Citrus Sinensis ID: 019032

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
MGRLKQLRIFNGVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKNHKDKEEKIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMKIETMMNKKAEEMALVRIMKRDETREWSRQPFRFTSDGSWLGLDRVSLTVSTVR
ccHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
cccHHHHHHHHHHcccccEEEEEEEcccccccHccEEEEEEccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccHHHcccHHHHHHHHHHHHHHHHHHccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEcccccEEEEEccc
MGRLKQLRIFNGVLKDKASLIKTTLSTKRQTSFIRRAILRAtthgsssppsinRIDAvissgngsrprACACIQALMDRLHGTRDTFVALKCLYTIhniitkdsfilkdqlsifptlggrnflnlsefhddsdpeswELSAWIRWYATVLEQNLTVSRVLGyhlsssdskknhkdKEEKIFALLSSDLLIEIDALVGFVQEisnvpnslhlqrNNLVYEIVRLVSEDYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMKIETMMNKKAEEMALVRIMKRDetrewsrqpfrftsdgswlgldrvSLTVSTVR
mgrlkqlrifngvlkdkaslikttlstkrqtsfIRRAILRatthgsssppsiNRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYhlsssdskknhkDKEEKIFALLSSDLLIEIDALVGFVQEISnvpnslhlqrnNLVYEIVRLVSEDYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLfvnrkkndglwhlIGETKMKIETMMNKKAEEMALVRIMKRdetrewsrqpfrftsdgswlgldrvsltvstvr
MGRLKQLRIFNGVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLsssdskknhkdkeekIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMKIETMMNKKAEEMALVRIMKRDETREWSRQPFRFTSDGSWLGLDRVSLTVSTVR
******LRIFNGVLKDKASLIKTTLSTKRQTSFIRRAILR***************************RACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHL**************KIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMKIETMMN*****MALVRIMK******WSRQPFRFTSDGSWLGLDRVSL******
*****QL*IFNGVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYH**********************SDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGE**************************************************LT***V*
MGRLKQLRIFNGVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLS**********KEEKIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMKIETMMNKKAEEMALVRIMKRDETREWSRQPFRFTSDGSWLGLDRVSLTVSTVR
****KQLRIFNGVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSD********EEKIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMKIETMMNKKAEEMALVR*********************SWLGLDRVSLTVSTVR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRLKQLRIFNGVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKNHKDKEEKIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMKIETMMNKKAEEMALVRIMKRDETREWSRQPFRFTSDGSWLGLDRVSLTVSTVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query347 2.2.26 [Sep-21-2011]
Q8L936365 Putative clathrin assembl yes no 0.988 0.939 0.401 6e-64
Q8H0W9338 Putative clathrin assembl no no 0.853 0.875 0.332 3e-28
Q9FKQ2295 Putative clathrin assembl no no 0.798 0.938 0.292 1e-22
Q8LBH2 571 Putative clathrin assembl no no 0.446 0.271 0.367 3e-16
Q9LVD8 591 Putative clathrin assembl no no 0.524 0.307 0.323 8e-16
P94017 692 Putative clathrin assembl no no 0.492 0.247 0.340 2e-15
Q9LHS0 544 Putative clathrin assembl no no 0.495 0.316 0.333 1e-14
Q8VYT2 601 Putative clathrin assembl no no 0.455 0.262 0.339 3e-14
Q8LF20 653 Putative clathrin assembl no no 0.475 0.252 0.286 7e-13
Q8S9J8 635 Probable clathrin assembl no no 0.412 0.225 0.308 9e-12
>sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2 Back     alignment and function desciption
 Score =  244 bits (624), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 145/361 (40%), Positives = 207/361 (57%), Gaps = 18/361 (4%)

Query: 1   MGRLKQLRIFNGVLKDKASLIKTTL---STKRQTSFIRRAILRATTHGSSSPPSINRIDA 57
           MGR+       G +KDKAS  K  L   +TK +T     ++LRATTH  S+PP    +  
Sbjct: 1   MGRITSFADLIGRIKDKASQSKAALVSSNTKSKTLSFHLSVLRATTHDPSTPPGNRHLAV 60

Query: 58  VISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTL 117
           ++S+G GSR  A + ++++M+RLH T D  VALK L  IH+I+    FIL+DQLS+FP  
Sbjct: 61  ILSAGTGSRATASSAVESIMERLHTTGDACVALKSLIIIHHIVKHGRFILQDQLSVFPAS 120

