Citrus Sinensis ID: 019043

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFSPLASTGETETTETQEEIQEPQIEESSDGAVGIEDGTSDDDSSGAASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPSEGEAAVVETADSSTEEVEAESS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccccEEEEEccccccccEEccccEEEEccccccccccccccccccccccccccccccccccccc
ccEEEEccccccccccccccccccccccccccccccEEcccccccccccHccccccccccEEEEEEcccccccccccccccccccccEcccccccccccccccccccccccccccccHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccHHHHHHHEEccccccccccEEEEEcccEEEccEEEEcEEEEEEcccccccccccccccccccccccccccccccccccc
matviktppfhasslpatraapislkspkpicLSFRQRLIstsrlyhrsnslrfvsvqslrfikfsplastgetettetqeeiqepqieessdgavgiedgtsdddssgaasddtsdaeeaptSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSlgvvpvetvgnpfdpllHEAIMredstefdegVIIEEFRKGfklgdrllrpsmvkvsagpgpakpkeeqpsegeaAVVEtadssteeveaess
matviktppfhasslpatraapislkspkpICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFsplastgetettetqeeiqepqieessdgavGIEDGTSDDDSSGAASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLksfedekidlERKVVnlseelsaerarilrisadfdnfrkrtEKERLslvtnaqgeVMERLLQVLDNFERAKTQikvqtegeekinNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRkgfklgdrllRPSMVkvsagpgpakpkeeqpsegeAAVVEtadssteeveaess
MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFSPLASTGetettetqeeiqepqieeSSDGAVGIEdgtsdddssgaasddtsdaeeaPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPSEGEAAVVETADSSTEEVEAESS
*****************************PICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFS*********************************************************************************************IDLERKVVNL*******RARILRISADFDNFR*******LSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRL*********************************************
********PF*******************************************************************************************************************************************************************SAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKT**********KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVK**************************************
MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFSPLA**********************SDGAVGIED********************APTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVK**************************************
*ATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFSPLA******************************************************SFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAG**********************************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
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MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQRLISTSRLYHRSNSLRFVSVQSLRFIKFSPLASTGETETTETQEEIQEPQIEESSDGAVGIEDGTSDDDSSGAASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxILRISADFDNFRKRTEKERLSLVTNAQGEVxxxxxxxxxxxxxxxxxxxxxTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPSEGEAAVVETADSSTEEVEAESS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query347 2.2.26 [Sep-21-2011]
Q8DJB3252 Protein GrpE OS=Thermosyn yes no 0.593 0.817 0.402 4e-38
A5GHN3240 Protein GrpE OS=Synechoco yes no 0.590 0.854 0.402 1e-37
A9B9L4247 Protein GrpE OS=Prochloro yes no 0.475 0.668 0.430 7e-36
Q8YUA7248 Protein GrpE OS=Nostoc sp yes no 0.475 0.665 0.454 1e-35
Q3MG83248 Protein GrpE OS=Anabaena yes no 0.475 0.665 0.454 1e-35
Q46I46259 Protein GrpE OS=Prochloro yes no 0.521 0.698 0.420 2e-35
A2BZB9259 Protein GrpE OS=Prochloro yes no 0.478 0.640 0.433 3e-35
Q3B0Y4224 Protein GrpE OS=Synechoco yes no 0.484 0.75 0.426 4e-35
A2C5L7237 Protein GrpE OS=Prochloro yes no 0.435 0.637 0.471 5e-35
Q7V9C9237 Protein GrpE OS=Prochloro yes no 0.573 0.839 0.401 6e-35
>sp|Q8DJB3|GRPE_THEEB Protein GrpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1 Back     alignment and function desciption
 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 128/206 (62%)

Query: 109 GAASDDTSDAEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVN 168
           G  + DT D  +   +  +E +++  EA    +D  +    A      ++   LE    +
Sbjct: 30  GEITPDTPDTVDKVENTPVENVENPAEATPGEEDQASEATSANAADLLEQIAALEAAKAS 89

Query: 169 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIK 228
           LS+ +    ++ +R++ADF+NFRKRT++E+  L    +  V+  LL V+D+FE A+T I+
Sbjct: 90  LSQVVEERNSQYIRLAADFENFRKRTQREKEELELQIKCSVIADLLPVVDSFELARTHIQ 149

