Citrus Sinensis ID: 019034

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
MPPTTAVSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKETPETERPPTFLRESDDKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVSNSPED
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccccccEEEEEEcccEEEEEcEEEEEEEccccHHHHHHHHHHccccccccccEEEccccEEEccccccccccccEEEEEEEcccccccccccccEEcEEEccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcEEcccccccEEEEEccccEEEEccEEEEEEcccccHHHHHHHHHHccccccccccEEEEEEEEEEccccccccEEEEEEEEEEEEccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcEEEccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccEEEEEEEEccccc
mppttavsasssftlfrvpsswstklkptttyiqipnrffpkhptfkmtTTTIRAAVSIeketpeterpptflresddkesssssaSSVRARFEKMIRDAQDSVCQAIEktdgggkfkedvwsrpgggggisrvlqdgaiwekaGVNVSVVYGVMPPEAYRAAKaaasdekpgpipffaagissvlhpknpfaptlhfnyryfetdapkdtpgaprqwwfgggtdltpayifeedvkhfhstqksacdkfdptfyprfkkwcddYFYIkhrgerrglgglffddlnDYDQEMLLSFATECAnsvipayipiiekrkdtpftdQHKAWQQLRRgryvefnlvsnsped
mppttavsasssftlfrvpsswstklkptttyiqipnrffpkhptfkMTTTTIRAAvsieketpeterpptflresddkesssssassvRARFEKMIRDAQDSVCQAiektdgggkfkedvwsrpggggGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHstqksacdkfdptFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWqqlrrgryvefnlvsnsped
MPPTTAVSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKetpeterpptFLRESDDKEsssssassVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEayraakaaaSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHrgerrglgglFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVSNSPED
************FTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAV*****************************************************************************LQDGAIWEKAGVNVSVVYGVMPPEAYR************PIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNL*******
***************************************FPKHPTFKMTT*****************************************RFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMP*******************PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVSNSP**
***********SFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIE******************************ARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYR********EKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVSNSPED
*********************************************FKMTTTTIRAAVSIEKE***********************ASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVSNS***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPPTTAVSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKETPETERPPTFLRESDDKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVSNSPED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query347 2.2.26 [Sep-21-2011]
P35055385 Coproporphyrinogen-III ox yes no 0.951 0.857 0.768 1e-151
Q9LR75386 Coproporphyrinogen-III ox yes no 0.855 0.769 0.845 1e-148
Q7XPL2399 Coproporphyrinogen-III ox yes no 0.821 0.714 0.797 1e-140
Q42946397 Coproporphyrinogen-III ox N/A no 0.956 0.836 0.739 1e-139
Q42840391 Coproporphyrinogen-III ox N/A no 0.809 0.718 0.745 1e-123
Q9V3D2390 Coproporphyrinogen-III ox yes no 0.749 0.666 0.533 1e-85
P36551454 Coproporphyrinogen-III ox yes no 0.717 0.548 0.545 4e-83
Q3B7D0443 Coproporphyrinogen-III ox yes no 0.717 0.562 0.545 3e-81
P36552443 Coproporphyrinogen-III ox yes no 0.717 0.562 0.521 6e-78
Q9UTE2312 Probable coproporphyrinog yes no 0.734 0.817 0.5 6e-74
>sp|P35055|HEM6_SOYBN Coproporphyrinogen-III oxidase, chloroplastic OS=Glycine max GN=CPX PE=2 SV=1 Back     alignment and function desciption
 Score =  534 bits (1376), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/341 (76%), Positives = 282/341 (82%), Gaps = 11/341 (3%)

Query: 1   MPPTTAVSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIE 60
           M   + VSA S    FR     S     T T I +  R +   P+  M    +RA VSIE
Sbjct: 2   MHCASIVSAPSYAFPFR-----SGSASTTPTAISLTKRSWKPPPS--MAKGPVRATVSIE 54

Query: 61  KETPETERPPTFLRESDDKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKED 120
           KETPE  RP TFLR  D+ +SS+S    VRARFEKMIR+AQD+VC A+E  DGG +FKED
Sbjct: 55  KETPEANRPETFLRGVDEAQSSTS----VRARFEKMIREAQDTVCSALEAADGGAQFKED 110

Query: 121 VWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFAA 180
           VWSRPGGGGGISRVLQDGA+WEKAGVNVSVVYGVMPP+AYRAAK   +D+KPGP+PFFAA
Sbjct: 111 VWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGVPTDQKPGPVPFFAA 170

Query: 181 GISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFH 240
           GISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTDLTPAYIFEEDVKHFH
Sbjct: 171 GISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVKHFH 230

Query: 241 STQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATEC 300
           S QK ACDKF+PTFYPRFKKWCDDYFYIKHRGERRGLGG+FFDDLNDYDQEMLLSFATEC
Sbjct: 231 SIQKQACDKFEPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATEC 290