Query: 118 GGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKNHKDKE 177
           GGRN+L LS F D+  P  WELS+W+RWYA  LE  L+ SR++G+ +SS+ S  + ++ E
Sbjct: 121 GGRNYLKLSAFRDEKSPLMWELSSWVRWYALYLEHLLSTSRIMGFFISSTSSTIHKEEYE 180

Query: 178 EKIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISL 237
           E + +L +SDLL EIDALVG ++E   +P+       +L  +I +LV EDY     E+  
Sbjct: 181 EMVSSLTNSDLLREIDALVGLLEEACKIPDLPFSGGKSLADKITQLVGEDYVSSINELYT 240

Query: 238 RVVELDERMTSLSVDQLTLFMSALKKFEDCKERLS-LLFVNRKKN--DGLWHLIGETKMK 294
           R  E  ER  +LS       + ALK+ E CKERLS +   N K+   DG W L+ E K  
Sbjct: 241 RFNEFKERSNTLSFGDTIELVCALKRLESCKERLSEICHGNWKRGWIDGFWGLVLEVKGI 300

Query: 295 IETMMNKKAE-EMALVRIMKRDETREWSR----------QPFRFTSDGSWLGLDRVSLTV 343
           I  + +   + E ++V   KRD+  E +R           P RF+S G +  +DR +  V
Sbjct: 301 IGNLEDNYGQIEKSIVGFGKRDKGYESARFTDRLIIGYSNPVRFSS-GRFSNVDRFNFPV 359

Query: 344 S 344
           S
Sbjct: 360 S 360

Arabidopsis thaliana (taxid: 3702)
>sp|Q8H0W9|CAP17_ARATH Putative clathrin assembly protein At5g10410 OS=Arabidopsis thaliana GN=At5g10410 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKQ2|CAP18_ARATH Putative clathrin assembly protein At5g65370 OS=Arabidopsis thaliana GN=At5g65370 PE=3 SV=1 Back     alignment and function description
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function description
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function description
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function description
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
224084602353 predicted protein [Populus trichocarpa] 0.982 0.966 0.585 1e-104
225459188336 PREDICTED: putative clathrin assembly pr 0.910 0.940 0.593 5e-98
255545856336 clathrin assembly protein, putative [Ric 0.936 0.967 0.567 2e-95
356515758345 PREDICTED: putative clathrin assembly pr 0.976 0.982 0.501 4e-83
357465145337 hypothetical protein MTR_3g099670 [Medic 0.838 0.863 0.530 9e-80
356508055341 PREDICTED: putative clathrin assembly pr 0.982 1.0 0.481 1e-79
356551737347 PREDICTED: putative clathrin assembly pr 0.927 0.927 0.472 3e-74
449470086346 PREDICTED: putative clathrin assembly pr 0.936 0.939 0.452 2e-71
147780138354 hypothetical protein VITISV_009769 [Viti 0.974 0.954 0.423 3e-67
359496894354 PREDICTED: putative clathrin assembly pr 0.974 0.954 0.423 6e-67
>gi|224084602|ref|XP_002307354.1| predicted protein [Populus trichocarpa] gi|222856803|gb|EEE94350.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/357 (58%), Positives = 256/357 (71%), Gaps = 16/357 (4%)

Query: 1   MGRLKQLRIFNGVLKDKASLIKTTLSTKRQTSFIRRAILRATT-HGSSSPPSINRIDAVI 59
           MG  K+LR    +LK   S IK TLSTKR T  IR A+LRATT   SSSPPS NRI AVI
Sbjct: 1   MGHRKKLRTVIDILKCLTSNIKATLSTKRNTK-IRIAVLRATTARNSSSPPSDNRIAAVI 59

Query: 60  SSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGG 119
           S G GSR  ACA I+ALMDRLHGT++  VALKCL+TIH+II K  FILKDQLS +P+ GG
Sbjct: 60  SFGRGSRLTACALIEALMDRLHGTKNPSVALKCLFTIHSIIKKGPFILKDQLSFYPSFGG 119