Query: 229 VQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVI 288
            +TE EEKI+ SYQ +YKQLVE L  +GV  ++  G PFDP LHEA++RE + E  EG +
Sbjct: 150 TETEAEEKIHRSYQGVYKQLVECLKRIGVSAMQAKGKPFDPNLHEAVLREATNEHPEGTV 209

Query: 289 IEEFRKGFKLGDRLLRPSMVKVSAGP 314
           IEE ++G+ LGDR+LR +MVKV+A P
Sbjct: 210 IEELKRGYMLGDRVLRHAMVKVAAPP 235
Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with dnaK and grpE. It is the nucleotide exchange factor for dnaK and may function as a thermosensor. Unfolded proteins bind initially to dnaJ; upon interaction with the dnaJ-bound protein, dnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from dnaK; ATP binding to dnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between dnaJ, dnaK and grpE are required for fully efficient folding.
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
>sp|A5GHN3|GRPE_SYNPW Protein GrpE OS=Synechococcus sp. (strain WH7803) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|A9B9L4|GRPE_PROM4 Protein GrpE OS=Prochlorococcus marinus (strain MIT 9211) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q8YUA7|GRPE_NOSS1 Protein GrpE OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q3MG83|GRPE_ANAVT Protein GrpE OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q46I46|GRPE_PROMT Protein GrpE OS=Prochlorococcus marinus (strain NATL2A) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|A2BZB9|GRPE_PROM1 Protein GrpE OS=Prochlorococcus marinus (strain NATL1A) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q3B0Y4|GRPE_SYNS9 Protein GrpE OS=Synechococcus sp. (strain CC9902) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|A2C5L7|GRPE_PROM3 Protein GrpE OS=Prochlorococcus marinus (strain MIT 9303) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q7V9C9|GRPE_PROMM Protein GrpE OS=Prochlorococcus marinus (strain MIT 9313) GN=grpE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
224126029342 predicted protein [Populus trichocarpa] 0.962 0.976 0.658 1e-110
225439145338 PREDICTED: protein grpE-like [Vitis vini 0.945 0.970 0.649 1e-109
255580248356 Protein grpE, putative [Ricinus communis 0.971 0.946 0.632 1e-106
356504248335 PREDICTED: protein grpE-like [Glycine ma 0.902 0.934 0.624 1e-102
356571814338 PREDICTED: protein grpE-like [Glycine ma 0.899 0.923 0.633 1e-101
449453123335 PREDICTED: protein GrpE-like [Cucumis sa 0.953 0.988 0.596 6e-97
449488273335 PREDICTED: protein GrpE-like [Cucumis sa 0.953 0.988 0.596 7e-97
357508959335 Protein grpE [Medicago truncatula] gi|35 0.876 0.907 0.606 1e-96
147780431369 hypothetical protein VITISV_011922 [Viti 0.867 0.815 0.585 4e-96
30686476326 molecular chaperone GrpE [Arabidopsis th 0.893 0.950 0.587 2e-86
>gi|224126029|ref|XP_002319738.1| predicted protein [Populus trichocarpa] gi|222858114|gb|EEE95661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/346 (65%), Positives = 266/346 (76%), Gaps = 12/346 (3%)

Query: 1   MATVIKTPPFHASSLPATRAAPISLKSPKPICLSF---RQRLISTSRLYHRSNSLRFVSV 57
           MATVIKTPPF A  +     + ISLK   P+CLSF     R I    L    NSLRF + 
Sbjct: 1   MATVIKTPPFSAPRI--INNSSISLKYANPLCLSFSHNNNRSIPNFSLAK--NSLRFPTK 56

Query: 58  QSLRFIKFSPLASTGETETTETQEEIQEPQIEESSDGAVGIEDGTSDDDSSGAASDDTSD 117
            SLRF+KF P +S GETETTET+E IQEP+IE+SSDGAV +ED  S ++ + +     +D
Sbjct: 57  PSLRFVKFVPFSSQGETETTETEETIQEPEIEDSSDGAVEVEDAASSEEVASSEE--VAD 114

Query: 118 AEEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAER 177
           AE+  +S +M +L+SYKEALASND++  AEIEA LKS EDEKID ERKV +L+EELS E+
Sbjct: 115 AEDT-SSVVMASLRSYKEALASNDESIIAEIEAFLKSVEDEKIDNERKVASLTEELSIEK 173