Query: 301 ANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLV 341
           ANSVIPAY+PIIEKRKD PF D  KAWQQLRRGRYVEFNLV
Sbjct: 291 ANSVIPAYLPIIEKRKDLPFNDHQKAWQQLRRGRYVEFNLV 331
Key enzyme in heme biosynthesis. Catalyzes the oxidative decarboxylation of propionic acid side chains of rings A and B of coproporphyrinogen III.
Glycine max (taxid: 3847)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 3
>sp|Q9LR75|HEM6_ARATH Coproporphyrinogen-III oxidase, chloroplastic OS=Arabidopsis thaliana GN=CPX PE=1 SV=1 Back     alignment and function description
>sp|Q7XPL2|HEM6_ORYSJ Coproporphyrinogen-III oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=CPX PE=2 SV=2 Back     alignment and function description
>sp|Q42946|HEM6_TOBAC Coproporphyrinogen-III oxidase, chloroplastic OS=Nicotiana tabacum GN=CPX PE=2 SV=1 Back     alignment and function description
>sp|Q42840|HEM6_HORVU Coproporphyrinogen-III oxidase, chloroplastic OS=Hordeum vulgare GN=CPX PE=2 SV=1 Back     alignment and function description
>sp|Q9V3D2|HEM6_DROME Coproporphyrinogen-III oxidase OS=Drosophila melanogaster GN=Coprox PE=1 SV=1 Back     alignment and function description
>sp|P36551|HEM6_HUMAN Coproporphyrinogen-III oxidase, mitochondrial OS=Homo sapiens GN=CPOX PE=1 SV=3 Back     alignment and function description
>sp|Q3B7D0|HEM6_RAT Coproporphyrinogen-III oxidase, mitochondrial OS=Rattus norvegicus GN=Cpox PE=2 SV=1 Back     alignment and function description
>sp|P36552|HEM6_MOUSE Coproporphyrinogen-III oxidase, mitochondrial OS=Mus musculus GN=Cpox PE=1 SV=2 Back     alignment and function description
>sp|Q9UTE2|HEM6_SCHPO Probable coproporphyrinogen-III oxidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hem13 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
225464720401 PREDICTED: coproporphyrinogen-III oxidas 0.962 0.832 0.784 1e-154
388515395398 unknown [Lotus japonicus] 0.847 0.738 0.861 1e-151
147782894345 hypothetical protein VITISV_044041 [Viti 0.815 0.820 0.880 1e-151
255554717393 coproporphyrinogen III oxidase, putative 0.818 0.722 0.880 1e-151
356553641385 PREDICTED: coproporphyrinogen-III oxidas 0.884 0.797 0.811 1e-149
462260385 RecName: Full=Coproporphyrinogen-III oxi 0.951 0.857 0.768 1e-149
297848564387 coproporphyrinogen III oxidase [Arabidop 0.942 0.844 0.772 1e-148
7431648362 coproporphyrinogen oxidase (EC 1.3.3.3) 0.832 0.798 0.865 1e-146
240254000386 Coproporphyrinogen III oxidase [Arabidop 0.855 0.769 0.845 1e-146
357495593399 Coproporphyrinogen-III oxidase [Medicago 0.965 0.839 0.772 1e-145
>gi|225464720|ref|XP_002263190.1| PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 273/348 (78%), Positives = 290/348 (83%), Gaps = 14/348 (4%)

Query: 5   TAVSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRA----AVSIE 60
           TA  +SSS TLF + SS +    P T+       F  K  + +M           AV+IE
Sbjct: 3   TATLSSSSLTLFPLSSSPTPPRIPCTSTTLTFPSFLVKPTSVRMMGRGSHILPPKAVAIE 62

Query: 61  KETPETERPPTFLRESDDKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKED 120
           KETPE ERP TFLRESD     + S SSVR RFEKMIRDAQD VCQAIE  DGGGKFKED
Sbjct: 63  KETPENERPSTFLRESD---GDNHSLSSVRGRFEKMIRDAQDCVCQAIEAADGGGKFKED 119

Query: 121 VWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAAS-------DEKPG 173
           VWSRPGGGGGISRVLQDGA+WEKAGVNVSVVYGVMPPEAYRAAK A+S       + KPG
Sbjct: 120 VWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPEAYRAAKPASSTDSSSDLNHKPG 179

Query: 174 PIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFE 233
           P+PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFE
Sbjct: 180 PVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFE 239

Query: 234 EDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEML 293
           EDVKHFHS QKSACDKFDP+FYPRFKKWCDDYFYIKHRGERRGLGG+FFDDLNDYDQEML
Sbjct: 240 EDVKHFHSVQKSACDKFDPSFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEML 299