Query: 120 RNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKNHKDKEEK 179
           RNFLN+S+F  DSDPE WEL++W+RWYATV+EQN  VSR LG++L+SS S  N KDKE+K
Sbjct: 120 RNFLNMSKFRQDSDPERWELASWVRWYATVIEQNFIVSRFLGHYLNSSCSSNNSKDKEDK 179

Query: 180 IFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRV 239
             ALL+ DLL E+D LV FV+ I   P+SLHLQR NLVY ++R   EDYR++QREI +RV
Sbjct: 180 ASALLNKDLLGELDVLVDFVEVICEAPDSLHLQRTNLVYAVIRYAGEDYRIVQREILIRV 239

Query: 240 VELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMKIETMM 299
           VEL +RM SLS ++LT  + +LK+FEDCKERL LLFVNR +ND LW LI   K+KI  M 
Sbjct: 240 VELKDRMASLSCNELTQLLGSLKRFEDCKERLRLLFVNRARNDALWELIRGAKLKIMEMG 299

Query: 300 NKKAEEMALVRIMKRDETREWS---------RQPFRFTSDGSWLGLDRV-SLTVSTV 346
             K    +LV++ + D + E +         RQ  R  S G WLG+DRV +LT+ST+
Sbjct: 300 KLK----SLVKMERTDGSGELTRFRERFGELRQLVRLNSGGGWLGVDRVPALTMSTM 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459188|ref|XP_002284015.1| PREDICTED: putative clathrin assembly protein At4g40080-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255545856|ref|XP_002513988.1| clathrin assembly protein, putative [Ricinus communis] gi|223547074|gb|EEF48571.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356515758|ref|XP_003526565.1| PREDICTED: putative clathrin assembly protein At4g40080-like [Glycine max] Back     alignment and taxonomy information
>gi|357465145|ref|XP_003602854.1| hypothetical protein MTR_3g099670 [Medicago truncatula] gi|355491902|gb|AES73105.1| hypothetical protein MTR_3g099670 [Medicago truncatula] gi|388509980|gb|AFK43056.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356508055|ref|XP_003522777.1| PREDICTED: putative clathrin assembly protein At4g40080-like [Glycine max] Back     alignment and taxonomy information
>gi|356551737|ref|XP_003544230.1| PREDICTED: putative clathrin assembly protein At4g40080-like [Glycine max] Back     alignment and taxonomy information
>gi|449470086|ref|XP_004152749.1| PREDICTED: putative clathrin assembly protein At4g40080-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147780138|emb|CAN73287.1| hypothetical protein VITISV_009769 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496894|ref|XP_002263086.2| PREDICTED: putative clathrin assembly protein At4g40080-like [Vitis vinifera] gi|297745712|emb|CBI41037.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
TAIR|locus:2140084365 AT4G40080 [Arabidopsis thalian 0.988 0.939 0.387 5.9e-57
TAIR|locus:2142409338 AT5G10410 [Arabidopsis thalian 0.853 0.875 0.341 1.9e-28
TAIR|locus:2168287295 AT5G65370 [Arabidopsis thalian 0.798 0.938 0.295 7.8e-23
TAIR|locus:2049587 571 AT2G01600 [Arabidopsis thalian 0.446 0.271 0.367 1.6e-16
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.452 0.226 0.357 5.8e-16
TAIR|locus:2165615 591 AT5G57200 [Arabidopsis thalian 0.757 0.445 0.273 1e-15
TAIR|locus:2182432 544 AT5G35200 [Arabidopsis thalian 0.786 0.501 0.283 6e-14
TAIR|locus:2120780 601 AT4G25940 [Arabidopsis thalian 0.458 0.264 0.325 9.5e-14
TAIR|locus:505006543 635 AT4G32285 [Arabidopsis thalian 0.412 0.225 0.308 1.6e-12
TAIR|locus:2040115 653 AT2G25430 [Arabidopsis thalian 0.412 0.218 0.308 1.7e-12
TAIR|locus:2140084 AT4G40080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 140/361 (38%), Positives = 198/361 (54%)

Query:     1 MGRLKQLRIFNGVLKDKASLIKTTL---STKRQTSFIRRAILRATTHGSSSPPSINRIDA 57
             MGR+       G +KDKAS  K  L   +TK +T     ++LRATTH  S+PP    +  
Sbjct:     1 MGRITSFADLIGRIKDKASQSKAALVSSNTKSKTLSFHLSVLRATTHDPSTPPGNRHLAV 60