Query: 178 ARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKI 237
            R+LRISADFDNFRKRTE+ERLSLVTNAQGEV+E LL VLDNFERAKTQIK  TEGEEKI
Sbjct: 174 ERVLRISADFDNFRKRTERERLSLVTNAQGEVVENLLSVLDNFERAKTQIKTATEGEEKI 233

Query: 238 NNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFK 297
           NNSYQ+IYKQ +EIL SLGVVPVET+G PFDP+LHEAIMREDS  F+EG ++EE+RKGFK
Sbjct: 234 NNSYQNIYKQFMEILVSLGVVPVETIGKPFDPMLHEAIMREDSDAFEEGTVLEEYRKGFK 293

Query: 298 LGDRLLRPSMVKVSAGPGPAKPK--EEQPSEGEAAVVETADSSTEE 341
           LGDRLLRPSMVKVSAGPGP KP+  EE   E EA    +   STEE
Sbjct: 294 LGDRLLRPSMVKVSAGPGPVKPEQVEESQEEAEATSGTSEGGSTEE 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439145|ref|XP_002267243.1| PREDICTED: protein grpE-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255580248|ref|XP_002530954.1| Protein grpE, putative [Ricinus communis] gi|223529469|gb|EEF31426.1| Protein grpE, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356504248|ref|XP_003520909.1| PREDICTED: protein grpE-like [Glycine max] Back     alignment and taxonomy information
>gi|356571814|ref|XP_003554067.1| PREDICTED: protein grpE-like [Glycine max] Back     alignment and taxonomy information
>gi|449453123|ref|XP_004144308.1| PREDICTED: protein GrpE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449488273|ref|XP_004157987.1| PREDICTED: protein GrpE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357508959|ref|XP_003624768.1| Protein grpE [Medicago truncatula] gi|355499783|gb|AES80986.1| Protein grpE [Medicago truncatula] Back     alignment and taxonomy information
>gi|147780431|emb|CAN65730.1| hypothetical protein VITISV_011922 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30686476|ref|NP_850840.1| molecular chaperone GrpE [Arabidopsis thaliana] gi|4583546|emb|CAB40381.1| GrpE protein [Arabidopsis thaliana] gi|9759048|dbj|BAB09570.1| GrpE protein [Arabidopsis thaliana] gi|332005076|gb|AED92459.1| molecular chaperone GrpE [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query347
TAIR|locus:2175926326 EMB1241 "embryo defective 1241 0.933 0.993 0.555 2.9e-80
TAIR|locus:2035962279 AT1G36390 [Arabidopsis thalian 0.564 0.702 0.48 2.3e-46
TIGR_CMR|BA_4540188 BA_4540 "GrpE protein" [Bacill 0.489 0.904 0.346 3.2e-26
TIGR_CMR|CHY_0414194 CHY_0414 "grpE protein" [Carbo 0.438 0.783 0.4 2e-24
TIGR_CMR|CJE_0849175 CJE_0849 "co-chaperone protein 0.452 0.897 0.331 1.7e-18
TIGR_CMR|GSU_0032200 GSU_0032 "GrpE protein" [Geoba 0.510 0.885 0.314 9.5e-18
TIGR_CMR|DET_1400187 DET_1400 "co-chaperone protein 0.458 0.850 0.317 1.6e-17
TIGR_CMR|SO_1524206 SO_1524 "heat shock protein Gr 0.521 0.878 0.301 8.6e-17
UNIPROTKB|O30862200 grpE "Protein GrpE" [Vibrio ch 0.449 0.78 0.286 8e-15
UNIPROTKB|P32724235 grpE "Protein GrpE" [Mycobacte 0.461 0.680 0.329 8e-15
TAIR|locus:2175926 EMB1241 "embryo defective 1241" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 194/349 (55%), Positives = 229/349 (65%)

Query:     1 MATVIKTPPFHASSLPATRAAPISLKSPKPICLSFRQ-RLISTSRLYHRSNSLRFVSV-Q 58
             MA ++KTP  H +  P    AP S+   KP C+SF   R +S S L  R+ SLR VS   
Sbjct:     1 MAGLLKTPSLHLT--PTLLHAP-SVPF-KPFCVSFAGGRNVSVS-LSRRA-SLRSVSSGY 54

Query:    59 SLRFIKFSPLASTGXXXXXXXXXXXXXXXXXXSSDGAVGIEXXXXXXXXXXXXXXXXXXX 118
              LR +   P AS                     +DGAV +E                   
Sbjct:    55 PLRLLNLVPFAS--GEAETTETEVESNEPEVQETDGAVDVENENASAEEGEAEEEEA--- 109

Query:   119 XXXPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERA 178
                  + I   L+SYKEALA N++ K AEIEA LKS EDEK  L  KV +LS ELS ER 
Sbjct:   110 -----AVITALLKSYKEALADNNEGKIAEIEASLKSIEDEKFLLADKVASLSNELSVERD 164

Query:   179 RILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN 238
             R++RISADFDNFRKRTE+ERL+LV+NAQGEV+E LL VLDNFERAK+QIKV+TEGEEK+ 
Sbjct:   165 RLIRISADFDNFRKRTERERLNLVSNAQGEVVENLLAVLDNFERAKSQIKVETEGEEKVT 224

Query:   239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKL 298
             NSYQSIYKQ VEILGSLGV+ VETVG  FDP+LHEAIMREDS E++EG+++EE+RKGF L
Sbjct:   225 NSYQSIYKQFVEILGSLGVIHVETVGKQFDPMLHEAIMREDSAEYEEGIVLEEYRKGFLL 284

Query:   299 GDRLLRPSMVKVSAGPGPAKPKEEQPSEGEAAVVETADSSTEEVEAESS 347
             G+RLLRPSMVKVSAGPGP KP E   +EGE A   TA  S EE E+ SS
Sbjct:   285 GERLLRPSMVKVSAGPGPEKPLE---AEGEEA---TAQGSAEE-ESSSS 326
GO:0000774 "adenyl-nucleotide exchange factor activity" evidence=IEA
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0042803 "protein homodimerization activity" evidence=IEA
GO:0051087 "chaperone binding" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0005507 "copper ion binding" evidence=IDA
TAIR|locus:2035962 AT1G36390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4540 BA_4540 "GrpE protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0414 CHY_0414 "grpE protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0849 CJE_0849 "co-chaperone protein GrpE" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0032 GSU_0032 "GrpE protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1400 DET_1400 "co-chaperone protein GrpE" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1524 SO_1524 "heat shock protein GrpE" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|O30862 grpE "Protein GrpE" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
UNIPROTKB|P32724 grpE "Protein GrpE" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
PRK14143238 PRK14143, PRK14143, heat shock protein GrpE; Provi 7e-56
cd00446137 cd00446, GrpE, GrpE is the adenine nucleotide exch 8e-47
pfam01025165 pfam01025, GrpE, GrpE 3e-45
COG0576193 COG0576, GrpE, Molecular chaperone GrpE (heat shoc 2e-43
PRK14140191 PRK14140, PRK14140, heat shock protein GrpE; Provi 6e-37
PRK14160211 PRK14160, PRK14160, heat shock protein GrpE; Provi 2e-26
PRK14145196 PRK14145, PRK14145, heat shock protein GrpE; Provi 2e-22
PRK14153194 PRK14153, PRK14153, heat shock protein GrpE; Provi 5e-22
PRK14158194 PRK14158, PRK14158, heat shock protein GrpE; Provi 7e-20
PRK14164218 PRK14164, PRK14164, heat shock protein GrpE; Provi 2e-19
PRK14151176 PRK14151, PRK14151, heat shock protein GrpE; Provi 4e-19
PRK14149191 PRK14149, PRK14149, heat shock protein GrpE; Provi 1e-17
PRK14150193 PRK14150, PRK14150, heat shock protein GrpE; Provi 3e-15
PRK14142223 PRK14142, PRK14142, heat shock protein GrpE; Provi 3e-15
PRK14162194 PRK14162, PRK14162, heat shock protein GrpE; Provi 1e-14
PRK14159176 PRK14159, PRK14159, heat shock protein GrpE; Provi 3e-14
PRK14147172 PRK14147, PRK14147, heat shock protein GrpE; Provi 4e-14
PRK14163214 PRK14163, PRK14163, heat shock protein GrpE; Provi 3e-13
PRK14141209 PRK14141, PRK14141, heat shock protein GrpE; Provi 2e-12
PRK14144199 PRK14144, PRK14144, heat shock protein GrpE; Provi 6e-12
PRK14155208 PRK14155, PRK14155, heat shock protein GrpE; Provi 3e-11
PRK10325197 PRK10325, PRK10325, heat shock protein GrpE; Provi 3e-10
PRK14161178 PRK14161, PRK14161, heat shock protein GrpE; Provi 1e-09
PRK14146215 PRK14146, PRK14146, heat shock protein GrpE; Provi 2e-09
PRK14156177 PRK14156, PRK14156, heat shock protein GrpE; Provi 4e-09
PRK14154208 PRK14154, PRK14154, heat shock protein GrpE; Provi 1e-08
PRK14148195 PRK14148, PRK14148, heat shock protein GrpE; Provi 1e-08
PRK14139185 PRK14139, PRK14139, heat shock protein GrpE; Provi 2e-07
PRK14157227 PRK14157, PRK14157, heat shock protein GrpE; Provi 6e-07
>gnl|CDD|237624 PRK14143, PRK14143, heat shock protein GrpE; Provisional Back     alignment and domain information 
 Score =  181 bits (462), Expect = 7e-56
 Identities = 90/250 (36%), Positives = 138/250 (55%), Gaps = 15/250 (6%)