Query: 294 LSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLV 341
           LSFATECANSV+PAY+PIIEKRKD PFTD+HKAWQQLRRGRYVEFNLV
Sbjct: 300 LSFATECANSVVPAYLPIIEKRKDVPFTDRHKAWQQLRRGRYVEFNLV 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388515395|gb|AFK45759.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|147782894|emb|CAN76809.1| hypothetical protein VITISV_044041 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255554717|ref|XP_002518396.1| coproporphyrinogen III oxidase, putative [Ricinus communis] gi|223542241|gb|EEF43783.1| coproporphyrinogen III oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356553641|ref|XP_003545162.1| PREDICTED: coproporphyrinogen-III oxidase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|462260|sp|P35055.1|HEM6_SOYBN RecName: Full=Coproporphyrinogen-III oxidase, chloroplastic; Short=Coprogen oxidase; Short=Coproporphyrinogenase; Flags: Precursor gi|414666|emb|CAA50400.1| coproporphyrinogen oxidase [Glycine max] gi|414667|emb|CAA50401.1| coproporphyrinogen oxidase [Glycine max] Back     alignment and taxonomy information
>gi|297848564|ref|XP_002892163.1| coproporphyrinogen III oxidase [Arabidopsis lyrata subsp. lyrata] gi|297338005|gb|EFH68422.1| coproporphyrinogen III oxidase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7431648|pir||T00910 coproporphyrinogen oxidase (EC 1.3.3.3) F21B7.24 - Arabidopsis thaliana Back     alignment and taxonomy information
>gi|240254000|ref|NP_171847.4| Coproporphyrinogen III oxidase [Arabidopsis thaliana] gi|13431553|sp|Q9LR75.1|HEM6_ARATH RecName: Full=Coproporphyrinogen-III oxidase, chloroplastic; Short=Coprogen oxidase; Short=Coproporphyrinogenase; AltName: Full=Protein LESION INITIATION 2; Flags: Precursor gi|9280667|gb|AAF86536.1|AC002560_29 F21B7.10 [Arabidopsis thaliana] gi|14624992|dbj|BAB61876.1| coproporphyrinogen III oxidase [Arabidopsis thaliana] gi|17221413|emb|CAD12661.1| coproporphyrinogen III oxidase [Arabidopsis thaliana] gi|332189456|gb|AEE27577.1| Coproporphyrinogen III oxidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357495593|ref|XP_003618085.1| Coproporphyrinogen-III oxidase [Medicago truncatula] gi|355519420|gb|AET01044.1| Coproporphyrinogen-III oxidase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
UNIPROTKB|P35055385 CPX "Coproporphyrinogen-III ox 0.933 0.841 0.710 2.1e-125
TAIR|locus:2825062386 LIN2 "LESION INITIATION 2" [Ar 0.953 0.857 0.696 3.9e-124
UNIPROTKB|Q42946397 CPX "Coproporphyrinogen-III ox 0.956 0.836 0.686 1.9e-122
UNIPROTKB|Q7XPL2399 CPX "Coproporphyrinogen-III ox 0.821 0.714 0.710 1.5e-113
UNIPROTKB|Q42840391 CPX "Coproporphyrinogen-III ox 0.809 0.718 0.663 7.7e-103
TAIR|locus:505006431240 hemf2 [Arabidopsis thaliana (t 0.662 0.958 0.641 9e-77
ASPGD|ASPL0000033086454 AN5130 [Emericella nidulans (t 0.766 0.585 0.508 6.5e-74
FB|FBgn0021944390 Coprox "Coproporphyrinogen oxi 0.766 0.682 0.498 8.4e-74
ZFIN|ZDB-GENE-030131-9884449 cpox "coproporphyrinogen oxida 0.706 0.545 0.539 5.3e-72
UNIPROTKB|P36551454 CPOX "Coproporphyrinogen-III o 0.717 0.548 0.513 6.1e-71
UNIPROTKB|P35055 CPX "Coproporphyrinogen-III oxidase, chloroplastic" [Glycine max (taxid:3847)] Back     alignment and assigned GO terms
 Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
 Identities = 238/335 (71%), Positives = 256/335 (76%)

Query:     7 VSASSSFTLFRVPSSWSTKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKXXXXX 66
             VSA S    FR  S+ ST    T T I +  R +   P+  M    +RA VSIEK     
Sbjct:     8 VSAPSYAFPFRSGSA-ST----TPTAISLTKRSWKPPPS--MAKGPVRATVSIEKETPEA 60

Query:    67 XXXXXFLRESDDKEXXXXXXXXVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG 126
                  FLR  D+ +        VRARFEKMIR+AQD+VC A+E  DGG +FKEDVWSRPG
Sbjct:    61 NRPETFLRGVDEAQSSTS----VRARFEKMIREAQDTVCSALEAADGGAQFKEDVWSRPG 116

Query:   127 GGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVL 186
             GGGGISRVLQDGA+WEKAGVNVSVVYGVMPP+         +D+KPGP+PFFAAGISSVL
Sbjct:   117 GGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGVPTDQKPGPVPFFAAGISSVL 176

Query:   187 HPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSA 246
             HPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTDLTPAYIFEEDVKHFHS QK A
Sbjct:   177 HPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSIQKQA 236

Query:   247 CDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIP 306
             CDKF+PTFYPRFKKWCDDYFYIKH          FFDDLNDYDQEMLLSFATECANSVIP
Sbjct:   237 CDKFEPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVIP 296