Query:    58 VISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTL 117
             ++S+G GSR  A + ++++M+RLH T D  VALK L  IH+I+    FIL+DQLS+FP  
Sbjct:    61 ILSAGTGSRATASSAVESIMERLHTTGDACVALKSLIIIHHIVKHGRFILQDQLSVFPAS 120

Query:   118 GGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLXXXXXXXXXXXXX 177
             GGRN+L LS F D+  P  WELS+W+RWYA  LE  L+ SR++G+ +             
Sbjct:   121 GGRNYLKLSAFRDEKSPLMWELSSWVRWYALYLEHLLSTSRIMGFFISSTSSTIHKEEYE 180

Query:   178 XXIFALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISL 237
               + +L +SDLL EIDALVG ++E   +P+       +L  +I +LV EDY     E+  
Sbjct:   181 EMVSSLTNSDLLREIDALVGLLEEACKIPDLPFSGGKSLADKITQLVGEDYVSSINELYT 240

Query:   238 RVVELDERMTSLSVDQLTLFMSALKKFEDCKERLS-LLFVNRKKN--DGLWHLIGETKMK 294
             R  E  ER  +LS       + ALK+ E CKERLS +   N K+   DG W L+ E K  
Sbjct:   241 RFNEFKERSNTLSFGDTIELVCALKRLESCKERLSEICHGNWKRGWIDGFWGLVLEVKGI 300

Query:   295 IETMMNKKAE-EMALVRIMKRDETREWSR----------QPFRFTSDGSWLGLDRVSLTV 343
             I  + +   + E ++V   KRD+  E +R           P RF+S G +  +DR +  V
Sbjct:   301 IGNLEDNYGQIEKSIVGFGKRDKGYESARFTDRLIIGYSNPVRFSS-GRFSNVDRFNFPV 359

Query:   344 S 344
             S
Sbjct:   360 S 360
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2142409 AT5G10410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168287 AT5G65370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L936CAP16_ARATHNo assigned EC number0.40160.98840.9397yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 1e-14
pfam07651278 pfam07651, ANTH, ANTH domain 2e-08
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information 
 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 36  RAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYT 95
           +A+ +AT+H  + PP    +  +I+  + S     +   AL  RL   R+  V LK L  
Sbjct: 3   KAVKKATSHDEA-PPKDKHVRKIIAGTSSSPASIPSFASALSRRLL-DRNWVVVLKALIL 60

Query: 96  IHNIITKDSFILKDQLSIFP--TLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQ 152
           +H +       L++    F    L  R +LNLS F D S    +  SA+IR YA  L++
Sbjct: 61  LHRL-------LREGHPSFLQELLSRRGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDE 112

A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machinery for clathrin-mediated membrane budding. Length = 117
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 347
KOG0251 491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.98
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.95
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 99.85
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.28
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.19
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 98.95
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.1
KOG2056336 consensus Equilibrative nucleoside transporter pro 98.05
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.65
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.63
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 95.6
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 95.44
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 95.43
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 94.94
cd03561133 VHS VHS domain family; The VHS domain is present i 94.79
KOG2057 499 consensus Predicted equilibrative nucleoside trans 93.46
KOG2199 462 consensus Signal transducing adaptor protein STAM/ 82.5
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.2e-66  Score=521.26  Aligned_cols=269  Identities=28%  Similarity=0.389  Sum_probs=244.3

Q ss_pred             HHHhhhccccchhhhcccCCCCchhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHH
Q 019032            9 IFNGVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFV   88 (347)
Q Consensus         9 ~~~G~lKD~asi~~A~v~~~~~~~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~V   88 (347)
                      +++|++||++|+++|++++  ..+++++||+|||||+. .|||+|||++|+.+|++++++++.||++|++||++|+||+|
T Consensus         1 ~~~gaiKD~~s~~~a~v~~--~~~~l~~AV~KATsh~~-~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~V   77 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVAS--AGSDLEKAVVKATSHDD-MPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTV   77 (491)
T ss_pred             CCccccchhhhhHHHHhhh--hhhhHHHHHHhhccCCC-CCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceee
Confidence            4789999999999999976  45699999999999995 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCcchHHHHhhcccCCCCcceecCCCCCCCCCCcchhhHHHHHHHHHHHHHhHhhhhhccccccCC
Q 019032           89 ALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSD  168 (347)
Q Consensus        89 alK~LIviH~lireG~~~f~d~l~~y~s~~g~~~L~Ls~F~d~ss~~~~~~s~~VR~Ya~YL~eRl~~~r~l~~d~~~~~  168 (347)
                      |||||||||+||++|++.|.+++..+.     ..|+|++|+|++++.+|||++|||+|+.||+||+.+|+.+++|++..+
T Consensus        78 AlKsLIliH~ll~~G~~~f~~~l~~~~-----~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~  152 (491)
T KOG0251|consen   78 ALKALILIHRLLKEGDPSFEQELLSRN-----LILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVK  152 (491)
T ss_pred             hHHHHHHHHHHHhcCcHHHHHHHHhcc-----cccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            999999999999999999999995331     479999999999999999999999999999999999999999998763


Q ss_pred             CCCCCchhhhHHhhcC-hHHHHHHHHHHHHHHHHh-hcCCCcccccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 019032          169 SKKNHKDKEEKIFALL-SSDLLIEIDALVGFVQEI-SNVPNSLHLQRNNLVYEIVRLVSED----YRLIQREISLRVVEL  242 (347)
Q Consensus       169 s~~~~~~~~~~l~~L~-~~~LL~~l~~LQ~li~~l-~~~p~~~~l~~N~li~~a~~Ll~ed----Y~~~negIi~lLe~~  242 (347)
                      ...    ....++++. ++.+|+.++.||.||+++ +|+|.+.++ +|.+|++||.||++|    |+++|+||+++||+|
T Consensus       153 ~~~----~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~-~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekf  227 (491)
T KOG0251|consen  153 RGK----EKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSAL-NNGLIIEAFELVVKDSFKLYAAINDGIINLLEKF  227 (491)
T ss_pred             Ccc----cccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211    223444555 789999999999999965 999999985 999999999999777    999999999999999


Q ss_pred             HhhccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHh-hhhcCcccccchhhhhh
Q 019032          243 DERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVN-RKKNDGLWHLIGETKMK  294 (347)
Q Consensus       243 fEr~~~ms~~da~~aL~iyKrf~~q~E~L~~~f~~-r~~~~~~w~~~~~~k~~  294 (347)
                      ||    |+++||.++|+|||||.+|+|+|++||++ |...-+.|..+|++|.+
T Consensus       228 fe----m~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i  276 (491)
T KOG0251|consen  228 FE----MSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRI  276 (491)
T ss_pred             hh----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhc
Confidence            96    99999999999999999999999999999 55559999999999955

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 2e-30
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 1e-28
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 2e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  116 bits (290), Expect = 2e-30
 Identities = 47/274 (17%), Positives = 103/274 (37%), Gaps = 16/274 (5%)

Query: 2   GRLKQLRIFNGVLKDKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISS 61
           G    + +    L D+ +  + +++     S + + + +ATTH     P    +D +I  
Sbjct: 1   GSPIGIHMSGQSLTDRITAAQHSVTG----SAVSKTVCKATTH-EIMGPKKKHLDYLIQC 55

Query: 62  GNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRN 121
            N           +L +R   +    V  K L T H+++   +      L+         
Sbjct: 56  TNEMNVNIPQLADSLFERTTNSSWV-VVFKSLITTHHLMVYGNERFIQYLA-----SRNT 109

Query: 122 FLNLSEFHDDSDPESWELSAWIRWYATVLEQNLTVSRVLGYHLSSSDSKKNHKDKEEKIF 181
             NLS F D S  + +++S +IR Y+  L +     R + +     D  K  +  +  + 
Sbjct: 110 LFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAF-----DFTKVKRGADGVMR 164

Query: 182 ALLSSDLLIEIDALVGFVQEISNVPNSLHLQRNNLVYEIVRLVSEDYRLIQREISLRVVE 241
            + +  LL  +  +   +  + +   + +   N ++     L+ +D   +    +  ++ 
Sbjct: 165 TMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIIN 224

Query: 242 LDERMTSLSVDQLTLFMSALKKFEDCKERLSLLF 275
           L E+   +  +Q    +   KKF     R+S   
Sbjct: 225 LLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFL 258
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.45
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.42
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.12
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.09
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.39
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 96.3
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 96.05
3g2s_A149 C-terminal fragment of sortilin-related receptor; 95.94
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 95.79
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 95.75
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 95.54
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 95.15
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 95.07
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 94.91
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=2.4e-59  Score=450.19  Aligned_cols=265  Identities=16%  Similarity=0.165  Sum_probs=216.2

Q ss_pred             CcchhHHHHHHhhhc-cccchhhhcccCCCCchhHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHh
Q 019032            1 MGRLKQLRIFNGVLK-DKASLIKTTLSTKRQTSFIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDR   79 (347)
Q Consensus         1 m~~~~~lr~~~G~lK-D~asi~~A~v~~~~~~~dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~R   79 (347)
                      |+ +++||+++|++| |+++.            ++++||+|||+|++ +|||+|||++||.+|+++++++++++++|.+|
T Consensus         3 ~~-~~~~~~~~~a~k~~~~~~------------~l~kaV~KAT~~~~-~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R   68 (299)
T 1hx8_A            3 MA-GQTINDRLLAARHSLAGQ------------GLAKSVCKATTEEC-IGPKKKHLDYLVHCANEPNVSIPHLANLLIER   68 (299)
T ss_dssp             --------------------C------------HHHHHHHHHSCSSS-SCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             Cc-hHHHHHHHHHHhhccchh------------HHHHHHHhccCCCC-CCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence            45 578999999999 88872            58889999999996 99999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHhhcCCcchHHHHhhcccCCCCcceecCCCCCCCC-----------CCcchhhHHHHHHHH
Q 019032           80 LHGTRDTFVALKCLYTIHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDSD-----------PESWELSAWIRWYAT  148 (347)
Q Consensus        80 L~~T~~w~ValK~LIviH~lireG~~~f~d~l~~y~s~~g~~~L~Ls~F~d~ss-----------~~~~~~s~~VR~Ya~  148 (347)
                      . .|+||+|||||||++|+|||+|+|.|.+++.   +  ++++|+|++|+|.++           +.+|+|++|||+|++
T Consensus        69 ~-~~~~w~va~K~LivlH~llreG~~~~~~~l~---~--~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~  142 (299)
T 1hx8_A           69 S-QNANWVVVYKSLITTHHLMAYGNERFMQYLA---S--SNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAK  142 (299)
T ss_dssp             H-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHH---H--TTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHH
T ss_pred             c-cCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH---h--CCcccchhhhhcccccccccccccccccccchhHHHHHHHH
Confidence            6 5789999999999999999999999988884   2  346899999999765           467899999999999


Q ss_pred             HHHHHhHhhhhhccccccCCCCCCCchhhhHHhhcChHHHHHHHHHHHHHHHH-hhcCCCcccccccHHHHHHHHHHHHH
Q 019032          149 VLEQNLTVSRVLGYHLSSSDSKKNHKDKEEKIFALLSSDLLIEIDALVGFVQE-ISNVPNSLHLQRNNLVYEIVRLVSED  227 (347)
Q Consensus       149 YL~eRl~~~r~l~~d~~~~~s~~~~~~~~~~l~~L~~~~LL~~l~~LQ~li~~-l~~~p~~~~l~~N~li~~a~~Ll~ed  227 (347)
                      ||++|+.+|+.+++|+++.+  .++  .++++++|+.+.||++++.||+||++ ++|.|.+.+ .+|.++++|+.+|+.|
T Consensus       143 yL~~r~~~f~~~~~d~~~~~--~~~--~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~-~~n~~~~~Al~llv~D  217 (299)
T 1hx8_A          143 YLNEKSLSYRAMAFDFCKVK--RGK--EEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSND-LSNGVINMSFMLLFRD  217 (299)
T ss_dssp             HHHHHHHHHHHHSSCGGGC---------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGG-CCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCccccc--cCc--cccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCccc-ccchHHHHHHHHHHHH
Confidence            99999999999999987542  122  23567889988999999999999995 599998877 4999999999988666