Query: 77  TETQEEIQEPQIEESSDGAVGIEDGTSDDDSSGAASDDTSDAEEAPTSFIMETLQSYKEA 136
           T  Q+ ++      S   A      +S++ +   A     + + A      ++       
Sbjct: 2   TPEQDPLEVKLAVISESEAEDNSPESSEEVTEQEAELTNPEGDAAEAESSPDS------- 54

Query: 137 LASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEK 196
             S     AA+  A L         LE+++ +L +EL    ++ +RI+ADFDNFRKRT +
Sbjct: 55  -GSAASETAADNAARLA-------QLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106

Query: 197 ERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLG 256
           E+  L    +   +  +L V+DNFERA+ Q+K + E  + ++ SYQ +YKQLV++L  LG
Sbjct: 107 EQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLKRLG 166

Query: 257 VVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGP 316
           V P+  VG  FDP LHEA++RE S E  E V++EE ++G+ LG R+LR +MVKVS GPGP
Sbjct: 167 VSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRVLRHAMVKVSMGPGP 226

Query: 317 AKPKEEQPSE 326
           + P EE  + 
Sbjct: 227 SSPAEEDQAT 236

Length = 238
>gnl|CDD|238252 cd00446, GrpE, GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases Back     alignment and domain information
>gnl|CDD|216249 pfam01025, GrpE, GrpE Back     alignment and domain information
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237632 PRK14164, PRK14164, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172640 PRK14151, PRK14151, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237623 PRK14142, PRK14142, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172647 PRK14159, PRK14159, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237625 PRK14147, PRK14147, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184546 PRK14163, PRK14163, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172630 PRK14141, PRK14141, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237627 PRK14155, PRK14155, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|182379 PRK10325, PRK10325, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237630 PRK14161, PRK14161, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172635 PRK14146, PRK14146, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237626 PRK14154, PRK14154, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172637 PRK14148, PRK14148, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237621 PRK14139, PRK14139, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184543 PRK14157, PRK14157, heat shock protein GrpE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 347
PRK14143238 heat shock protein GrpE; Provisional 100.0
PRK14155208 heat shock protein GrpE; Provisional 100.0
PRK14161178 heat shock protein GrpE; Provisional 100.0
PRK14151176 heat shock protein GrpE; Provisional 100.0
PRK14148195 heat shock protein GrpE; Provisional 100.0
PRK14141209 heat shock protein GrpE; Provisional 100.0
PRK14153194 heat shock protein GrpE; Provisional 100.0
PRK14163214 heat shock protein GrpE; Provisional 100.0
PRK14147172 heat shock protein GrpE; Provisional 100.0
COG0576193 GrpE Molecular chaperone GrpE (heat shock protein) 100.0
PRK14139185 heat shock protein GrpE; Provisional 100.0
PRK14145196 heat shock protein GrpE; Provisional 100.0
PRK14150193 heat shock protein GrpE; Provisional 100.0
PRK14162194 heat shock protein GrpE; Provisional 100.0
PRK14160211 heat shock protein GrpE; Provisional 100.0
PRK14158194 heat shock protein GrpE; Provisional 100.0
PRK14144199 heat shock protein GrpE; Provisional 100.0
PRK10325197 heat shock protein GrpE; Provisional 100.0
PRK14140191 heat shock protein GrpE; Provisional 100.0
PRK14146215 heat shock protein GrpE; Provisional 100.0
PRK14154208 heat shock protein GrpE; Provisional 100.0
PRK14159176 heat shock protein GrpE; Provisional 100.0
PRK14149191 heat shock protein GrpE; Provisional 100.0
PRK14157227 heat shock protein GrpE; Provisional 100.0
PRK14156177 heat shock protein GrpE; Provisional 100.0
PRK14142223 heat shock protein GrpE; Provisional 100.0
PRK14164218 heat shock protein GrpE; Provisional 100.0
cd00446137 GrpE GrpE is the adenine nucleotide exchange facto 100.0
PF01025165 GrpE: GrpE; InterPro: IPR000740 Molecular chaperon 100.0
KOG3003236 consensus Molecular chaperone of the GrpE family [ 100.0
KOG3003236 consensus Molecular chaperone of the GrpE family [ 94.67
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 92.08
COG2433652 Uncharacterized conserved protein [Function unknow 90.29
PTZ00464211 SNF-7-like protein; Provisional 89.88
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 89.83
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 89.7
PRK11637 428 AmiB activator; Provisional 89.63
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 89.35
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 89.11
COG3883265 Uncharacterized protein conserved in bacteria [Fun 88.77
PF03938158 OmpH: Outer membrane protein (OmpH-like); InterPro 88.6
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 88.48
PF0472856 LPP: Lipoprotein leucine-zipper; InterPro: IPR0068 87.87
cd07627216 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of 87.34
KOG1962216 consensus B-cell receptor-associated protein and r 87.27
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 86.48
PF0537755 FlaC_arch: Flagella accessory protein C (FlaC); In 86.23
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 86.0
PF13805271 Pil1: Eisosome component PIL1; PDB: 3PLT_B. 85.86
COG3883265 Uncharacterized protein conserved in bacteria [Fun 85.27
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 85.16
PRK14143238 heat shock protein GrpE; Provisional 84.57
PRK14163214 heat shock protein GrpE; Provisional 84.03
PF06120301 Phage_HK97_TLTM: Tail length tape measure protein; 83.89
PF10481 307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 83.47
PRK13169110 DNA replication intiation control protein YabA; Re 82.41
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 82.12
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 81.79
PRK11637 428 AmiB activator; Provisional 81.67
COG4942 420 Membrane-bound metallopeptidase [Cell division and 81.31
KOG4603201 consensus TBP-1 interacting protein [Signal transd 81.27
cd07664234 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S 81.24
PRK13729 475 conjugal transfer pilus assembly protein TraB; Pro 81.19
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 81.07
KOG2856472 consensus Adaptor protein PACSIN [Signal transduct 80.98
COG4467114 Regulator of replication initiation timing [Replic 80.85
COG4026290 Uncharacterized protein containing TOPRIM domain, 80.68
>PRK14143 heat shock protein GrpE; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1e-47  Score=360.45  Aligned_cols=166  Identities=47%  Similarity=0.809  Sum_probs=151.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhhh
Q 019043          160 IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINN  239 (347)
Q Consensus       160 ~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~e  239 (347)
                      ..|+.++..|++++++++++|+|++|||+|||||+.||++++++|++++|+++||||+|||+||+.++.........+.+
T Consensus        70 ~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~  149 (238)
T PRK14143         70 AQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHR  149 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHHHH
Confidence            34666778888999999999999999999999999999999999999999999999999999999887544444567899


Q ss_pred             HHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecCCCCCCC
Q 019043          240 SYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKP  319 (347)
Q Consensus       240 g~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P~~~~~  319 (347)
                      ||+||+++|.++|+++||+.|+++|++|||++|+||++++++++++|+|++|+|+||+|||||||||||+|+++|+|..+
T Consensus       150 Gve~i~k~l~~~L~k~GV~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRpA~V~Vsk~~~~~~~  229 (238)
T PRK14143        150 SYQGLYKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRVLRHAMVKVSMGPGPSSP  229 (238)
T ss_pred             HHHHHHHHHHHHHHHCCCeeeCCCCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCEecccceEEECCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             CCCCCC
Q 019043          320 KEEQPS  325 (347)
Q Consensus       320 ~~~~~~  325 (347)
                      .+..+.
T Consensus       230 ~~~~~~  235 (238)
T PRK14143        230 AEEDQA  235 (238)
T ss_pred             CCcccc
Confidence            654443

>PRK14155 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14161 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14151 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14148 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14141 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14153 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14163 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14147 heat shock protein GrpE; Provisional Back     alignment and domain information
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14139 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14145 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14150 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14162 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14160 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14158 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14144 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK10325 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14140 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14146 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14154 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14159 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14149 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14157 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14156 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14142 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14164 heat shock protein GrpE; Provisional Back     alignment and domain information
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases Back     alignment and domain information
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP Back     alignment and domain information
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct [] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK14143 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14163 heat shock protein GrpE; Provisional Back     alignment and domain information
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12) Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms] Back     alignment and domain information
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 Back     alignment and domain information
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair] Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
4ani_A213 Structural Basis For The Intermolecular Communicati 2e-27
3a6m_A177 Crystal Structure Of Grpe From Thermus Thermophilus 1e-13
1dkg_A197 Crystal Structure Of The Nucleotide Exchange Factor 2e-10
>pdb|4ANI|A Chain A, Structural Basis For The Intermolecular Communication Between Dnak And Grpe In The Dnak Chaperone System From Geobacillus Kaustophilus Hta426 Length = 213 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 94/149 (63%), Gaps = 5/149 (3%)
Query: 165 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAK 224
           ++  L  +LS    R LR+ ADF+NFR+RT +E  +        +   LL VLDNFERA 
Sbjct: 67  QIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA- 125
Query: 225 TQIKVQTEGEE--KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTE 282
             +K++T+ E+   I    + +Y+ LV+ L   GV  +E VG PFDP LH+A+M+ ++  
Sbjct: 126 --LKIETDNEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEG 183
Query: 283 FDEGVIIEEFRKGFKLGDRLLRPSMVKVS 311
           ++   ++EE +KG+KL DR+LRP+MVKVS
Sbjct: 184 YEPNTVVEELQKGYKLKDRVLRPAMVKVS 212
>pdb|3A6M|A Chain A, Crystal Structure Of Grpe From Thermus Thermophilus Hb8 Length = 177 Back     alignment and structure
>pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 197 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query347
3a6m_A177 Protein GRPE, HSP-70 cofactor; coiled-coil, four-h 4e-51
4ani_A213 Protein GRPE; chaperone cycle, complementary assay 8e-46
1dkg_A197 Nucleotide exchange factor GRPE; HSP70, GRPE, nucl 6e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus} Length = 177 Back     alignment and structure
 Score =  167 bits (424), Expect = 4e-51
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 6/181 (3%)

Query: 141 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLS 200
           +      +E  L++   E   LE ++    EEL   + + LR+ ADFDN+RKR E+E  +
Sbjct: 3   ERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKA 62

Query: 201 LVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPV 260
                  + +  LL VLD+ +RA   ++      E I    ++I      IL  LGV  V
Sbjct: 63  REREGVLKALRALLPVLDDLDRA---LEFAEASPESIRQGVRAIRDGFFRILAGLGVEEV 119

Query: 261 ETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPK 320
              G  FDP  HEA+        + G + + F++GF++G+ L+RP+ V V          
Sbjct: 120 PGEGEAFDPRYHEAVGLLPG---EPGKVAKVFQRGFRMGEALVRPARVAVGEEKREEADL 176

Query: 321 E 321
           E
Sbjct: 177 E 177
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Length = 213 Back     alignment and structure
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1 Length = 197 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
4ani_A213 Protein GRPE; chaperone cycle, complementary assay 100.0
3a6m_A177 Protein GRPE, HSP-70 cofactor; coiled-coil, four-h 100.0
1dkg_A197 Nucleotide exchange factor GRPE; HSP70, GRPE, nucl 100.0
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.51
3swy_A46 Cyclic nucleotide-gated cation channel alpha-3; co 88.74
3swf_A74 CGMP-gated cation channel alpha-1; coiled-coil, as 88.04
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 88.01
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 87.44
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 87.33
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 86.51
3etw_A119 Adhesin A; antiparallel helix-loop-helix, leucine 85.11
3he5_A49 Synzip1; heterodimeric coiled-coil, de novo protei 85.05
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 84.99
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 83.84
4emc_A190 Monopolin complex subunit CSM1; RWD domain, kineto 82.02
4etp_A 403 Kinesin-like protein KAR3; kinesin motor protein, 81.58
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 81.43
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Back     alignment and structure
Probab=100.00  E-value=6.5e-46  Score=342.02  Aligned_cols=153  Identities=39%  Similarity=0.644  Sum_probs=143.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccchHhhh
Q 019043          159 KIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKIN  238 (347)
Q Consensus       159 ~~~L~~~l~~L~~el~elkdk~lRl~ADfEN~RKRtekE~e~~~~~A~e~ll~dLLpVlDnLErAl~~~~~e~e~~~~l~  238 (347)
                      +..|+.+|..|++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.++.. ......+.
T Consensus        61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~-~~~~~~l~  139 (213)
T 4ani_A           61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETD-NEQAKSIL  139 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSC-CSTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc-cccHHHHH
Confidence            34567788889999999999999999999999999999999999999999999999999999999987642 23456899


Q ss_pred             hHHHHHHHHHHHHHHhCCCeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeec
Q 019043          239 NSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSA  312 (347)
Q Consensus       239 eg~~~I~kqL~~iL~k~GVe~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk  312 (347)
                      +||.||+++|.++|.++||+.|+++|++|||++|+||+++++++.++|+|++|+|+||+|||||||||||+|++
T Consensus       140 eGvemi~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Va~  213 (213)
T 4ani_A          140 QGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRVLRPAMVKVSQ  213 (213)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSCSSSEEEEEECCCEETTSCCSCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCCCCcEEEEEeCCeEECCEEeeceEEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999985
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus} Back     alignment and structure
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1 Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens} Back     alignment and structure
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A Back     alignment and structure
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 347
d1dkga159 b.73.1.1 (A:139-197) Head domain of nucleotide exc 3e-21
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]} Length = 59 Back     information, alignment and structure

class: All beta proteins
fold: Head domain of nucleotide exchange factor GrpE
superfamily: Head domain of nucleotide exchange factor GrpE
family: Head domain of nucleotide exchange factor GrpE
domain: Head domain of nucleotide exchange factor GrpE
species: Escherichia coli [TaxId: 562]

 Score = 83.9 bits (208), Expect = 3e-21
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 259 PVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGP 314
            +     P DP +H+AI   +S +   G ++   +KG+ L  R +R +MV V+   
Sbjct: 3   VIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAK 58

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query347
d1dkga159 Head domain of nucleotide exchange factor GrpE {Es 99.87
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Head domain of nucleotide exchange factor GrpE
superfamily: Head domain of nucleotide exchange factor GrpE
family: Head domain of nucleotide exchange factor GrpE
domain: Head domain of nucleotide exchange factor GrpE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.9e-23  Score=152.72  Aligned_cols=58  Identities=29%  Similarity=0.528  Sum_probs=56.0

Q ss_pred             CeeecCCCCCCCccccceeeeecCCCCCCCceeEEeccccccCCeeeecceEEeecCC
Q 019043          257 VVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGP  314 (347)
Q Consensus       257 Ve~I~~vGe~FDP~lHEAV~~~es~e~e~gtVveV~qkGY~l~dRVLRPA~V~Vsk~P  314 (347)
                      |+.|+++|++|||++||||+++++++.++|+|++|+|+||+|+|||||||+|+|+++|
T Consensus         1 ve~i~~~g~~FDP~~HeAv~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V~k~~   58 (59)
T d1dkga1           1 VEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAK   58 (59)
T ss_dssp             EEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEEECEEEEEEECC
T ss_pred             CceeCCCCCCCCHHHceEeeEecCCCCCCCEEEEEEeCCcEECCEEeeccEEEEecCC
Confidence            5789999999999999999999999999999999999999999999999999999976