Query:   307 AYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLV 341
             AY+PIIEKRKD PF D  KAWQQLRRGRYVEFNLV
Sbjct:   297 AYLPIIEKRKDLPFNDHQKAWQQLRRGRYVEFNLV 331
GO:0042803 "protein homodimerization activity" evidence=ISS
TAIR|locus:2825062 LIN2 "LESION INITIATION 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q42946 CPX "Coproporphyrinogen-III oxidase, chloroplastic" [Nicotiana tabacum (taxid:4097)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XPL2 CPX "Coproporphyrinogen-III oxidase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q42840 CPX "Coproporphyrinogen-III oxidase, chloroplastic" [Hordeum vulgare (taxid:4513)] Back     alignment and assigned GO terms
TAIR|locus:505006431 hemf2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000033086 AN5130 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
FB|FBgn0021944 Coprox "Coproporphyrinogen oxidase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9884 cpox "coproporphyrinogen oxidase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P36551 CPOX "Coproporphyrinogen-III oxidase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XPL2HEM6_ORYSJ1, ., 3, ., 3, ., 30.79790.82130.7142yesno
Q9V3D2HEM6_DROME1, ., 3, ., 3, ., 30.53380.74920.6666yesno
Q42946HEM6_TOBAC1, ., 3, ., 3, ., 30.73960.95670.8362N/Ano
Q42840HEM6_HORVU1, ., 3, ., 3, ., 30.74570.80970.7186N/Ano
P35055HEM6_SOYBN1, ., 3, ., 3, ., 30.76830.95100.8571yesno
Q9LR75HEM6_ARATH1, ., 3, ., 3, ., 30.84560.85590.7694yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.30.691
3rd Layer1.3.3.30.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
PLN02873274 PLN02873, PLN02873, coproporphyrinogen-III oxidase 1e-160
pfam01218296 pfam01218, Coprogen_oxidas, Coproporphyrinogen III 1e-151
PRK05330300 PRK05330, PRK05330, coproporphyrinogen III oxidase 1e-128
COG0408303 COG0408, HemF, Coproporphyrinogen III oxidase [Coe 1e-116
>gnl|CDD|215471 PLN02873, PLN02873, coproporphyrinogen-III oxidase Back     alignment and domain information 
 Score =  447 bits (1152), Expect = e-160
 Identities = 176/220 (80%), Positives = 192/220 (87%), Gaps = 3/220 (1%)

Query: 125 PGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAA---SDEKPGPIPFFAAG 181
           PGGGGGISRVLQDG ++EKAGVNVSVVYG MPPEAYRAA         +  G +PFFAAG
Sbjct: 1   PGGGGGISRVLQDGNVFEKAGVNVSVVYGTMPPEAYRAATGRGSRKGGDPAGGVPFFAAG 60

Query: 182 ISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHS 241
           +SSV+HPKNP APT HFNYRYFETDAPKD PGAPRQWWFGGGTDLTP+Y+FEEDVKHFH 
Sbjct: 61  LSSVMHPKNPMAPTFHFNYRYFETDAPKDVPGAPRQWWFGGGTDLTPSYLFEEDVKHFHG 120

Query: 242 TQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECA 301
           T K  CDK DP FYPRFKKWCDDYFYIKHRGERRGLGG+FFDDLND DQE LL+FAT+ A
Sbjct: 121 TYKDVCDKHDPEFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDRDQEDLLAFATDVA 180

Query: 302 NSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLV 341
           NSV+PAY+PI+EKRKD PFT++ KAWQQLRRGRYVEFNLV
Sbjct: 181 NSVVPAYLPIVEKRKDDPFTEEQKAWQQLRRGRYVEFNLV 220

Length = 274
>gnl|CDD|216370 pfam01218, Coprogen_oxidas, Coproporphyrinogen III oxidase Back     alignment and domain information
>gnl|CDD|235413 PRK05330, PRK05330, coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>gnl|CDD|223485 COG0408, HemF, Coproporphyrinogen III oxidase [Coenzyme metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 347
KOG1518382 consensus Coproporphyrinogen III oxidase CPO/HEM13 100.0
PRK05330300 coproporphyrinogen III oxidase; Provisional 100.0
PF01218296 Coprogen_oxidas: Coproporphyrinogen III oxidase; I 100.0
COG0408303 HemF Coproporphyrinogen III oxidase [Coenzyme meta 100.0
PLN02873274 coproporphyrinogen-III oxidase 100.0
>KOG1518 consensus Coproporphyrinogen III oxidase CPO/HEM13 [Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-130  Score=929.71  Aligned_cols=328  Identities=60%  Similarity=1.029  Sum_probs=298.1

Q ss_pred             ccccceeeeecCcc---cccccCCCccccccCccccCCCCCcccceeeeccccccccCCCCCCCCcccccCCCccCCCCC
Q 019034            9 ASSSFTLFRVPSSW---STKLKPTTTYIQIPNRFFPKHPTFKMTTTTIRAAVSIEKETPETERPPTFLRESDDKESSSSS   85 (347)
Q Consensus         9 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~t~l~~~~~~~~~~~~   85 (347)
                      ++||++|..+|.-+   ++++.-+++. +   .-++. .-+.+++++.++.+ |+++++..++|.++.+..++. .+..+
T Consensus         2 ~rh~~~l~s~gtfq~~~~~rg~~srg~-~---lgtgl-~~~~~~~~ah~~~a-i~pkv~gt~~~fm~~~~sD~~-~l~~~   74 (382)
T KOG1518|consen    2 ARHSSTLLSSGTFQPFSSHRGHYSRGS-T---LGTGL-PIRNKPNLAHRCSA-IEPKVPGTERPFMAPPDSDDV-TLPSS   74 (382)
T ss_pred             CccccCCcCCCcccccccccCCCCCCc-c---cccCc-ccccccchhhhhhh-hcCCCCCcccccccCCCCCcc-cCCCC
Confidence            56788887776655   5566555552 1   12333 44456788888886 999999999999988877544 35667


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHccc
Q 019034           86 ASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKA  165 (347)
Q Consensus        86 ~~~~r~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~~~  165 (347)
                      +++||++||.+|++.|++||++||++||+.+|++|.|+|++||||||||||||+||||||||||||+|.|||+|+++|++
T Consensus        75 ~~~ir~~mE~lI~~~Qaevc~aleaidgg~kF~~D~W~r~eGGgGiscVlQDG~vFEKaGVnvSVV~G~l~p~Av~~mra  154 (382)
T KOG1518|consen   75 SSSIRAQMETLIREAQAEVCQALEAIDGGQKFKVDRWTRGEGGGGISCVLQDGNVFEKAGVNVSVVYGVLPPEAVQAMRA  154 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeeecCCCCCceEEEEccCCeeecCCceEEEEeccCCHHHHHHHHh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCC-CCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceeccccCCCCCCCChhhHHHHHHHHH
Q 019034          166 AASDEKP-GPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQK  244 (347)
Q Consensus       166 ~~~~~~~-~~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eeDa~hFH~~~K  244 (347)
                      +++..+. +.+||||+|||+||||+|||+||+|+||||||++   +.+|. ++||||||+||||+|++|||++|||+++|
T Consensus       155 ~~k~lk~~~~lpFfA~GvS~ViHP~NPhaPT~HfNYRYFE~~---~~dg~-kqWWFGGG~DlTPsyl~eeD~~hFH~~~K  230 (382)
T KOG1518|consen  155 RHKNLKPTGPLPFFAAGVSSVIHPKNPHAPTTHFNYRYFETE---NADGV-KQWWFGGGADLTPSYLFEEDGKHFHQLHK  230 (382)
T ss_pred             cccCCCCCCCCceeeccceeeeccCCCCCCceeeeeeEEEEe---cCCCc-EEEEecCCccCChhhhhhhhHHHHHHHHH
Confidence            9886554 7899999999999999999999999999999994   45565 78999999999999999999999999999


Q ss_pred             HhhhcCCCCchHHHHHHhhhhcCcCCCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHH
Q 019034          245 SACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQH  324 (347)
Q Consensus       245 ~aCD~h~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIFFDdLn~~d~e~~faF~~~vg~afl~aY~pIv~rr~~~p~te~e  324 (347)
                      +|||+|||++||+||||||+||||+||+|+|||||||||||++.|+|+.|+|+++|+++|+|||+|||+|||+++||++|
T Consensus       231 ~AcD~hdp~~YPrFKKWcDdYF~IkHR~E~RGiGGIFFDDld~~d~ee~f~fv~~Ca~avvPsYipiv~krkdmeft~~e  310 (382)
T KOG1518|consen  231 EACDKHDPTFYPRFKKWCDDYFYIKHRKERRGIGGIFFDDLDEPDPEELFSFVTDCARAVVPSYIPIVEKRKDMEFTEQE  310 (382)
T ss_pred             HHhhccCCccchhHHhhhhhheeeeeccccccccceecccCCCCCHHHHHHHHHHHHHhhccccchhhhhhcCCCcChhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcccceeeeEeeecCCCC
Q 019034          325 KAWQQLRRGRYVEFNLVSNSPED  347 (347)
Q Consensus       325 r~wQl~RRGRYVEFNLvyDRGT~  347 (347)
                      |+||||||||||||||+|||||.
T Consensus       311 k~wQ~lRRGrYvEFNliYDRGT~  333 (382)
T KOG1518|consen  311 KQWQQLRRGRYVEFNLIYDRGTK  333 (382)
T ss_pred             HHHHHHhccceEEEEEEEecCce
Confidence            99999999999999999999994

>PRK05330 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PF01218 Coprogen_oxidas: Coproporphyrinogen III oxidase; InterPro: IPR001260 Coprogen oxidase (i Back     alignment and domain information
>COG0408 HemF Coproporphyrinogen III oxidase [Coenzyme metabolism] Back     alignment and domain information
>PLN02873 coproporphyrinogen-III oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
2aex_A346 The 1.58a Crystal Structure Of Human Coproporphyrin 1e-75
1tkl_A326 Yeast Oxygen-Dependent Coproporphyrinogen Oxidase L 5e-66
1txn_A328 Crystal Structure Of Coproporphyrinogen Iii Oxidase 3e-65
1tk1_A260 Yeast Oxygen-Dependent Coproporphyrinogen Oxidase L 1e-61
3ejo_A310 Coproporphyrinogen Iii Oxidase From Leishmania Dono 9e-51
3dwr_A309 Leishmania Major Coproporphyrinogen Iii Oxidase Wit 1e-50
3e8j_A306 Coproporphyrinogen Iii Oxidase From Leishmania Naif 3e-50
1vju_A309 Coproporphyrinogen Iii Oxidase From Leishmania Majo 1e-49
>pdb|2AEX|A Chain A, The 1.58a Crystal Structure Of Human Coproporphyrinogen Oxidase Reveals The Structural Basis Of Hereditary Coproporphyria Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  279 bits (714), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 130/255 (50%), Positives = 164/255 (64%), Gaps = 6/255 (2%)
Query: 89  VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNV 148
           ++ + E +I + Q  VCQA+ + DGG  F  D W R  GGGGIS VLQDG ++EKAGV++
Sbjct: 40  MKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSI 99
Query: 149 SVVYGVMPPEXXXXXXXXXS--DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETD 206
           SVV+G +  E              K G +PF A G+SSV+HPKNP APT+HFNYRYFE +
Sbjct: 100 SVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVE 159
Query: 207 APKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYF 266
                    +QWWFGGG DLTP Y+ +ED  HFH T K ACD+  P  YP+FKKWCDDYF
Sbjct: 160 EADGN----KQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYF 215
Query: 267 YIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKA 326
           +I H          FFDDL+   +E +  F   CA +V+P+YIP+++K  D  FT Q K 
Sbjct: 216 FIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKL 275
Query: 327 WQQLRRGRYVEFNLV 341
           WQQLRRGRYVEFNL+
Sbjct: 276 WQQLRRGRYVEFNLL 290
>pdb|1TKL|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase Length = 326 Back     alignment and structure
>pdb|1TXN|A Chain A, Crystal Structure Of Coproporphyrinogen Iii Oxidase Length = 328 Back     alignment and structure
>pdb|1TK1|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase Length = 260 Back     alignment and structure
>pdb|3EJO|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Donovani Length = 310 Back     alignment and structure
>pdb|3DWR|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound Ligand Length = 309 Back     alignment and structure
>pdb|3E8J|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Naiffi Length = 306 Back     alignment and structure
>pdb|1VJU|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major Length = 309 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
2aex_A346 Coproporphyrinogen III oxidase, mitochondrial; FLA 1e-164
1vju_A309 Coproporphyrinogen III oxidase; structural genomic 1e-156
1txn_A328 Coproporphyrinogen III oxidase; structural genomic 1e-154
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens} Length = 346 Back     alignment and structure
 Score =  460 bits (1185), Expect = e-164
 Identities = 144/291 (49%), Positives = 185/291 (63%), Gaps = 7/291 (2%)

Query: 54  RAAVSIEKETPETERPPTFLRESD-DKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTD 112
                 E+E     R  +F+     D          ++ + E +I + Q  VCQA+ + D
Sbjct: 4   SLGRPEEEEDELAHRCSSFMAPPVTDLGELRRRPGDMKTKMELLILETQAQVCQALAQVD 63

Query: 113 GGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKP 172
           GG  F  D W R  GGGGIS VLQDG ++EKAGV++SVV+G +  EA +  ++     K 
Sbjct: 64  GGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSISVVHGNLSEEAAKQMRSRGKVLKT 123

Query: 173 --GPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAY 230
             G +PF A G+SSV+HPKNP APT+HFNYRYFE +          QWWFGGG DLTP Y
Sbjct: 124 KDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVEEADGNK----QWWFGGGCDLTPTY 179

Query: 231 IFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQ 290
           + +ED  HFH T K ACD+  P  YP+FKKWCDDYF+I HRGERRG+GG+FFDDL+   +
Sbjct: 180 LNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSK 239

Query: 291 EMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLV 341
           E +  F   CA +V+P+YIP+++K  D  FT Q K WQQLRRGRYVEFNL+
Sbjct: 240 EEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLL 290
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A* Length = 309 Back     alignment and structure
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A Length = 328 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
1txn_A328 Coproporphyrinogen III oxidase; structural genomic 100.0
2aex_A346 Coproporphyrinogen III oxidase, mitochondrial; FLA 100.0
1vju_A309 Coproporphyrinogen III oxidase; structural genomic 100.0
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A Back     alignment and structure
Probab=100.00  E-value=1.3e-127  Score=922.99  Aligned_cols=263  Identities=49%  Similarity=0.978  Sum_probs=241.2

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeeccccc-CCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHH
Q 019034           81 SSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSR-PGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEA  159 (347)
Q Consensus        81 ~~~~~~~~~r~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R-~~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a  159 (347)
                      +.++++++||++|++||+.||++||++||++|| ++|++|.|+| ++||||+||||+||+||||||||||+|||+++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~lQ~~Ic~~lE~~dg-~~F~~d~W~R~~~GGGG~s~Vl~~G~VFEKaGVN~S~V~G~~~p~~   82 (328)
T 1txn_A            4 PQDPRNLPIRQQMEALIRRKQAEITQGLESIDT-VKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAA   82 (328)
T ss_dssp             CCCCTTSCHHHHHHHHHHHHHHHHHHHHHTTSS-SCCEECCCCCSCCCSSSCEEEEESCSSEEEEEEEEEEEEEEECHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEecceecCCCCCCeEEEEeCCcEEEecceEEEEEeccCCHHH
Confidence            345667789999999999999999999999997 7999999999 99999999999999999999999999999999999


Q ss_pred             HHHccccccCC-C----------CCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceeccccCCCC
Q 019034          160 YRAAKAAASDE-K----------PGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTP  228 (347)
Q Consensus       160 ~~~~~~~~~~~-~----------~~~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP  228 (347)
                      +++|+++++.. .          ..+.+||||||||||||+||||||+|||||||++.   +++|....||||||+||||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~~---~~~g~~~~wWFGGG~DLTP  159 (328)
T 1txn_A           83 VSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFETW---NQDGTPQTWWFGGGADLTP  159 (328)
T ss_dssp             HHTTGGGCTTCCCC----------CCEEEEEEEEEEEEEESSTTSCEEEEEEEEEEEE---CTTSSEEEEEEEEEEEEEC
T ss_pred             HHhhcccccccccccccccccccCCCCCeEEEEeeEEEecCCCCCCceeeeEEEEEEe---cCCCCccceeecCCccCCC
Confidence            99998855432 1          45789999999999999999999999999999993   3457667899999999999


Q ss_pred             CCCChhhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhc
Q 019034          229 AYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAY  308 (347)
Q Consensus       229 ~Y~~eeDa~hFH~~~K~aCD~h~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIFFDdLn~~d~e~~faF~~~vg~afl~aY  308 (347)
                      +|+++||++|||+++|++||+||+++||+||+|||+|||||||+|+||||||||||||+.++|++|+|+++||++||+||
T Consensus       160 ~y~~~eD~~hFH~~~K~aCd~~~~~~Yp~fK~wCDeYFyi~HR~E~RGvGGIFfDdl~~~~~e~~faf~~~vg~afl~aY  239 (328)
T 1txn_A          160 SYLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSY  239 (328)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHTTCTTHHHHHEECGGGGGGGGTCCCCCCCEEEEEEEECSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHhcchhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHcccceeeeEeeecCCCC
Q 019034          309 IPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVSNSPED  347 (347)
Q Consensus       309 ~pIv~rr~~~p~te~er~wQl~RRGRYVEFNLvyDRGT~  347 (347)
                      +|||+||+++|||++||+|||+||||||||||||||||.
T Consensus       240 ~pIv~rr~~~~~te~er~~Ql~RRGRYVEFNLvyDRGT~  278 (328)
T 1txn_A          240 LTIVKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQ  278 (328)
T ss_dssp             HHHHHTTTTSCCCHHHHHHHHHHHTHHHHHC--------
T ss_pred             HHHHHHhCCCCCCHHHHHHHHhcccceEEEEeeeecCch
Confidence            999999999999999999999999999999999999993
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens} Back     alignment and structure
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 347
d1tkla_325 d.248.1.1 (A:) Coproporphyrinogen III oxidase {Bak 3e-84
d1vjua_302 d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Le 3e-79
>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Coproporphyrinogen III oxidase
superfamily: Coproporphyrinogen III oxidase
family: Coproporphyrinogen III oxidase
domain: Coproporphyrinogen III oxidase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  256 bits (654), Expect = 3e-84
 Identities = 129/272 (47%), Positives = 169/272 (62%), Gaps = 16/272 (5%)

Query: 82  SSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRP-GGGGGISRVLQDGAI 140
                  +R + E +IR  Q  + Q +E  D   KF  D W+R   GGGG S V+QDG  
Sbjct: 2   QDPRNLPIRQQMEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSMVIQDGTT 60

Query: 141 WEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPI-----------PFFAAGISSVLHPK 189
           +EK GVNVSVVYG + P A  A KA   + +                FFA G+S V+HP 
Sbjct: 61  FEKGGVNVSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPV 120

Query: 190 NPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDK 249
           NP APT H NYRYFET    +  G P+ WWFGGG DLTP+Y++EED + FH   K A DK
Sbjct: 121 NPHAPTTHLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDK 177

Query: 250 FDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYI 309
            D   YPRFKKWCD+YFYI HR E RG+GG+FFDD ++ D + +L    +C ++ +P+Y+
Sbjct: 178 HDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYL 237

Query: 310 PIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLV 341
            I+++RKD P+T + + WQ +RRGRYVEFNL+
Sbjct: 238 TIVKRRKDMPYTKEEQQWQAIRRGRYVEFNLI 269
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania major [TaxId: 5664]} Length = 302 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
d1tkla_325 Coproporphyrinogen III oxidase {Baker's yeast (Sac 100.0
d1vjua_302 Hypothetical protein Lmaj006828 {Leishmania major 100.0
>d1tkla_ d.248.1.1 (A:) Coproporphyrinogen III oxidase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Coproporphyrinogen III oxidase
superfamily: Coproporphyrinogen III oxidase
family: Coproporphyrinogen III oxidase
domain: Coproporphyrinogen III oxidase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-121  Score=878.93  Aligned_cols=258  Identities=50%  Similarity=0.996  Sum_probs=245.5

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccC-CCCCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHc
Q 019034           85 SASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRP-GGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAA  163 (347)
Q Consensus        85 ~~~~~r~~~e~~~~~lQ~~Ic~~lE~ldg~~~F~~d~W~R~-~GGGG~s~Vl~~G~VfEKaGVNvS~V~G~lpp~a~~~~  163 (347)
                      ...+||++||+||+.||++||++||++|+ ++|++|.|+|+ +||||+||||+||+||||||||||+|+|+++|+++++|
T Consensus         5 ~~~~mr~~~e~~~~~lQ~~Ic~~lE~ld~-~~F~~d~W~R~~~gGGG~s~vl~~G~VfEKaGVN~S~V~G~~~p~~a~~~   83 (325)
T d1tkla_           5 RNLPIRQQMEALIRRKQAEITQGLESIDT-VKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPAAVSAM   83 (325)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHTTSS-SCCEEEEEECGGGCEEEEEEEEESCSSEEEEEEEEEEEEEEECHHHHTTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhcC-CCceeeccccCCCCCCceEEEEcCCcEEEeeeEEEEEEEeecCHHHHHhh
Confidence            35679999999999999999999999995 68999999995 79999999999999999999999999999999999999


Q ss_pred             cccccCC-----------CCCCCCeeEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceeccccCCCCCCCC
Q 019034          164 KAAASDE-----------KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIF  232 (347)
Q Consensus       164 ~~~~~~~-----------~~~~~~f~AtGiSlViHP~NP~vPTvH~N~Ryfe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~  232 (347)
                      +++++..           ...+.+|+||||||||||+||+|||+|||||||++   .+++|.+..||||||+||||+|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~f~AtGiSlViHP~NP~vPt~H~N~R~f~~---~~~~~~~~~wWFGGG~DLTP~y~~  160 (325)
T d1tkla_          84 KADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLY  160 (325)
T ss_dssp             GGGCTTCCCCCCSSSSCCCSSCEEEEEEEEEEEEEESSTTSCEEEEEEEEEEE---ECTTSCEEEEEEEEEEEEECSSCC
T ss_pred             hcccccccCcccccccCccccCCceeEeeeeeehcccCCCcchhcccceEEEE---ecCCCCcceeEEeeeecccccccc
Confidence            9876421           12456899999999999999999999999999999   567777778999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCCCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHH
Q 019034          233 EEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPII  312 (347)
Q Consensus       233 eeDa~hFH~~~K~aCD~h~~~~Y~~fKkwCD~YFyIpHR~E~RGIGGIFFDdLn~~d~e~~faF~~~vg~afl~aY~pIv  312 (347)
                      +||++|||+++|++||+|++++|++||+|||+|||||||+|+|||||||||||++.++|++|+|+++||++||++|+|||
T Consensus       161 ~eD~~~fH~~lK~~Cd~~~~~~Y~~fKk~CD~YFylpHR~E~RGvGGIFfD~l~~~~~e~~f~f~~~vg~~fl~~Y~~Iv  240 (325)
T d1tkla_         161 EEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIV  240 (325)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTEEGGGTEESSCCEEEEEEECSSCHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccCCHHHHHHHHHHhhhhcccccccccccchhhhhhhhcccchHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCHHHHHHHHHcccceeeeEeeecCCC
Q 019034          313 EKRKDTPFTDQHKAWQQLRRGRYVEFNLVSNSPE  346 (347)
Q Consensus       313 ~rr~~~p~te~er~wQl~RRGRYVEFNLvyDRGT  346 (347)
                      +||++++||++||+|||+||||||||||||||||
T Consensus       241 ~kr~~~~~t~~~r~~Ql~rRGRYvEFNLlyDRGT  274 (325)
T d1tkla_         241 KRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGT  274 (325)
T ss_dssp             HTTTTSCCCHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhccccccHHHHHHHHHhCCceEEEEEEeecCc
Confidence            9999999999999999999999999999999998
>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure