999999865543 33344578899999999988877421 2456778999999998753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.48  E-value=2.2e-07  Score=89.01  Aligned_cols=157  Identities=16%  Similarity=0.072  Sum_probs=107.0

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .+++.|+  +..+.-.  .+|   ..+++|++|++++|.+...+.  -..+|++|+|+++.++.  +..   .+++|+.|
T Consensus        80 ~~L~~L~--Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L  145 (571)
T 3cvr_A           80 PQITVLE--ITQNALI--SLP---ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLTM--LPE---LPALLEYI  145 (571)
T ss_dssp             TTCSEEE--CCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEE
T ss_pred             CCCCEEE--CcCCCCc--ccc---cccCCCCEEEccCCCCCCcch--hhcCCCEEECCCCcCCC--CCC---cCccccEE
Confidence            5788888  6443222  444   236899999999998765322  22399999999998843  222   68999999


Q ss_pred             EeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCC-------cEEEeec
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL-------KKLDLVS  293 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~L~~  293 (347)
                      ++.+|.. ..+.. .+++|+.|++++|. ..+..  +. ++|+.|+++++.... .+. +..  +|       +.|++++
T Consensus       146 ~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          146 NADNNQL-TMLPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             ECCSSCC-SCCCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCS
T ss_pred             eCCCCcc-CcCCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCC
Confidence            9998863 33333 46899999999986 22333  22 899999999655542 222 222  66       9999999


Q ss_pred             cccCchHHHHHHccCCCCCEEeecCcCCch
Q 019031          294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG  323 (347)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  323 (347)
                      +.++.  +...+..+++|+.|++++++...
T Consensus       217 N~l~~--lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          217 NRITH--IPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             SCCCC--CCGGGGGSCTTEEEECCSSSCCH
T ss_pred             Cccee--cCHHHhcCCCCCEEEeeCCcCCC
Confidence            88874  34434459999999999986544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.44  E-value=3.5e-07  Score=82.36  Aligned_cols=54  Identities=11%  Similarity=0.009  Sum_probs=26.7

Q ss_pred             ccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhhh--ccCcccceEec
Q 019031          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK--ISSNQLKNLLF  337 (347)
Q Consensus       280 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l  337 (347)
                      +..+++|+.|+++++.++.  +..  ..+.+|+.|.+..+..+..+.  ..+++|+.+++
T Consensus       198 f~~l~~L~~LdLs~N~l~~--lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l  253 (350)
T 4ay9_X          198 FHGASGPVILDISRTRIHS--LPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASL  253 (350)
T ss_dssp             TTTEECCSEEECTTSCCCC--CCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred             hccCcccchhhcCCCCcCc--cCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence            3455666666666655543  111  234556666655554443332  23445555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.37  E-value=2.7e-07  Score=83.14  Aligned_cols=195  Identities=15%  Similarity=0.044  Sum_probs=112.5

Q ss_pred             cCceEEEeeeecCCcccccccccc-cccccccEEEEeeeeccC---CCCcCCCCCcCEEE-eeeeeeChHHHHHHHhcCC
Q 019031          142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQ---PFDSIMLCSLKKLT-LERVCLDEQMVQKLASECP  216 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~l~~---~~~~~~~~~L~~L~-L~~~~~~~~~l~~i~~~cp  216 (347)
                      .++++|+  +....  -..++... ..+++|++|+|++|.+..   .....++++|+++. +..+.+..- ....+.+++
T Consensus        30 ~~l~~L~--Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELR--FVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLP  104 (350)
T ss_dssp             TTCSEEE--EESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCT
T ss_pred             CCCCEEE--ccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcc
Confidence            4788888  54332  23455443 457889999998887432   12345677766544 344433211 012356788


Q ss_pred             CccEEEeeccCCCC--ccccccCCCceEEEccccccchhhhh----h-cCCCccEEEeeeeCCCCCceeeccCCCCCcEE
Q 019031          217 LLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIVE----I-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKL  289 (347)
Q Consensus       217 ~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  289 (347)
                      +|+.|++.++....  .....+..++..|.+.++. .+..+.    . ....++.|.++.+.... .........+|+.|
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l  182 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDEL  182 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEE
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccC-CChhhccccchhHH
Confidence            89999998875322  1222233577778777654 333222    1 23467888887544421 11112234678888


Q ss_pred             Eeec-cccCchHHHHHHccCCCCCEEeecCcCCchhhh-ccCcccceEecccccCccc
Q 019031          290 DLVS-VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLKL  345 (347)
Q Consensus       290 ~L~~-~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~L~~L~l~~c~~l~~  345 (347)
                      ++.+ +.++. .-...+..+++|+.|+++++. +..+. ..+.+|++|.+.++.++++
T Consensus       183 ~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          183 NLSDNNNLEE-LPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKK  238 (350)
T ss_dssp             ECTTCTTCCC-CCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCC
T ss_pred             hhccCCcccC-CCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCc
Confidence            8854 33332 122456778999999999874 33332 3466888888888877764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.25  E-value=7.4e-07  Score=73.01  Aligned_cols=107  Identities=18%  Similarity=0.077  Sum_probs=51.9

Q ss_pred             CcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc--cccccCCCceEEEccccc-cchhh-hhhcCCCccEEEe
Q 019031          192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTL  267 (347)
Q Consensus       192 ~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l  267 (347)
                      +|++|+++++.++.-.....+..+++|+.|++.++.....  -.+.++++|+.|+++++. ..+.. ....+++|++|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            4555555555442111111234455555555555432111  123344566666666554 11111 1124566666666


Q ss_pred             eeeCCCCCceeeccCCCCCcEEEeeccccCc
Q 019031          268 LFYGARRPRVVEVARSPHLKKLDLVSVYFAD  298 (347)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  298 (347)
                      +++.........+..+++|+.|++.++.+..
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            6443332222345677888888888777663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.20  E-value=1.1e-06  Score=84.41  Aligned_cols=120  Identities=18%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             CCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc--ccccCCCceEEEccccc-cchhhhhhcCCCccEEEe
Q 019031          191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTL  267 (347)
Q Consensus       191 ~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l  267 (347)
                      ..|+.|+|+++.++.  +.. +..+++|+.|++++|.. ..+  .+..+++|+.|+++++. ..+. ....+++|+.|++
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL  515 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred             cCceEEEecCCCCCC--CcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence            358899999888743  233 67889999999988753 232  34567788888888775 2222 1224566666666


Q ss_pred             eeeCCCCCc-eeeccCCCCCcEEEeeccccCch--HHHHHHccCCCCCEEe
Q 019031          268 LFYGARRPR-VVEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLF  315 (347)
Q Consensus       268 ~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~  315 (347)
                      +.+...... +..++.+++|+.|+++++.++..  ....+...+|+|+.|+
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            543332221 33445566666666665554431  1223344456666554

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.20  E-value=7.2e-07  Score=77.24  Aligned_cols=38  Identities=21%  Similarity=0.527  Sum_probs=34.9

Q ss_pred             cccccCCchHHHHHHhcCCChhhhh-hhcccchhhHhhh
Q 019031           17 MDRISELPTFIIHHLMSYLSAKEVA-RTSVLSKKWNQLY   54 (347)
Q Consensus        17 ~d~is~LPddiL~~Ils~L~~~~~~-~~s~vskrW~~l~   54 (347)
                      ...+..||+|++.+||++||.++++ ++++|||+|+.+.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~   86 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV   86 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence            3578899999999999999999999 9999999999763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.18  E-value=2.8e-06  Score=68.47  Aligned_cols=106  Identities=20%  Similarity=0.125  Sum_probs=53.4

Q ss_pred             CCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEEEccccc-cchhh-hhhcCCCccEE
Q 019031          191 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQL  265 (347)
Q Consensus       191 ~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L  265 (347)
                      ++|++|+++++.+..- ....+..+++|+.|++.++.. ..+   .+..+++|+.|+++++. ..+.. ....+++|++|
T Consensus        28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence            4555565555554211 111234456666666655532 211   12345666666666654 11111 11245667777


Q ss_pred             EeeeeCCCCCceeeccCCCCCcEEEeeccccCc
Q 019031          266 TLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD  298 (347)
Q Consensus       266 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  298 (347)
                      +++.+.........+..+++|+.|++.++.+..
T Consensus       106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            766443332222224567888888888777654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.16  E-value=4.2e-07  Score=77.85  Aligned_cols=34  Identities=21%  Similarity=0.496  Sum_probs=32.2

Q ss_pred             cccCCchHHHHHHhcCCChhhhhhhcccchhhHh
Q 019031           19 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQ   52 (347)
Q Consensus        19 ~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~   52 (347)
                      -|+.||+||+.+||+||+.+|+++++.|||+||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999995

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.14  E-value=3.2e-06  Score=69.28  Aligned_cols=123  Identities=16%  Similarity=-0.032  Sum_probs=70.2

Q ss_pred             cEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccc
Q 019031          172 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS  249 (347)
Q Consensus       172 ~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~  249 (347)
                      +.++++++.+...+ ..-.++|++|+|+++.++.  +...+.++++|+.|++.++....  .-.+.++++|+.|+++++.
T Consensus        13 ~~l~~~~~~l~~ip-~~~~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP-KGIPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCC-SCCCTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCC-CCCCCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            44555555444322 1223567777777776631  11235667777777777764321  1224456778888887765


Q ss_pred             -cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031          250 -EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       250 -~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (347)
                       ..+.. ....+++|+.|+++++.........+..+++|+.|++.++.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence             12211 1235677888888754443222223567888999999777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.12  E-value=6.6e-06  Score=78.88  Aligned_cols=118  Identities=12%  Similarity=0.025  Sum_probs=72.6

Q ss_pred             CccEEEeeccCCCCccccccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccc
Q 019031          217 LLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  295 (347)
Q Consensus       217 ~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~  295 (347)
                      .|+.|+++++....--.+..+++|+.|+++++. ..+......+++|+.|+++.+.... .+ .++.+++|+.|+++++.
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCC
Confidence            577777777643221125556788888888775 2222223467788888887554433 22 56778888888887777


Q ss_pred             cCchHHHHHHccCCCCCEEeecCcCCch------hhhccCcccceEe
Q 019031          296 FADNEFNHLISKFPSLEDLFVTRCCLPG------KIKISSNQLKNLL  336 (347)
Q Consensus       296 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~~~~~~~~L~~L~  336 (347)
                      +++...+..+..+++|+.|++++++...      .+...+|+|+.|+
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            7653213445678888888888763221      2233467777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.03  E-value=1.3e-05  Score=64.43  Aligned_cols=122  Identities=12%  Similarity=0.043  Sum_probs=78.1

Q ss_pred             cCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEEEccccc-cchhh-hhhcCCCccEEEe
Q 019031          193 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTL  267 (347)
Q Consensus       193 L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l  267 (347)
                      .+.++++++.+..-.    ....++|+.|++.++.. ..+   .+..+++|+.|+++++. ..+.. ....+++|+.|++
T Consensus         9 ~~~l~~~~~~l~~~p----~~~~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP----TGIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCSSCC----TTCCTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCccCC----CCCCCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            456666666552111    12347899999988753 222   23557899999999875 22221 1236788999999


Q ss_pred             eeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031          268 LFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      +++.........+..+++|+.|+++++.++.. ....+..+++|+.|++++++
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence            86555433333356788999999988877642 22345668899999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.98  E-value=2.1e-06  Score=79.85  Aligned_cols=42  Identities=24%  Similarity=0.460  Sum_probs=37.8

Q ss_pred             cccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhcc
Q 019031           15 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS   56 (347)
Q Consensus        15 ~~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~   56 (347)
                      -..|.|+.||+|++.+||+||+.++++++++|||+|+++...
T Consensus        10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            356999999999999999999999999999999999975443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.97  E-value=3.6e-06  Score=83.21  Aligned_cols=110  Identities=11%  Similarity=0.010  Sum_probs=71.9

Q ss_pred             CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc--ccccCCCceEEEccccc-cchhhhhhcCCCc
Q 019031          186 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSL  262 (347)
Q Consensus       186 ~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~p~L  262 (347)
                      ....+++|+.|+|+++.+..  +..-+..+++|+.|+|.+|... .+  .+..+++|+.|+++++. ..+......+++|
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL  295 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred             hhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence            45677889999998887731  1111346888999998887532 32  24567888899888886 2222222467888


Q ss_pred             cEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCch
Q 019031          263 QQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (347)
Q Consensus       263 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  299 (347)
                      ++|.++.+... ..+..++.+++|+.|+|+++.++..
T Consensus       296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC
Confidence            88888855443 3333467888888888888887753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.96  E-value=9.8e-06  Score=72.17  Aligned_cols=97  Identities=11%  Similarity=-0.022  Sum_probs=58.2

Q ss_pred             CCCceEEEccccc-cchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCc-EEEeeccccCchHHHHHHccCCCCCE
Q 019031          237 ASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLK-KLDLVSVYFADNEFNHLISKFPSLED  313 (347)
Q Consensus       237 ~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~  313 (347)
                      +++|+.|++.++. ..+.. ....+++|+++.+.. +...-..-.+.+|++|+ .+.+.. .++.- -...+.+|++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~-ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH-NLKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc-ccceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCccCCE
Confidence            6889999998763 22322 223678899998873 22111222467788898 999865 33221 1245677899999


Q ss_pred             EeecCcC--Cc-hhhhccCcccceEe
Q 019031          314 LFVTRCC--LP-GKIKISSNQLKNLL  336 (347)
Q Consensus       314 L~l~~c~--~~-~~~~~~~~~L~~L~  336 (347)
                      +++....  .+ ......+++|+.+.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEeCCCccCccchhhhcCCcchhhhc
Confidence            9986531  11 22344566777664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.95  E-value=2.5e-05  Score=63.83  Aligned_cols=120  Identities=12%  Similarity=0.040  Sum_probs=75.7

Q ss_pred             CEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc--ccccCCCceEEEccccc-cchh-hhhhcCCCccEEEeee
Q 019031          194 KKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLF  269 (347)
Q Consensus       194 ~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~--~~~~~~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~  269 (347)
                      +.++++++.+..  +..  .-.+.|+.|++.++.. ..+  .+.++++|+.|+++++. ..+. .....+++|++|++++
T Consensus        13 ~~l~~~~~~l~~--ip~--~~~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKV--LPK--GIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSS--CCS--CCCTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCc--CCC--CCCCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            456666655421  000  1236789999987753 222  34567889999998875 2222 1223678889998885


Q ss_pred             eCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          270 YGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       270 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      +.........+..+++|+.|+|.++.++.- ....+..+++|+.|+++++
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSS
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCC
Confidence            554433333467788899999988877642 1234566888899988874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=1.3e-05  Score=71.40  Aligned_cols=76  Identities=17%  Similarity=0.107  Sum_probs=51.4

Q ss_pred             cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCC-EEeecCcCCch----hhhccCccc
Q 019031          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE-DLFVTRCCLPG----KIKISSNQL  332 (347)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~~~----~~~~~~~~L  332 (347)
                      .+++|+++++..+....-....+.+|++|+.+++..+ +.. .-...+.+|++|+ .+.+..  .+.    .....|++|
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence            4889999999844343323334678999999999665 332 1124567899999 999976  333    234467788


Q ss_pred             ceEec
Q 019031          333 KNLLF  337 (347)
Q Consensus       333 ~~L~l  337 (347)
                      +.+++
T Consensus       300 ~~l~l  304 (329)
T 3sb4_A          300 RYVLA  304 (329)
T ss_dssp             EEEEE
T ss_pred             CEEEe
Confidence            88877

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.90  E-value=2.7e-05  Score=63.20  Aligned_cols=62  Identities=15%  Similarity=0.034  Sum_probs=37.6

Q ss_pred             CCCccEEEeeeeCCCCC----ceeeccCCCCCcEEEe--eccccCchHH---HHHHccCCCCCEEeecCcC
Q 019031          259 VPSLQQLTLLFYGARRP----RVVEVARSPHLKKLDL--VSVYFADNEF---NHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       259 ~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~L--~~~~~~~~~~---~~~~~~~~~L~~L~l~~c~  320 (347)
                      .++|++|+++++.....    ....+...+.|++|+|  .++.+.+...   ...+...++|+.|++++|.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            34555555553333221    1112355677888888  7788887653   3445566889999988874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.90  E-value=1.8e-05  Score=64.65  Aligned_cols=103  Identities=14%  Similarity=0.016  Sum_probs=74.5

Q ss_pred             CCccEEEeeccCCCCcc---ccccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEE
Q 019031          216 PLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLD  290 (347)
Q Consensus       216 p~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  290 (347)
                      +.|+.|++.++......   .+..+++|+.|+++++. ..+ ......+++|+.|+++++.........+..+++|+.|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            48999999988542211   25568999999999986 222 22234679999999996555433333467889999999


Q ss_pred             eeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          291 LVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       291 L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ++++.++.. ....+..+++|+.|+++++
T Consensus       109 L~~N~l~~~-~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          109 LYDNQISCV-MPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCSSCCCEE-CTTSSTTCTTCCEEECTTC
T ss_pred             CCCCcCCee-CHHHhhcCCCCCEEEeCCC
Confidence            999988753 2334567899999999876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.88  E-value=8e-06  Score=80.71  Aligned_cols=108  Identities=14%  Similarity=-0.037  Sum_probs=67.7

Q ss_pred             cccccccccccEEEEeeeeccCCC-CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc--ccccCC
Q 019031          162 PQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKAS  238 (347)
Q Consensus       162 ~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~--~~~~~~  238 (347)
                      +..+..+++|+.|+|+++.+.... ....+++|++|+|+++.++  .+..-+.++++|+.|+|++|.. ..+  .+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcC-CccChhhcCCC
Confidence            334455678888888887765332 3457788888888888774  2223356788888888887753 232  244567


Q ss_pred             CceEEEccccc-cchhhhhhcCCCccEEEeeeeCC
Q 019031          239 KLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGA  272 (347)
Q Consensus       239 ~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~  272 (347)
                      +|+.|+++++. ..+......+++|+.|+++++..
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence            88888888775 22222223667888888875444

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.82  E-value=1e-05  Score=74.79  Aligned_cols=41  Identities=24%  Similarity=0.391  Sum_probs=37.4

Q ss_pred             cccccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhh
Q 019031           13 TVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (347)
Q Consensus        13 ~~~~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l   53 (347)
                      +....|.++.||+|++.+||+||+.+++++++.|||+|+.+
T Consensus        12 ~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           12 PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            34467999999999999999999999999999999999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.74  E-value=7.5e-06  Score=75.62  Aligned_cols=38  Identities=32%  Similarity=0.628  Sum_probs=35.6

Q ss_pred             cccccccCCchH----HHHHHhcCCChhhhhhhcccchhhHh
Q 019031           15 VAMDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQ   52 (347)
Q Consensus        15 ~~~d~is~LPdd----iL~~Ils~L~~~~~~~~s~vskrW~~   52 (347)
                      -..|.|+.||+|    |+.+||+||+.++++++++|||+|++
T Consensus         6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            356999999999    99999999999999999999999984

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.58  E-value=6.2e-05  Score=61.05  Aligned_cols=37  Identities=14%  Similarity=0.089  Sum_probs=17.9

Q ss_pred             CCCcCEEEeeeeeeChHHHHHH---HhcCCCccEEEeecc
Q 019031          190 LCSLKKLTLERVCLDEQMVQKL---ASECPLLEDLCFSNC  226 (347)
Q Consensus       190 ~~~L~~L~L~~~~~~~~~l~~i---~~~cp~Le~L~l~~c  226 (347)
                      .++|++|+|+++.+++.+...+   +..++.|++|+|.+|
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            4455555555555544433322   233455555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.51  E-value=0.00028  Score=64.50  Aligned_cols=55  Identities=9%  Similarity=0.092  Sum_probs=26.4

Q ss_pred             ccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchh----hhccCcccceEeccc
Q 019031          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQLKNLLFRS  339 (347)
Q Consensus       280 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~L~~L~l~~  339 (347)
                      +.+|++|+.+.+... +..- -...+.+|++|+.+.+..  .+..    ....+ +|+.+.+.+
T Consensus       296 F~~c~~L~~l~l~~~-i~~I-~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~  354 (401)
T 4fdw_A          296 LEGCPKLARFEIPES-IRIL-GQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG  354 (401)
T ss_dssp             TTTCTTCCEECCCTT-CCEE-CTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC
T ss_pred             hhCCccCCeEEeCCc-eEEE-hhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC
Confidence            455666666666421 2110 012345566666666644  2222    22344 677766654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.45  E-value=0.00015  Score=57.91  Aligned_cols=80  Identities=13%  Similarity=-0.007  Sum_probs=44.5

Q ss_pred             ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEE
Q 019031          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME  244 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~  244 (347)
                      ++|+.|+|+++.+....  ...++++|++|+|+++.+..- ....+.++++|+.|++.++....  .-.+..+++|+.|+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            56777777777655432  345667777777777766311 11224556677777776664211  11233456666666


Q ss_pred             ccccc
Q 019031          245 IRSFS  249 (347)
Q Consensus       245 l~~~~  249 (347)
                      +.++.
T Consensus       109 L~~N~  113 (170)
T 3g39_A          109 LLNNP  113 (170)
T ss_dssp             CCSSC
T ss_pred             eCCCC
Confidence            66553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.41  E-value=0.00018  Score=57.60  Aligned_cols=80  Identities=11%  Similarity=-0.014  Sum_probs=39.5

Q ss_pred             ccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEE
Q 019031          169 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME  244 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~  244 (347)
                      ++|+.|+|+++.+....  ....+++|++|+|+++.+..- ...++.++++|+.|++.++....  .-.+..+++|+.|+
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY  111 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence            56666666666654332  344566666666666655211 01123455666666665553211  11123345555555


Q ss_pred             ccccc
Q 019031          245 IRSFS  249 (347)
Q Consensus       245 l~~~~  249 (347)
                      +.++.
T Consensus       112 L~~N~  116 (174)
T 2r9u_A          112 LYNNP  116 (174)
T ss_dssp             CCSSC
T ss_pred             eCCCC
Confidence            55543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.38  E-value=0.0002  Score=57.08  Aligned_cols=100  Identities=11%  Similarity=0.009  Sum_probs=66.1

Q ss_pred             ccEEEeeccCCCCccccccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccc
Q 019031          218 LEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  295 (347)
Q Consensus       218 Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~  295 (347)
                      .+.+++.++. +..+...-.++|+.|+++++. ..+ ......+++|+.|+++.+.........+..+++|+.|+|+++.
T Consensus        11 ~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           11 GTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            4667766553 333332223789999999886 222 2223467899999998655543333335778999999998888


Q ss_pred             cCchHHHHHHccCCCCCEEeecCc
Q 019031          296 FADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       296 ~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ++.- ....+..+++|+.|+++++
T Consensus        90 l~~~-~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           90 LKSI-PRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             cCEe-CHHHhcCCCCCCEEEeCCC
Confidence            7642 1234667899999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.27  E-value=0.00038  Score=55.69  Aligned_cols=100  Identities=13%  Similarity=0.023  Sum_probs=64.8

Q ss_pred             cEEEeeccCCCCccccccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeecccc
Q 019031          219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  296 (347)
Q Consensus       219 e~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  296 (347)
                      ..+++.++. +..+...-.++|+.|+++++. ..+ ......+++|+.|+++.+.........+..+++|+.|+|+++.+
T Consensus        15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            455555543 333322223789999999886 222 22234678999999986555432222357789999999988887


Q ss_pred             CchHHHHHHccCCCCCEEeecCcC
Q 019031          297 ADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      +.- ....+..+++|+.|++++++
T Consensus        94 ~~l-~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           94 KSI-PRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCC-CTTTTTTCTTCSEEECCSSC
T ss_pred             cee-CHHHhccccCCCEEEeCCCC
Confidence            642 12346678999999998763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.26  E-value=0.00031  Score=64.21  Aligned_cols=37  Identities=5%  Similarity=0.077  Sum_probs=16.6

Q ss_pred             ccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       280 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      +.+|++|+.+.|..+ ++.- -...+.++ +|+.+.+...
T Consensus       319 F~~c~~L~~l~lp~~-l~~I-~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          319 LGGNRKVTQLTIPAN-VTQI-NFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TTTCCSCCEEEECTT-CCEE-CTTSSSSS-CCCEEEECCS
T ss_pred             hcCCCCccEEEECcc-ccEE-cHHhCCCC-CCCEEEEcCC
Confidence            345566666666322 1110 01223445 5666666553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.47  E-value=0.0025  Score=56.75  Aligned_cols=88  Identities=20%  Similarity=0.110  Sum_probs=59.7

Q ss_pred             cccccccccccccccEEEEee-eeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc-
Q 019031          158 VYTLPQAIFSANSVTNLRLVW-CRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-  233 (347)
Q Consensus       158 ~~~l~~~~~~~~~L~~L~L~~-~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~-  233 (347)
                      ...+|. +...++|+.|+|++ +.+....  ...++++|+.|+|+++.+..-. ...+.++++|+.|+|.++.. ..+. 
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l-~~~~~   97 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNAL-ESLSW   97 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCC-SCCCS
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCcc-ceeCH
Confidence            345666 66778899999986 7655332  3567899999999998873221 22357789999999988753 3222 


Q ss_pred             --cccCCCceEEEccccc
Q 019031          234 --VSKASKLKIMEIRSFS  249 (347)
Q Consensus       234 --~~~~~~L~~L~l~~~~  249 (347)
                        +..+ +|+.|.+.++.
T Consensus        98 ~~~~~~-~L~~l~l~~N~  114 (347)
T 2ifg_A           98 KTVQGL-SLQELVLSGNP  114 (347)
T ss_dssp             TTTCSC-CCCEEECCSSC
T ss_pred             HHcccC-CceEEEeeCCC
Confidence              2222 48889888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.38  E-value=0.0019  Score=55.30  Aligned_cols=37  Identities=22%  Similarity=0.209  Sum_probs=14.6

Q ss_pred             CCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeecc
Q 019031          190 LCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNC  226 (347)
Q Consensus       190 ~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c  226 (347)
                      +|+|++|+|+++.+ +-..+...+..+|+|+.|+|+++
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence            34444444444444 21222223334444444444433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.22  E-value=0.0058  Score=52.26  Aligned_cols=32  Identities=25%  Similarity=0.256  Sum_probs=17.7

Q ss_pred             CCcEEEeeccccCc------hHHHHHHccCCCCCEEee
Q 019031          285 HLKKLDLVSVYFAD------NEFNHLISKFPSLEDLFV  316 (347)
Q Consensus       285 ~L~~L~L~~~~~~~------~~~~~~~~~~~~L~~L~l  316 (347)
                      +|+.|+|.++.+..      .-...++..+|+|+.|+=
T Consensus       221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            56666666555542      122345566677766653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.19  E-value=0.0085  Score=53.23  Aligned_cols=73  Identities=15%  Similarity=0.073  Sum_probs=35.3

Q ss_pred             EEEeee-eccCCCCcCCCCCcCEEEeee-eeeChHHHHHHHhcCCCccEEEeeccCCCCcc---ccccCCCceEEEcccc
Q 019031          174 LRLVWC-RLEQPFDSIMLCSLKKLTLER-VCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSF  248 (347)
Q Consensus       174 L~L~~~-~l~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~  248 (347)
                      +++++. .+...+....+++|++|+|++ +.+..-. ...+.++++|+.|+|.++. +..+   .+.++++|+.|+++++
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC
Confidence            455544 333221244556677777764 5542111 1124456666666666653 2221   2234555666655554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.45  E-value=0.027  Score=51.04  Aligned_cols=54  Identities=17%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             ccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhh----hccCcccceEec
Q 019031          280 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI----KISSNQLKNLLF  337 (347)
Q Consensus       280 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~L~~L~l  337 (347)
                      +..+.+|+.+.+... +..- -...+.+|.+|+.+.+..  .+..+    ...|.+|+.+.+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~l  350 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINF  350 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECC
T ss_pred             ccccccccccccccc-ccee-chhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEE
Confidence            356778888887432 2110 012356788888888854  23222    335567777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.84  E-value=0.052  Score=49.11  Aligned_cols=146  Identities=12%  Similarity=0.051  Sum_probs=80.3

Q ss_pred             ccccccccEEEEeeeec-cCCCCcCCCCCcCEEEeeeeee--ChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCce
Q 019031          165 IFSANSVTNLRLVWCRL-EQPFDSIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLK  241 (347)
Q Consensus       165 ~~~~~~L~~L~L~~~~l-~~~~~~~~~~~L~~L~L~~~~~--~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~  241 (347)
                      .+.+.+|+.+.+..... .......++.+|+.+.+.....  ...    .+..|+.++.+...... +.......+.+|+
T Consensus       226 ~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~  300 (394)
T 4fs7_A          226 ALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGSVI-VPEKTFYGCSSLT  300 (394)
T ss_dssp             TTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECSSE-ECTTTTTTCTTCC
T ss_pred             hcccCCCceEEECCCceecccccccccccceeEEcCCCcceeecc----ccccccccceeccCcee-ecccccccccccc
Confidence            34567788887765321 1112456778888887754422  222    24567777777664332 2223344567777


Q ss_pred             EEEccccccchhhhh-hcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecC
Q 019031          242 IMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (347)
Q Consensus       242 ~L~l~~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (347)
                      .+.+......+..-. ..+.+|+++.+.. ....-..-.+.+|.+|+.+.+..+ ++.- -...+.+|++|+.+.+..
T Consensus       301 ~i~l~~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          301 EVKLLDSVKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKI-GANAFQGCINLKKVELPK  375 (394)
T ss_dssp             EEEECTTCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTBTTCTTCCEEEEEG
T ss_pred             ccccccccceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEe-hHHHhhCCCCCCEEEECC
Confidence            777764332222222 3567788877751 111111123567888888888533 2210 113456788888888865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.57  E-value=0.065  Score=48.45  Aligned_cols=121  Identities=14%  Similarity=0.123  Sum_probs=59.0

Q ss_pred             HhcCCCccEEEeeccC-CCCccccccCCCceEEEccccccchhhh-hhcCCCccEEEeeeeCCCCCceeeccCCCCCcEE
Q 019031          212 ASECPLLEDLCFSNCW-GLKHLCVSKASKLKIMEIRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKL  289 (347)
Q Consensus       212 ~~~cp~Le~L~l~~c~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  289 (347)
                      +.+|..|+.+.+.... .+..-...++++|+.+.+......+..- -..|++|+++.+.. +...-..-.+.+|.+|+.+
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEE
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEE
Confidence            4567777777664321 1222333456777777775432122222 23567777777751 1111111235667788888


Q ss_pred             Eeecc--ccCchHHHHHHccCCCCCEEeecCcCCchhhhccCcccceEec
Q 019031          290 DLVSV--YFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLF  337 (347)
Q Consensus       290 ~L~~~--~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l  337 (347)
                      .|..+  .+..    ..+.+|++|+.+++.+..........+.+|+.+.+
T Consensus       340 ~ip~sv~~I~~----~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          340 AIPSSVTKIPE----SAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPV  385 (394)
T ss_dssp             EECTTCCBCCG----GGGTTCTTCCEEEESSCHHHHHTCBCCCCC-----
T ss_pred             EECcccCEEhH----hHhhCCCCCCEEEECCceeehhhhhccCCCCEEEe
Confidence            87422  1222    34567788888887763211112234456666655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.24  E-value=0.1  Score=42.22  Aligned_cols=114  Identities=10%  Similarity=0.071  Sum_probs=55.9

Q ss_pred             HHHHHHHhcCCCccEEEeeccCCCCcc-------ccccCCCceEEEccccc---cchhhh---hhcCCCccEEEeeeeCC
Q 019031          206 QMVQKLASECPLLEDLCFSNCWGLKHL-------CVSKASKLKIMEIRSFS---EEIEIV---EISVPSLQQLTLLFYGA  272 (347)
Q Consensus       206 ~~l~~i~~~cp~Le~L~l~~c~~~~~~-------~~~~~~~L~~L~l~~~~---~~~~~~---~~~~p~L~~L~l~~~~~  272 (347)
                      +.+..++.+-+.|++|+|.++..+...       .+..-.+|+.|.+++|.   .+...+   ...-..|++|+++.+..
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            456666666677777777654222210       01112577888887775   111111   12234567777764333


Q ss_pred             CCCcee----eccCCCCCcEEEeecc---ccCchH---HHHHHccCCCCCEEeecCc
Q 019031          273 RRPRVV----EVARSPHLKKLDLVSV---YFADNE---FNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       273 ~~~~~~----~~~~~~~L~~L~L~~~---~~~~~~---~~~~~~~~~~L~~L~l~~c  319 (347)
                      ......    .+..-+.|+.|+|+++   .+.+..   +.+.+..-+.|+.|+++.+
T Consensus       111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            221111    1233455777777532   334322   3334444566666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.91  E-value=0.16  Score=45.75  Aligned_cols=123  Identities=15%  Similarity=0.133  Sum_probs=73.8

Q ss_pred             cCCCCCcCEEEeeeeee--ChHHHHHHHhcCCCccEEEeecc-CCCCccccccCCCceEEEccccccchhhhh-hcCCCc
Q 019031          187 SIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSL  262 (347)
Q Consensus       187 ~~~~~~L~~L~L~~~~~--~~~~l~~i~~~cp~Le~L~l~~c-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~p~L  262 (347)
                      ..+|.+|+++.+.....  +...    +.+|+.|+.+.+... ..+..-.+.+|.+|+.+.+......+..-. ..|.+|
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGA----FMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred             eeecccccEEecccccceecCcc----cccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence            45678899998854322  3332    567999999998542 123334556788999999975432332222 378999


Q ss_pred             cEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecC
Q 019031          263 QQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (347)
Q Consensus       263 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (347)
                      +++.+.. ....-..-.+.+|++|+.+++.++...    ...+..+.+|+.+.+..
T Consensus       337 ~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          337 ERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC-------
T ss_pred             CEEEECc-ccCEEhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCC
Confidence            9999962 222222335788999999999764321    23345678888887753

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.69  E-value=0.78  Score=36.99  Aligned_cols=16  Identities=6%  Similarity=0.125  Sum_probs=11.6

Q ss_pred             cCCCCCcEEEeecccc
Q 019031          281 ARSPHLKKLDLVSVYF  296 (347)
Q Consensus       281 ~~~~~L~~L~L~~~~~  296 (347)
                      ..-+.|+.|+++.+.+
T Consensus       154 ~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          154 EENESLLRVGISFASM  169 (197)
T ss_dssp             HHCSSCCEEECCCCCH
T ss_pred             HhCCCcCeEeccCCCc
Confidence            4457899999975543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=88.43  E-value=1.1  Score=40.00  Aligned_cols=102  Identities=7%  Similarity=0.052  Sum_probs=50.6

Q ss_pred             HhcCCCccEEEeecc-CCCCccccccCCCceEEEccccccchhh-hhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEE
Q 019031          212 ASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRSFSEEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKL  289 (347)
Q Consensus       212 ~~~cp~Le~L~l~~c-~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  289 (347)
                      +.+|..|+.+.+... ..+......++.+|+.+.+......+.. ....+++|+++.+.......-..-.+.+|.+|+.+
T Consensus       236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             ccCCccceEEEcCCCccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            345677777766432 1122223344566777766543212211 22356777777775222211111234567777777


Q ss_pred             Eeecc--ccCchHHHHHHccCCCCCEEeec
Q 019031          290 DLVSV--YFADNEFNHLISKFPSLEDLFVT  317 (347)
Q Consensus       290 ~L~~~--~~~~~~~~~~~~~~~~L~~L~l~  317 (347)
                      .|...  .+..    ..+.+|.+|+.+.+.
T Consensus       316 ~lp~~l~~I~~----~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          316 TLPTALKTIQV----YAFKNCKALSTISYP  341 (379)
T ss_dssp             ECCTTCCEECT----TTTTTCTTCCCCCCC
T ss_pred             EcCccccEEHH----HHhhCCCCCCEEEEC
Confidence            77322  1222    234567777777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=87.12  E-value=0.85  Score=40.64  Aligned_cols=101  Identities=9%  Similarity=0.008  Sum_probs=56.0

Q ss_pred             ccCCCceEEEccccccchhhh-hhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCE
Q 019031          235 SKASKLKIMEIRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLED  313 (347)
Q Consensus       235 ~~~~~L~~L~l~~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~  313 (347)
                      .++.+|+.+.+-.....+... ...+.+|+.+.+.. .........+..|++|+.+.+..+.++.- -...+.+|.+|+.
T Consensus       237 ~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I-~~~aF~~c~~L~~  314 (379)
T 4h09_A          237 YGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETL-EPRVFMDCVKLSS  314 (379)
T ss_dssp             TTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEE-CTTTTTTCTTCCE
T ss_pred             cCCccceEEEcCCCccEeCccccceeehhccccccc-cceecccccccccccccccccccccccee-hhhhhcCCCCCCE
Confidence            345677777775432122222 23567788887751 11111112357789999999966544321 1134567899999


Q ss_pred             EeecC-cCCc-hhhhccCcccceEec
Q 019031          314 LFVTR-CCLP-GKIKISSNQLKNLLF  337 (347)
Q Consensus       314 L~l~~-c~~~-~~~~~~~~~L~~L~l  337 (347)
                      +.+.. ...+ ......|.+|+.+.+
T Consensus       315 i~lp~~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          315 VTLPTALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred             EEcCccccEEHHHHhhCCCCCCEEEE
Confidence            99854 2211 122335566776665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	347
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	8e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.001
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.004

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 12 ETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53
          E     D IS LP  +  +++S+L  K++ + +   + W  L
Sbjct: 11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 8e-05
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 17 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPIL 60
           D I+ LP  I   + +YL  +++  +  +S+ WN++      L
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 17 MDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQL 53
           D I+ LP      I  +++SYL AK +    ++ K+W ++
Sbjct: 8  RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 21 SELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 53
            LP  ++  + S L   E+ + S + K+W +L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	347
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.26
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.16
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.15
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.01
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.01
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.93
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.76
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.71
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.71
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.7
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.61
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.55
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.13
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.04
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.62
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.59
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.18
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.85
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.94

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.7e-17  Score=141.77  Aligned_cols=176  Identities=20%  Similarity=0.251  Sum_probs=132.2

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLL  218 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~L  218 (347)
                      .++++|+  +..+......+...+..|++|++|++.+|.+....  ....+++|++|+++++.. ++.++..++.+||+|
T Consensus        46 ~~L~~Ld--Ls~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMD--LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEE--CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEE--CCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            4788888  65443334444545567899999999999765332  345789999999999755 889999999999999


Q ss_pred             cEEEeeccCCCCcccc-----ccCCCceEEEccccc-----cchhhhhhcCCCccEEEeeeeCC-CCCceeeccCCCCCc
Q 019031          219 EDLCFSNCWGLKHLCV-----SKASKLKIMEIRSFS-----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLK  287 (347)
Q Consensus       219 e~L~l~~c~~~~~~~~-----~~~~~L~~L~l~~~~-----~~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~  287 (347)
                      ++|++++|..+....+     ..+++|++|.+.+|.     ..+..+...+|+|++|+++++.. .+.....+..+++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            9999999987654221     235899999999874     23444556789999999986543 333444567899999


Q ss_pred             EEEeec-cccCchHHHHHHccCCCCCEEeecCcC
Q 019031          288 KLDLVS-VYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       288 ~L~L~~-~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      +|++++ ..+++..+.. +..+|+|+.|++.+|-
T Consensus       204 ~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~~  236 (284)
T d2astb2         204 HLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGIV  236 (284)
T ss_dssp             EEECTTCTTCCGGGGGG-GGGCTTCCEEECTTSS
T ss_pred             EEECCCCCCCChHHHHH-HhcCCCCCEEeeeCCC
Confidence            999976 4677776655 4679999999999983

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-14  Score=124.62  Aligned_cols=173  Identities=23%  Similarity=0.285  Sum_probs=128.1

Q ss_pred             cccccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc----cccCC
Q 019031          166 FSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC----VSKAS  238 (347)
Q Consensus       166 ~~~~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~----~~~~~  238 (347)
                      +...+|++|++++|.+....   ....|++|++|+|.++.+++..+..+ ..+|+|+.|++.+|..++...    ..+++
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHH
Confidence            34568999999998865432   45789999999999998888888774 679999999999998876432    24689


Q ss_pred             CceEEEccccc----cchhh-hhhcCCCccEEEeeeeCC--CC-CceeeccCCCCCcEEEeecc-ccCchHHHHHHccCC
Q 019031          239 KLKIMEIRSFS----EEIEI-VEISVPSLQQLTLLFYGA--RR-PRVVEVARSPHLKKLDLVSV-YFADNEFNHLISKFP  309 (347)
Q Consensus       239 ~L~~L~l~~~~----~~~~~-~~~~~p~L~~L~l~~~~~--~~-~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~  309 (347)
                      +|++|++++|.    ..+.. +...+++|++|.++++..  .+ ........+|+|++|+++++ .+++..+..+ ..+|
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l-~~~~  200 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLN  200 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh-cccC
Confidence            99999999986    12222 223568999999984321  11 12223467899999999765 5777665554 5799


Q ss_pred             CCCEEeecCcCCchhh----hccCcccceEecccc
Q 019031          310 SLEDLFVTRCCLPGKI----KISSNQLKNLLFRSC  340 (347)
Q Consensus       310 ~L~~L~l~~c~~~~~~----~~~~~~L~~L~l~~c  340 (347)
                      +|++|++++|..+...    ...+|+|+.|++.+|
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            9999999999655421    235789999999887

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=4e-11  Score=99.53  Aligned_cols=184  Identities=14%  Similarity=0.094  Sum_probs=133.3

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++++|+  +..+...  .+. .+..+++|+.|+++++.+........+++|+++.++++.++.  +.. +.+++.|+.+
T Consensus        41 ~~L~~L~--l~~~~i~--~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l  112 (227)
T d1h6ua2          41 DGITTLS--AFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTL  112 (227)
T ss_dssp             HTCCEEE--CTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEE
T ss_pred             CCcCEEE--CCCCCCC--cch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccccccc
Confidence            5889998  6544322  333 456789999999999987655457889999999999887732  222 5679999999


Q ss_pred             EeeccCCCCccccccCCCceEEEccccccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHH
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  301 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  301 (347)
                      .+.+|.......+...+.++.+.+..+.-........+++|+.|.+..+.....  ..++++++|+.|+++++.+++-  
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l--  188 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--  188 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred             ccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCCC--
Confidence            999887655444555689999999887611111234788999999985444322  2367899999999999888762  


Q ss_pred             HHHHccCCCCCEEeecCcCCchhh--hccCcccceEeccc
Q 019031          302 NHLISKFPSLEDLFVTRCCLPGKI--KISSNQLKNLLFRS  339 (347)
Q Consensus       302 ~~~~~~~~~L~~L~l~~c~~~~~~--~~~~~~L~~L~l~~  339 (347)
                      . .+..+|+|++|++++|. +..+  ...+++|+.|+|++
T Consensus       189 ~-~l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 S-PLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             G-GGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred             h-hhcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEeeC
Confidence            2 25789999999999984 3333  34678899888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=3.8e-11  Score=97.59  Aligned_cols=144  Identities=14%  Similarity=0.062  Sum_probs=68.3

Q ss_pred             ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcccc
Q 019031          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~  248 (347)
                      +++++|++.++.+........+++|++|+++++.+++-.  . +.++++|+.|.+.+|....-..+.++++|+.|.+.++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--c-ccCCccccccccccccccccccccccccccccccccc
Confidence            345555555544433223344555555555555542111  1 3455555555555554322222344555555555555


Q ss_pred             ccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcC
Q 019031          249 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       249 ~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  320 (347)
                      ..........+++|+.|.++++.....  -.+..+++|+.|++.++.+++-  . .+..+++|+.|++++|+
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~-~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         117 QITDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--K-PLANLTTLERLDISSNK  183 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--G-GGTTCTTCCEEECCSSC
T ss_pred             ccccccccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--c-cccCCCCCCEEECCCCC
Confidence            411111112455666666653332211  1245566666666666655542  1 24556666666666653

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.3e-12  Score=74.96  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=33.6

Q ss_pred             ccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhc
Q 019031           20 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV   55 (347)
Q Consensus        20 is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~   55 (347)
                      ++.||+||+.+||+|||.+|++++++|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999998754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=7.5e-11  Score=95.81  Aligned_cols=158  Identities=18%  Similarity=0.138  Sum_probs=117.5

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++++|+  +.......  +. .+..+++|++|++++|.+.......++++|++|.++++.+..-.  . +.+++.|+.|
T Consensus        40 ~~l~~L~--l~~~~i~~--l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L  111 (199)
T d2omxa2          40 DQVTTLQ--ADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGL  111 (199)
T ss_dssp             TTCCEEE--CTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEE
T ss_pred             cCCCEEE--CCCCCCCC--cc-ccccCCCcCcCccccccccCcccccCCccccccccccccccccc--c-cccccccccc
Confidence            5788888  65433222  22 35568999999999998776555788999999999999873211  2 6789999999


Q ss_pred             EeeccCCCCccccccCCCceEEEccccccchhhh--hhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCch
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  299 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  299 (347)
                      ++.+|.......+..+++|+.|.++++.  +..+  ...+++|+.|.+.++.....  ..++++++|+.|+++++.+++-
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSC--CCCCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccccccccchhhhhHHhhhhhhh--hcccccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCCC
Confidence            9998876555556678999999999885  2222  24789999999985544332  1367899999999999988762


Q ss_pred             HHHHHHccCCCCCEE
Q 019031          300 EFNHLISKFPSLEDL  314 (347)
Q Consensus       300 ~~~~~~~~~~~L~~L  314 (347)
                        . .+..+++|+.|
T Consensus       188 --~-~l~~L~~L~~L  199 (199)
T d2omxa2         188 --S-VLAKLTNLESL  199 (199)
T ss_dssp             --G-GGGGCTTCSEE
T ss_pred             --c-cccCCCCCCcC
Confidence              2 35678999876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=1.3e-10  Score=95.21  Aligned_cols=158  Identities=17%  Similarity=0.174  Sum_probs=64.2

Q ss_pred             cccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc-ccccCCCceEEEcccc
Q 019031          170 SVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CVSKASKLKIMEIRSF  248 (347)
Q Consensus       170 ~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~-~~~~~~~L~~L~l~~~  248 (347)
                      +|++|++.++.+....+...+++|++|+|+++.+++-  .. +..+++|+.|++.+|. +..+ .+..+++|+.|.+.++
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l--~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTS
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc--cc-cccCcccccccccccc-ccccccccccccccccccccc
Confidence            3444444444433222233444444444444444211  11 2344445555554443 2211 1233445555555544


Q ss_pred             c-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhh--
Q 019031          249 S-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI--  325 (347)
Q Consensus       249 ~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~--  325 (347)
                      . ..+. ....+++++.+.+..+......  .+..+++|+.+++.++.+++-  .. +..+++|+.|++++|.. ..+  
T Consensus       123 ~~~~~~-~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i--~~-l~~l~~L~~L~Ls~N~i-~~l~~  195 (210)
T d1h6ta2         123 GISDIN-GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHI-SDLRA  195 (210)
T ss_dssp             CCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCC-CBCGG
T ss_pred             cccccc-cccccccccccccccccccccc--ccccccccccccccccccccc--cc-ccCCCCCCEEECCCCCC-CCChh
Confidence            3 1111 1123445555555432222111  223455555555555554431  11 34455555555555421 111  


Q ss_pred             hccCcccceEecc
Q 019031          326 KISSNQLKNLLFR  338 (347)
Q Consensus       326 ~~~~~~L~~L~l~  338 (347)
                      ...+++|+.|+|+
T Consensus       196 l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         196 LAGLKNLDVLELF  208 (210)
T ss_dssp             GTTCTTCSEEEEE
T ss_pred             hcCCCCCCEEEcc
Confidence            1234455555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=1.5e-10  Score=95.91  Aligned_cols=169  Identities=14%  Similarity=0.082  Sum_probs=123.5

Q ss_pred             ccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcc
Q 019031          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIR  246 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~  246 (347)
                      .+.+|+.|++.+|.+........+++|++|+++++.+.+-.  . +..+++|+.+.+.+|....--.+..+++|+.+.+.
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-ccccccccccccccccccccccccccccccccccc
Confidence            36789999999998765545678999999999999884221  1 67899999999998864332235678999999999


Q ss_pred             ccccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhh-
Q 019031          247 SFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-  325 (347)
Q Consensus       247 ~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-  325 (347)
                      ++...-.......+.+..+.+..+....  ...+..+++|+.|++.++.+.+..   .+..+++|+.|++++|.. ..+ 
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~l-~~l~  189 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNKI-SDIS  189 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCC-CCCG
T ss_pred             cccccccchhccccchhhhhchhhhhch--hhhhccccccccccccccccccch---hhcccccceecccCCCcc-CCCh
Confidence            8861111122367888898887444322  223567899999999888776532   257799999999999842 222 


Q ss_pred             -hccCcccceEecccccCccc
Q 019031          326 -KISSNQLKNLLFRSCKYLKL  345 (347)
Q Consensus       326 -~~~~~~L~~L~l~~c~~l~~  345 (347)
                       ...+++|++|+|++|+ +++
T Consensus       190 ~l~~l~~L~~L~Ls~N~-lt~  209 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNNQ-ISD  209 (227)
T ss_dssp             GGGGCTTCCEEECTTSC-CCB
T ss_pred             hhcCCCCCCEEECcCCc-CCC
Confidence             3467899999999884 553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=1.5e-10  Score=94.77  Aligned_cols=164  Identities=16%  Similarity=0.073  Sum_probs=119.8

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEE
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  221 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L  221 (347)
                      .++++|+  +..+...  .++ .+..+++|++|+++++.+........+++|+.|+++++.+++  +.. +.++++|+.|
T Consensus        46 ~~L~~L~--l~~~~i~--~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L  117 (210)
T d1h6ta2          46 NSIDQII--ANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL  117 (210)
T ss_dssp             HTCCEEE--CTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred             cCccEEE--CcCCCCC--Cch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-cccccccccc
Confidence            3788888  5433222  222 355689999999999987655456789999999999998843  222 6779999999


Q ss_pred             EeeccCCCCccccccCCCceEEEccccccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHH
Q 019031          222 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  301 (347)
Q Consensus       222 ~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  301 (347)
                      ++.+|....--.+.++++|+.+.+.++.-.-......+++|+.+.++++.....  ..+.++++|+.|+++++.+++  +
T Consensus       118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~~--l  193 (210)
T d1h6ta2         118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD--L  193 (210)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB--C
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccCCCCCCEEECCCCCCCC--C
Confidence            999887544334566789999999987611112234689999999986544332  236789999999999998876  3


Q ss_pred             HHHHccCCCCCEEeecC
Q 019031          302 NHLISKFPSLEDLFVTR  318 (347)
Q Consensus       302 ~~~~~~~~~L~~L~l~~  318 (347)
                      . .+..+++|+.|+|++
T Consensus       194 ~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GGTTCTTCSEEEEEE
T ss_pred             h-hhcCCCCCCEEEccC
Confidence            3 367899999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=1.2e-09  Score=97.34  Aligned_cols=162  Identities=15%  Similarity=0.109  Sum_probs=85.2

Q ss_pred             ccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEcccc
Q 019031          169 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  248 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~  248 (347)
                      ++|+.|+++++.+........+++|+.|.+.++.+.+-.  . +..+++|+.|++.++.......+..++.++.+.+..+
T Consensus       219 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n  295 (384)
T d2omza2         219 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--P-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN  295 (384)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             CCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC--c-ccccccCCEeeccCcccCCCCcccccccccccccccc
Confidence            445555555544433323344455555555555442110  1 3445555555555443222222333455555555544


Q ss_pred             c-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhh-h
Q 019031          249 S-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-K  326 (347)
Q Consensus       249 ~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-~  326 (347)
                      . ..+. ....+++++.|+++++...+.  ..+..+++|+.|+++++.+++-  . .+..+|+|++|++++|...... .
T Consensus       296 ~l~~~~-~~~~~~~l~~L~ls~n~l~~l--~~l~~l~~L~~L~L~~n~l~~l--~-~l~~l~~L~~L~l~~N~l~~l~~l  369 (384)
T d2omza2         296 QLEDIS-PISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSDV--S-SLANLTNINWLSAGHNQISDLTPL  369 (384)
T ss_dssp             CCSCCG-GGGGCTTCSEEECCSSCCSCC--GGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCCEEECCSSCCCBCGGG
T ss_pred             cccccc-ccchhcccCeEECCCCCCCCC--cccccCCCCCEEECCCCCCCCC--h-hHcCCCCCCEEECCCCcCCCChhh
Confidence            3 1111 123567777777775444322  1256788888888887777652  2 2566888888888876432211 3


Q ss_pred             ccCcccceEeccc
Q 019031          327 ISSNQLKNLLFRS  339 (347)
Q Consensus       327 ~~~~~L~~L~l~~  339 (347)
                      ..+++|+.|+|++
T Consensus       370 ~~l~~L~~L~L~~  382 (384)
T d2omza2         370 ANLTRITQLGLND  382 (384)
T ss_dssp             TTCTTCSEEECCC
T ss_pred             ccCCCCCEeeCCC
Confidence            4567788887765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.9e-10  Score=96.62  Aligned_cols=148  Identities=16%  Similarity=0.033  Sum_probs=77.3

Q ss_pred             ccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEE
Q 019031          167 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIME  244 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~  244 (347)
                      .+++|++|+|+++.+........+++|++|+|+++.+...  ...+.+.++|+.|++.++....  ......+++++.|.
T Consensus        53 ~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~  130 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (266)
T ss_dssp             TCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccceeecccccccccccccc
Confidence            4566777777666554322334566677777766665211  1224556666777666654321  12223345666666


Q ss_pred             ccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecC
Q 019031          245 IRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (347)
Q Consensus       245 l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (347)
                      +.++. ..+ .......++|+.+.++.+.......-.+..+++|+.|+|+++.++.  +..-+..+++|+.|++++
T Consensus       131 l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~--lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCS
T ss_pred             ccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc--cChhHCCCCCCCEEEecC
Confidence            66654 111 1122345666666666443332222234556667777776666552  222223456677777765

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=1e-10  Score=83.67  Aligned_cols=40  Identities=25%  Similarity=0.472  Sum_probs=36.8

Q ss_pred             cccccCCchHHHHHHhcCCChhhhhhhcccchhhHhhhcc
Q 019031           17 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS   56 (347)
Q Consensus        17 ~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l~~~   56 (347)
                      .|.|+.||+||+.+||+||+.+|++++++|||+|+++..+
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            5999999999999999999999999999999999875433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=6.4e-10  Score=94.39  Aligned_cols=175  Identities=19%  Similarity=0.146  Sum_probs=110.6

Q ss_pred             cccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCc-ccccc
Q 019031          160 TLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSK  236 (347)
Q Consensus       160 ~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~-~~~~~  236 (347)
                      .+|..+.  ++|++|+|+++.+....  ...++++|++|+|+++.++.-  +. +..+++|+.|+++++..... ..+.+
T Consensus        24 ~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~   98 (266)
T d1p9ag_          24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QV-DGTLPVLGTLDLSHNQLQSLPLLGQT   98 (266)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--EC-CSCCTTCCEEECCSSCCSSCCCCTTT
T ss_pred             eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--cc-cccccccccccccccccccccccccc
Confidence            4454432  57888888887754322  356788888888888876321  11 35678888888888753221 22345


Q ss_pred             CCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEE
Q 019031          237 ASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  314 (347)
Q Consensus       237 ~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L  314 (347)
                      +++|+.|++.++. ..+ .......++++.|.+..+.........+..+++|+.+++.++.++.. ....+..+++|++|
T Consensus        99 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~-~~~~~~~l~~L~~L  177 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTL  177 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEE
T ss_pred             ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc-Ccccccccccccee
Confidence            6888888888775 111 22223667888888875444332233346678888888888777642 12345678888888


Q ss_pred             eecCcCCchhh---hccCcccceEeccccc
Q 019031          315 FVTRCCLPGKI---KISSNQLKNLLFRSCK  341 (347)
Q Consensus       315 ~l~~c~~~~~~---~~~~~~L~~L~l~~c~  341 (347)
                      +|+++.. ..+   ....++|+.|+|++.+
T Consensus       178 ~Ls~N~L-~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         178 LLQENSL-YTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ECCSSCC-CCCCTTTTTTCCCSEEECCSCC
T ss_pred             ecccCCC-cccChhHCCCCCCCEEEecCCC
Confidence            8888742 222   2245678888887543

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.9e-10  Score=80.42  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=37.3

Q ss_pred             ccccccccCCchHHHHHHhcCCChhhhhhhcccchhhHhh
Q 019031           14 VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (347)
Q Consensus        14 ~~~~d~is~LPddiL~~Ils~L~~~~~~~~s~vskrW~~l   53 (347)
                      .-..|.|+.||+||+.+||+|||.+|+++++.|||+|+.+
T Consensus        13 ~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             hhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4457999999999999999999999999999999999974

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.86  E-value=3.8e-09  Score=91.26  Aligned_cols=58  Identities=16%  Similarity=0.155  Sum_probs=38.9

Q ss_pred             cCceEEEeeeecCCcccccccc-cccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeee
Q 019031          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL  203 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~  203 (347)
                      ++++.|+  +..+  .-..++. .+..+++|++|+++++.+....  ...++++|++|++.++.+
T Consensus        31 ~~l~~L~--Ls~N--~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          31 PDTALLD--LQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             TTCCEEE--CCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCEEE--CcCC--cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            4788888  5432  3344554 3445788999999888755432  456788888888887754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=7.1e-09  Score=88.58  Aligned_cols=194  Identities=13%  Similarity=0.028  Sum_probs=120.7

Q ss_pred             cCceEEEeeeecCCcccccccc-cccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCC
Q 019031          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPL  217 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~  217 (347)
                      .+++.|+  +....  ...++. .+..+++|++|+++++.+....  ....++.++.+....... ..-. ...+.++++
T Consensus        32 ~~~~~L~--Ls~N~--i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~l~~  106 (284)
T d1ozna_          32 AASQRIF--LHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGR  106 (284)
T ss_dssp             TTCSEEE--CTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTT
T ss_pred             CCCCEEE--CcCCc--CCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc-chhhccccc
Confidence            4677777  54322  223443 2345677888888876644222  345566777776543322 1110 122567889


Q ss_pred             ccEEEeeccCCC--CccccccCCCceEEEccccc-cchh-hhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeec
Q 019031          218 LEDLCFSNCWGL--KHLCVSKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  293 (347)
Q Consensus       218 Le~L~l~~c~~~--~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~  293 (347)
                      |++|++.++...  ........++|+.+.+.++. ..+. ......++|++|+++++.......-.+.++++|+.+++.+
T Consensus       107 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhh
Confidence            999999887642  22233345789999998875 2221 2223568899999985544322223457789999999988


Q ss_pred             cccCchHHHHHHccCCCCCEEeecCcCCch---hhhccCcccceEeccccc
Q 019031          294 VYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c~  341 (347)
                      +.++.- ....+..+++|++|+++.+....   ......++|+.|++++.+
T Consensus       187 N~l~~i-~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         187 NRVAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             SCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cccccc-ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            877752 23556788999999999874332   234467889999998643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.78  E-value=3.3e-08  Score=87.63  Aligned_cols=167  Identities=16%  Similarity=0.090  Sum_probs=121.6

Q ss_pred             ccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEE
Q 019031          165 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  244 (347)
Q Consensus       165 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~  244 (347)
                      ...+++++.+.++++.+........+++|++|+++++.+.+-  . .+..+++|+.|++.+|.......+..+++|+.|.
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  269 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  269 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccCCCCcccccccCCEee
Confidence            344678899999888766554456788999999999987432  1 2567899999999988654444566789999999


Q ss_pred             ccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCC--
Q 019031          245 IRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL--  321 (347)
Q Consensus       245 l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~--  321 (347)
                      +.++. ..+.. ....+.++.+....+.....  ..+..+++++.|+++++.+++-  . .+..+|+|+.|++++|..  
T Consensus       270 l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l--~-~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         270 LGANQISNISP-LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI--S-PVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC--G-GGGGCTTCCEEECCSSCCCC
T ss_pred             ccCcccCCCCc-cccccccccccccccccccc--cccchhcccCeEECCCCCCCCC--c-ccccCCCCCEEECCCCCCCC
Confidence            98875 12221 23677888888874444322  2357789999999999888763  2 267899999999999842  


Q ss_pred             chhhhccCcccceEeccccc
Q 019031          322 PGKIKISSNQLKNLLFRSCK  341 (347)
Q Consensus       322 ~~~~~~~~~~L~~L~l~~c~  341 (347)
                      +.. ...+++|+.|+++++.
T Consensus       344 l~~-l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         344 VSS-LANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CGG-GGGCTTCCEEECCSSC
T ss_pred             Chh-HcCCCCCCEEECCCCc
Confidence            332 3467899999998764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7.5e-09  Score=88.44  Aligned_cols=171  Identities=16%  Similarity=0.065  Sum_probs=112.8

Q ss_pred             cCceEEEeeeecCCcccccccccc-cccccccEEEEeeee-ccC--CCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCC
Q 019031          142 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCR-LEQ--PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPL  217 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~-l~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~  217 (347)
                      ..+++|+  +....  ...++... .....++.+...... +..  +....++++|++|+++++....-. ...+..+++
T Consensus        56 ~~L~~L~--ls~n~--l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~  130 (284)
T d1ozna_          56 RNLTILW--LHSNV--LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAA  130 (284)
T ss_dssp             TTCCEEE--CCSSC--CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTT
T ss_pred             ccccccc--ccccc--ccccccccccccccccccccccccccccccchhhcccccCCEEecCCccccccc-ccccchhcc
Confidence            5788888  54322  12222222 335677777765432 222  224678899999999988763211 123566889


Q ss_pred             ccEEEeeccCCCCcc---ccccCCCceEEEccccc-cch-hhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEee
Q 019031          218 LEDLCFSNCWGLKHL---CVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  292 (347)
Q Consensus       218 Le~L~l~~c~~~~~~---~~~~~~~L~~L~l~~~~-~~~-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~  292 (347)
                      |+.+++.++.. +.+   .+..+++|+.|++.++. ..+ ......+++|+.+.+..+......+..+..+++|+.|+++
T Consensus       131 L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~  209 (284)
T d1ozna_         131 LQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (284)
T ss_dssp             CCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cchhhhccccc-cccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccc
Confidence            99999988753 322   24456899999999886 222 2223467899999998555543333456788999999999


Q ss_pred             ccccCchHHHHHHccCCCCCEEeecCc
Q 019031          293 SVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      .+.+... ....+..+++|+.|++++.
T Consensus       210 ~N~i~~~-~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         210 ANNLSAL-PTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             SSCCSCC-CHHHHTTCTTCCEEECCSS
T ss_pred             ccccccc-cccccccccccCEEEecCC
Confidence            8887753 3456778999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.8e-09  Score=81.37  Aligned_cols=61  Identities=18%  Similarity=0.124  Sum_probs=32.9

Q ss_pred             cCCCccEEEeeeeCCCCCce-eeccCCCCCcEEEeeccccCchH--HHHHHccCCCCCEEeecC
Q 019031          258 SVPSLQQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVYFADNE--FNHLISKFPSLEDLFVTR  318 (347)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~~L~~L~l~~  318 (347)
                      .+|+|+.|.++++....... ..+..+++|+.|++.++.++...  -..++..+|+|+.|+-..
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             cccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCC
Confidence            45555555555333222111 23456777777777776654321  233556678888776443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.71  E-value=1.1e-08  Score=88.52  Aligned_cols=197  Identities=18%  Similarity=0.091  Sum_probs=94.0

Q ss_pred             cCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCC--CcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCcc
Q 019031          142 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  219 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le  219 (347)
                      .++++|+  +..+..-...+|..+.++++|++|+|+++.+....  ....+++|+.+.++++..... +..-+..++.|+
T Consensus        76 ~~L~~L~--Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~  152 (313)
T d1ogqa_          76 PYLNFLY--IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEE--EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCC
T ss_pred             ccccccc--cccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCcccc
Confidence            3555555  32211122245555555666666666665543211  244555666666665544211 111245566666


Q ss_pred             EEEeeccCCCCcc--ccccCCCc-eEEEccc-----------------------cc--cchhhhhhcCCCccEEEeeeeC
Q 019031          220 DLCFSNCWGLKHL--CVSKASKL-KIMEIRS-----------------------FS--EEIEIVEISVPSLQQLTLLFYG  271 (347)
Q Consensus       220 ~L~l~~c~~~~~~--~~~~~~~L-~~L~l~~-----------------------~~--~~~~~~~~~~p~L~~L~l~~~~  271 (347)
                      .+++.++.....+  .+..+.++ +.+.+..                       +.  ..........++++.+.+..+.
T Consensus       153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6666655321110  01111111 2233222                       22  1111112244556666665322


Q ss_pred             CCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhhhc--cCcccceEecccccCc
Q 019031          272 ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI--SSNQLKNLLFRSCKYL  343 (347)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~l  343 (347)
                      ..... ..++.+++|+.|+++++.+++. ++..+..+++|++|+++++.....+..  ...+|+.+.+.+.+.+
T Consensus       233 l~~~~-~~~~~~~~L~~L~Ls~N~l~g~-iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         233 LAFDL-GKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             ECCBG-GGCCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             ccccc-cccccccccccccCccCeeccc-CChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccc
Confidence            22111 1345677888888877777643 334456778888888887643323322  2345666666555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.70  E-value=2.1e-08  Score=88.04  Aligned_cols=179  Identities=15%  Similarity=0.082  Sum_probs=116.6

Q ss_pred             cccccccccEEEEeeeeccCCC------CcCCCCCcCEEEeeeeeeChHHHHHH------------HhcCCCccEEEeec
Q 019031          164 AIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLDEQMVQKL------------ASECPLLEDLCFSN  225 (347)
Q Consensus       164 ~~~~~~~L~~L~L~~~~l~~~~------~~~~~~~L~~L~L~~~~~~~~~l~~i------------~~~cp~Le~L~l~~  225 (347)
                      .+..+++|++|+|++|.+....      ....+++|+.|+++++.+++.....+            ....+.|+.|.+.+
T Consensus        88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1          88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence            3445788999999988776543      22357889999998887744433222            24578888888877


Q ss_pred             cCCCCc----c--ccccCCCceEEEccccc---cch----hhhhhcCCCccEEEeeeeCCCCC----ceeeccCCCCCcE
Q 019031          226 CWGLKH----L--CVSKASKLKIMEIRSFS---EEI----EIVEISVPSLQQLTLLFYGARRP----RVVEVARSPHLKK  288 (347)
Q Consensus       226 c~~~~~----~--~~~~~~~L~~L~l~~~~---~~~----~~~~~~~p~L~~L~l~~~~~~~~----~~~~~~~~~~L~~  288 (347)
                      +..-..    +  .+..+++|+.|.+..|.   .+.    .......++|+.|+++++.....    ....+..+++|++
T Consensus       168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence            643211    1  12345789999998876   111    12223678999999985433211    1123567899999


Q ss_pred             EEeeccccCchHHHHHHc-----cCCCCCEEeecCcCCch-------h-hhccCcccceEecccccC
Q 019031          289 LDLVSVYFADNEFNHLIS-----KFPSLEDLFVTRCCLPG-------K-IKISSNQLKNLLFRSCKY  342 (347)
Q Consensus       289 L~L~~~~~~~~~~~~~~~-----~~~~L~~L~l~~c~~~~-------~-~~~~~~~L~~L~l~~c~~  342 (347)
                      |+++++.+++.....+..     ..+.|+.|+++++..-.       . +....++|++|+|++...
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            999999888866665543     24679999999875322       1 122567899999987654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.68  E-value=7.6e-08  Score=82.80  Aligned_cols=170  Identities=13%  Similarity=0.121  Sum_probs=85.2

Q ss_pred             cCceEEEeeeecCCcccccc-cccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHH------------
Q 019031          142 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMV------------  208 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l------------  208 (347)
                      .++++|+  +..+.  ...+ +..+..+++|+.|+++++.+...+ ...++.++.|.+..+.+..-..            
T Consensus        55 ~~L~~L~--l~~n~--~~~i~~~~f~~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l  129 (305)
T d1xkua_          55 KNLHTLI--LINNK--ISKISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV  129 (305)
T ss_dssp             TTCCEEE--CCSSC--CCCBCTTTTTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred             ccccccc--ccccc--ccccchhhhhCCCccCEecccCCccCcCc-cchhhhhhhhhccccchhhhhhhhhhcccccccc
Confidence            4788887  54322  2233 333455788999999888765432 2345667777766655421111            


Q ss_pred             -------------HHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccccc--cchhhhhhcCCCccEEEeeeeCCC
Q 019031          209 -------------QKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGAR  273 (347)
Q Consensus       209 -------------~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~p~L~~L~l~~~~~~  273 (347)
                                   ...+.++++|+.+.+.+|. +..+....+++|+.|++.++.  .........+++++.|.++.+...
T Consensus       130 ~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccCCCccccccccccCccccccCC-ccccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccc
Confidence                         1112333444444444432 111222223556666665544  111112234455666666533332


Q ss_pred             CCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          274 RPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       274 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ......+.++++|+.|+|+++.++.  +...+..+++|+.|+++++
T Consensus       209 ~~~~~~~~~l~~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         209 AVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             EECTTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSS
T ss_pred             ccccccccccccceeeecccccccc--cccccccccCCCEEECCCC
Confidence            2212234556677777776666543  2233455677777777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.61  E-value=3.8e-08  Score=86.30  Aligned_cols=177  Identities=15%  Similarity=0.040  Sum_probs=118.8

Q ss_pred             cCceEEEeeeecCCcc---cccccccccccccccEEEEeeeeccCCC---------------CcCCCCCcCEEEeeeeee
Q 019031          142 NGVRELDFENITDENT---VYTLPQAIFSANSVTNLRLVWCRLEQPF---------------DSIMLCSLKKLTLERVCL  203 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~l~~~~---------------~~~~~~~L~~L~L~~~~~  203 (347)
                      +++++|+  +..+.-.   ...+...+..+++|++|++++|.+....               .....+.|+.+.++++.+
T Consensus        93 ~~L~~L~--L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          93 PKLHTVR--LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             TTCCEEE--CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             CCccccc--ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            5799999  6543222   2233334445789999999988753211               124578999999999888


Q ss_pred             ChHH---HHHHHhcCCCccEEEeeccCCCCc-------cccccCCCceEEEccccc---cc---hhhhhhcCCCccEEEe
Q 019031          204 DEQM---VQKLASECPLLEDLCFSNCWGLKH-------LCVSKASKLKIMEIRSFS---EE---IEIVEISVPSLQQLTL  267 (347)
Q Consensus       204 ~~~~---l~~i~~~cp~Le~L~l~~c~~~~~-------~~~~~~~~L~~L~l~~~~---~~---~~~~~~~~p~L~~L~l  267 (347)
                      ++..   +...+..++.|++|++.+|..-..       -.+..+++|+.|+++++.   .+   +......+++|++|.+
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            5544   444466799999999998864211       123456899999999876   11   2223347899999999


Q ss_pred             eeeCCCCCceee----c--cCCCCCcEEEeeccccCchHHHHHH----ccCCCCCEEeecCcC
Q 019031          268 LFYGARRPRVVE----V--ARSPHLKKLDLVSVYFADNEFNHLI----SKFPSLEDLFVTRCC  320 (347)
Q Consensus       268 ~~~~~~~~~~~~----~--~~~~~L~~L~L~~~~~~~~~~~~~~----~~~~~L~~L~l~~c~  320 (347)
                      +++.........    +  ...+.|++|+++++.+++.++..+.    .++++|+.|+++++.
T Consensus       251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            866553321111    1  2347899999999998876655443    357899999998864

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.6e-09  Score=76.80  Aligned_cols=39  Identities=31%  Similarity=0.648  Sum_probs=35.7

Q ss_pred             cccccccCCc----hHHHHHHhcCCChhhhhhhcccchhhHhh
Q 019031           15 VAMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQL   53 (347)
Q Consensus        15 ~~~d~is~LP----ddiL~~Ils~L~~~~~~~~s~vskrW~~l   53 (347)
                      -..|.|+.||    |||+.+||+|||.+|++++++|||+|+++
T Consensus         6 l~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             HcccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3569999999    59999999999999999999999999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=2.6e-08  Score=73.83  Aligned_cols=118  Identities=17%  Similarity=0.108  Sum_probs=54.7

Q ss_pred             EEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccccccCCCceEEEccccccch
Q 019031          173 NLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEI  252 (347)
Q Consensus       173 ~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~  252 (347)
                      .|+|+++.+........+++|++|+++++.+..  +..-+..+++|+.|++.++....--.+..+++|+.|+++++.   
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~---   76 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR---   76 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC---
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCccccccccCeEECCCCc---
Confidence            455555555433334555666666666665521  111134556666666655432111112333444444444432   


Q ss_pred             hhhhhcCCCccEEEeeeeCCCCC-ceeeccCCCCCcEEEeeccccCch--HHHHHHccCCCCCEE
Q 019031          253 EIVEISVPSLQQLTLLFYGARRP-RVVEVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDL  314 (347)
Q Consensus       253 ~~~~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L  314 (347)
                                         .... ....+..+++|+.|++.++.+...  ....+...+|+|+.|
T Consensus        77 -------------------i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 -------------------LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             -------------------CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             -------------------cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence                               2111 111235566777777766655421  123344556666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.55  E-value=8.8e-08  Score=82.74  Aligned_cols=194  Identities=16%  Similarity=0.067  Sum_probs=128.1

Q ss_pred             CceEEEeeeecCC-cccccccccccccccccEEEEeee-ecc--CCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCc
Q 019031          143 GVRELDFENITDE-NTVYTLPQAIFSANSVTNLRLVWC-RLE--QPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  218 (347)
Q Consensus       143 ~l~~L~~~l~~~~-~~~~~l~~~~~~~~~L~~L~L~~~-~l~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~L  218 (347)
                      +|++|+  +.... .....+|..+.++++|++|+|+++ .+.  .+....++++|++|+|+++.+.... ...+..++.|
T Consensus        51 ~v~~L~--L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLD--LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTL  127 (313)
T ss_dssp             CEEEEE--EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTC
T ss_pred             EEEEEE--CCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-cccccchhhh
Confidence            578888  54432 234468889999999999999974 454  2235678999999999999873211 1235678999


Q ss_pred             cEEEeeccCCCCc--cccccCCCceEEEccccc--cchhhhhhcCCCc-cEEEeeeeCC---------------------
Q 019031          219 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS--EEIEIVEISVPSL-QQLTLLFYGA---------------------  272 (347)
Q Consensus       219 e~L~l~~c~~~~~--~~~~~~~~L~~L~l~~~~--~~~~~~~~~~p~L-~~L~l~~~~~---------------------  272 (347)
                      +.+++..+.....  -.+..+++|+.+.+.++.  ..+.......+++ +.+.++.+..                     
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~  207 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN  207 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred             cccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999988754333  245678999999999886  1222222234443 5555442111                     


Q ss_pred             --CCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhh---hccCcccceEeccccc
Q 019031          273 --RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCK  341 (347)
Q Consensus       273 --~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~  341 (347)
                        .......+..+++++.+++.++.+... + ..+..+++|+.|+++++.....+   ....++|+.|+|+++.
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~-~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSLAFD-L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCB-G-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             ccccccccccccccccccccccccccccc-c-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence              000111235678899999987777653 2 23466899999999998644333   3456899999998763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.1e-08  Score=76.36  Aligned_cols=80  Identities=18%  Similarity=0.063  Sum_probs=52.4

Q ss_pred             cCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCch------hhhccCcc
Q 019031          258 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG------KIKISSNQ  331 (347)
Q Consensus       258 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~~~~~~~~  331 (347)
                      .+|+|++|.++.+.........+..+++|+.|++.++.+.+..-...+..+|+|++|++.+|+...      .+...+|+
T Consensus        61 ~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~  140 (162)
T d1a9na_          61 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ  140 (162)
T ss_dssp             CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTT
T ss_pred             cCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCC
Confidence            345556666553333221112235789999999999988763323446789999999999985422      23456789


Q ss_pred             cceEec
Q 019031          332 LKNLLF  337 (347)
Q Consensus       332 L~~L~l  337 (347)
                      |+.|+-
T Consensus       141 L~~LD~  146 (162)
T d1a9na_         141 VRVLDF  146 (162)
T ss_dssp             CSEETT
T ss_pred             cCeeCC
Confidence            998874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.52  E-value=6.9e-09  Score=83.76  Aligned_cols=103  Identities=17%  Similarity=0.086  Sum_probs=54.5

Q ss_pred             cCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCccc-c-ccCCCceEEEccccccchhhhh--hcCCCc
Q 019031          187 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-V-SKASKLKIMEIRSFSEEIEIVE--ISVPSL  262 (347)
Q Consensus       187 ~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~--~~~p~L  262 (347)
                      ...+++|++|+|+++.+..  ++. +.++++|+.|++++|. +..+. + ..+++|+.|++.++.  +..+.  ..+++|
T Consensus        44 l~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~--i~~l~~~~~l~~L  117 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ--IASLSGIEKLVNL  117 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE--CCCHHHHHHHHHS
T ss_pred             HhcccccceeECcccCCCC--ccc-ccCCccccChhhcccc-ccccccccccccccccccccccc--ccccccccccccc
Confidence            4557788888888887732  112 4567778888887764 22221 1 113467777776654  22221  244556


Q ss_pred             cEEEeeeeCCCCCce-eeccCCCCCcEEEeeccc
Q 019031          263 QQLTLLFYGARRPRV-VEVARSPHLKKLDLVSVY  295 (347)
Q Consensus       263 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~L~~~~  295 (347)
                      +.|+++++....... ..+..+++|+.|++.++.
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccchhccccccccccCCCccceeecCCCc
Confidence            666665443322111 123555666666665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.51  E-value=1.4e-09  Score=87.94  Aligned_cols=108  Identities=17%  Similarity=0.190  Sum_probs=69.3

Q ss_pred             ccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCCcc-ccccC
Q 019031          159 YTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CVSKA  237 (347)
Q Consensus       159 ~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~~~-~~~~~  237 (347)
                      ..++..+..+++|++|+|+++.+.......++++|++|+|+++.+..  +..+...+++|+.|++.++. +..+ .+..+
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l  114 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ-IASLSGIEKL  114 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEE-CCCHHHHHHH
T ss_pred             hhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccccccc-cccccccccc
Confidence            34444555677888888888876654445677888888888887732  11233345678888887774 3332 24456


Q ss_pred             CCceEEEccccc-cchhhh--hhcCCCccEEEeee
Q 019031          238 SKLKIMEIRSFS-EEIEIV--EISVPSLQQLTLLF  269 (347)
Q Consensus       238 ~~L~~L~l~~~~-~~~~~~--~~~~p~L~~L~l~~  269 (347)
                      ++|+.|+++++. ..+..+  ...+|+|+.|.+++
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             ccccccccccchhccccccccccCCCccceeecCC
Confidence            788888888775 233322  23678888888873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.3e-07  Score=78.41  Aligned_cols=193  Identities=16%  Similarity=0.064  Sum_probs=90.9

Q ss_pred             cCceEEEeeeecCCccccccccc-ccccccccEEEEeeeeccC---CCCcCCCCCcCEEEeeeee-eChHHHHHHHhcCC
Q 019031          142 NGVRELDFENITDENTVYTLPQA-IFSANSVTNLRLVWCRLEQ---PFDSIMLCSLKKLTLERVC-LDEQMVQKLASECP  216 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~---~~~~~~~~~L~~L~L~~~~-~~~~~l~~i~~~cp  216 (347)
                      .++++|+  +....  ...++.. +..+++|++|+++++.+..   .....++++++++.+..+. ..... ...+.+++
T Consensus        29 ~~l~~L~--Ls~n~--i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~-~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELR--FVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLP  103 (242)
T ss_dssp             SCCSEEE--EESCC--CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC-TTSEECCT
T ss_pred             CCCCEEE--CcCCc--CCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccc-cccccccc
Confidence            3677777  43322  2233333 2346777777777765332   1134556777777665432 11111 12245677


Q ss_pred             CccEEEeeccCCCCccccc---cCCCceEEEccccccchhhhh----hc-CCCccEEEeeeeCCCCCceeeccCCCCCcE
Q 019031          217 LLEDLCFSNCWGLKHLCVS---KASKLKIMEIRSFSEEIEIVE----IS-VPSLQQLTLLFYGARRPRVVEVARSPHLKK  288 (347)
Q Consensus       217 ~Le~L~l~~c~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~----~~-~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~  288 (347)
                      +|+.|.+.++.........   .+..+..+...+..  +..+.    .. .+.+..+.+..+.... ........++++.
T Consensus       104 ~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~--l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~  180 (242)
T d1xwdc1         104 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN--IHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDE  180 (242)
T ss_dssp             TCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT--CCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEE
T ss_pred             cccccccchhhhcccccccccccccccccccccccc--cccccccccccccccceeeecccccccc-cccccccchhhhc
Confidence            7777777776432211111   22333333333321  22111    11 2356666665322211 1111122345555


Q ss_pred             EEe-eccccCchHHHHHHccCCCCCEEeecCcCCchhhh-ccCcccceEecccccCcc
Q 019031          289 LDL-VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLK  344 (347)
Q Consensus       289 L~L-~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~L~~L~l~~c~~l~  344 (347)
                      +.. .++.++.- -...+.++++|+.|++++++. ..+. ..+.+|++|..-++.+++
T Consensus       181 ~~~l~~n~l~~l-~~~~f~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~l~~~~l~  236 (242)
T d1xwdc1         181 LNLSDNNNLEEL-PNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLK  236 (242)
T ss_dssp             EECTTCTTCCCC-CTTTTTTSCCCSEEECTTSCC-CCCCSSSCTTCCEEESSSEESSS
T ss_pred             cccccccccccc-cHHHhcCCCCCCEEECCCCcC-CccCHHHHcCCcccccCcCCCCC
Confidence            543 44445421 123467789999999988743 2222 234455555544444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=6e-07  Score=66.20  Aligned_cols=99  Identities=12%  Similarity=0.081  Sum_probs=60.6

Q ss_pred             ccCCCceEEEccccc-cchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCCCCE
Q 019031          235 SKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLED  313 (347)
Q Consensus       235 ~~~~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~  313 (347)
                      .++++|++|+++++. ..+......+++|+.|.++.+.....  -.+..+++|++|++.++.+........+..+|+|+.
T Consensus        17 ~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~   94 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL   94 (124)
T ss_dssp             GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             ccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc--CccccccccCeEECCCCccCCCCCchhhcCCCCCCE
Confidence            344556666665553 22211123566777777764433222  135789999999999988875332234577999999


Q ss_pred             EeecCcCC------chhhhccCcccceE
Q 019031          314 LFVTRCCL------PGKIKISSNQLKNL  335 (347)
Q Consensus       314 L~l~~c~~------~~~~~~~~~~L~~L  335 (347)
                      |++++.+.      ...+....|+|++|
T Consensus        95 L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          95 LNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             EECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99998532      12334456777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.13  E-value=1.2e-05  Score=69.54  Aligned_cols=57  Identities=21%  Similarity=0.236  Sum_probs=41.7

Q ss_pred             CCCCCcEEEeeccccCchHHHHHHccCCCCCEEeecCcCCchhhhccCcccceEecccccCccc
Q 019031          282 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKL  345 (347)
Q Consensus       282 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~l~~  345 (347)
                      .+++|++|+++++.++.     +...+++|+.|++++|. +..+....++|++|+|++|+ |+.
T Consensus       282 ~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~-L~~  338 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIE-----LPALPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNP-LRE  338 (353)
T ss_dssp             CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSS
T ss_pred             cCCCCCEEECCCCccCc-----cccccCCCCEEECCCCc-CCccccccCCCCEEECcCCc-CCC
Confidence            35789999998887653     23457899999998774 44455556789999998876 653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.04  E-value=1.8e-06  Score=68.65  Aligned_cols=106  Identities=18%  Similarity=0.091  Sum_probs=49.6

Q ss_pred             CcCEEEeeeeeeChHHHHHHHhcCCCccEEEeeccCCCC--ccccccCCCceEEEccccc-cchhh-hhhcCCCccEEEe
Q 019031          192 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTL  267 (347)
Q Consensus       192 ~L~~L~L~~~~~~~~~l~~i~~~cp~Le~L~l~~c~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~p~L~~L~l  267 (347)
                      ++++|+|+++.++...-...+.+.++|+.|++.++....  .-.+..+++|+.|+++++. ..+.. .....++|+.|++
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            455555555544211111223445555555555443211  1122234555555555553 11111 1124566666666


Q ss_pred             eeeCCCCCceeeccCCCCCcEEEeeccccC
Q 019031          268 LFYGARRPRVVEVARSPHLKKLDLVSVYFA  297 (347)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  297 (347)
                      +.+.......-.+..+++|++|+|+++.+.
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCccccccCHHHhcCCcccccccccccccc
Confidence            543332222223466788888888777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=7.9e-06  Score=73.30  Aligned_cols=177  Identities=16%  Similarity=0.118  Sum_probs=102.0

Q ss_pred             ccccccEEEEeeeeccCC-------CCcCCCCCcCEEEeeeeeeChHHHH---HHHhcCCCccEEEeeccCCCC----cc
Q 019031          167 SANSVTNLRLVWCRLEQP-------FDSIMLCSLKKLTLERVCLDEQMVQ---KLASECPLLEDLCFSNCWGLK----HL  232 (347)
Q Consensus       167 ~~~~L~~L~L~~~~l~~~-------~~~~~~~~L~~L~L~~~~~~~~~l~---~i~~~cp~Le~L~l~~c~~~~----~~  232 (347)
                      ..+.++.+.+.++.+...       ......+.|+.++++++.+......   ..+...+.++.+.+.++....    .+
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            346677777776653211       0234466788888888777444332   234457778888877664311    01


Q ss_pred             c---cccCCCceEEEccccc---cc---hhhhhhcCCCccEEEeeeeCCCCCcee----ec-cCCCCCcEEEeeccccCc
Q 019031          233 C---VSKASKLKIMEIRSFS---EE---IEIVEISVPSLQQLTLLFYGARRPRVV----EV-ARSPHLKKLDLVSVYFAD  298 (347)
Q Consensus       233 ~---~~~~~~L~~L~l~~~~---~~---~~~~~~~~p~L~~L~l~~~~~~~~~~~----~~-~~~~~L~~L~L~~~~~~~  298 (347)
                      .   .....+|+.+.+.++.   ..   +.......++|++|+++++........    .+ ...+.|++|+|+++.+++
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence            0   1123578888888776   11   122233567888888875443221111    11 345678888888888887


Q ss_pred             hHHHH---HHccCCCCCEEeecCcCCch----h----hhccCcccceEecccccCc
Q 019031          299 NEFNH---LISKFPSLEDLFVTRCCLPG----K----IKISSNQLKNLLFRSCKYL  343 (347)
Q Consensus       299 ~~~~~---~~~~~~~L~~L~l~~c~~~~----~----~~~~~~~L~~L~l~~c~~l  343 (347)
                      .....   .+..+++|++|+++++..-.    .    +......|+.|.+.++..-
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            54433   35567888888888774321    1    1123346888888776543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.77  E-value=1.6e-05  Score=62.93  Aligned_cols=103  Identities=13%  Similarity=-0.010  Sum_probs=74.7

Q ss_pred             CCccEEEeeccCCCC---ccccccCCCceEEEccccc-c-chhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEE
Q 019031          216 PLLEDLCFSNCWGLK---HLCVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLD  290 (347)
Q Consensus       216 p~Le~L~l~~c~~~~---~~~~~~~~~L~~L~l~~~~-~-~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  290 (347)
                      +.++.|+|+++....   ...+.++++|+.|+++++. . .........++|++|+++++.......-.+.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            579999999886422   2334568999999999886 1 1222334678999999996544332333568899999999


Q ss_pred             eeccccCchHHHHHHccCCCCCEEeecCc
Q 019031          291 LVSVYFADNEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       291 L~~~~~~~~~~~~~~~~~~~L~~L~l~~c  319 (347)
                      |+++.++.- ....+..+++|++|++++.
T Consensus       109 L~~N~l~~i-~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         109 LYDNQISCV-MPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCSSCCCEE-CTTSSTTCTTCCEEECTTC
T ss_pred             cCCcccccc-CHHHhcCCccccccccccc
Confidence            999988752 2244677899999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=2e-05  Score=70.49  Aligned_cols=151  Identities=17%  Similarity=0.222  Sum_probs=86.4

Q ss_pred             ccccEEEEeeeeccCCC---CcCCCCCcCEEEeeeeeeChHHHHHH---HhcCCCccEEEeeccCCCCcc---cc-----
Q 019031          169 NSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKL---ASECPLLEDLCFSNCWGLKHL---CV-----  234 (347)
Q Consensus       169 ~~L~~L~L~~~~l~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~i---~~~cp~Le~L~l~~c~~~~~~---~~-----  234 (347)
                      .+|++|++++..+....   ....++++++|+|.+|.+++.+++.+   +..+|+|++|+++++. ++..   .+     
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHh
Confidence            36788888887765432   34567888888888888877666554   4678888888888774 3211   11     


Q ss_pred             ccCCCceEEEccccc---cchhhh---hhcCCCccEEEeeeeCCCCCce-e----eccCCCCCcEEEeeccccCc---hH
Q 019031          235 SKASKLKIMEIRSFS---EEIEIV---EISVPSLQQLTLLFYGARRPRV-V----EVARSPHLKKLDLVSVYFAD---NE  300 (347)
Q Consensus       235 ~~~~~L~~L~l~~~~---~~~~~~---~~~~p~L~~L~l~~~~~~~~~~-~----~~~~~~~L~~L~L~~~~~~~---~~  300 (347)
                      ....+|++|++++|.   .....+   ....++|++|.++++....... .    ....................   ..
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcc
Confidence            112478888888876   111222   2356788888887433321100 0    01112233333433332222   22


Q ss_pred             HHHHHccCCCCCEEeecCcC
Q 019031          301 FNHLISKFPSLEDLFVTRCC  320 (347)
Q Consensus       301 ~~~~~~~~~~L~~L~l~~c~  320 (347)
                      ....+...+.++.+.+..+.
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~  180 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNND  180 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSB
T ss_pred             cccccccccccccccccccc
Confidence            23344566788888888763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.61  E-value=0.00035  Score=59.88  Aligned_cols=160  Identities=21%  Similarity=0.208  Sum_probs=92.5

Q ss_pred             HHcCceEEEeeeecCCcccccccccccccccccEEEEeeeeccCCCCcCCCCCcCEEEeeeeeeChHHHHHHHhcC-CCc
Q 019031          140 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASEC-PLL  218 (347)
Q Consensus       140 ~~~~l~~L~~~l~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~c-p~L  218 (347)
                      ...++++|+  +....  -..+|..   .++|++|+++++.+...  ...+.+|++|.+.++.++.      +... +.|
T Consensus        36 ~~~~l~~Ld--Ls~~~--L~~lp~~---~~~L~~L~Ls~N~l~~l--p~~~~~L~~L~l~~n~l~~------l~~lp~~L  100 (353)
T d1jl5a_          36 LDRQAHELE--LNNLG--LSSLPEL---PPHLESLVASCNSLTEL--PELPQSLKSLLVDNNNLKA------LSDLPPLL  100 (353)
T ss_dssp             HHHTCSEEE--CTTSC--CSCCCSC---CTTCSEEECCSSCCSSC--CCCCTTCCEEECCSSCCSC------CCSCCTTC
T ss_pred             HHcCCCEEE--eCCCC--CCCCCCC---CCCCCEEECCCCCCccc--ccchhhhhhhhhhhcccch------hhhhcccc
Confidence            335788888  54332  2244432   36789999998877643  2346789999988887631      1223 468


Q ss_pred             cEEEeeccCCCCccccccCCCceEEEccccccchhhhhhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCc
Q 019031          219 EDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD  298 (347)
Q Consensus       219 e~L~l~~c~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  298 (347)
                      ++|++.++....--....+++|+.|++.++.  ........+.+..+.+.....  .....+..++.++.+++..+....
T Consensus       101 ~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~--~~~~~~~~~~l~~l~~~~~~~--~~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         101 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNS--LKKLPDLPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCC--SSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccccccccccchhhhccceeecccccc--ccccccccccccchhhccccc--cccccccccccceecccccccccc
Confidence            9999987753221223456789999988774  333334456666766652222  112234556667777664432211


Q ss_pred             ------------------hHHHHHHccCCCCCEEeecCc
Q 019031          299 ------------------NEFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       299 ------------------~~~~~~~~~~~~L~~L~l~~c  319 (347)
                                        ..+. ....+++|+.+.++.+
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n  214 (353)
T d1jl5a_         177 LPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNN  214 (353)
T ss_dssp             CCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccc-cccccccccccccccc
Confidence                              0011 1234677888888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.59  E-value=0.0001  Score=56.75  Aligned_cols=113  Identities=10%  Similarity=0.076  Sum_probs=56.6

Q ss_pred             HHHHHHhcCCCccEEEeeccCCCCcc-------ccccCCCceEEEccccc---cchhhh---hhcCCCccEEEeeeeCCC
Q 019031          207 MVQKLASECPLLEDLCFSNCWGLKHL-------CVSKASKLKIMEIRSFS---EEIEIV---EISVPSLQQLTLLFYGAR  273 (347)
Q Consensus       207 ~l~~i~~~cp~Le~L~l~~c~~~~~~-------~~~~~~~L~~L~l~~~~---~~~~~~---~~~~p~L~~L~l~~~~~~  273 (347)
                      .++.+..++|.|++|+|.++..+...       .+...++|++|++++|.   .....+   ....+.|++|.++++...
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            45555555666666666554333211       11223556666666554   111111   123455666666544332


Q ss_pred             CCc----eeeccCCCCCcEEEeeccc---cCch---HHHHHHccCCCCCEEeecCc
Q 019031          274 RPR----VVEVARSPHLKKLDLVSVY---FADN---EFNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       274 ~~~----~~~~~~~~~L~~L~L~~~~---~~~~---~~~~~~~~~~~L~~L~l~~c  319 (347)
                      ...    .-.+...+.|++|++.++.   +.+.   .+...+...++|+.|.+++.
T Consensus        86 ~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          86 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            211    1124556778888886543   3222   24445556778888888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.5e-05  Score=64.03  Aligned_cols=170  Identities=9%  Similarity=0.012  Sum_probs=94.2

Q ss_pred             cCceEEEeeeecCCcccccccc-cccccccccEEEEeeee-ccC--CCCcCCCCCcCEEEeeeeeeChHHHHHHHhcCCC
Q 019031          142 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCR-LEQ--PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPL  217 (347)
Q Consensus       142 ~~l~~L~~~l~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-l~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~i~~~cp~  217 (347)
                      .++++|+  +....... .++. .+..+++++++.+..+. +..  .....++++|+++.+.++.+.....   ...++.
T Consensus        53 ~~L~~L~--ls~n~~~~-~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~---~~~~~~  126 (242)
T d1xwdc1          53 GDLEKIE--ISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD---VHKIHS  126 (242)
T ss_dssp             TTCCEEE--EESCTTCC-EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC---CTTTCB
T ss_pred             chhhhhh--hccccccc-eeeccccccccccccccccccccccccccccccccccccccccchhhhccccc---cccccc
Confidence            5899999  65432222 2222 33457889999887643 221  2245789999999999987732211   223455


Q ss_pred             ccEEEeeccC--CCCccc---cccC-CCceEEEccccc-cchhhhhhcCCCccEEEeeeeC-CCCCceeeccCCCCCcEE
Q 019031          218 LEDLCFSNCW--GLKHLC---VSKA-SKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYG-ARRPRVVEVARSPHLKKL  289 (347)
Q Consensus       218 Le~L~l~~c~--~~~~~~---~~~~-~~L~~L~l~~~~-~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L  289 (347)
                      ++.+......  .+..+.   +.++ ..++.|.+.++. ..+.......+++.++....+. ...-....+.++++|+.|
T Consensus       127 l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L  206 (242)
T d1xwdc1         127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL  206 (242)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEE
T ss_pred             ccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEE
Confidence            5555543322  233322   2222 478889888764 2333333455677666554222 221112235789999999


Q ss_pred             EeeccccCchHHHHHHccCCCCCEEeecC
Q 019031          290 DLVSVYFADNEFNHLISKFPSLEDLFVTR  318 (347)
Q Consensus       290 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (347)
                      +++++.++.-. ...+.++++|+.|++..
T Consensus       207 ~Ls~N~l~~l~-~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         207 DISRTRIHSLP-SYGLENLKKLRARSTYN  234 (242)
T ss_dssp             ECTTSCCCCCC-SSSCTTCCEEESSSEES
T ss_pred             ECCCCcCCccC-HHHHcCCcccccCcCCC
Confidence            99888776411 12234445555544443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.18  E-value=0.00047  Score=52.73  Aligned_cols=40  Identities=15%  Similarity=0.134  Sum_probs=25.1

Q ss_pred             ccCCCCCcEEEee--ccccCchH---HHHHHccCCCCCEEeecCc
Q 019031          280 VARSPHLKKLDLV--SVYFADNE---FNHLISKFPSLEDLFVTRC  319 (347)
Q Consensus       280 ~~~~~~L~~L~L~--~~~~~~~~---~~~~~~~~~~L~~L~l~~c  319 (347)
                      +...++|+.++|.  ++.+.+.+   +...+...++|+.|+++..
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            3456777776663  44565544   3344557788888888764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00049  Score=52.11  Aligned_cols=14  Identities=21%  Similarity=0.112  Sum_probs=9.8

Q ss_pred             CCCcEEEeeccccC
Q 019031          284 PHLKKLDLVSVYFA  297 (347)
Q Consensus       284 ~~L~~L~L~~~~~~  297 (347)
                      .+|+.|+|+++.+.
T Consensus       103 ~~l~~L~L~~Np~~  116 (156)
T d2ifga3         103 LSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCCEEECCSSCCC
T ss_pred             ccccccccCCCccc
Confidence            35778888777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00061  Score=51.54  Aligned_cols=82  Identities=18%  Similarity=0.153  Sum_probs=50.0

Q ss_pred             ccCCCceEEEccccccchhhh----hhcCCCccEEEeeeeCCCCCceeeccCCCCCcEEEeeccccCchHHHHHHccCCC
Q 019031          235 SKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS  310 (347)
Q Consensus       235 ~~~~~L~~L~l~~~~~~~~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~  310 (347)
                      .++++|++|.+.+.. .+..+    ...+++|+.|.++.+.........+..+++|+.|+|+++.++.- -..++. ..+
T Consensus        28 ~~l~~l~~L~l~~n~-~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l-~~~~~~-~~~  104 (156)
T d2ifga3          28 PGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQ-GLS  104 (156)
T ss_dssp             CSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTC-SCC
T ss_pred             cCccccCeeecCCCc-cccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCccc-Chhhhc-ccc
Confidence            345677777776543 22222    12567788888775444332233467789999999988887641 112233 347


Q ss_pred             CCEEeecCc
Q 019031          311 LEDLFVTRC  319 (347)
Q Consensus       311 L~~L~l~~c  319 (347)
                      |+.|+|++.
T Consensus       105 l~~L~L~~N  113 (156)
T d2ifga3         105 LQELVLSGN  113 (156)
T ss_dssp             CCEEECCSS
T ss_pred             ccccccCCC
Confidence            999999864

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.73  E-value=0.00062  Score=52.12  Aligned_cols=104  Identities=13%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             CCCceEEEccccc----cchhhh---hhcCCCccEEEeeeeCCCCCce----eeccCCCCCcEEEeeccccCchHHHHH-
Q 019031          237 ASKLKIMEIRSFS----EEIEIV---EISVPSLQQLTLLFYGARRPRV----VEVARSPHLKKLDLVSVYFADNEFNHL-  304 (347)
Q Consensus       237 ~~~L~~L~l~~~~----~~~~~~---~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~-  304 (347)
                      .|+|++|+++++.    ..+..+   ....++|++|.++++.......    ..+...+.|++|+|+++.+.+.+...+ 
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            4899999999754    222222   2356889999999665543211    124567899999999999998776655 


Q ss_pred             --HccCCCCCEEeecCcC--Cc--------hhhhccCcccceEecccc
Q 019031          305 --ISKFPSLEDLFVTRCC--LP--------GKIKISSNQLKNLLFRSC  340 (347)
Q Consensus       305 --~~~~~~L~~L~l~~c~--~~--------~~~~~~~~~L~~L~l~~c  340 (347)
                        +...++|+.|+++++.  .+        .......+.|++|.++..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence              4556789999998752  11        122335678999988643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.11  E-value=0.0028  Score=48.14  Aligned_cols=116  Identities=14%  Similarity=0.158  Sum_probs=70.8

Q ss_pred             HHHHHHHhcCCCccEEEeeccCCCCccc-------cccCCCceEEEccccccchhhhhhcCCCccEEEeeeeCCCCCcee
Q 019031          206 QMVQKLASECPLLEDLCFSNCWGLKHLC-------VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVV  278 (347)
Q Consensus       206 ~~l~~i~~~cp~Le~L~l~~c~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~  278 (347)
                      +.+..+..++|.|++|.+.++..++.-.       +...++|++|++++|.-.-..+..                  ..-
T Consensus         7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~------------------L~~   68 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA------------------LAE   68 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH------------------HHH
T ss_pred             HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHH------------------HHH
Confidence            4567777888999999998755443211       223466667766666400000000                  001


Q ss_pred             eccCCCCCcEEEeeccccCchHHHHHH---ccCCCCCEEeecCcC--C-------chhhhccCcccceEeccc
Q 019031          279 EVARSPHLKKLDLVSVYFADNEFNHLI---SKFPSLEDLFVTRCC--L-------PGKIKISSNQLKNLLFRS  339 (347)
Q Consensus       279 ~~~~~~~L~~L~L~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~--~-------~~~~~~~~~~L~~L~l~~  339 (347)
                      .+...+.++.+++.++.+.+.+...+.   ...++|+.++|+.+.  .       +.......+.|++|+++.
T Consensus        69 ~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          69 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            124457788899988888877666554   567899988887542  2       112334678999998864

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0006  Score=51.94  Aligned_cols=41  Identities=29%  Similarity=0.307  Sum_probs=22.9

Q ss_pred             HHHHHhcCCCccEEEeeccCCCCccc-----cccCCCceEEEccccc
Q 019031          208 VQKLASECPLLEDLCFSNCWGLKHLC-----VSKASKLKIMEIRSFS  249 (347)
Q Consensus       208 l~~i~~~cp~Le~L~l~~c~~~~~~~-----~~~~~~L~~L~l~~~~  249 (347)
                      +..+...+|.|+.|+++++.. ..+.     +..+++|+.|+++++.
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i-~~l~~~~~~~~~l~~L~~L~Ls~N~  102 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRL-YRLDDMSSIVQKAPNLKILNLSGNE  102 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCC-CCCSGGGTHHHHSTTCCCCCCTTSC
T ss_pred             hHHHHHhCCCCCEeeCCCccc-cCCchhHHHHhhCCcccccccccCc
Confidence            445556788888888877742 2211     1234555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.00024  Score=54.27  Aligned_cols=58  Identities=24%  Similarity=0.101  Sum_probs=29.7

Q ss_pred             cccccEEEEeeeeccCCC----CcCCCCCcCEEEeeeeee-ChHHHHHHHhcCCCccEEEeeccC
Q 019031          168 ANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCW  227 (347)
Q Consensus       168 ~~~L~~L~L~~~~l~~~~----~~~~~~~L~~L~L~~~~~-~~~~l~~i~~~cp~Le~L~l~~c~  227 (347)
                      +++|++|+|++|.+....    ....+++|+.|+|+++.+ +-..+.. + ..+.|++|++.+++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Np  126 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNS  126 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTST
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCC
Confidence            556666666666654321    123456666666666665 3233332 2 23345666665543