Q ss_pred             ----HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcCcccccchhhhhh
Q 019032          228 ----YRLIQREISLRVVELDERMTSLSVDQLTLFMSALKKFEDCKERLSLLFVNRKKNDGLWHLIGETKMK  294 (347)
Q Consensus       228 ----Y~~~negIi~lLe~~fEr~~~ms~~da~~aL~iyKrf~~q~E~L~~~f~~r~~~~~~w~~~~~~k~~  294 (347)
                          |..+|+||+|+||+|||    |++.||.+||+|||||.+|+++|++||.+|+.-.-+=..||+++..
T Consensus       218 s~~lY~~i~~gi~~lLe~~fe----m~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~~~iP~L~~~  284 (299)
T 1hx8_A          218 LIRLFACYNDGIINLLEKYFD----MNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKGDIPDLTKA  284 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCCCCCCCCCCC
Confidence                88999999999999995    9999999999999999999999999999977654444668888854
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 347
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 9e-17
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 4e-16
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: Phosphoinositide-binding clathrin adaptor, N-terminal domain
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 73.8 bits (181), Expect = 9e-17
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 18/138 (13%)

Query: 36  RAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYT 95
           +++ +ATT      P    +D ++   N            L++R     +  V  K L T
Sbjct: 5   KSVCKATTE-ECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQ-NANWVVVYKSLIT 62

Query: 96  IHNIITKDSFILKDQLSIFPTLGGRNFLNLSEFHDDS-----------DPESWELSAWIR 144
            H+++   +      L+        +  NLS F D                 +++S +IR
Sbjct: 63  THHLMAYGNERFMQYLA-----SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIR 117

Query: 145 WYATVLEQNLTVSRVLGY 162
            YA  L +     R + +
Sbjct: 118 RYAKYLNEKSLSYRAMAF 135
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 99.93
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.92
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.83
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 95.89
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 95.88
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.68
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 94.56
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 93.32
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: Phosphoinositide-binding clathrin adaptor, N-terminal domain
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=7.7e-34  Score=242.77  Aligned_cols=127  Identities=20%  Similarity=0.325  Sum_probs=115.0

Q ss_pred             hHHHHHHhcCCCCCCCCCchhhHHHHHHhcCCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhcCCcchHHHHh
Q 019032           33 FIRRAILRATTHGSSSPPSINRIDAVISSGNGSRPRACACIQALMDRLHGTRDTFVALKCLYTIHNIITKDSFILKDQLS  112 (347)
Q Consensus        33 dl~~AIvKATthd~~apPK~KhV~~Il~~t~~s~~~~~~~v~~L~~RL~~T~~w~ValK~LIviH~lireG~~~f~d~l~  112 (347)
                      .|++||+|||+|++ .|||+|||++|+.+|+++++++++++++|.+|++ ++||+|++|||+++|+||++|+|.|.+++.
T Consensus         2 ~l~~aV~kAT~~~~-~~Pk~K~v~~i~~~t~~~~~~~~~i~~~L~~Rl~-~~~w~v~~K~L~llh~ll~~G~~~~~~~~~   79 (140)
T d1hx8a2           2 GLAKSVCKATTEEC-IGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQ-NANWVVVYKSLITTHHLMAYGNERFMQYLA   79 (140)
T ss_dssp             HHHHHHHHHSCSSS-SCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             cHHHHHHHhcCCCC-CCCCHHHHHHHHHHHcCCcccHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            48999999999997 9999999999999999999989999999999997 689999999999999999999999988884


Q ss_pred             hcccCCCCcceecCCCCCCCCC-----------CcchhhHHHHHHHHHHHHHhHhhhhhcccccc
Q 019032          113 IFPTLGGRNFLNLSEFHDDSDP-----------ESWELSAWIRWYATVLEQNLTVSRVLGYHLSS  166 (347)
Q Consensus       113 ~y~s~~g~~~L~Ls~F~d~ss~-----------~~~~~s~~VR~Ya~YL~eRl~~~r~l~~d~~~  166 (347)
                           +++++|+|++|+|.++.           .+|+++.|||+||+||+||+.+||.+|+|+++
T Consensus        80 -----~~~~~~~l~~f~d~~~~~~~~~~~~~~~~~~~~~~~Ir~Ya~yL~eRl~~~R~~~~D~~r  139 (140)
T d1hx8a2          80 -----SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKSLSYRAMAFDFCK  139 (140)
T ss_dssp             -----HTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG
T ss_pred             -----hCCCcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHhccCeee
Confidence                 24568999999886542           24789999999999999999999999999875
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure